Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211910 | XP_013458197.1 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 1.76e-109 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211910 | sp|Q6L4D2|PM19L_ORYSJ | 40.816 | 147 | 67 | 3 | 13 | 155 | 12 | 142 | 1.78e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211910 | I3SV18 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 8.43e-110 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1211910 | 0.829004 | 6.559059e-55 | -8.615850e-47 |
| Msa0064120 | Msa1211910 | 0.809995 | 1.435973e-50 | -8.615850e-47 |
| Msa0740090 | Msa1211910 | 0.805691 | 1.181078e-49 | -8.615850e-47 |
| Msa0155180 | Msa1211910 | 0.852673 | 3.957200e-61 | -8.615850e-47 |
| Msa0382530 | Msa1211910 | 0.839410 | 1.611167e-57 | -8.615850e-47 |
| Msa0432320 | Msa1211910 | 0.825844 | 3.754844e-54 | -8.615850e-47 |
| Msa0474060 | Msa1211910 | 0.800489 | 1.407299e-48 | -8.615850e-47 |
| Msa1211910 | Msa1360930 | 0.806989 | 6.292294e-50 | -8.615850e-47 |
| Msa1211910 | Msa1429860 | 0.830821 | 2.366063e-55 | -8.615850e-47 |
| Msa1211910 | Msa1435630 | 0.839110 | 1.927021e-57 | -8.615850e-47 |
| Msa1211910 | Msa1462560 | 0.995332 | 3.154709e-215 | -8.615850e-47 |
| Msa0525210 | Msa1211910 | 0.836513 | 8.955070e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211910 | MtrunA17_Chr4g0065951 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 1.62e-113 | 318 |
| Msa1211910 | MtrunA17_Chr2g0303931 | 50.340 | 147 | 73 | 0 | 1 | 147 | 1 | 147 | 2.53e-40 | 133 |
| Msa1211910 | MtrunA17_Chr6g0478031 | 47.020 | 151 | 80 | 0 | 7 | 157 | 2 | 152 | 2.70e-40 | 133 |
| Msa1211910 | MtrunA17_Chr1g0199041 | 38.926 | 149 | 67 | 4 | 13 | 155 | 12 | 142 | 5.84e-24 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1211910 | AT5G18970.1 | 69.620 | 158 | 48 | 0 | 1 | 158 | 1 | 158 | 3.36e-79 | 233 |
| Msa1211910 | AT5G46530.1 | 46.939 | 147 | 78 | 0 | 7 | 153 | 7 | 153 | 3.32e-41 | 135 |
| Msa1211910 | AT1G29520.1 | 49.020 | 153 | 78 | 0 | 1 | 153 | 1 | 153 | 2.90e-39 | 131 |
| Msa1211910 | AT1G04560.1 | 39.490 | 157 | 81 | 2 | 1 | 156 | 1 | 144 | 5.86e-26 | 97.8 |
Find 54 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCCATTGGAAAGTATAT+TGG | 0.242510 | 8_1:-71692933 | None:intergenic |
| TTCTTCTGAGAATTCATATA+TGG | 0.274907 | 8_1:-71693672 | None:intergenic |
| CATTGGCTCCAACTGAAATT+TGG | 0.276417 | 8_1:-71693649 | None:intergenic |
| ACACTAGATTGAGGGTTAAA+AGG | 0.282593 | 8_1:-71692459 | None:intergenic |
| ATGGCTGCAGCATTTAAATT+AGG | 0.305394 | 8_1:-71693056 | None:intergenic |
| ATAATCTTCACTCTAATTGC+TGG | 0.330951 | 8_1:+71692975 | Msa1211910:CDS |
| ACTCTAATTGCTGGTGTTGT+GGG | 0.351945 | 8_1:+71692984 | Msa1211910:CDS |
| GGTTTCACTACATCAGTAAC+TGG | 0.354086 | 8_1:+71693005 | Msa1211910:CDS |
| TCCCCATTGGAAAGTATATT+GGG | 0.354392 | 8_1:-71692932 | None:intergenic |
| GTAAACAAATCAAAGGAATT+AGG | 0.381105 | 8_1:-71693724 | None:intergenic |
| CACTCTAATTGCTGGTGTTG+TGG | 0.382264 | 8_1:+71692983 | Msa1211910:CDS |
| GCACGACAGTTATCCATGTT+GGG | 0.393448 | 8_1:+71693588 | Msa1211910:CDS |
| TTGTGATTGTAATTGCTTCA+TGG | 0.397741 | 8_1:+71692491 | Msa1211910:CDS |
| CCAATGGGGAACATGACAAC+TGG | 0.405161 | 8_1:+71692945 | Msa1211910:CDS |
| TGTTGTTTGAGGATGGCTTC+CGG | 0.409237 | 8_1:+71692412 | Msa1211910:exon |
| TTCCCAATATACTTTCCAAT+GGG | 0.420160 | 8_1:+71692930 | Msa1211910:CDS |
| CAATTATTGTGATTGTTTCA+AGG | 0.431523 | 8_1:-71693544 | None:intergenic |
| AATTATTGTGATTGTTTCAA+GGG | 0.436827 | 8_1:-71693543 | None:intergenic |
| AACTTGATCATTGTTGTTTG+AGG | 0.443724 | 8_1:+71692401 | Msa1211910:five_prime_UTR |
| TTAAATTAGGAGCATTCCAT+TGG | 0.456921 | 8_1:-71693043 | None:intergenic |
| GGCACTCACTCTGTTAGCCA+TGG | 0.473924 | 8_1:+71693097 | Msa1211910:CDS |
| TGAGAATTCATATATGGCAT+TGG | 0.484778 | 8_1:-71693666 | None:intergenic |
| TGCACGACAGTTATCCATGT+TGG | 0.489286 | 8_1:+71693587 | Msa1211910:CDS |
| CCATGTCTTCACTGACAACA+TGG | 0.491482 | 8_1:+71693075 | Msa1211910:CDS |
| TGTGATTGTAATTGCTTCAT+GGG | 0.493799 | 8_1:+71692492 | Msa1211910:CDS |
| GCACTCACTCTGTTAGCCAT+GGG | 0.500737 | 8_1:+71693098 | Msa1211910:CDS |
| ATCATGGCATTCAAAGGTCT+AGG | 0.516571 | 8_1:+71692521 | Msa1211910:CDS |
| GCTTCATGGGCAATGAATCA+TGG | 0.517487 | 8_1:+71692505 | Msa1211910:CDS |
| TGAAATACAACACTAGATTG+AGG | 0.520580 | 8_1:-71692468 | None:intergenic |
| GGATCAAAATCAGTAGCCTT+AGG | 0.522274 | 8_1:+71692436 | Msa1211910:CDS |
| GCAAAGAGATTGAACGTGGT+TGG | 0.522540 | 8_1:+71693252 | Msa1211910:CDS |
| ATTCCCAATATACTTTCCAA+TGG | 0.522562 | 8_1:+71692929 | Msa1211910:CDS |
| CCAGTTGTCATGTTCCCCAT+TGG | 0.525769 | 8_1:-71692945 | None:intergenic |
| GAAATACAACACTAGATTGA+GGG | 0.526099 | 8_1:-71692467 | None:intergenic |
| ATTCAAAGGTCTAGGGAAGC+AGG | 0.526713 | 8_1:+71692529 | Msa1211910:CDS |
| TAGTTTCACCAAATTTCAGT+TGG | 0.544486 | 8_1:+71693641 | Msa1211910:exon |
| TATATTGGGAATATGTGAGC+TGG | 0.546271 | 8_1:-71692918 | None:intergenic |
| TGATCATTGTTGTTTGAGGA+TGG | 0.551046 | 8_1:+71692405 | Msa1211910:exon |
| CAATGAATCATGGCATTCAA+AGG | 0.553913 | 8_1:+71692515 | Msa1211910:CDS |
| ATTGAGGGTTAAAAGGCCTA+AGG | 0.558428 | 8_1:-71692452 | None:intergenic |
| CACGACAGTTATCCATGTTG+GGG | 0.573087 | 8_1:+71693589 | Msa1211910:CDS |
| CCATGTTGTCAGTGAAGACA+TGG | 0.585540 | 8_1:-71693075 | None:intergenic |
| TCATGGCATTCAAAGGTCTA+GGG | 0.602141 | 8_1:+71692522 | Msa1211910:CDS |
| CACTCACTCTGTTAGCCATG+GGG | 0.605084 | 8_1:+71693099 | Msa1211910:CDS |
| AACTATCTTGTAATTCTCTG+TGG | 0.607338 | 8_1:-71693623 | None:intergenic |
| TGGTTGGACTGATTCAAACC+TGG | 0.614574 | 8_1:+71693268 | Msa1211910:CDS |
| GAACTTCTGAAGCCCCAACA+TGG | 0.616123 | 8_1:-71693601 | None:intergenic |
| TGGGAATATGTGAGCTGGAG+TGG | 0.616192 | 8_1:-71692913 | None:intergenic |
| GATTGAATAACATATTCCAA+TGG | 0.624471 | 8_1:+71693027 | Msa1211910:CDS |
| CGTGCATAACAGTTGTGTTG+CGG | 0.634337 | 8_1:-71693570 | None:intergenic |
| TGTTTGAGGATGGCTTCCGG+AGG | 0.647389 | 8_1:+71692415 | Msa1211910:exon |
| CATGTCTTCACTGACAACAT+GGG | 0.663676 | 8_1:+71693076 | Msa1211910:CDS |
| TCCCAATATACTTTCCAATG+GGG | 0.680310 | 8_1:+71692931 | Msa1211910:CDS |
| GCATGCAAAGAGATTGAACG+TGG | 0.746939 | 8_1:+71693248 | Msa1211910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATCAATATTTTGTTT+TGG | - | chr8_1:71692831-71692850 | None:intergenic | 10.0% |
| !!! | AAATTATCAATATTTTGTTT+TGG | - | chr8_1:71692831-71692850 | None:intergenic | 10.0% |
| !!! | TTTAAAGCTAAAAAAAAACT+TGG | - | chr8_1:71692382-71692401 | None:intergenic | 15.0% |
| !!! | TAATTCAAATTGATTTATCA+TGG | + | chr8_1:71692552-71692571 | Msa1211910:intron | 15.0% |
| !! | AACTATATGTAATCAAAATA+GGG | - | chr8_1:71693143-71693162 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTTTTTATTTTAC+TGG | + | chr8_1:71693439-71693458 | Msa1211910:intron | 15.0% |
| !!! | AACATCATATTCATTATTTT+TGG | + | chr8_1:71693498-71693517 | Msa1211910:intron | 15.0% |
| !!! | TTTAAAGCTAAAAAAAAACT+TGG | - | chr8_1:71692382-71692401 | None:intergenic | 15.0% |
| !!! | TAATTCAAATTGATTTATCA+TGG | + | chr8_1:71692552-71692571 | Msa1211910:intron | 15.0% |
| !! | AACTATATGTAATCAAAATA+GGG | - | chr8_1:71693143-71693162 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTTTTTATTTTAC+TGG | + | chr8_1:71693439-71693458 | Msa1211910:intron | 15.0% |
| !!! | AACATCATATTCATTATTTT+TGG | + | chr8_1:71693498-71693517 | Msa1211910:intron | 15.0% |
| !!! | TCCAAACAAATTTTTTTACA+AGG | + | chr8_1:71692753-71692772 | Msa1211910:intron | 20.0% |
| !!! | TCCTTGTAAAAAAATTTGTT+TGG | - | chr8_1:71692757-71692776 | None:intergenic | 20.0% |
| !! | ACTATATGTAATCAAAATAG+GGG | - | chr8_1:71693142-71693161 | None:intergenic | 20.0% |
| !! | GAACTATATGTAATCAAAAT+AGG | - | chr8_1:71693144-71693163 | None:intergenic | 20.0% |
| !! | TATTACAATGTATTTGGATT+GGG | - | chr8_1:71693201-71693220 | None:intergenic | 20.0% |
| !! | ATATTACAATGTATTTGGAT+TGG | - | chr8_1:71693202-71693221 | None:intergenic | 20.0% |
| !! | AATCCAAATACATTGTAATA+TGG | + | chr8_1:71693201-71693220 | Msa1211910:intron | 20.0% |
| !! | ATCCAAATACATTGTAATAT+GGG | + | chr8_1:71693202-71693221 | Msa1211910:intron | 20.0% |
| !! | AATTATTGTGATTGTTTCAA+GGG | - | chr8_1:71693546-71693565 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTAAACAAATCAA+AGG | - | chr8_1:71693734-71693753 | None:intergenic | 20.0% |
| !! | CATAAAAAAACAATATGATG+TGG | - | chr8_1:71693857-71693876 | None:intergenic | 20.0% |
| !!! | TCCAAACAAATTTTTTTACA+AGG | + | chr8_1:71692753-71692772 | Msa1211910:intron | 20.0% |
| !!! | TCCTTGTAAAAAAATTTGTT+TGG | - | chr8_1:71692757-71692776 | None:intergenic | 20.0% |
| !! | ACTATATGTAATCAAAATAG+GGG | - | chr8_1:71693142-71693161 | None:intergenic | 20.0% |
| !! | GAACTATATGTAATCAAAAT+AGG | - | chr8_1:71693144-71693163 | None:intergenic | 20.0% |
| !! | TATTACAATGTATTTGGATT+GGG | - | chr8_1:71693201-71693220 | None:intergenic | 20.0% |
| !! | ATATTACAATGTATTTGGAT+TGG | - | chr8_1:71693202-71693221 | None:intergenic | 20.0% |
| !! | AATCCAAATACATTGTAATA+TGG | + | chr8_1:71693201-71693220 | Msa1211910:intron | 20.0% |
| !! | ATCCAAATACATTGTAATAT+GGG | + | chr8_1:71693202-71693221 | Msa1211910:intron | 20.0% |
| !! | AATTATTGTGATTGTTTCAA+GGG | - | chr8_1:71693546-71693565 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTAAACAAATCAA+AGG | - | chr8_1:71693734-71693753 | None:intergenic | 20.0% |
| !! | CATAAAAAAACAATATGATG+TGG | - | chr8_1:71693857-71693876 | None:intergenic | 20.0% |
| ! | CTAAAAAAAAACTTGGATTG+TGG | - | chr8_1:71692375-71692394 | None:intergenic | 25.0% |
| !!! | ACGTCAATTTTTTATTTGCA+TGG | - | chr8_1:71692622-71692641 | None:intergenic | 25.0% |
| ! | GATTGAATAACATATTCCAA+TGG | + | chr8_1:71693027-71693046 | Msa1211910:CDS | 25.0% |
| ! | CTATATGTAATCAAAATAGG+GGG | - | chr8_1:71693141-71693160 | None:intergenic | 25.0% |
| !!! | ACTCTATTTCTAGTGTAATT+TGG | + | chr8_1:71693364-71693383 | Msa1211910:intron | 25.0% |
| !! | TAATTTGGTAGCTAAGAAAA+TGG | + | chr8_1:71693379-71693398 | Msa1211910:intron | 25.0% |
| ! | CAATTATTGTGATTGTTTCA+AGG | - | chr8_1:71693547-71693566 | None:intergenic | 25.0% |
| !! | TTCTTCTGAGAATTCATATA+TGG | - | chr8_1:71693675-71693694 | None:intergenic | 25.0% |
| ! | GTAAACAAATCAAAGGAATT+AGG | - | chr8_1:71693727-71693746 | None:intergenic | 25.0% |
| ! | CTAAAAAAAAACTTGGATTG+TGG | - | chr8_1:71692375-71692394 | None:intergenic | 25.0% |
| !!! | ACGTCAATTTTTTATTTGCA+TGG | - | chr8_1:71692622-71692641 | None:intergenic | 25.0% |
| ! | GATTGAATAACATATTCCAA+TGG | + | chr8_1:71693027-71693046 | Msa1211910:CDS | 25.0% |
| ! | CTATATGTAATCAAAATAGG+GGG | - | chr8_1:71693141-71693160 | None:intergenic | 25.0% |
| !!! | ACTCTATTTCTAGTGTAATT+TGG | + | chr8_1:71693364-71693383 | Msa1211910:intron | 25.0% |
| !! | TAATTTGGTAGCTAAGAAAA+TGG | + | chr8_1:71693379-71693398 | Msa1211910:intron | 25.0% |
| ! | CAATTATTGTGATTGTTTCA+AGG | - | chr8_1:71693547-71693566 | None:intergenic | 25.0% |
| !! | TTCTTCTGAGAATTCATATA+TGG | - | chr8_1:71693675-71693694 | None:intergenic | 25.0% |
| ! | GTAAACAAATCAAAGGAATT+AGG | - | chr8_1:71693727-71693746 | None:intergenic | 25.0% |
| !! | AACTTGATCATTGTTGTTTG+AGG | + | chr8_1:71692401-71692420 | Msa1211910:five_prime_UTR | 30.0% |
| GAAATACAACACTAGATTGA+GGG | - | chr8_1:71692470-71692489 | None:intergenic | 30.0% | |
| TGAAATACAACACTAGATTG+AGG | - | chr8_1:71692471-71692490 | None:intergenic | 30.0% | |
| TTGTGATTGTAATTGCTTCA+TGG | + | chr8_1:71692491-71692510 | Msa1211910:CDS | 30.0% | |
| TGTGATTGTAATTGCTTCAT+GGG | + | chr8_1:71692492-71692511 | Msa1211910:CDS | 30.0% | |
| GTCATATGTCGTGATTATAA+TGG | + | chr8_1:71692674-71692693 | Msa1211910:intron | 30.0% | |
| ATTCCCAATATACTTTCCAA+TGG | + | chr8_1:71692929-71692948 | Msa1211910:CDS | 30.0% | |
| TTCCCAATATACTTTCCAAT+GGG | + | chr8_1:71692930-71692949 | Msa1211910:CDS | 30.0% | |
| ATAATCTTCACTCTAATTGC+TGG | + | chr8_1:71692975-71692994 | Msa1211910:CDS | 30.0% | |
| !! | TTAAATTAGGAGCATTCCAT+TGG | - | chr8_1:71693046-71693065 | None:intergenic | 30.0% |
| AAAATAGGGGGATTAGAATA+AGG | - | chr8_1:71693129-71693148 | None:intergenic | 30.0% | |
| CACCCATATTACAATGTATT+TGG | - | chr8_1:71693207-71693226 | None:intergenic | 30.0% | |
| ATGCAAATCTGCAAGAAAAT+TGG | - | chr8_1:71693232-71693251 | None:intergenic | 30.0% | |
| GATATATAAAGAAGCTTACC+AGG | - | chr8_1:71693289-71693308 | None:intergenic | 30.0% | |
| AACTATCTTGTAATTCTCTG+TGG | - | chr8_1:71693626-71693645 | None:intergenic | 30.0% | |
| TAGTTTCACCAAATTTCAGT+TGG | + | chr8_1:71693641-71693660 | Msa1211910:exon | 30.0% | |
| TGAGAATTCATATATGGCAT+TGG | - | chr8_1:71693669-71693688 | None:intergenic | 30.0% | |
| !! | AACTTGATCATTGTTGTTTG+AGG | + | chr8_1:71692401-71692420 | Msa1211910:five_prime_UTR | 30.0% |
| GAAATACAACACTAGATTGA+GGG | - | chr8_1:71692470-71692489 | None:intergenic | 30.0% | |
| TGAAATACAACACTAGATTG+AGG | - | chr8_1:71692471-71692490 | None:intergenic | 30.0% | |
| TTGTGATTGTAATTGCTTCA+TGG | + | chr8_1:71692491-71692510 | Msa1211910:CDS | 30.0% | |
| TGTGATTGTAATTGCTTCAT+GGG | + | chr8_1:71692492-71692511 | Msa1211910:CDS | 30.0% | |
| GTCATATGTCGTGATTATAA+TGG | + | chr8_1:71692674-71692693 | Msa1211910:intron | 30.0% | |
| ATTCCCAATATACTTTCCAA+TGG | + | chr8_1:71692929-71692948 | Msa1211910:CDS | 30.0% | |
| TTCCCAATATACTTTCCAAT+GGG | + | chr8_1:71692930-71692949 | Msa1211910:CDS | 30.0% | |
| ATAATCTTCACTCTAATTGC+TGG | + | chr8_1:71692975-71692994 | Msa1211910:CDS | 30.0% | |
| !! | TTAAATTAGGAGCATTCCAT+TGG | - | chr8_1:71693046-71693065 | None:intergenic | 30.0% |
| AAAATAGGGGGATTAGAATA+AGG | - | chr8_1:71693129-71693148 | None:intergenic | 30.0% | |
| CACCCATATTACAATGTATT+TGG | - | chr8_1:71693207-71693226 | None:intergenic | 30.0% | |
| ATGCAAATCTGCAAGAAAAT+TGG | - | chr8_1:71693232-71693251 | None:intergenic | 30.0% | |
| GATATATAAAGAAGCTTACC+AGG | - | chr8_1:71693289-71693308 | None:intergenic | 30.0% | |
| AACTATCTTGTAATTCTCTG+TGG | - | chr8_1:71693626-71693645 | None:intergenic | 30.0% | |
| TAGTTTCACCAAATTTCAGT+TGG | + | chr8_1:71693641-71693660 | Msa1211910:exon | 30.0% | |
| TGAGAATTCATATATGGCAT+TGG | - | chr8_1:71693669-71693688 | None:intergenic | 30.0% | |
| !! | TGATCATTGTTGTTTGAGGA+TGG | + | chr8_1:71692405-71692424 | Msa1211910:exon | 35.0% |
| ACACTAGATTGAGGGTTAAA+AGG | - | chr8_1:71692462-71692481 | None:intergenic | 35.0% | |
| CAATGAATCATGGCATTCAA+AGG | + | chr8_1:71692515-71692534 | Msa1211910:CDS | 35.0% | |
| CATCAATTTATTGAGCCACT+TGG | + | chr8_1:71692650-71692669 | Msa1211910:intron | 35.0% | |
| TATATTGGGAATATGTGAGC+TGG | - | chr8_1:71692921-71692940 | None:intergenic | 35.0% | |
| TCCCAATATACTTTCCAATG+GGG | + | chr8_1:71692931-71692950 | Msa1211910:CDS | 35.0% | |
| ! | TCCCCATTGGAAAGTATATT+GGG | - | chr8_1:71692935-71692954 | None:intergenic | 35.0% |
| ! | TTCCCCATTGGAAAGTATAT+TGG | - | chr8_1:71692936-71692955 | None:intergenic | 35.0% |
| ATGGCTGCAGCATTTAAATT+AGG | - | chr8_1:71693059-71693078 | None:intergenic | 35.0% | |
| !! | TGATCATTGTTGTTTGAGGA+TGG | + | chr8_1:71692405-71692424 | Msa1211910:exon | 35.0% |
| ACACTAGATTGAGGGTTAAA+AGG | - | chr8_1:71692462-71692481 | None:intergenic | 35.0% | |
| CAATGAATCATGGCATTCAA+AGG | + | chr8_1:71692515-71692534 | Msa1211910:CDS | 35.0% | |
| CATCAATTTATTGAGCCACT+TGG | + | chr8_1:71692650-71692669 | Msa1211910:intron | 35.0% | |
| TATATTGGGAATATGTGAGC+TGG | - | chr8_1:71692921-71692940 | None:intergenic | 35.0% | |
| TCCCAATATACTTTCCAATG+GGG | + | chr8_1:71692931-71692950 | Msa1211910:CDS | 35.0% | |
| ! | TCCCCATTGGAAAGTATATT+GGG | - | chr8_1:71692935-71692954 | None:intergenic | 35.0% |
| ! | TTCCCCATTGGAAAGTATAT+TGG | - | chr8_1:71692936-71692955 | None:intergenic | 35.0% |
| ATGGCTGCAGCATTTAAATT+AGG | - | chr8_1:71693059-71693078 | None:intergenic | 35.0% | |
| GGATCAAAATCAGTAGCCTT+AGG | + | chr8_1:71692436-71692455 | Msa1211910:CDS | 40.0% | |
| ATTGAGGGTTAAAAGGCCTA+AGG | - | chr8_1:71692455-71692474 | None:intergenic | 40.0% | |
| ATCATGGCATTCAAAGGTCT+AGG | + | chr8_1:71692521-71692540 | Msa1211910:CDS | 40.0% | |
| TCATGGCATTCAAAGGTCTA+GGG | + | chr8_1:71692522-71692541 | Msa1211910:CDS | 40.0% | |
| !! | GTGATTATAATGGACCACGT+AGG | + | chr8_1:71692684-71692703 | Msa1211910:intron | 40.0% |
| !! | ACTCTAATTGCTGGTGTTGT+GGG | + | chr8_1:71692984-71693003 | Msa1211910:CDS | 40.0% |
| GGTTTCACTACATCAGTAAC+TGG | + | chr8_1:71693005-71693024 | Msa1211910:CDS | 40.0% | |
| CATGTCTTCACTGACAACAT+GGG | + | chr8_1:71693076-71693095 | Msa1211910:CDS | 40.0% | |
| !! | CATTGGCTCCAACTGAAATT+TGG | - | chr8_1:71693652-71693671 | None:intergenic | 40.0% |
| GGATCAAAATCAGTAGCCTT+AGG | + | chr8_1:71692436-71692455 | Msa1211910:CDS | 40.0% | |
| ATTGAGGGTTAAAAGGCCTA+AGG | - | chr8_1:71692455-71692474 | None:intergenic | 40.0% | |
| ATCATGGCATTCAAAGGTCT+AGG | + | chr8_1:71692521-71692540 | Msa1211910:CDS | 40.0% | |
| TCATGGCATTCAAAGGTCTA+GGG | + | chr8_1:71692522-71692541 | Msa1211910:CDS | 40.0% | |
| !! | GTGATTATAATGGACCACGT+AGG | + | chr8_1:71692684-71692703 | Msa1211910:intron | 40.0% |
| !! | ACTCTAATTGCTGGTGTTGT+GGG | + | chr8_1:71692984-71693003 | Msa1211910:CDS | 40.0% |
| GGTTTCACTACATCAGTAAC+TGG | + | chr8_1:71693005-71693024 | Msa1211910:CDS | 40.0% | |
| CATGTCTTCACTGACAACAT+GGG | + | chr8_1:71693076-71693095 | Msa1211910:CDS | 40.0% | |
| !! | CATTGGCTCCAACTGAAATT+TGG | - | chr8_1:71693652-71693671 | None:intergenic | 40.0% |
| ! | TGTTGTTTGAGGATGGCTTC+CGG | + | chr8_1:71692412-71692431 | Msa1211910:exon | 45.0% |
| !!! | GGCTACTGATTTTGATCCTC+CGG | - | chr8_1:71692434-71692453 | None:intergenic | 45.0% |
| GCTTCATGGGCAATGAATCA+TGG | + | chr8_1:71692505-71692524 | Msa1211910:CDS | 45.0% | |
| ATTCAAAGGTCTAGGGAAGC+AGG | + | chr8_1:71692529-71692548 | Msa1211910:CDS | 45.0% | |
| TCACGACATATGACACCAAG+TGG | - | chr8_1:71692668-71692687 | None:intergenic | 45.0% | |
| TTAGTCACTAACGTCCTACG+TGG | - | chr8_1:71692701-71692720 | None:intergenic | 45.0% | |
| ! | CACTCTAATTGCTGGTGTTG+TGG | + | chr8_1:71692983-71693002 | Msa1211910:CDS | 45.0% |
| CCATGTTGTCAGTGAAGACA+TGG | - | chr8_1:71693078-71693097 | None:intergenic | 45.0% | |
| CCATGTCTTCACTGACAACA+TGG | + | chr8_1:71693075-71693094 | Msa1211910:CDS | 45.0% | |
| TTAGAATAAGGCTGACCCCA+TGG | - | chr8_1:71693117-71693136 | None:intergenic | 45.0% | |
| GCATGCAAAGAGATTGAACG+TGG | + | chr8_1:71693248-71693267 | Msa1211910:CDS | 45.0% | |
| GCAAAGAGATTGAACGTGGT+TGG | + | chr8_1:71693252-71693271 | Msa1211910:CDS | 45.0% | |
| ! | TGGTTGGACTGATTCAAACC+TGG | + | chr8_1:71693268-71693287 | Msa1211910:CDS | 45.0% |
| CGTGCATAACAGTTGTGTTG+CGG | - | chr8_1:71693573-71693592 | None:intergenic | 45.0% | |
| TGCACGACAGTTATCCATGT+TGG | + | chr8_1:71693587-71693606 | Msa1211910:CDS | 45.0% | |
| GCACGACAGTTATCCATGTT+GGG | + | chr8_1:71693588-71693607 | Msa1211910:CDS | 45.0% | |
| CACGACAGTTATCCATGTTG+GGG | + | chr8_1:71693589-71693608 | Msa1211910:CDS | 45.0% | |
| ! | TGTTGTTTGAGGATGGCTTC+CGG | + | chr8_1:71692412-71692431 | Msa1211910:exon | 45.0% |
| !!! | GGCTACTGATTTTGATCCTC+CGG | - | chr8_1:71692434-71692453 | None:intergenic | 45.0% |
| GCTTCATGGGCAATGAATCA+TGG | + | chr8_1:71692505-71692524 | Msa1211910:CDS | 45.0% | |
| ATTCAAAGGTCTAGGGAAGC+AGG | + | chr8_1:71692529-71692548 | Msa1211910:CDS | 45.0% | |
| TCACGACATATGACACCAAG+TGG | - | chr8_1:71692668-71692687 | None:intergenic | 45.0% | |
| TTAGTCACTAACGTCCTACG+TGG | - | chr8_1:71692701-71692720 | None:intergenic | 45.0% | |
| ! | CACTCTAATTGCTGGTGTTG+TGG | + | chr8_1:71692983-71693002 | Msa1211910:CDS | 45.0% |
| CCATGTTGTCAGTGAAGACA+TGG | - | chr8_1:71693078-71693097 | None:intergenic | 45.0% | |
| CCATGTCTTCACTGACAACA+TGG | + | chr8_1:71693075-71693094 | Msa1211910:CDS | 45.0% | |
| TTAGAATAAGGCTGACCCCA+TGG | - | chr8_1:71693117-71693136 | None:intergenic | 45.0% | |
| GCATGCAAAGAGATTGAACG+TGG | + | chr8_1:71693248-71693267 | Msa1211910:CDS | 45.0% | |
| GCAAAGAGATTGAACGTGGT+TGG | + | chr8_1:71693252-71693271 | Msa1211910:CDS | 45.0% | |
| ! | TGGTTGGACTGATTCAAACC+TGG | + | chr8_1:71693268-71693287 | Msa1211910:CDS | 45.0% |
| CGTGCATAACAGTTGTGTTG+CGG | - | chr8_1:71693573-71693592 | None:intergenic | 45.0% | |
| TGCACGACAGTTATCCATGT+TGG | + | chr8_1:71693587-71693606 | Msa1211910:CDS | 45.0% | |
| GCACGACAGTTATCCATGTT+GGG | + | chr8_1:71693588-71693607 | Msa1211910:CDS | 45.0% | |
| CACGACAGTTATCCATGTTG+GGG | + | chr8_1:71693589-71693608 | Msa1211910:CDS | 45.0% | |
| TGGGAATATGTGAGCTGGAG+TGG | - | chr8_1:71692916-71692935 | None:intergenic | 50.0% | |
| CCAGTTGTCATGTTCCCCAT+TGG | - | chr8_1:71692948-71692967 | None:intergenic | 50.0% | |
| CCAATGGGGAACATGACAAC+TGG | + | chr8_1:71692945-71692964 | Msa1211910:CDS | 50.0% | |
| GCACTCACTCTGTTAGCCAT+GGG | + | chr8_1:71693098-71693117 | Msa1211910:CDS | 50.0% | |
| CACTCACTCTGTTAGCCATG+GGG | + | chr8_1:71693099-71693118 | Msa1211910:CDS | 50.0% | |
| ! | TGATTGTTTCAAGGGTGCGC+TGG | - | chr8_1:71693538-71693557 | None:intergenic | 50.0% |
| !! | GAACTTCTGAAGCCCCAACA+TGG | - | chr8_1:71693604-71693623 | None:intergenic | 50.0% |
| TGGGAATATGTGAGCTGGAG+TGG | - | chr8_1:71692916-71692935 | None:intergenic | 50.0% | |
| CCAGTTGTCATGTTCCCCAT+TGG | - | chr8_1:71692948-71692967 | None:intergenic | 50.0% | |
| CCAATGGGGAACATGACAAC+TGG | + | chr8_1:71692945-71692964 | Msa1211910:CDS | 50.0% | |
| GCACTCACTCTGTTAGCCAT+GGG | + | chr8_1:71693098-71693117 | Msa1211910:CDS | 50.0% | |
| CACTCACTCTGTTAGCCATG+GGG | + | chr8_1:71693099-71693118 | Msa1211910:CDS | 50.0% | |
| ! | TGATTGTTTCAAGGGTGCGC+TGG | - | chr8_1:71693538-71693557 | None:intergenic | 50.0% |
| !! | GAACTTCTGAAGCCCCAACA+TGG | - | chr8_1:71693604-71693623 | None:intergenic | 50.0% |
| TGTTTGAGGATGGCTTCCGG+AGG | + | chr8_1:71692415-71692434 | Msa1211910:exon | 55.0% | |
| GGCACTCACTCTGTTAGCCA+TGG | + | chr8_1:71693097-71693116 | Msa1211910:CDS | 55.0% | |
| TGTTTGAGGATGGCTTCCGG+AGG | + | chr8_1:71692415-71692434 | Msa1211910:exon | 55.0% | |
| GGCACTCACTCTGTTAGCCA+TGG | + | chr8_1:71693097-71693116 | Msa1211910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 71692369 | 71693902 | 71692369 | ID=Msa1211910;Name=Msa1211910 |
| chr8_1 | mRNA | 71692369 | 71693902 | 71692369 | ID=Msa1211910-mRNA-1;Parent=Msa1211910;Name=Msa1211910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=55|1|1|1|1|1|4|259|165 |
| chr8_1 | exon | 71692369 | 71692550 | 71692369 | ID=Msa1211910-mRNA-1:exon:24138;Parent=Msa1211910-mRNA-1 |
| chr8_1 | exon | 71692901 | 71693120 | 71692901 | ID=Msa1211910-mRNA-1:exon:24139;Parent=Msa1211910-mRNA-1 |
| chr8_1 | exon | 71693244 | 71693289 | 71693244 | ID=Msa1211910-mRNA-1:exon:24140;Parent=Msa1211910-mRNA-1 |
| chr8_1 | exon | 71693539 | 71693902 | 71693539 | ID=Msa1211910-mRNA-1:exon:24141;Parent=Msa1211910-mRNA-1 |
| chr8_1 | five_prime_UTR | 71692369 | 71692423 | 71692369 | ID=Msa1211910-mRNA-1:five_prime_utr;Parent=Msa1211910-mRNA-1 |
| chr8_1 | CDS | 71692424 | 71692550 | 71692424 | ID=Msa1211910-mRNA-1:cds;Parent=Msa1211910-mRNA-1 |
| chr8_1 | CDS | 71692901 | 71693120 | 71692901 | ID=Msa1211910-mRNA-1:cds;Parent=Msa1211910-mRNA-1 |
| chr8_1 | CDS | 71693244 | 71693289 | 71693244 | ID=Msa1211910-mRNA-1:cds;Parent=Msa1211910-mRNA-1 |
| chr8_1 | CDS | 71693539 | 71693643 | 71693539 | ID=Msa1211910-mRNA-1:cds;Parent=Msa1211910-mRNA-1 |
| chr8_1 | three_prime_UTR | 71693644 | 71693902 | 71693644 | ID=Msa1211910-mRNA-1:three_prime_utr;Parent=Msa1211910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
