Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432320 | XP_024633544.2 | 91.754 | 764 | 44 | 1 | 1 | 745 | 63 | 826 | 0.0 | 1449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432320 | sp|P86387|PLDA1_CARPA | 64.193 | 768 | 242 | 10 | 3 | 745 | 49 | 808 | 0.0 | 986 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432320 | A0A396J1N9 | 91.754 | 764 | 44 | 1 | 1 | 745 | 63 | 826 | 0.0 | 1449 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0432320 | 0.893531 | 5.765993e-75 | -8.615850e-47 |
| Msa0029960 | Msa0432320 | 0.849846 | 2.488482e-60 | -8.615850e-47 |
| Msa0029990 | Msa0432320 | 0.834388 | 3.084767e-56 | -8.615850e-47 |
| Msa0043290 | Msa0432320 | 0.814843 | 1.252906e-51 | -8.615850e-47 |
| Msa0064120 | Msa0432320 | 0.881197 | 2.931250e-70 | -8.615850e-47 |
| Msa0071840 | Msa0432320 | 0.836282 | 1.025295e-56 | -8.615850e-47 |
| Msa0071850 | Msa0432320 | 0.802553 | 5.311924e-49 | -8.615850e-47 |
| Msa0108880 | Msa0432320 | 0.868113 | 8.310222e-66 | -8.615850e-47 |
| Msa0125200 | Msa0432320 | 0.837549 | 4.867304e-57 | -8.615850e-47 |
| Msa0155180 | Msa0432320 | 0.896129 | 4.959056e-76 | -8.615850e-47 |
| Msa0182400 | Msa0432320 | 0.803549 | 3.305754e-49 | -8.615850e-47 |
| Msa0382530 | Msa0432320 | 0.971624 | 1.859780e-133 | -8.615850e-47 |
| Msa0418970 | Msa0432320 | 0.802434 | 5.622031e-49 | -8.615850e-47 |
| Msa0420680 | Msa0432320 | 0.801044 | 1.084072e-48 | -8.615850e-47 |
| Msa0432320 | Msa0451170 | 0.855231 | 7.249366e-62 | -8.615850e-47 |
| Msa0432320 | Msa0460550 | 0.823472 | 1.360016e-53 | -8.615850e-47 |
| Msa0432320 | Msa0460630 | 0.806332 | 8.658338e-50 | -8.615850e-47 |
| Msa0432320 | Msa0498610 | 0.846815 | 1.713914e-59 | -8.615850e-47 |
| Msa0432320 | Msa0525210 | 0.971780 | 1.048867e-133 | -8.615850e-47 |
| Msa0432320 | Msa0562560 | 0.816032 | 6.814864e-52 | -8.615850e-47 |
| Msa0432320 | Msa0562620 | 0.805484 | 1.305523e-49 | -8.615850e-47 |
| Msa0432320 | Msa0579780 | 0.809523 | 1.814312e-50 | -8.615850e-47 |
| Msa0432320 | Msa0609300 | 0.843367 | 1.463588e-58 | -8.615850e-47 |
| Msa0432320 | Msa0649840 | 0.814798 | 1.282136e-51 | -8.615850e-47 |
| Msa0432320 | Msa0655910 | 0.819159 | 1.344415e-52 | -8.615850e-47 |
| Msa0432320 | Msa0691910 | 0.840253 | 9.721196e-58 | -8.615850e-47 |
| Msa0432320 | Msa0740090 | 0.852289 | 5.089142e-61 | -8.615850e-47 |
| Msa0432320 | Msa0782750 | 0.825051 | 5.786995e-54 | -8.615850e-47 |
| Msa0432320 | Msa0800200 | 0.809180 | 2.148844e-50 | -8.615850e-47 |
| Msa0432320 | Msa0820380 | 0.834713 | 2.555699e-56 | -8.615850e-47 |
| Msa0432320 | Msa0849650 | 0.825848 | 3.747494e-54 | -8.615850e-47 |
| Msa0432320 | Msa1014320 | 0.863325 | 2.698260e-64 | -8.615850e-47 |
| Msa0432320 | Msa1021780 | 0.827095 | 1.890206e-54 | -8.615850e-47 |
| Msa0432320 | Msa1055310 | 0.882966 | 6.683002e-71 | -8.615850e-47 |
| Msa0432320 | Msa1145910 | 0.800540 | 1.373595e-48 | -8.615850e-47 |
| Msa0432320 | Msa1187760 | 0.801468 | 8.877829e-49 | -8.615850e-47 |
| Msa0432320 | Msa1188170 | 0.826047 | 3.361192e-54 | -8.615850e-47 |
| Msa0432320 | Msa1211910 | 0.825844 | 3.754844e-54 | -8.615850e-47 |
| Msa0432320 | Msa1262860 | 0.827269 | 1.717189e-54 | -8.615850e-47 |
| Msa0432320 | Msa1268380 | 0.805306 | 1.422855e-49 | -8.615850e-47 |
| Msa0432320 | Msa1268440 | 0.800520 | 1.386964e-48 | -8.615850e-47 |
| Msa0432320 | Msa1356220 | 0.810638 | 1.043637e-50 | -8.615850e-47 |
| Msa0432320 | Msa1356350 | 0.821771 | 3.381167e-53 | -8.615850e-47 |
| Msa0432320 | Msa1360930 | 0.814106 | 1.824310e-51 | -8.615850e-47 |
| Msa0432320 | Msa1429860 | 0.958552 | 1.775866e-116 | -8.615850e-47 |
| Msa0432320 | Msa1435630 | 0.971775 | 1.068480e-133 | -8.615850e-47 |
| Msa0432320 | Msa1462560 | 0.824544 | 7.622614e-54 | -8.615850e-47 |
| Msa0359010 | Msa0432320 | 0.850618 | 1.511769e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432320 | MtrunA17_Chr3g0137791 | 91.754 | 764 | 44 | 1 | 1 | 745 | 63 | 826 | 0.0 | 1449 |
| Msa0432320 | MtrunA17_Chr3g0137821 | 68.052 | 770 | 214 | 10 | 3 | 745 | 58 | 822 | 0.0 | 1052 |
| Msa0432320 | MtrunA17_Chr4g0003411 | 62.842 | 767 | 254 | 8 | 3 | 745 | 49 | 808 | 0.0 | 977 |
| Msa0432320 | MtrunA17_Chr2g0333021 | 63.377 | 770 | 246 | 9 | 3 | 745 | 49 | 809 | 0.0 | 969 |
| Msa0432320 | MtrunA17_Chr7g0246481 | 44.661 | 768 | 374 | 16 | 4 | 734 | 351 | 1104 | 0.0 | 632 |
| Msa0432320 | MtrunA17_Chr8g0350951 | 44.358 | 771 | 377 | 17 | 4 | 734 | 281 | 1039 | 0.0 | 630 |
| Msa0432320 | MtrunA17_Chr8g0380631 | 42.255 | 807 | 372 | 19 | 4 | 745 | 72 | 849 | 0.0 | 610 |
| Msa0432320 | MtrunA17_Chr3g0143471 | 42.379 | 807 | 387 | 18 | 4 | 745 | 73 | 866 | 0.0 | 610 |
| Msa0432320 | MtrunA17_Chr5g0398161 | 42.561 | 773 | 384 | 19 | 4 | 734 | 90 | 844 | 0.0 | 601 |
| Msa0432320 | MtrunA17_Chr5g0406161 | 39.925 | 804 | 404 | 16 | 4 | 745 | 86 | 872 | 0.0 | 595 |
| Msa0432320 | MtrunA17_Chr5g0398171 | 42.078 | 770 | 392 | 18 | 4 | 734 | 84 | 838 | 0.0 | 593 |
| Msa0432320 | MtrunA17_Chr2g0330431 | 42.037 | 766 | 375 | 17 | 4 | 745 | 36 | 756 | 0.0 | 565 |
| Msa0432320 | MtrunA17_Chr8g0341931 | 40.209 | 766 | 383 | 20 | 4 | 745 | 39 | 753 | 7.96e-175 | 520 |
| Msa0432320 | MtrunA17_Chr1g0192401 | 31.727 | 249 | 133 | 11 | 430 | 668 | 733 | 954 | 7.92e-22 | 101 |
| Msa0432320 | MtrunA17_Chr2g0295411 | 32.836 | 201 | 103 | 6 | 430 | 625 | 783 | 956 | 1.13e-19 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432320 | AT3G15730.1 | 61.738 | 771 | 257 | 10 | 3 | 745 | 50 | 810 | 0.0 | 969 |
| Msa0432320 | AT1G52570.1 | 60.779 | 770 | 266 | 10 | 3 | 745 | 50 | 810 | 0.0 | 948 |
| Msa0432320 | AT1G52570.3 | 60.779 | 770 | 266 | 10 | 3 | 745 | 50 | 810 | 0.0 | 948 |
| Msa0432320 | AT1G52570.2 | 60.779 | 770 | 266 | 10 | 3 | 745 | 50 | 810 | 0.0 | 948 |
| Msa0432320 | AT5G25370.1 | 60.104 | 767 | 275 | 10 | 3 | 745 | 61 | 820 | 0.0 | 900 |
| Msa0432320 | AT5G25370.3 | 60.104 | 767 | 275 | 10 | 3 | 745 | 61 | 820 | 0.0 | 900 |
| Msa0432320 | AT5G25370.2 | 60.104 | 767 | 275 | 10 | 3 | 745 | 61 | 820 | 0.0 | 900 |
| Msa0432320 | AT5G25370.4 | 60.107 | 747 | 267 | 10 | 23 | 745 | 6 | 745 | 0.0 | 875 |
| Msa0432320 | AT4G11830.1 | 43.742 | 775 | 377 | 19 | 4 | 734 | 55 | 814 | 0.0 | 632 |
| Msa0432320 | AT4G11830.2 | 43.742 | 775 | 377 | 19 | 4 | 734 | 87 | 846 | 0.0 | 632 |
| Msa0432320 | AT4G11840.1 | 42.931 | 778 | 380 | 17 | 4 | 734 | 96 | 856 | 0.0 | 616 |
| Msa0432320 | AT2G42010.1 | 42.448 | 768 | 392 | 15 | 4 | 734 | 319 | 1073 | 0.0 | 615 |
| Msa0432320 | AT4G00240.1 | 42.969 | 768 | 388 | 15 | 4 | 734 | 163 | 917 | 0.0 | 612 |
| Msa0432320 | AT4G00240.3 | 42.969 | 768 | 388 | 15 | 4 | 734 | 11 | 765 | 0.0 | 612 |
| Msa0432320 | AT4G00240.2 | 42.969 | 768 | 388 | 15 | 4 | 734 | 128 | 882 | 0.0 | 612 |
| Msa0432320 | AT2G42010.2 | 41.740 | 793 | 387 | 17 | 4 | 734 | 319 | 1098 | 0.0 | 607 |
| Msa0432320 | AT4G11850.1 | 43.152 | 774 | 383 | 17 | 4 | 734 | 89 | 848 | 0.0 | 604 |
| Msa0432320 | AT4G11840.2 | 42.506 | 774 | 359 | 16 | 4 | 734 | 96 | 826 | 0.0 | 603 |
| Msa0432320 | AT4G35790.2 | 41.583 | 796 | 393 | 14 | 4 | 745 | 80 | 857 | 0.0 | 603 |
| Msa0432320 | AT4G35790.1 | 41.264 | 807 | 391 | 15 | 4 | 745 | 80 | 868 | 0.0 | 596 |
| Msa0432320 | AT1G55180.2 | 39.662 | 769 | 390 | 18 | 4 | 745 | 19 | 740 | 0.0 | 547 |
| Msa0432320 | AT1G55180.1 | 39.662 | 769 | 390 | 18 | 4 | 745 | 41 | 762 | 0.0 | 547 |
| Msa0432320 | AT4G35790.3 | 39.638 | 608 | 307 | 9 | 4 | 559 | 80 | 679 | 1.47e-142 | 434 |
| Msa0432320 | AT4G11830.4 | 42.754 | 552 | 272 | 12 | 4 | 522 | 87 | 627 | 9.32e-141 | 428 |
| Msa0432320 | AT4G11830.3 | 42.435 | 542 | 268 | 12 | 4 | 512 | 87 | 617 | 2.01e-136 | 417 |
| Msa0432320 | AT3G05630.1 | 26.823 | 727 | 341 | 33 | 81 | 690 | 304 | 956 | 3.00e-34 | 141 |
| Msa0432320 | AT3G16785.6 | 35.961 | 203 | 96 | 7 | 429 | 625 | 756 | 930 | 5.96e-22 | 102 |
| Msa0432320 | AT3G16785.5 | 35.961 | 203 | 96 | 7 | 429 | 625 | 756 | 930 | 5.96e-22 | 102 |
| Msa0432320 | AT3G16785.3 | 35.961 | 203 | 96 | 7 | 429 | 625 | 756 | 930 | 6.59e-22 | 102 |
| Msa0432320 | AT3G16785.2 | 35.961 | 203 | 96 | 7 | 429 | 625 | 756 | 930 | 6.59e-22 | 102 |
| Msa0432320 | AT3G16785.1 | 35.961 | 203 | 96 | 7 | 429 | 625 | 756 | 930 | 6.84e-22 | 102 |
| Msa0432320 | AT3G16785.4 | 35.961 | 203 | 96 | 7 | 429 | 625 | 756 | 930 | 7.63e-22 | 102 |
Find 152 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATGCAATTCAAACTTTC+TGG | 0.122895 | 3_2:-84491363 | None:intergenic |
| TCCCTTACCTATCATCATTT+TGG | 0.178826 | 3_2:-84490906 | None:intergenic |
| TTGTATTTGAACATGGATTT+TGG | 0.185371 | 3_2:-84489149 | None:intergenic |
| GCTTGAACTGAAGCACTTTC+AGG | 0.203277 | 3_2:-84490656 | None:intergenic |
| CCCATTGGAGCGACTCTAAT+TGG | 0.224022 | 3_2:+84489028 | Msa0432320:CDS |
| AGCAGTTATGGTTCCATTAT+TGG | 0.224317 | 3_2:-84491490 | None:intergenic |
| AATCCATATATTTGTCCTTT+TGG | 0.234668 | 3_2:-84491279 | None:intergenic |
| ATCGATGCTGGTGCTGCTTC+TGG | 0.242139 | 3_2:+84490329 | Msa0432320:CDS |
| GTCTATTACTGGTGGCTATA+TGG | 0.261291 | 3_2:-84491254 | None:intergenic |
| CATCTTGGTAAAGAGTAATT+TGG | 0.273836 | 3_2:-84489270 | None:intergenic |
| TTAATGTTCTTATGCTTGTT+TGG | 0.298166 | 3_2:+84489524 | Msa0432320:CDS |
| CCAACAGAAGCCGCTGAAAA+AGG | 0.298342 | 3_2:+84490365 | Msa0432320:CDS |
| TGAAAGGTTTCGTTCCATTT+GGG | 0.301315 | 3_2:-84488950 | None:intergenic |
| CCATTATTGGTTACTTGTAT+TGG | 0.306443 | 3_2:-84491477 | None:intergenic |
| CCAATACAAGTAACCAATAA+TGG | 0.313741 | 3_2:+84491477 | Msa0432320:CDS |
| GATACTAAGGCTAAGATTCT+AGG | 0.315033 | 3_2:+84491537 | Msa0432320:CDS |
| TGTCAACAATTATAGTCTTC+TGG | 0.324805 | 3_2:-84489723 | None:intergenic |
| GTGAAAGGTTTCGTTCCATT+TGG | 0.328508 | 3_2:-84488951 | None:intergenic |
| AAGAACATTAACACCTTCAT+TGG | 0.328996 | 3_2:-84489512 | None:intergenic |
| ACATTCTTTAAACAAAATAA+TGG | 0.329312 | 3_2:+84489244 | Msa0432320:CDS |
| GTTGTTCTTGTTGACTTGTT+TGG | 0.332002 | 3_2:-84489457 | None:intergenic |
| TGGAGGAAGGTACTCAGATT+TGG | 0.345102 | 3_2:-84491562 | None:intergenic |
| GGAACCATAACTGCTCTTCC+AGG | 0.349450 | 3_2:+84491498 | Msa0432320:CDS |
| CCACCAAAAGGACAAATATA+TGG | 0.350161 | 3_2:+84491276 | Msa0432320:CDS |
| CCCTTTATGACTTGTTCAAC+TGG | 0.351702 | 3_2:-84489064 | None:intergenic |
| GTTGGAAGAACTAGAATGAT+AGG | 0.353330 | 3_2:+84488923 | Msa0432320:CDS |
| TAATGTTCTTATGCTTGTTT+GGG | 0.358547 | 3_2:+84489525 | Msa0432320:CDS |
| ACTCCATCCAATGGAATATA+CGG | 0.365105 | 3_2:-84489316 | None:intergenic |
| GATATTAAAGTTGAGGATAT+TGG | 0.365230 | 3_2:+84490524 | Msa0432320:CDS |
| TCCAGTTGAACAAGTCATAA+AGG | 0.366172 | 3_2:+84489063 | Msa0432320:CDS |
| ATATAATCACTGTCAGGTTC+TGG | 0.366661 | 3_2:-84490842 | None:intergenic |
| CTTTAAGAAAGATGGCTTGA+TGG | 0.371228 | 3_2:+84489570 | Msa0432320:CDS |
| CAGTTCAAGCAATATTAGAT+TGG | 0.371630 | 3_2:+84490669 | Msa0432320:CDS |
| TTTAGTCCTTGTGACCAGTT+TGG | 0.378654 | 3_2:-84489193 | None:intergenic |
| GTTCCTGACTTTAAGAAAGA+TGG | 0.382115 | 3_2:+84489562 | Msa0432320:CDS |
| CATGGCTAGGTGGTGAGAAT+TGG | 0.390572 | 3_2:-84491582 | None:intergenic |
| TAAAATGACAAGTAATCTCT+TGG | 0.395875 | 3_2:-84490764 | None:intergenic |
| TTACTGGTGGCTATATGGTT+TGG | 0.403321 | 3_2:-84491249 | None:intergenic |
| CAAGATGCACATGTTCTAGA+TGG | 0.408428 | 3_2:+84489286 | Msa0432320:CDS |
| GATGATGAATACATAATCAT+TGG | 0.412861 | 3_2:+84491156 | Msa0432320:CDS |
| TATGAGCACCTTGGAGATAT+TGG | 0.417376 | 3_2:+84491318 | Msa0432320:CDS |
| GTTCATGCCAAAATGATGAT+AGG | 0.420607 | 3_2:+84490899 | Msa0432320:CDS |
| AGAATCTTAGCCTTAGTATC+AGG | 0.421693 | 3_2:-84491534 | None:intergenic |
| CAAGAACAACCATCACTCTT+GGG | 0.423882 | 3_2:+84489470 | Msa0432320:CDS |
| CGGCTTCTGTTGGATCTTGA+GGG | 0.427130 | 3_2:-84490355 | None:intergenic |
| AAATCCTGGAAGAGCAGTTA+TGG | 0.432056 | 3_2:-84491502 | None:intergenic |
| GCACTTTCAGGTATACCTTC+TGG | 0.435666 | 3_2:-84490644 | None:intergenic |
| ATCTTCAGTGACAACTCCTT+TGG | 0.436891 | 3_2:-84490563 | None:intergenic |
| GCGGCTTCTGTTGGATCTTG+AGG | 0.438003 | 3_2:-84490356 | None:intergenic |
| AAGCCATCTTTCTTAAAGTC+AGG | 0.443766 | 3_2:-84489565 | None:intergenic |
| AGATTGGCAAAGAAGGACTA+TGG | 0.445851 | 3_2:+84490685 | Msa0432320:CDS |
| CAATATTAGATTGGCAAAGA+AGG | 0.446472 | 3_2:+84490678 | Msa0432320:CDS |
| CCAATTAGAGTCGCTCCAAT+GGG | 0.447711 | 3_2:-84489028 | None:intergenic |
| GATATTCATTGTAAACTAGA+AGG | 0.448111 | 3_2:+84490134 | Msa0432320:CDS |
| GTTCCGTATATTCCATTGGA+TGG | 0.448817 | 3_2:+84489313 | Msa0432320:CDS |
| TTCTAGGTAGTTCATATGGT+TGG | 0.454363 | 3_2:+84490492 | Msa0432320:CDS |
| CTTGTTTGGATCTCTAATCA+AGG | 0.457534 | 3_2:-84489443 | None:intergenic |
| GTGACAACTCCTTTGGTATG+AGG | 0.458272 | 3_2:-84490556 | None:intergenic |
| CTTTGAGTATATGTCCCAAT+TGG | 0.459345 | 3_2:-84491409 | None:intergenic |
| ACAAGAACAACCATCACTCT+TGG | 0.459719 | 3_2:+84489469 | Msa0432320:CDS |
| CCAGTTGAACAAGTCATAAA+GGG | 0.460625 | 3_2:+84489064 | Msa0432320:CDS |
| CACAACACATCCCATGCAAC+AGG | 0.462297 | 3_2:-84490158 | None:intergenic |
| CGAAACATGCTTGAAGGTAG+TGG | 0.463688 | 3_2:-84490227 | None:intergenic |
| AGAGACAGTGAGATTGCAAT+AGG | 0.465168 | 3_2:+84491216 | Msa0432320:CDS |
| TGAGGAACTCCTTGAAATCC+TGG | 0.466088 | 3_2:-84489220 | None:intergenic |
| ATATCATGCCATGGCTCTCT+AGG | 0.466709 | 3_2:-84490116 | None:intergenic |
| TTCTGTTCCGTATATTCCAT+TGG | 0.467036 | 3_2:+84489309 | Msa0432320:CDS |
| ATTGTTAGCAAGATTGAAGC+TGG | 0.474341 | 3_2:+84490584 | Msa0432320:CDS |
| CTAAAGAGTCCAGGATTTCA+AGG | 0.476603 | 3_2:+84489211 | Msa0432320:CDS |
| CATTGATCTTTGATTTATGT+TGG | 0.476676 | 3_2:-84491184 | None:intergenic |
| TCAGGAAAACATTCAAATCC+TGG | 0.477356 | 3_2:-84491516 | None:intergenic |
| GTTGAAGCCCTTCAAAGAAA+AGG | 0.478206 | 3_2:+84490728 | Msa0432320:CDS |
| CAGTTTCTCTCCACATGGCT+AGG | 0.479672 | 3_2:-84491595 | None:intergenic |
| TCAGGTTCTGGTGCCTCTGT+AGG | 0.480853 | 3_2:-84490830 | None:intergenic |
| AACTGGTTGGTCTGTTTACA+CGG | 0.480935 | 3_2:+84489414 | Msa0432320:CDS |
| CATCTAGAACATGTGCATCT+TGG | 0.481308 | 3_2:-84489285 | None:intergenic |
| ATGGATTTAGACGTGCACTA+TGG | 0.481715 | 3_2:+84491295 | Msa0432320:CDS |
| TCCAATTAGAGTCGCTCCAA+TGG | 0.488605 | 3_2:-84489029 | None:intergenic |
| GAATGATAGGTAGCCCCAAA+TGG | 0.490196 | 3_2:+84488936 | Msa0432320:CDS |
| GATTTAGACAAAGCAAGAGT+TGG | 0.492961 | 3_2:+84488905 | Msa0432320:CDS |
| GGCTAGGTGGTGAGAATTGG+AGG | 0.496635 | 3_2:-84491579 | None:intergenic |
| AAAATGACAAGTAATCTCTT+GGG | 0.497438 | 3_2:-84490763 | None:intergenic |
| TATTCACGAAACATGCTTGA+AGG | 0.498456 | 3_2:-84490233 | None:intergenic |
| GTATGTGCCGGGAAAATGTT+GGG | 0.500103 | 3_2:+84489345 | Msa0432320:CDS |
| TTGTTTAGATCGATCGATGC+TGG | 0.502376 | 3_2:+84490317 | Msa0432320:CDS |
| GATGGAAGAAGTATAGTTCA+AGG | 0.503461 | 3_2:+84489670 | Msa0432320:CDS |
| GTGGGATTGATCTTTGTGAT+GGG | 0.506802 | 3_2:+84489799 | Msa0432320:CDS |
| AGGGCAACATAGTGAATACA+TGG | 0.511698 | 3_2:+84489083 | Msa0432320:CDS |
| GCTCTAATATAATCACTGTC+AGG | 0.514466 | 3_2:-84490848 | None:intergenic |
| TTTGACAGTGAATATAATGT+TGG | 0.517344 | 3_2:-84488996 | None:intergenic |
| TGGAGTAGAACGGTATGTGC+CGG | 0.519752 | 3_2:+84489333 | Msa0432320:CDS |
| CAACATAAATCAAAGATCAA+TGG | 0.522850 | 3_2:+84491185 | Msa0432320:CDS |
| AACTAGAAGGACCTGTTGCA+TGG | 0.522952 | 3_2:+84490147 | Msa0432320:CDS |
| GGAGTAGAACGGTATGTGCC+GGG | 0.525843 | 3_2:+84489334 | Msa0432320:CDS |
| GGTGGGATTGATCTTTGTGA+TGG | 0.527896 | 3_2:+84489798 | Msa0432320:CDS |
| GGTATACCTTCTGGCCACAT+TGG | 0.533593 | 3_2:-84490635 | None:intergenic |
| CGGCAAATCAAAACAACACA+TGG | 0.534970 | 3_2:+84490285 | Msa0432320:CDS |
| CTTAAGAAGAAAGCCAATGA+AGG | 0.539673 | 3_2:+84489499 | Msa0432320:CDS |
| TCTTACCCTCTCGGTTTCCA+AGG | 0.540213 | 3_2:-84490790 | None:intergenic |
| CAAAGATGGGAAAAGCAAGT+TGG | 0.540379 | 3_2:+84490191 | Msa0432320:CDS |
| ACTATACTTCTTCCATCACC+AGG | 0.545798 | 3_2:-84489664 | None:intergenic |
| CTTCCATCACCAGGGTTACG+TGG | 0.548889 | 3_2:-84489655 | None:intergenic |
| TTGATAGAATTAATCAGCAA+TGG | 0.551114 | 3_2:-84491642 | None:intergenic |
| ACTAGAAGGACCTGTTGCAT+GGG | 0.560087 | 3_2:+84490148 | Msa0432320:CDS |
| GTGGATCATCGTCCAATACA+AGG | 0.562412 | 3_2:+84489121 | Msa0432320:CDS |
| TTCATATGGTTGGAAATCAT+CGG | 0.572489 | 3_2:+84490502 | Msa0432320:CDS |
| ACCAGTAATAGACCACCAAA+AGG | 0.573701 | 3_2:+84491264 | Msa0432320:CDS |
| ATGGGTTAATATATTAGATG+TGG | 0.574499 | 3_2:+84489102 | Msa0432320:CDS |
| GTCATTCCAATGTGGCCAGA+AGG | 0.574690 | 3_2:+84490629 | Msa0432320:CDS |
| TACCGTTCTACTCCATCCAA+TGG | 0.576822 | 3_2:-84489325 | None:intergenic |
| GAAAGGTTTCGTTCCATTTG+GGG | 0.577281 | 3_2:-84488949 | None:intergenic |
| TGCTTTGCACCTCATACCAA+AGG | 0.582854 | 3_2:+84490547 | Msa0432320:CDS |
| TGACAAGTAATCTCTTGGGT+TGG | 0.586202 | 3_2:-84490759 | None:intergenic |
| GTCAAACAAGATAACCCCAT+TGG | 0.587028 | 3_2:+84489013 | Msa0432320:CDS |
| ATCATCGGATATTAAAGTTG+AGG | 0.587336 | 3_2:+84490517 | Msa0432320:CDS |
| AAGAAGCTCCCCAAGAGTGA+TGG | 0.594868 | 3_2:-84489479 | None:intergenic |
| TCACAAGGACTAAAGAGTCC+AGG | 0.595640 | 3_2:+84489202 | Msa0432320:CDS |
| TCGTCGAATAGCGTTTATGT+AGG | 0.595975 | 3_2:-84490435 | None:intergenic |
| TGAAAACAAAGGATGTTCCA+TGG | 0.602384 | 3_2:-84489832 | None:intergenic |
| TATTGCCTTGGAAACCGAGA+GGG | 0.604275 | 3_2:+84490785 | Msa0432320:CDS |
| TGCCCACGTAACCCTGGTGA+TGG | 0.604924 | 3_2:+84489652 | Msa0432320:CDS |
| GGTATGTGCCGGGAAAATGT+TGG | 0.606197 | 3_2:+84489344 | Msa0432320:CDS |
| TTTCTCTCCACATGGCTAGG+TGG | 0.613613 | 3_2:-84491592 | None:intergenic |
| GTGAGAATTGTATTTGAACA+TGG | 0.616949 | 3_2:-84489156 | None:intergenic |
| TTACAATGAATATCATGCCA+TGG | 0.618761 | 3_2:-84490125 | None:intergenic |
| ACATTCAGTTTCTCTCCACA+TGG | 0.623036 | 3_2:-84491600 | None:intergenic |
| ATGTGCAGAGTAAATGTGAA+AGG | 0.624116 | 3_2:-84488966 | None:intergenic |
| ATAAATCAAAGATCAATGGA+TGG | 0.626562 | 3_2:+84491189 | Msa0432320:CDS |
| TTCCATCACCAGGGTTACGT+GGG | 0.629779 | 3_2:-84489654 | None:intergenic |
| AAGAACAACCATCACTCTTG+GGG | 0.634263 | 3_2:+84489471 | Msa0432320:CDS |
| GCACTATGGTATGAGCACCT+TGG | 0.638088 | 3_2:+84491309 | Msa0432320:CDS |
| AATGATCCAAACTGGTCACA+AGG | 0.638447 | 3_2:+84489187 | Msa0432320:CDS |
| CAATTGGGACATATACTCAA+AGG | 0.640794 | 3_2:+84491410 | Msa0432320:CDS |
| AGGTGGTGAGAATTGGAGGA+AGG | 0.643329 | 3_2:-84491575 | None:intergenic |
| GAATGAATATACTCCTACAG+AGG | 0.643986 | 3_2:+84490817 | Msa0432320:CDS |
| TTGTATCACCAATATCTCCA+AGG | 0.650254 | 3_2:-84491326 | None:intergenic |
| CTTGTATTGGATAATGCATG+AGG | 0.661800 | 3_2:-84491464 | None:intergenic |
| TCGTGTATCGAATGTTGCCA+CGG | 0.661868 | 3_2:+84490265 | Msa0432320:CDS |
| AAAGATTCCTGCTTAAAACA+AGG | 0.666302 | 3_2:-84491671 | None:intergenic |
| ATTCTCACCACCTAGCCATG+TGG | 0.671398 | 3_2:+84491585 | Msa0432320:exon |
| TTCCATTGGATGGAGTAGAA+CGG | 0.671871 | 3_2:+84489323 | Msa0432320:CDS |
| GGTGCTTCTATTAACAAAGG+TGG | 0.672280 | 3_2:+84490092 | Msa0432320:intron |
| ACAGGTGCTTCTATTAACAA+AGG | 0.672622 | 3_2:+84490089 | Msa0432320:intron |
| AAGTTGCTAGTTCTGCACAA+TGG | 0.673752 | 3_2:+84489749 | Msa0432320:CDS |
| TGATGGGAGATATGATACCA+TGG | 0.695563 | 3_2:+84489815 | Msa0432320:CDS |
| CTATACTTCTTCCATCACCA+GGG | 0.698859 | 3_2:-84489663 | None:intergenic |
| AAGGTGGTCCTAGAGAGCCA+TGG | 0.705923 | 3_2:+84490108 | Msa0432320:CDS |
| GGGCAACATAGTGAATACAT+GGG | 0.707757 | 3_2:+84489084 | Msa0432320:CDS |
| CAATTAGAGTCGCTCCAATG+GGG | 0.713373 | 3_2:-84489027 | None:intergenic |
| TTATTGCCTTGGAAACCGAG+AGG | 0.718876 | 3_2:+84490784 | Msa0432320:CDS |
| TGTACATTGTCATTCCAATG+TGG | 0.747438 | 3_2:+84490621 | Msa0432320:CDS |
| GATCATCGTCCAATACAAGG+CGG | 0.779275 | 3_2:+84489124 | Msa0432320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTCTTTAAACAAAATAA+TGG | + | chr3_2:84489244-84489263 | Msa0432320:CDS | 15.0% |
| !! | AAAATATAAAATATTCCAAC+AGG | + | chr3_2:84490071-84490090 | Msa0432320:intron | 15.0% |
| !! | AATAAATGTAAAATAGAAAC+AGG | - | chr3_2:84490948-84490967 | None:intergenic | 15.0% |
| !!! | TAATAAATTTTCTTTTGCAA+AGG | - | chr3_2:84491089-84491108 | None:intergenic | 15.0% |
| !!! | ATTGAAAATCAGTATTTTCT+AGG | + | chr3_2:84490476-84490495 | Msa0432320:CDS | 20.0% |
| !!! | TTGAACTTCAAATTTTATAG+AGG | - | chr3_2:84491719-84491738 | None:intergenic | 20.0% |
| ! | TTTGACAGTGAATATAATGT+TGG | - | chr3_2:84488999-84489018 | None:intergenic | 25.0% |
| !! | ATGGGTTAATATATTAGATG+TGG | + | chr3_2:84489102-84489121 | Msa0432320:CDS | 25.0% |
| !! | TTGTATTTGAACATGGATTT+TGG | - | chr3_2:84489152-84489171 | None:intergenic | 25.0% |
| ! | ATGTTAAAAATGATCCAAAC+TGG | + | chr3_2:84489179-84489198 | Msa0432320:CDS | 25.0% |
| !!! | TTTTGTTTAAAGAATGTGTG+AGG | - | chr3_2:84489241-84489260 | None:intergenic | 25.0% |
| !!! | AAGCATTTTATTTGCATAAC+TGG | + | chr3_2:84489397-84489416 | Msa0432320:CDS | 25.0% |
| !!! | ATTTTATTTGCATAACTGGT+TGG | + | chr3_2:84489401-84489420 | Msa0432320:CDS | 25.0% |
| ! | TTAATGTTCTTATGCTTGTT+TGG | + | chr3_2:84489524-84489543 | Msa0432320:CDS | 25.0% |
| ! | TAATGTTCTTATGCTTGTTT+GGG | + | chr3_2:84489525-84489544 | Msa0432320:CDS | 25.0% |
| ! | GTATTCAAAGTTGAAAACAA+AGG | - | chr3_2:84489846-84489865 | None:intergenic | 25.0% |
| ! | AGGACTTAATTATGAAATGT+TGG | + | chr3_2:84490028-84490047 | Msa0432320:intron | 25.0% |
| ! | GATATTCATTGTAAACTAGA+AGG | + | chr3_2:84490134-84490153 | Msa0432320:CDS | 25.0% |
| !! | TATTTTCTAGGTAGTTCATA+TGG | + | chr3_2:84490488-84490507 | Msa0432320:CDS | 25.0% |
| ! | GATATTAAAGTTGAGGATAT+TGG | + | chr3_2:84490524-84490543 | Msa0432320:CDS | 25.0% |
| ! | AAAATGACAAGTAATCTCTT+GGG | - | chr3_2:84490766-84490785 | None:intergenic | 25.0% |
| ! | TAAAATGACAAGTAATCTCT+TGG | - | chr3_2:84490767-84490786 | None:intergenic | 25.0% |
| ! | GAAACAGGTAATATATATGT+TGG | - | chr3_2:84490933-84490952 | None:intergenic | 25.0% |
| !!! | ATTGGAAAGTGTCAATTTAA+TGG | - | chr3_2:84491051-84491070 | None:intergenic | 25.0% |
| ! | GATGATGAATACATAATCAT+TGG | + | chr3_2:84491156-84491175 | Msa0432320:CDS | 25.0% |
| !! | CATTGATCTTTGATTTATGT+TGG | - | chr3_2:84491187-84491206 | None:intergenic | 25.0% |
| ! | CAACATAAATCAAAGATCAA+TGG | + | chr3_2:84491185-84491204 | Msa0432320:CDS | 25.0% |
| ! | ATAAATCAAAGATCAATGGA+TGG | + | chr3_2:84491189-84491208 | Msa0432320:CDS | 25.0% |
| !! | AATCCATATATTTGTCCTTT+TGG | - | chr3_2:84491282-84491301 | None:intergenic | 25.0% |
| ! | TTAATGCAATTCAAACTTTC+TGG | - | chr3_2:84491366-84491385 | None:intergenic | 25.0% |
| ! | TTGATAGAATTAATCAGCAA+TGG | - | chr3_2:84491645-84491664 | None:intergenic | 25.0% |
| !! | ACTTCAAATTTTATAGAGGT+AGG | - | chr3_2:84491715-84491734 | None:intergenic | 25.0% |
| GTGAGAATTGTATTTGAACA+TGG | - | chr3_2:84489159-84489178 | None:intergenic | 30.0% | |
| CATCTTGGTAAAGAGTAATT+TGG | - | chr3_2:84489273-84489292 | None:intergenic | 30.0% | |
| AAGAACATTAACACCTTCAT+TGG | - | chr3_2:84489515-84489534 | None:intergenic | 30.0% | |
| TGTCAACAATTATAGTCTTC+TGG | - | chr3_2:84489726-84489745 | None:intergenic | 30.0% | |
| !! | AGAACAATCACAAGTTTTGT+TGG | + | chr3_2:84489777-84489796 | Msa0432320:CDS | 30.0% |
| GCATGCATATTTACAATCTT+AGG | + | chr3_2:84490008-84490027 | Msa0432320:intron | 30.0% | |
| TTACAATGAATATCATGCCA+TGG | - | chr3_2:84490128-84490147 | None:intergenic | 30.0% | |
| TTCATATGGTTGGAAATCAT+CGG | + | chr3_2:84490502-84490521 | Msa0432320:CDS | 30.0% | |
| ATCATCGGATATTAAAGTTG+AGG | + | chr3_2:84490517-84490536 | Msa0432320:CDS | 30.0% | |
| CAGTTCAAGCAATATTAGAT+TGG | + | chr3_2:84490669-84490688 | Msa0432320:CDS | 30.0% | |
| CAATATTAGATTGGCAAAGA+AGG | + | chr3_2:84490678-84490697 | Msa0432320:CDS | 30.0% | |
| ! | TCTGATTCCTTTTCTTTGAA+GGG | - | chr3_2:84490738-84490757 | None:intergenic | 30.0% |
| !!! | TACTTGTCATTTTATTGCCT+TGG | + | chr3_2:84490773-84490792 | Msa0432320:CDS | 30.0% |
| AGGTGTATGTGCTAATTAAT+TGG | - | chr3_2:84491069-84491088 | None:intergenic | 30.0% | |
| ! | CCATTATTGGTTACTTGTAT+TGG | - | chr3_2:84491480-84491499 | None:intergenic | 30.0% |
| CCAATACAAGTAACCAATAA+TGG | + | chr3_2:84491477-84491496 | Msa0432320:CDS | 30.0% | |
| ! | TGAATGTTTTCCTGATACTA+AGG | + | chr3_2:84491524-84491543 | Msa0432320:CDS | 30.0% |
| AAAGATTCCTGCTTAAAACA+AGG | - | chr3_2:84491674-84491693 | None:intergenic | 30.0% | |
| GATTTAGACAAAGCAAGAGT+TGG | + | chr3_2:84488905-84488924 | Msa0432320:CDS | 35.0% | |
| GTTGGAAGAACTAGAATGAT+AGG | + | chr3_2:84488923-84488942 | Msa0432320:CDS | 35.0% | |
| TGAAAGGTTTCGTTCCATTT+GGG | - | chr3_2:84488953-84488972 | None:intergenic | 35.0% | |
| ATGTGCAGAGTAAATGTGAA+AGG | - | chr3_2:84488969-84488988 | None:intergenic | 35.0% | |
| TCCAGTTGAACAAGTCATAA+AGG | + | chr3_2:84489063-84489082 | Msa0432320:CDS | 35.0% | |
| CCAGTTGAACAAGTCATAAA+GGG | + | chr3_2:84489064-84489083 | Msa0432320:CDS | 35.0% | |
| TTCTGTTCCGTATATTCCAT+TGG | + | chr3_2:84489309-84489328 | Msa0432320:CDS | 35.0% | |
| ACTCCATCCAATGGAATATA+CGG | - | chr3_2:84489319-84489338 | None:intergenic | 35.0% | |
| CTTGTTTGGATCTCTAATCA+AGG | - | chr3_2:84489446-84489465 | None:intergenic | 35.0% | |
| !! | GTTGTTCTTGTTGACTTGTT+TGG | - | chr3_2:84489460-84489479 | None:intergenic | 35.0% |
| CTTAAGAAGAAAGCCAATGA+AGG | + | chr3_2:84489499-84489518 | Msa0432320:CDS | 35.0% | |
| ! | GTTCCTGACTTTAAGAAAGA+TGG | + | chr3_2:84489562-84489581 | Msa0432320:CDS | 35.0% |
| AAGCCATCTTTCTTAAAGTC+AGG | - | chr3_2:84489568-84489587 | None:intergenic | 35.0% | |
| ! | CTTTAAGAAAGATGGCTTGA+TGG | + | chr3_2:84489570-84489589 | Msa0432320:CDS | 35.0% |
| ! | GATGGAAGAAGTATAGTTCA+AGG | + | chr3_2:84489670-84489689 | Msa0432320:CDS | 35.0% |
| !!! | ACAATCACAAGTTTTGTTGG+TGG | + | chr3_2:84489780-84489799 | Msa0432320:CDS | 35.0% |
| !!! | CAATCACAAGTTTTGTTGGT+GGG | + | chr3_2:84489781-84489800 | Msa0432320:CDS | 35.0% |
| TGAAAACAAAGGATGTTCCA+TGG | - | chr3_2:84489835-84489854 | None:intergenic | 35.0% | |
| TTTCATCAACCAAATTTCCC+AGG | + | chr3_2:84489882-84489901 | Msa0432320:intron | 35.0% | |
| AACTAGTTCCAAAATCACCT+GGG | - | chr3_2:84489902-84489921 | None:intergenic | 35.0% | |
| AAACTAGTTCCAAAATCACC+TGG | - | chr3_2:84489903-84489922 | None:intergenic | 35.0% | |
| !! | TTGTTAATAGAAGCACCTGT+TGG | - | chr3_2:84490089-84490108 | None:intergenic | 35.0% |
| ACAGGTGCTTCTATTAACAA+AGG | + | chr3_2:84490089-84490108 | Msa0432320:intron | 35.0% | |
| ! | TGTGCAATTTTGAGCAAAGA+TGG | + | chr3_2:84490177-84490196 | Msa0432320:CDS | 35.0% |
| ! | GTGCAATTTTGAGCAAAGAT+GGG | + | chr3_2:84490178-84490197 | Msa0432320:CDS | 35.0% |
| TATTCACGAAACATGCTTGA+AGG | - | chr3_2:84490236-84490255 | None:intergenic | 35.0% | |
| !!! | AGTAACAAGACCTTTTTCAG+CGG | - | chr3_2:84490378-84490397 | None:intergenic | 35.0% |
| TTCTAGGTAGTTCATATGGT+TGG | + | chr3_2:84490492-84490511 | Msa0432320:CDS | 35.0% | |
| ATTGTTAGCAAGATTGAAGC+TGG | + | chr3_2:84490584-84490603 | Msa0432320:CDS | 35.0% | |
| TGTACATTGTCATTCCAATG+TGG | + | chr3_2:84490621-84490640 | Msa0432320:CDS | 35.0% | |
| ! | CTCTGATTCCTTTTCTTTGA+AGG | - | chr3_2:84490739-84490758 | None:intergenic | 35.0% |
| ! | CATTCATTTTCTTACCCTCT+CGG | - | chr3_2:84490802-84490821 | None:intergenic | 35.0% |
| GAATGAATATACTCCTACAG+AGG | + | chr3_2:84490817-84490836 | Msa0432320:CDS | 35.0% | |
| ATATAATCACTGTCAGGTTC+TGG | - | chr3_2:84490845-84490864 | None:intergenic | 35.0% | |
| GCTCTAATATAATCACTGTC+AGG | - | chr3_2:84490851-84490870 | None:intergenic | 35.0% | |
| GTTCATGCCAAAATGATGAT+AGG | + | chr3_2:84490899-84490918 | Msa0432320:CDS | 35.0% | |
| TGCCAAAATGATGATAGGTA+AGG | + | chr3_2:84490904-84490923 | Msa0432320:intron | 35.0% | |
| GCCAAAATGATGATAGGTAA+GGG | + | chr3_2:84490905-84490924 | Msa0432320:intron | 35.0% | |
| ! | TCCCTTACCTATCATCATTT+TGG | - | chr3_2:84490909-84490928 | None:intergenic | 35.0% |
| AACGCAGTTCAAATATCTTC+GGG | - | chr3_2:84491001-84491020 | None:intergenic | 35.0% | |
| GAACGCAGTTCAAATATCTT+CGG | - | chr3_2:84491002-84491021 | None:intergenic | 35.0% | |
| TATTTGAACTGCGTTCTTTG+AGG | + | chr3_2:84491006-84491025 | Msa0432320:intron | 35.0% | |
| ! | CCATATATTTGTCCTTTTGG+TGG | - | chr3_2:84491279-84491298 | None:intergenic | 35.0% |
| CCACCAAAAGGACAAATATA+TGG | + | chr3_2:84491276-84491295 | Msa0432320:CDS | 35.0% | |
| TTGTATCACCAATATCTCCA+AGG | - | chr3_2:84491329-84491348 | None:intergenic | 35.0% | |
| CTTTGAGTATATGTCCCAAT+TGG | - | chr3_2:84491412-84491431 | None:intergenic | 35.0% | |
| CAATTGGGACATATACTCAA+AGG | + | chr3_2:84491410-84491429 | Msa0432320:CDS | 35.0% | |
| CTTGTATTGGATAATGCATG+AGG | - | chr3_2:84491467-84491486 | None:intergenic | 35.0% | |
| AGCAGTTATGGTTCCATTAT+TGG | - | chr3_2:84491493-84491512 | None:intergenic | 35.0% | |
| TCAGGAAAACATTCAAATCC+TGG | - | chr3_2:84491519-84491538 | None:intergenic | 35.0% | |
| !! | AGAATCTTAGCCTTAGTATC+AGG | - | chr3_2:84491537-84491556 | None:intergenic | 35.0% |
| GATACTAAGGCTAAGATTCT+AGG | + | chr3_2:84491537-84491556 | Msa0432320:CDS | 35.0% | |
| !!! | AGTAACACCTTGTTTTAAGC+AGG | + | chr3_2:84491664-84491683 | Msa0432320:three_prime_UTR | 35.0% |
| GAAAGGTTTCGTTCCATTTG+GGG | - | chr3_2:84488952-84488971 | None:intergenic | 40.0% | |
| GTGAAAGGTTTCGTTCCATT+TGG | - | chr3_2:84488954-84488973 | None:intergenic | 40.0% | |
| GTCAAACAAGATAACCCCAT+TGG | + | chr3_2:84489013-84489032 | Msa0432320:CDS | 40.0% | |
| !! | CCCTTTATGACTTGTTCAAC+TGG | - | chr3_2:84489067-84489086 | None:intergenic | 40.0% |
| AGGGCAACATAGTGAATACA+TGG | + | chr3_2:84489083-84489102 | Msa0432320:CDS | 40.0% | |
| GGGCAACATAGTGAATACAT+GGG | + | chr3_2:84489084-84489103 | Msa0432320:CDS | 40.0% | |
| !!! | ATTTTGGAACCGCCTTGTAT+TGG | - | chr3_2:84489136-84489155 | None:intergenic | 40.0% |
| AATGATCCAAACTGGTCACA+AGG | + | chr3_2:84489187-84489206 | Msa0432320:CDS | 40.0% | |
| TTTAGTCCTTGTGACCAGTT+TGG | - | chr3_2:84489196-84489215 | None:intergenic | 40.0% | |
| CTAAAGAGTCCAGGATTTCA+AGG | + | chr3_2:84489211-84489230 | Msa0432320:CDS | 40.0% | |
| ! | CATCTAGAACATGTGCATCT+TGG | - | chr3_2:84489288-84489307 | None:intergenic | 40.0% |
| ! | CAAGATGCACATGTTCTAGA+TGG | + | chr3_2:84489286-84489305 | Msa0432320:CDS | 40.0% |
| GTTCCGTATATTCCATTGGA+TGG | + | chr3_2:84489313-84489332 | Msa0432320:CDS | 40.0% | |
| TTCCATTGGATGGAGTAGAA+CGG | + | chr3_2:84489323-84489342 | Msa0432320:CDS | 40.0% | |
| ! | GTATCTTCCCAACATTTTCC+CGG | - | chr3_2:84489355-84489374 | None:intergenic | 40.0% |
| !! | AACTGGTTGGTCTGTTTACA+CGG | + | chr3_2:84489414-84489433 | Msa0432320:CDS | 40.0% |
| ACAAGAACAACCATCACTCT+TGG | + | chr3_2:84489469-84489488 | Msa0432320:CDS | 40.0% | |
| CAAGAACAACCATCACTCTT+GGG | + | chr3_2:84489470-84489489 | Msa0432320:CDS | 40.0% | |
| AAGAACAACCATCACTCTTG+GGG | + | chr3_2:84489471-84489490 | Msa0432320:CDS | 40.0% | |
| CTATACTTCTTCCATCACCA+GGG | - | chr3_2:84489666-84489685 | None:intergenic | 40.0% | |
| ACTATACTTCTTCCATCACC+AGG | - | chr3_2:84489667-84489686 | None:intergenic | 40.0% | |
| !! | AAGTTGCTAGTTCTGCACAA+TGG | + | chr3_2:84489749-84489768 | Msa0432320:CDS | 40.0% |
| GTGGGATTGATCTTTGTGAT+GGG | + | chr3_2:84489799-84489818 | Msa0432320:CDS | 40.0% | |
| TGATGGGAGATATGATACCA+TGG | + | chr3_2:84489815-84489834 | Msa0432320:CDS | 40.0% | |
| CCAAAATCACCTGGGAAATT+TGG | - | chr3_2:84489894-84489913 | None:intergenic | 40.0% | |
| ! | CCAAATTTCCCAGGTGATTT+TGG | + | chr3_2:84489891-84489910 | Msa0432320:intron | 40.0% |
| GGTGCTTCTATTAACAAAGG+TGG | + | chr3_2:84490092-84490111 | Msa0432320:intron | 40.0% | |
| CAAAGATGGGAAAAGCAAGT+TGG | + | chr3_2:84490191-84490210 | Msa0432320:CDS | 40.0% | |
| !!! | TGTGTTGTTTTGATTTGCCG+TGG | - | chr3_2:84490285-84490304 | None:intergenic | 40.0% |
| CGGCAAATCAAAACAACACA+TGG | + | chr3_2:84490285-84490304 | Msa0432320:CDS | 40.0% | |
| TTGTTTAGATCGATCGATGC+TGG | + | chr3_2:84490317-84490336 | Msa0432320:CDS | 40.0% | |
| !! | GCTGAAAAAGGTCTTGTTAC+TGG | + | chr3_2:84490377-84490396 | Msa0432320:CDS | 40.0% |
| TCGTCGAATAGCGTTTATGT+AGG | - | chr3_2:84490438-84490457 | None:intergenic | 40.0% | |
| ATCTTCAGTGACAACTCCTT+TGG | - | chr3_2:84490566-84490585 | None:intergenic | 40.0% | |
| AGATTGGCAAAGAAGGACTA+TGG | + | chr3_2:84490685-84490704 | Msa0432320:CDS | 40.0% | |
| GTTGAAGCCCTTCAAAGAAA+AGG | + | chr3_2:84490728-84490747 | Msa0432320:CDS | 40.0% | |
| TGACAAGTAATCTCTTGGGT+TGG | - | chr3_2:84490762-84490781 | None:intergenic | 40.0% | |
| AGAGACAGTGAGATTGCAAT+AGG | + | chr3_2:84491216-84491235 | Msa0432320:CDS | 40.0% | |
| TTACTGGTGGCTATATGGTT+TGG | - | chr3_2:84491252-84491271 | None:intergenic | 40.0% | |
| GTCTATTACTGGTGGCTATA+TGG | - | chr3_2:84491257-84491276 | None:intergenic | 40.0% | |
| !! | TTTTGGTGGTCTATTACTGG+TGG | - | chr3_2:84491265-84491284 | None:intergenic | 40.0% |
| ACCAGTAATAGACCACCAAA+AGG | + | chr3_2:84491264-84491283 | Msa0432320:CDS | 40.0% | |
| !! | TCCTTTTGGTGGTCTATTAC+TGG | - | chr3_2:84491268-84491287 | None:intergenic | 40.0% |
| ATGGATTTAGACGTGCACTA+TGG | + | chr3_2:84491295-84491314 | Msa0432320:CDS | 40.0% | |
| TATGAGCACCTTGGAGATAT+TGG | + | chr3_2:84491318-84491337 | Msa0432320:CDS | 40.0% | |
| ! | ATCGTTTTGCTGAGACCAAT+TGG | + | chr3_2:84491394-84491413 | Msa0432320:CDS | 40.0% |
| ! | TCGTTTTGCTGAGACCAATT+GGG | + | chr3_2:84491395-84491414 | Msa0432320:CDS | 40.0% |
| AAATCCTGGAAGAGCAGTTA+TGG | - | chr3_2:84491505-84491524 | None:intergenic | 40.0% | |
| ACATTCAGTTTCTCTCCACA+TGG | - | chr3_2:84491603-84491622 | None:intergenic | 40.0% | |
| GAATGATAGGTAGCCCCAAA+TGG | + | chr3_2:84488936-84488955 | Msa0432320:CDS | 45.0% | |
| CAATTAGAGTCGCTCCAATG+GGG | - | chr3_2:84489030-84489049 | None:intergenic | 45.0% | |
| CCAATTAGAGTCGCTCCAAT+GGG | - | chr3_2:84489031-84489050 | None:intergenic | 45.0% | |
| TCCAATTAGAGTCGCTCCAA+TGG | - | chr3_2:84489032-84489051 | None:intergenic | 45.0% | |
| GTGGATCATCGTCCAATACA+AGG | + | chr3_2:84489121-84489140 | Msa0432320:CDS | 45.0% | |
| GATCATCGTCCAATACAAGG+CGG | + | chr3_2:84489124-84489143 | Msa0432320:CDS | 45.0% | |
| TCACAAGGACTAAAGAGTCC+AGG | + | chr3_2:84489202-84489221 | Msa0432320:CDS | 45.0% | |
| TGAGGAACTCCTTGAAATCC+TGG | - | chr3_2:84489223-84489242 | None:intergenic | 45.0% | |
| TACCGTTCTACTCCATCCAA+TGG | - | chr3_2:84489328-84489347 | None:intergenic | 45.0% | |
| GTATGTGCCGGGAAAATGTT+GGG | + | chr3_2:84489345-84489364 | Msa0432320:CDS | 45.0% | |
| GGTGGGATTGATCTTTGTGA+TGG | + | chr3_2:84489798-84489817 | Msa0432320:CDS | 45.0% | |
| ATATCATGCCATGGCTCTCT+AGG | - | chr3_2:84490119-84490138 | None:intergenic | 45.0% | |
| AACTAGAAGGACCTGTTGCA+TGG | + | chr3_2:84490147-84490166 | Msa0432320:CDS | 45.0% | |
| ACTAGAAGGACCTGTTGCAT+GGG | + | chr3_2:84490148-84490167 | Msa0432320:CDS | 45.0% | |
| CGAAACATGCTTGAAGGTAG+TGG | - | chr3_2:84490230-84490249 | None:intergenic | 45.0% | |
| TCGTGTATCGAATGTTGCCA+CGG | + | chr3_2:84490265-84490284 | Msa0432320:CDS | 45.0% | |
| TGCTTTGCACCTCATACCAA+AGG | + | chr3_2:84490547-84490566 | Msa0432320:CDS | 45.0% | |
| GTGACAACTCCTTTGGTATG+AGG | - | chr3_2:84490559-84490578 | None:intergenic | 45.0% | |
| ! | GCACTTTCAGGTATACCTTC+TGG | - | chr3_2:84490647-84490666 | None:intergenic | 45.0% |
| ! | GCTTGAACTGAAGCACTTTC+AGG | - | chr3_2:84490659-84490678 | None:intergenic | 45.0% |
| TTATTGCCTTGGAAACCGAG+AGG | + | chr3_2:84490784-84490803 | Msa0432320:CDS | 45.0% | |
| TATTGCCTTGGAAACCGAGA+GGG | + | chr3_2:84490785-84490804 | Msa0432320:CDS | 45.0% | |
| !! | TGGAGGAAGGTACTCAGATT+TGG | - | chr3_2:84491565-84491584 | None:intergenic | 45.0% |
| CCCATTGGAGCGACTCTAAT+TGG | + | chr3_2:84489028-84489047 | Msa0432320:CDS | 50.0% | |
| TGGAGTAGAACGGTATGTGC+CGG | + | chr3_2:84489333-84489352 | Msa0432320:CDS | 50.0% | |
| GGTATGTGCCGGGAAAATGT+TGG | + | chr3_2:84489344-84489363 | Msa0432320:CDS | 50.0% | |
| AAGAAGCTCCCCAAGAGTGA+TGG | - | chr3_2:84489482-84489501 | None:intergenic | 50.0% | |
| TTCCATCACCAGGGTTACGT+GGG | - | chr3_2:84489657-84489676 | None:intergenic | 50.0% | |
| CACAACACATCCCATGCAAC+AGG | - | chr3_2:84490161-84490180 | None:intergenic | 50.0% | |
| CGGCTTCTGTTGGATCTTGA+GGG | - | chr3_2:84490358-84490377 | None:intergenic | 50.0% | |
| !!! | CCTTTTTCAGCGGCTTCTGT+TGG | - | chr3_2:84490368-84490387 | None:intergenic | 50.0% |
| CCAACAGAAGCCGCTGAAAA+AGG | + | chr3_2:84490365-84490384 | Msa0432320:CDS | 50.0% | |
| GTCATTCCAATGTGGCCAGA+AGG | + | chr3_2:84490629-84490648 | Msa0432320:CDS | 50.0% | |
| GGTATACCTTCTGGCCACAT+TGG | - | chr3_2:84490638-84490657 | None:intergenic | 50.0% | |
| TCTTACCCTCTCGGTTTCCA+AGG | - | chr3_2:84490793-84490812 | None:intergenic | 50.0% | |
| GCACTATGGTATGAGCACCT+TGG | + | chr3_2:84491309-84491328 | Msa0432320:CDS | 50.0% | |
| GGAACCATAACTGCTCTTCC+AGG | + | chr3_2:84491498-84491517 | Msa0432320:CDS | 50.0% | |
| AGGTGGTGAGAATTGGAGGA+AGG | - | chr3_2:84491578-84491597 | None:intergenic | 50.0% | |
| CATGGCTAGGTGGTGAGAAT+TGG | - | chr3_2:84491585-84491604 | None:intergenic | 50.0% | |
| ATTCTCACCACCTAGCCATG+TGG | + | chr3_2:84491585-84491604 | Msa0432320:exon | 50.0% | |
| TTTCTCTCCACATGGCTAGG+TGG | - | chr3_2:84491595-84491614 | None:intergenic | 50.0% | |
| CAGTTTCTCTCCACATGGCT+AGG | - | chr3_2:84491598-84491617 | None:intergenic | 50.0% | |
| GGAGTAGAACGGTATGTGCC+GGG | + | chr3_2:84489334-84489353 | Msa0432320:CDS | 55.0% | |
| ! | GTTTTGTGCCCACGTAACCC+TGG | + | chr3_2:84489646-84489665 | Msa0432320:CDS | 55.0% |
| CTTCCATCACCAGGGTTACG+TGG | - | chr3_2:84489658-84489677 | None:intergenic | 55.0% | |
| AAGGTGGTCCTAGAGAGCCA+TGG | + | chr3_2:84490108-84490127 | Msa0432320:CDS | 55.0% | |
| !! | ATCGATGCTGGTGCTGCTTC+TGG | + | chr3_2:84490329-84490348 | Msa0432320:CDS | 55.0% |
| GCGGCTTCTGTTGGATCTTG+AGG | - | chr3_2:84490359-84490378 | None:intergenic | 55.0% | |
| ! | TCAGGTTCTGGTGCCTCTGT+AGG | - | chr3_2:84490833-84490852 | None:intergenic | 55.0% |
| GGCTAGGTGGTGAGAATTGG+AGG | - | chr3_2:84491582-84491601 | None:intergenic | 55.0% | |
| TGCCCACGTAACCCTGGTGA+TGG | + | chr3_2:84489652-84489671 | Msa0432320:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 84488884 | 84491764 | 84488884 | ID=Msa0432320;Name=Msa0432320 |
| chr3_2 | mRNA | 84488884 | 84491764 | 84488884 | ID=Msa0432320-mRNA-1;Parent=Msa0432320;Name=Msa0432320-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.66|1|1|1|3|165|745 |
| chr3_2 | exon | 84488884 | 84489847 | 84488884 | ID=Msa0432320-mRNA-1:exon:23900;Parent=Msa0432320-mRNA-1 |
| chr3_2 | exon | 84490093 | 84490920 | 84490093 | ID=Msa0432320-mRNA-1:exon:23901;Parent=Msa0432320-mRNA-1 |
| chr3_2 | exon | 84491154 | 84491764 | 84491154 | ID=Msa0432320-mRNA-1:exon:23902;Parent=Msa0432320-mRNA-1 |
| chr3_2 | CDS | 84488884 | 84489847 | 84488884 | ID=Msa0432320-mRNA-1:cds;Parent=Msa0432320-mRNA-1 |
| chr3_2 | CDS | 84490093 | 84490920 | 84490093 | ID=Msa0432320-mRNA-1:cds;Parent=Msa0432320-mRNA-1 |
| chr3_2 | CDS | 84491154 | 84491599 | 84491154 | ID=Msa0432320-mRNA-1:cds;Parent=Msa0432320-mRNA-1 |
| chr3_2 | three_prime_UTR | 84491600 | 84491764 | 84491600 | ID=Msa0432320-mRNA-1:three_prime_utr;Parent=Msa0432320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
