Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435630 | XP_024633544.2 | 93.947 | 826 | 23 | 1 | 1 | 799 | 1 | 826 | 0.0 | 1614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435630 | sp|P93400|PLDA1_TOBAC | 66.052 | 813 | 250 | 10 | 4 | 799 | 5 | 808 | 0.0 | 1089 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435630 | A0A396J1N9 | 93.947 | 826 | 23 | 1 | 1 | 799 | 1 | 826 | 0.0 | 1614 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1435630 | 0.893277 | 7.300707e-75 | -8.615850e-47 |
| Msa0029960 | Msa1435630 | 0.849191 | 3.789225e-60 | -8.615850e-47 |
| Msa0029990 | Msa1435630 | 0.848907 | 4.544117e-60 | -8.615850e-47 |
| Msa0043290 | Msa1435630 | 0.805972 | 1.031185e-49 | -8.615850e-47 |
| Msa0053850 | Msa1435630 | 0.806158 | 9.424884e-50 | -8.615850e-47 |
| Msa0064120 | Msa1435630 | 0.886426 | 3.454722e-72 | -8.615850e-47 |
| Msa0071840 | Msa1435630 | 0.849475 | 3.156907e-60 | -8.615850e-47 |
| Msa0098050 | Msa1435630 | 0.811149 | 8.087233e-51 | -8.615850e-47 |
| Msa0108880 | Msa1435630 | 0.868874 | 4.721452e-66 | -8.615850e-47 |
| Msa1356220 | Msa1435630 | 0.824689 | 7.045092e-54 | -8.615850e-47 |
| Msa1356350 | Msa1435630 | 0.815732 | 7.951202e-52 | -8.615850e-47 |
| Msa1360930 | Msa1435630 | 0.846133 | 2.630470e-59 | -8.615850e-47 |
| Msa1401520 | Msa1435630 | 0.806875 | 6.650406e-50 | -8.615850e-47 |
| Msa1404480 | Msa1435630 | 0.805779 | 1.132174e-49 | -8.615850e-47 |
| Msa1429860 | Msa1435630 | 0.980813 | 4.286617e-151 | -8.615850e-47 |
| Msa1435630 | Msa1462560 | 0.836047 | 1.176327e-56 | -8.615850e-47 |
| Msa0609300 | Msa1435630 | 0.835066 | 2.082521e-56 | -8.615850e-47 |
| Msa0627090 | Msa1435630 | 0.802476 | 5.509129e-49 | -8.615850e-47 |
| Msa0649840 | Msa1435630 | 0.817962 | 2.511337e-52 | -8.615850e-47 |
| Msa0655910 | Msa1435630 | 0.815784 | 7.742209e-52 | -8.615850e-47 |
| Msa0665160 | Msa1435630 | 0.801502 | 8.735597e-49 | -8.615850e-47 |
| Msa0691910 | Msa1435630 | 0.835750 | 1.398800e-56 | -8.615850e-47 |
| Msa0736440 | Msa1435630 | 0.814578 | 1.434370e-51 | -8.615850e-47 |
| Msa0740090 | Msa1435630 | 0.871609 | 5.997723e-67 | -8.615850e-47 |
| Msa0782750 | Msa1435630 | 0.830648 | 2.608996e-55 | -8.615850e-47 |
| Msa0820380 | Msa1435630 | 0.845338 | 4.323044e-59 | -8.615850e-47 |
| Msa0125200 | Msa1435630 | 0.810486 | 1.125337e-50 | -8.615850e-47 |
| Msa0155180 | Msa1435630 | 0.906560 | 1.302928e-80 | -8.615850e-47 |
| Msa0182400 | Msa1435630 | 0.811963 | 5.383410e-51 | -8.615850e-47 |
| Msa1262860 | Msa1435630 | 0.824904 | 6.267149e-54 | -8.615850e-47 |
| Msa1267050 | Msa1435630 | 0.816133 | 6.470851e-52 | -8.615850e-47 |
| Msa1267180 | Msa1435630 | 0.821609 | 3.687111e-53 | -8.615850e-47 |
| Msa1290380 | Msa1435630 | 0.822151 | 2.760928e-53 | -8.615850e-47 |
| Msa1290440 | Msa1435630 | 0.813819 | 2.109800e-51 | -8.615850e-47 |
| Msa0382530 | Msa1435630 | 0.999600 | 0.000000e+00 | -8.615850e-47 |
| Msa0420680 | Msa1435630 | 0.819301 | 1.248009e-52 | -8.615850e-47 |
| Msa0427820 | Msa1435630 | 0.828127 | 1.068161e-54 | -8.615850e-47 |
| Msa0432320 | Msa1435630 | 0.971775 | 1.068480e-133 | -8.615850e-47 |
| Msa0451170 | Msa1435630 | 0.867258 | 1.562429e-65 | -8.615850e-47 |
| Msa0460550 | Msa1435630 | 0.813471 | 2.516968e-51 | -8.615850e-47 |
| Msa0460630 | Msa1435630 | 0.805588 | 1.241678e-49 | -8.615850e-47 |
| Msa0474060 | Msa1435630 | 0.827853 | 1.243450e-54 | -8.615850e-47 |
| Msa1014320 | Msa1435630 | 0.870549 | 1.341366e-66 | -8.615850e-47 |
| Msa1021780 | Msa1435630 | 0.826893 | 2.112617e-54 | -8.615850e-47 |
| Msa1055310 | Msa1435630 | 0.878206 | 3.387028e-69 | -8.615850e-47 |
| Msa0359010 | Msa1435630 | 0.864913 | 8.632304e-65 | -8.615850e-47 |
| Msa1188170 | Msa1435630 | 0.839691 | 1.361789e-57 | -8.615850e-47 |
| Msa1211910 | Msa1435630 | 0.839110 | 1.927021e-57 | -8.615850e-47 |
| Msa0498610 | Msa1435630 | 0.870504 | 1.388549e-66 | -8.615850e-47 |
| Msa0512520 | Msa1435630 | 0.818334 | 2.069044e-52 | -8.615850e-47 |
| Msa0518680 | Msa1435630 | 0.816995 | 4.147067e-52 | -8.615850e-47 |
| Msa0525210 | Msa1435630 | 0.998338 | 2.958705e-262 | -8.615850e-47 |
| Msa0530390 | Msa1435630 | 0.808515 | 2.982162e-50 | -8.615850e-47 |
| Msa0562560 | Msa1435630 | 0.811134 | 8.149579e-51 | -8.615850e-47 |
| Msa0579780 | Msa1435630 | 0.818411 | 1.988424e-52 | -8.615850e-47 |
| Msa0849650 | Msa1435630 | 0.819487 | 1.132138e-52 | -8.615850e-47 |
| Msa0862170 | Msa1435630 | 0.806093 | 9.723636e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435630 | MtrunA17_Chr3g0137791 | 93.947 | 826 | 23 | 1 | 1 | 799 | 1 | 826 | 0.0 | 1614 |
| Msa1435630 | MtrunA17_Chr3g0137821 | 69.795 | 831 | 210 | 11 | 1 | 799 | 1 | 822 | 0.0 | 1178 |
| Msa1435630 | MtrunA17_Chr4g0003411 | 65.062 | 810 | 261 | 9 | 5 | 799 | 6 | 808 | 0.0 | 1081 |
| Msa1435630 | MtrunA17_Chr2g0333021 | 65.809 | 816 | 248 | 11 | 4 | 799 | 5 | 809 | 0.0 | 1075 |
| Msa1435630 | MtrunA17_Chr7g0246481 | 46.238 | 824 | 387 | 17 | 4 | 788 | 298 | 1104 | 0.0 | 712 |
| Msa1435630 | MtrunA17_Chr8g0350951 | 45.828 | 827 | 391 | 19 | 4 | 788 | 228 | 1039 | 0.0 | 707 |
| Msa1435630 | MtrunA17_Chr8g0380631 | 43.533 | 866 | 389 | 20 | 4 | 799 | 14 | 849 | 0.0 | 679 |
| Msa1435630 | MtrunA17_Chr3g0143471 | 43.218 | 870 | 403 | 20 | 5 | 799 | 13 | 866 | 0.0 | 675 |
| Msa1435630 | MtrunA17_Chr5g0398161 | 43.841 | 828 | 402 | 19 | 4 | 788 | 37 | 844 | 0.0 | 673 |
| Msa1435630 | MtrunA17_Chr5g0398171 | 43.590 | 819 | 411 | 18 | 4 | 788 | 37 | 838 | 0.0 | 665 |
| Msa1435630 | MtrunA17_Chr5g0406161 | 42.260 | 814 | 404 | 15 | 32 | 799 | 79 | 872 | 0.0 | 662 |
| Msa1435630 | MtrunA17_Chr2g0330431 | 43.284 | 804 | 403 | 18 | 1 | 799 | 1 | 756 | 0.0 | 627 |
| Msa1435630 | MtrunA17_Chr8g0341931 | 41.948 | 801 | 406 | 21 | 4 | 799 | 7 | 753 | 0.0 | 584 |
| Msa1435630 | MtrunA17_Chr1g0192401 | 31.727 | 249 | 133 | 11 | 484 | 722 | 733 | 954 | 1.32e-21 | 100 |
| Msa1435630 | MtrunA17_Chr1g0192401 | 31.064 | 235 | 119 | 9 | 190 | 411 | 355 | 559 | 5.33e-18 | 89.4 |
| Msa1435630 | MtrunA17_Chr2g0295411 | 32.836 | 201 | 103 | 6 | 484 | 679 | 783 | 956 | 1.82e-19 | 94.0 |
| Msa1435630 | MtrunA17_Chr2g0295411 | 28.627 | 255 | 127 | 10 | 190 | 422 | 381 | 602 | 1.03e-15 | 82.0 |
| Msa1435630 | MtrunA17_Chr5g0406151 | 50.000 | 68 | 30 | 1 | 308 | 375 | 16 | 79 | 2.07e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435630 | AT3G15730.1 | 63.647 | 817 | 267 | 9 | 3 | 799 | 4 | 810 | 0.0 | 1073 |
| Msa1435630 | AT1G52570.1 | 62.822 | 815 | 275 | 11 | 4 | 799 | 5 | 810 | 0.0 | 1046 |
| Msa1435630 | AT1G52570.3 | 62.822 | 815 | 275 | 11 | 4 | 799 | 5 | 810 | 0.0 | 1046 |
| Msa1435630 | AT1G52570.2 | 62.822 | 815 | 275 | 11 | 4 | 799 | 5 | 810 | 0.0 | 1046 |
| Msa1435630 | AT5G25370.1 | 60.949 | 822 | 288 | 10 | 4 | 799 | 6 | 820 | 0.0 | 1000 |
| Msa1435630 | AT5G25370.3 | 60.949 | 822 | 288 | 10 | 4 | 799 | 6 | 820 | 0.0 | 1000 |
| Msa1435630 | AT5G25370.2 | 60.949 | 822 | 288 | 10 | 4 | 799 | 6 | 820 | 0.0 | 1000 |
| Msa1435630 | AT5G25370.4 | 63.588 | 747 | 260 | 9 | 58 | 799 | 6 | 745 | 0.0 | 960 |
| Msa1435630 | AT4G11830.2 | 44.604 | 834 | 399 | 20 | 1 | 788 | 30 | 846 | 0.0 | 704 |
| Msa1435630 | AT4G11830.1 | 46.332 | 777 | 373 | 18 | 39 | 788 | 55 | 814 | 0.0 | 699 |
| Msa1435630 | AT2G42010.1 | 44.689 | 819 | 404 | 16 | 4 | 788 | 270 | 1073 | 0.0 | 696 |
| Msa1435630 | AT4G11840.1 | 44.072 | 835 | 400 | 18 | 2 | 788 | 41 | 856 | 0.0 | 694 |
| Msa1435630 | AT2G42010.2 | 43.957 | 844 | 399 | 18 | 4 | 788 | 270 | 1098 | 0.0 | 687 |
| Msa1435630 | AT4G11850.1 | 44.444 | 828 | 403 | 17 | 2 | 788 | 37 | 848 | 0.0 | 685 |
| Msa1435630 | AT4G00240.1 | 44.175 | 824 | 401 | 16 | 4 | 788 | 114 | 917 | 0.0 | 684 |
| Msa1435630 | AT4G11840.2 | 43.682 | 831 | 379 | 17 | 2 | 788 | 41 | 826 | 0.0 | 681 |
| Msa1435630 | AT4G00240.3 | 45.385 | 780 | 391 | 14 | 29 | 788 | 1 | 765 | 0.0 | 679 |
| Msa1435630 | AT4G00240.2 | 45.714 | 770 | 383 | 14 | 39 | 788 | 128 | 882 | 0.0 | 679 |
| Msa1435630 | AT4G35790.2 | 43.618 | 807 | 396 | 13 | 31 | 799 | 72 | 857 | 0.0 | 671 |
| Msa1435630 | AT4G35790.1 | 43.276 | 818 | 394 | 14 | 31 | 799 | 72 | 868 | 0.0 | 664 |
| Msa1435630 | AT1G55180.1 | 41.563 | 806 | 407 | 21 | 5 | 799 | 10 | 762 | 0.0 | 608 |
| Msa1435630 | AT1G55180.2 | 42.038 | 785 | 391 | 20 | 29 | 799 | 6 | 740 | 0.0 | 606 |
| Msa1435630 | AT4G35790.3 | 42.326 | 619 | 310 | 8 | 31 | 613 | 72 | 679 | 1.77e-168 | 503 |
| Msa1435630 | AT4G11830.4 | 44.026 | 611 | 294 | 13 | 1 | 576 | 30 | 627 | 1.10e-167 | 499 |
| Msa1435630 | AT4G11830.3 | 43.760 | 601 | 290 | 13 | 1 | 566 | 30 | 617 | 1.89e-163 | 488 |
| Msa1435630 | AT3G05630.1 | 28.099 | 726 | 352 | 31 | 116 | 744 | 304 | 956 | 6.13e-44 | 172 |
| Msa1435630 | AT3G16785.3 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.00e-21 | 101 |
| Msa1435630 | AT3G16785.3 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.90e-18 | 90.1 |
| Msa1435630 | AT3G16785.2 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.00e-21 | 101 |
| Msa1435630 | AT3G16785.2 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.90e-18 | 90.1 |
| Msa1435630 | AT3G16785.6 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.02e-21 | 101 |
| Msa1435630 | AT3G16785.6 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.23e-18 | 90.5 |
| Msa1435630 | AT3G16785.5 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.02e-21 | 101 |
| Msa1435630 | AT3G16785.5 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.23e-18 | 90.5 |
| Msa1435630 | AT3G16785.1 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.02e-21 | 101 |
| Msa1435630 | AT3G16785.1 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.63e-18 | 90.1 |
| Msa1435630 | AT3G16785.4 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.04e-21 | 101 |
| Msa1435630 | AT3G16785.4 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 2.86e-18 | 90.5 |
Find 168 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATCACCTGGGAAATT+TGG | 0.100944 | tig0027765:+13289 | None:intergenic |
| TTAATGCAATTCAAACTTTC+TGG | 0.122895 | tig0027765:+11818 | None:intergenic |
| TCCCTTACCTATCATCATTT+TGG | 0.178826 | tig0027765:+12274 | None:intergenic |
| TTGTATTTGAACATGGATTT+TGG | 0.185371 | tig0027765:+14032 | None:intergenic |
| GCTTGAACTGAAGCACTTTC+AGG | 0.203277 | tig0027765:+12524 | None:intergenic |
| GAAAGGTTTCATTCCATTTC+GGG | 0.221154 | tig0027765:+14232 | None:intergenic |
| CCCATTGGAGCGACTCTAAT+TGG | 0.224022 | tig0027765:-14153 | Msa1435630:CDS |
| AGCAGTTATGGTTCCATTAT+TGG | 0.224317 | tig0027765:+11691 | None:intergenic |
| AATCCATATATTTGTCCTTT+TGG | 0.234668 | tig0027765:+11902 | None:intergenic |
| ATCGATGCTGGTGCTGCTTC+TGG | 0.242139 | tig0027765:-12851 | Msa1435630:CDS |
| GTCTATTACTGGTGGCTATA+TGG | 0.261291 | tig0027765:+11927 | None:intergenic |
| CATCTTGGTAAAGAGTAATT+TGG | 0.273836 | tig0027765:+13911 | None:intergenic |
| AAAACATTTCACAGATTATT+GGG | 0.279095 | tig0027765:-14320 | Msa1435630:intron |
| TGAAAGGTTTCATTCCATTT+CGG | 0.287963 | tig0027765:+14231 | None:intergenic |
| TTAATGTTCTTATGCTTGTT+TGG | 0.298166 | tig0027765:-13657 | Msa1435630:CDS |
| CCAACAGAAGCCGCTGAAAA+AGG | 0.298342 | tig0027765:-12815 | Msa1435630:CDS |
| CCATTATTGGTTACTTGTAT+TGG | 0.306443 | tig0027765:+11704 | None:intergenic |
| CCAATACAAGTAACCAATAA+TGG | 0.313741 | tig0027765:-11704 | Msa1435630:CDS |
| GATACTAAGGCTAAGATTCT+AGG | 0.315033 | tig0027765:-11644 | Msa1435630:CDS |
| TGTCAACAATTATAGTCTTC+TGG | 0.324805 | tig0027765:+13458 | None:intergenic |
| AAGAACATTAACACCTTCAT+TGG | 0.328996 | tig0027765:+13669 | None:intergenic |
| ACATTCTTTAAACAAAATAA+TGG | 0.329312 | tig0027765:-13937 | Msa1435630:CDS |
| GTTGTTCTTGTTGACTTGTT+TGG | 0.332002 | tig0027765:+13724 | None:intergenic |
| TGGAGGAAGGTACTCAGATT+TGG | 0.345102 | tig0027765:+11619 | None:intergenic |
| GGAACCATAACTGCTCTTCC+AGG | 0.349450 | tig0027765:-11683 | Msa1435630:CDS |
| CCACCAAAAGGACAAATATA+TGG | 0.350161 | tig0027765:-11905 | Msa1435630:CDS |
| CCCTTTATGACTTGTTCAAC+TGG | 0.351702 | tig0027765:+14117 | None:intergenic |
| GTTGGAAGAACTAGAATGAT+AGG | 0.353330 | tig0027765:-14258 | Msa1435630:CDS |
| TAATGTTCTTATGCTTGTTT+GGG | 0.358547 | tig0027765:-13656 | Msa1435630:CDS |
| ACTCCATCCAATGGAATATA+CGG | 0.365105 | tig0027765:+13865 | None:intergenic |
| GATATTAAAGTTGAGGATAT+TGG | 0.365230 | tig0027765:-12656 | Msa1435630:CDS |
| TCCAGTTGAACAAGTCATAA+AGG | 0.366172 | tig0027765:-14118 | Msa1435630:CDS |
| ATATAATCACTGTCAGGTTC+TGG | 0.366661 | tig0027765:+12338 | None:intergenic |
| CTTTAAGAAAGATGGCTTGA+TGG | 0.371228 | tig0027765:-13611 | Msa1435630:CDS |
| CAGTTCAAGCAATATTAGAT+TGG | 0.371630 | tig0027765:-12511 | Msa1435630:CDS |
| TTTAGTCCTTGTGACCAGTT+TGG | 0.378654 | tig0027765:+13988 | None:intergenic |
| GTTCCTGACTTTAAGAAAGA+TGG | 0.382115 | tig0027765:-13619 | Msa1435630:CDS |
| CATGGCTAGGTGGTGAGAAT+TGG | 0.390572 | tig0027765:+11599 | None:intergenic |
| TAAAATGACAAGTAATCTCT+TGG | 0.395875 | tig0027765:+12416 | None:intergenic |
| AGAGTACAATTACATGGAAA+TGG | 0.400127 | tig0027765:+14993 | None:intergenic |
| TTACTGGTGGCTATATGGTT+TGG | 0.403321 | tig0027765:+11932 | None:intergenic |
| CAAGATGCACATGTTCTAGA+TGG | 0.408428 | tig0027765:-13895 | Msa1435630:CDS |
| GATGATGAATACATAATCAT+TGG | 0.412861 | tig0027765:-12025 | Msa1435630:CDS |
| TATGAGCACCTTGGAGATAT+TGG | 0.417376 | tig0027765:-11863 | Msa1435630:CDS |
| GTTCATGCCAAAATGATGAT+AGG | 0.420607 | tig0027765:-12281 | Msa1435630:intron |
| AGAATCTTAGCCTTAGTATC+AGG | 0.421693 | tig0027765:+11647 | None:intergenic |
| TTACATGGAAATGGAGGTTA+AGG | 0.423456 | tig0027765:+15002 | None:intergenic |
| CAAGAACAACCATCACTCTT+GGG | 0.423882 | tig0027765:-13711 | Msa1435630:CDS |
| CGGCTTCTGTTGGATCTTGA+GGG | 0.427130 | tig0027765:+12825 | None:intergenic |
| AAATCCTGGAAGAGCAGTTA+TGG | 0.432056 | tig0027765:+11679 | None:intergenic |
| GCACTTTCAGGTATACCTTC+TGG | 0.435666 | tig0027765:+12536 | None:intergenic |
| ATCTTCAGTGACAACTCCTT+TGG | 0.436891 | tig0027765:+12617 | None:intergenic |
| GCGGCTTCTGTTGGATCTTG+AGG | 0.438003 | tig0027765:+12824 | None:intergenic |
| AAGCCATCTTTCTTAAAGTC+AGG | 0.443766 | tig0027765:+13616 | None:intergenic |
| AGATTGGCAAAGAAGGACTA+TGG | 0.445851 | tig0027765:-12495 | Msa1435630:CDS |
| CAATATTAGATTGGCAAAGA+AGG | 0.446472 | tig0027765:-12502 | Msa1435630:CDS |
| GAATGATAGGTAGCCCGAAA+TGG | 0.447072 | tig0027765:-14245 | Msa1435630:CDS |
| CCAATTAGAGTCGCTCCAAT+GGG | 0.447711 | tig0027765:+14153 | None:intergenic |
| GATATTCATTGTAAACTAGA+AGG | 0.448111 | tig0027765:-13046 | Msa1435630:CDS |
| GTTCCGTATATTCCATTGGA+TGG | 0.448817 | tig0027765:-13868 | Msa1435630:CDS |
| TTCTAGGTAGTTCATATGGT+TGG | 0.454363 | tig0027765:-12688 | Msa1435630:CDS |
| GATACACTACAAACTCTTGC+CGG | 0.455373 | tig0027765:-14810 | Msa1435630:CDS |
| CTTGTTTGGATCTCTAATCA+AGG | 0.457534 | tig0027765:+13738 | None:intergenic |
| GTGACAACTCCTTTGGTATG+AGG | 0.458272 | tig0027765:+12624 | None:intergenic |
| CTTTGAGTATATGTCCCAAT+TGG | 0.459345 | tig0027765:+11772 | None:intergenic |
| ACAAGAACAACCATCACTCT+TGG | 0.459719 | tig0027765:-13712 | Msa1435630:CDS |
| CCAGTTGAACAAGTCATAAA+GGG | 0.460625 | tig0027765:-14117 | Msa1435630:CDS |
| CACAACACATCCCATGCAAC+AGG | 0.462297 | tig0027765:+13022 | None:intergenic |
| CGAAACATGCTTGAAGGTAG+TGG | 0.463688 | tig0027765:+12953 | None:intergenic |
| AGAGACAGTGAGATTGCAAT+AGG | 0.465168 | tig0027765:-11965 | Msa1435630:CDS |
| TGAGGAACTCCTTGAAATCC+TGG | 0.466088 | tig0027765:+13961 | None:intergenic |
| ATATCATGCCATGGCTCTCT+AGG | 0.466709 | tig0027765:+13064 | None:intergenic |
| TTCTGTTCCGTATATTCCAT+TGG | 0.467036 | tig0027765:-13872 | Msa1435630:CDS |
| ATTGTTAGCAAGATTGAAGC+TGG | 0.474341 | tig0027765:-12596 | Msa1435630:CDS |
| CTAAAGAGTCCAGGATTTCA+AGG | 0.476603 | tig0027765:-13970 | Msa1435630:CDS |
| CATTGATCTTTGATTTATGT+TGG | 0.476676 | tig0027765:+11997 | None:intergenic |
| TCAGGAAAACATTCAAATCC+TGG | 0.477356 | tig0027765:+11665 | None:intergenic |
| GTTGAAGCCCTTCAAAGAAA+AGG | 0.478206 | tig0027765:-12452 | Msa1435630:CDS |
| CAGTTTCTCTCCACATGGCT+AGG | 0.479672 | tig0027765:+11586 | None:intergenic |
| TCAGGTTCTGGTGCCTCTGT+AGG | 0.480853 | tig0027765:+12350 | None:intergenic |
| AACTGGTTGGTCTGTTTACA+CGG | 0.480935 | tig0027765:-13767 | Msa1435630:CDS |
| CATCTAGAACATGTGCATCT+TGG | 0.481308 | tig0027765:+13896 | None:intergenic |
| ATGGATTTAGACGTGCACTA+TGG | 0.481715 | tig0027765:-11886 | Msa1435630:CDS |
| CATTTCACAGATTATTGGGA+TGG | 0.486910 | tig0027765:-14316 | Msa1435630:intron |
| TCCAATTAGAGTCGCTCCAA+TGG | 0.488605 | tig0027765:+14152 | None:intergenic |
| GATTTAGACAAAGCAAGAGT+TGG | 0.492961 | tig0027765:-14276 | Msa1435630:CDS |
| GGCTAGGTGGTGAGAATTGG+AGG | 0.496635 | tig0027765:+11602 | None:intergenic |
| AAAATGACAAGTAATCTCTT+GGG | 0.497438 | tig0027765:+12417 | None:intergenic |
| TATTCACGAAACATGCTTGA+AGG | 0.498456 | tig0027765:+12947 | None:intergenic |
| GTATGTGCCGGGAAAATGTT+GGG | 0.500103 | tig0027765:-13836 | Msa1435630:CDS |
| TTGTTTAGATCGATCGATGC+TGG | 0.502376 | tig0027765:-12863 | Msa1435630:CDS |
| GATGGAAGAAGTATAGTTCA+AGG | 0.503461 | tig0027765:-13511 | Msa1435630:CDS |
| GTGGGATTGATCTTTGTGAT+GGG | 0.506802 | tig0027765:-13381 | Msa1435630:CDS |
| CATGGAAATGGAGGTTAAGG+AGG | 0.508674 | tig0027765:+15005 | None:intergenic |
| AGGGCAACATAGTGAATACA+TGG | 0.511698 | tig0027765:-14098 | Msa1435630:CDS |
| GCTCTAATATAATCACTGTC+AGG | 0.514466 | tig0027765:+12332 | None:intergenic |
| GCTTGATGTGACTATATATG+AGG | 0.515858 | tig0027765:-14835 | Msa1435630:CDS |
| TTTGACAGTGAATATAATGT+TGG | 0.517344 | tig0027765:+14185 | None:intergenic |
| TGGAGTAGAACGGTATGTGC+CGG | 0.519752 | tig0027765:-13848 | Msa1435630:CDS |
| CAACATAAATCAAAGATCAA+TGG | 0.522850 | tig0027765:-11996 | Msa1435630:CDS |
| AACTAGAAGGACCTGTTGCA+TGG | 0.522952 | tig0027765:-13033 | Msa1435630:CDS |
| GGAGTAGAACGGTATGTGCC+GGG | 0.525843 | tig0027765:-13847 | Msa1435630:CDS |
| GGTGGGATTGATCTTTGTGA+TGG | 0.527896 | tig0027765:-13382 | Msa1435630:CDS |
| TTTCATCAACCAAATTTCCC+AGG | 0.530381 | tig0027765:-13298 | Msa1435630:intron |
| GGTATACCTTCTGGCCACAT+TGG | 0.533593 | tig0027765:+12545 | None:intergenic |
| CGGCAAATCAAAACAACACA+TGG | 0.534970 | tig0027765:-12895 | Msa1435630:CDS |
| CTTAAGAAGAAAGCCAATGA+AGG | 0.539673 | tig0027765:-13682 | Msa1435630:CDS |
| TCTTACCCTCTCGGTTTCCA+AGG | 0.540213 | tig0027765:+12390 | None:intergenic |
| CAAAGATGGGAAAAGCAAGT+TGG | 0.540379 | tig0027765:-12989 | Msa1435630:CDS |
| ACTATACTTCTTCCATCACC+AGG | 0.545798 | tig0027765:+13517 | None:intergenic |
| GCAGAGATCGAAATTGCATC+CGG | 0.546902 | tig0027765:+14791 | None:intergenic |
| CTTCCATCACCAGGGTTACG+TGG | 0.548889 | tig0027765:+13526 | None:intergenic |
| TTGATAGAATTAATCAGCAA+TGG | 0.551114 | tig0027765:+11539 | None:intergenic |
| ATTTCACAGATTATTGGGAT+GGG | 0.555183 | tig0027765:-14315 | Msa1435630:intron |
| ACTAGAAGGACCTGTTGCAT+GGG | 0.560087 | tig0027765:-13032 | Msa1435630:CDS |
| GTCATGTTGCACTTACTACA+CGG | 0.562058 | tig0027765:-14861 | Msa1435630:CDS |
| GTGGATCATCGTCCAATACA+AGG | 0.562412 | tig0027765:-14060 | Msa1435630:CDS |
| TTCATATGGTTGGAAATCAT+CGG | 0.572489 | tig0027765:-12678 | Msa1435630:CDS |
| ACCAGTAATAGACCACCAAA+AGG | 0.573701 | tig0027765:-11917 | Msa1435630:CDS |
| ATGGGTTAATATATTAGATG+TGG | 0.574499 | tig0027765:-14079 | Msa1435630:CDS |
| GTCATTCCAATGTGGCCAGA+AGG | 0.574690 | tig0027765:-12551 | Msa1435630:CDS |
| TACCGTTCTACTCCATCCAA+TGG | 0.576822 | tig0027765:+13856 | None:intergenic |
| ATGGAAATGGAGGTTAAGGA+GGG | 0.580560 | tig0027765:+15006 | None:intergenic |
| TGCTTTGCACCTCATACCAA+AGG | 0.582854 | tig0027765:-12633 | Msa1435630:CDS |
| TGACAAGTAATCTCTTGGGT+TGG | 0.586202 | tig0027765:+12421 | None:intergenic |
| GTCAAACAAGATAACCCCAT+TGG | 0.587028 | tig0027765:-14168 | Msa1435630:CDS |
| ATCATCGGATATTAAAGTTG+AGG | 0.587336 | tig0027765:-12663 | Msa1435630:CDS |
| AAGAAGCTCCCCAAGAGTGA+TGG | 0.594868 | tig0027765:+13702 | None:intergenic |
| TCACAAGGACTAAAGAGTCC+AGG | 0.595640 | tig0027765:-13979 | Msa1435630:CDS |
| TCGTCGAATAGCGTTTATGT+AGG | 0.595975 | tig0027765:+12745 | None:intergenic |
| CAATTTCGATCTCTGCAACA+AGG | 0.597917 | tig0027765:-14784 | Msa1435630:intron |
| TGAAAACAAAGGATGTTCCA+TGG | 0.602384 | tig0027765:+13348 | None:intergenic |
| TATTGCCTTGGAAACCGAGA+GGG | 0.604275 | tig0027765:-12395 | Msa1435630:CDS |
| TGCCCACGTAACCCTGGTGA+TGG | 0.604924 | tig0027765:-13529 | Msa1435630:CDS |
| GGTATGTGCCGGGAAAATGT+TGG | 0.606197 | tig0027765:-13837 | Msa1435630:CDS |
| TTTCTCTCCACATGGCTAGG+TGG | 0.613613 | tig0027765:+11589 | None:intergenic |
| GTGAGAATTGTATTTGAACA+TGG | 0.616949 | tig0027765:+14025 | None:intergenic |
| TTACAATGAATATCATGCCA+TGG | 0.618761 | tig0027765:+13055 | None:intergenic |
| ACATTCAGTTTCTCTCCACA+TGG | 0.623036 | tig0027765:+11581 | None:intergenic |
| ATGTGCAGAGTAAATGTGAA+AGG | 0.624116 | tig0027765:+14215 | None:intergenic |
| ATAAATCAAAGATCAATGGA+TGG | 0.626562 | tig0027765:-11992 | Msa1435630:CDS |
| TTCCATCACCAGGGTTACGT+GGG | 0.629779 | tig0027765:+13527 | None:intergenic |
| GTACAATTACATGGAAATGG+AGG | 0.633738 | tig0027765:+14996 | None:intergenic |
| AAGAACAACCATCACTCTTG+GGG | 0.634263 | tig0027765:-13710 | Msa1435630:CDS |
| GTATTCAAAGTTGAAAACAA+AGG | 0.635550 | tig0027765:+13337 | None:intergenic |
| GCACTATGGTATGAGCACCT+TGG | 0.638088 | tig0027765:-11872 | Msa1435630:CDS |
| AATGATCCAAACTGGTCACA+AGG | 0.638447 | tig0027765:-13994 | Msa1435630:CDS |
| CAATTGGGACATATACTCAA+AGG | 0.640794 | tig0027765:-11771 | Msa1435630:CDS |
| AGGTGGTGAGAATTGGAGGA+AGG | 0.643329 | tig0027765:+11606 | None:intergenic |
| GAATGAATATACTCCTACAG+AGG | 0.643986 | tig0027765:-12363 | Msa1435630:CDS |
| TCATGTTGCACTTACTACAC+GGG | 0.647685 | tig0027765:-14860 | Msa1435630:CDS |
| TTGTATCACCAATATCTCCA+AGG | 0.650254 | tig0027765:+11855 | None:intergenic |
| CTTGTATTGGATAATGCATG+AGG | 0.661800 | tig0027765:+11717 | None:intergenic |
| TCGTGTATCGAATGTTGCCA+CGG | 0.661868 | tig0027765:-12915 | Msa1435630:CDS |
| AAAGATTCCTGCTTAAAACA+AGG | 0.666302 | tig0027765:+11510 | None:intergenic |
| ATTCTCACCACCTAGCCATG+TGG | 0.671398 | tig0027765:-11596 | Msa1435630:exon |
| TTCCATTGGATGGAGTAGAA+CGG | 0.671871 | tig0027765:-13858 | Msa1435630:CDS |
| GGTGCTTCTATTAACAAAGG+TGG | 0.672280 | tig0027765:-13088 | Msa1435630:CDS |
| ACAGGTGCTTCTATTAACAA+AGG | 0.672622 | tig0027765:-13091 | Msa1435630:intron |
| AAGTTGCTAGTTCTGCACAA+TGG | 0.673752 | tig0027765:-13432 | Msa1435630:CDS |
| TGATGGGAGATATGATACCA+TGG | 0.695563 | tig0027765:-13365 | Msa1435630:CDS |
| CTATACTTCTTCCATCACCA+GGG | 0.698859 | tig0027765:+13518 | None:intergenic |
| AAGGTGGTCCTAGAGAGCCA+TGG | 0.705923 | tig0027765:-13072 | Msa1435630:CDS |
| GGGCAACATAGTGAATACAT+GGG | 0.707757 | tig0027765:-14097 | Msa1435630:CDS |
| CAATTAGAGTCGCTCCAATG+GGG | 0.713373 | tig0027765:+14154 | None:intergenic |
| TTATTGCCTTGGAAACCGAG+AGG | 0.718876 | tig0027765:-12396 | Msa1435630:CDS |
| TGTACATTGTCATTCCAATG+TGG | 0.747438 | tig0027765:-12559 | Msa1435630:CDS |
| GATCATCGTCCAATACAAGG+CGG | 0.779275 | tig0027765:-14057 | Msa1435630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTCTTTAAACAAAATAA+TGG | - | tig0027765:12535-12554 | Msa1435630:CDS | 15.0% |
| !! | AAAATATAAAATATTCCAAC+AGG | - | tig0027765:13363-13382 | Msa1435630:CDS | 15.0% |
| !! | AATAAATGTAAAATAGAAAC+AGG | + | tig0027765:14240-14259 | None:intergenic | 15.0% |
| !!! | TAATAAATTTTCTTTTGCAA+AGG | + | tig0027765:14381-14400 | None:intergenic | 15.0% |
| !! | CAATCTACTTAAAATGAAAT+TGG | + | tig0027765:11751-11770 | None:intergenic | 20.0% |
| !! | TGACAAATTCATTAGAAAAA+AGG | + | tig0027765:11818-11837 | None:intergenic | 20.0% |
| !! | AAAAACATTTCACAGATTAT+TGG | - | tig0027765:12151-12170 | Msa1435630:intron | 20.0% |
| !! | AAAACATTTCACAGATTATT+GGG | - | tig0027765:12152-12171 | Msa1435630:intron | 20.0% |
| !!! | ATTGAAAATCAGTATTTTCT+AGG | - | tig0027765:13768-13787 | Msa1435630:CDS | 20.0% |
| !!! | TTGAACTTCAAATTTTATAG+AGG | + | tig0027765:15010-15029 | None:intergenic | 20.0% |
| !! | TAAGTAAGAGTACAATTACA+TGG | + | tig0027765:11488-11507 | None:intergenic | 25.0% |
| ! | CTTTCAAATTTCGTAAACAA+GGG | - | tig0027765:11921-11940 | Msa1435630:CDS | 25.0% |
| ! | TACAGATTATATAGTCAACA+AGG | + | tig0027765:12052-12071 | None:intergenic | 25.0% |
| ! | TAGGTGTTAGAATGTATAAA+GGG | + | tig0027765:12122-12141 | None:intergenic | 25.0% |
| ! | TTAGGTGTTAGAATGTATAA+AGG | + | tig0027765:12123-12142 | None:intergenic | 25.0% |
| !!! | AAATGTTTTTACATGTCGTT+AGG | + | tig0027765:12141-12160 | None:intergenic | 25.0% |
| ! | TTTGACAGTGAATATAATGT+TGG | + | tig0027765:12290-12309 | None:intergenic | 25.0% |
| !! | ATGGGTTAATATATTAGATG+TGG | - | tig0027765:12393-12412 | Msa1435630:CDS | 25.0% |
| !! | TTGTATTTGAACATGGATTT+TGG | + | tig0027765:12443-12462 | None:intergenic | 25.0% |
| ! | ATGTTAAAAATGATCCAAAC+TGG | - | tig0027765:12470-12489 | Msa1435630:CDS | 25.0% |
| !!! | TTTTGTTTAAAGAATGTGTG+AGG | + | tig0027765:12532-12551 | None:intergenic | 25.0% |
| !!! | AAGCATTTTATTTGCATAAC+TGG | - | tig0027765:12688-12707 | Msa1435630:CDS | 25.0% |
| !!! | ATTTTATTTGCATAACTGGT+TGG | - | tig0027765:12692-12711 | Msa1435630:CDS | 25.0% |
| ! | TTAATGTTCTTATGCTTGTT+TGG | - | tig0027765:12815-12834 | Msa1435630:CDS | 25.0% |
| ! | TAATGTTCTTATGCTTGTTT+GGG | - | tig0027765:12816-12835 | Msa1435630:CDS | 25.0% |
| ! | GTATTCAAAGTTGAAAACAA+AGG | + | tig0027765:13138-13157 | None:intergenic | 25.0% |
| ! | AGGACTTAATTATGAAATGT+TGG | - | tig0027765:13320-13339 | Msa1435630:CDS | 25.0% |
| ! | GATATTCATTGTAAACTAGA+AGG | - | tig0027765:13426-13445 | Msa1435630:CDS | 25.0% |
| !! | TATTTTCTAGGTAGTTCATA+TGG | - | tig0027765:13780-13799 | Msa1435630:CDS | 25.0% |
| ! | GATATTAAAGTTGAGGATAT+TGG | - | tig0027765:13816-13835 | Msa1435630:CDS | 25.0% |
| ! | AAAATGACAAGTAATCTCTT+GGG | + | tig0027765:14058-14077 | None:intergenic | 25.0% |
| ! | TAAAATGACAAGTAATCTCT+TGG | + | tig0027765:14059-14078 | None:intergenic | 25.0% |
| ! | GAAACAGGTAATATATATGT+TGG | + | tig0027765:14225-14244 | None:intergenic | 25.0% |
| !!! | ATTGGAAAGTGTCAATTTAA+TGG | + | tig0027765:14343-14362 | None:intergenic | 25.0% |
| ! | GATGATGAATACATAATCAT+TGG | - | tig0027765:14447-14466 | Msa1435630:intron | 25.0% |
| !! | CATTGATCTTTGATTTATGT+TGG | + | tig0027765:14478-14497 | None:intergenic | 25.0% |
| ! | CAACATAAATCAAAGATCAA+TGG | - | tig0027765:14476-14495 | Msa1435630:intron | 25.0% |
| ! | ATAAATCAAAGATCAATGGA+TGG | - | tig0027765:14480-14499 | Msa1435630:intron | 25.0% |
| !! | AATCCATATATTTGTCCTTT+TGG | + | tig0027765:14573-14592 | None:intergenic | 25.0% |
| ! | TTAATGCAATTCAAACTTTC+TGG | + | tig0027765:14657-14676 | None:intergenic | 25.0% |
| ! | TTGATAGAATTAATCAGCAA+TGG | + | tig0027765:14936-14955 | None:intergenic | 25.0% |
| !! | ACTTCAAATTTTATAGAGGT+AGG | + | tig0027765:15006-15025 | None:intergenic | 25.0% |
| AGAGTACAATTACATGGAAA+TGG | + | tig0027765:11482-11501 | None:intergenic | 30.0% | |
| GCTTTCAAATTTCGTAAACA+AGG | - | tig0027765:11920-11939 | Msa1435630:CDS | 30.0% | |
| AATATGTGAAGATATACCTC+TGG | + | tig0027765:12020-12039 | None:intergenic | 30.0% | |
| ATTTCACAGATTATTGGGAT+GGG | - | tig0027765:12157-12176 | Msa1435630:intron | 30.0% | |
| TGAAAGGTTTCATTCCATTT+CGG | + | tig0027765:12244-12263 | None:intergenic | 30.0% | |
| GTGAGAATTGTATTTGAACA+TGG | + | tig0027765:12450-12469 | None:intergenic | 30.0% | |
| CATCTTGGTAAAGAGTAATT+TGG | + | tig0027765:12564-12583 | None:intergenic | 30.0% | |
| AAGAACATTAACACCTTCAT+TGG | + | tig0027765:12806-12825 | None:intergenic | 30.0% | |
| TGTCAACAATTATAGTCTTC+TGG | + | tig0027765:13017-13036 | None:intergenic | 30.0% | |
| !! | AGAACAATCACAAGTTTTGT+TGG | - | tig0027765:13069-13088 | Msa1435630:CDS | 30.0% |
| GCATGCATATTTACAATCTT+AGG | - | tig0027765:13300-13319 | Msa1435630:CDS | 30.0% | |
| TTACAATGAATATCATGCCA+TGG | + | tig0027765:13420-13439 | None:intergenic | 30.0% | |
| TTCATATGGTTGGAAATCAT+CGG | - | tig0027765:13794-13813 | Msa1435630:CDS | 30.0% | |
| ATCATCGGATATTAAAGTTG+AGG | - | tig0027765:13809-13828 | Msa1435630:CDS | 30.0% | |
| CAGTTCAAGCAATATTAGAT+TGG | - | tig0027765:13961-13980 | Msa1435630:CDS | 30.0% | |
| CAATATTAGATTGGCAAAGA+AGG | - | tig0027765:13970-13989 | Msa1435630:CDS | 30.0% | |
| ! | TCTGATTCCTTTTCTTTGAA+GGG | + | tig0027765:14030-14049 | None:intergenic | 30.0% |
| !!! | TACTTGTCATTTTATTGCCT+TGG | - | tig0027765:14065-14084 | Msa1435630:CDS | 30.0% |
| AGGTGTATGTGCTAATTAAT+TGG | + | tig0027765:14361-14380 | None:intergenic | 30.0% | |
| ! | CCATTATTGGTTACTTGTAT+TGG | + | tig0027765:14771-14790 | None:intergenic | 30.0% |
| CCAATACAAGTAACCAATAA+TGG | - | tig0027765:14768-14787 | Msa1435630:intron | 30.0% | |
| ! | TGAATGTTTTCCTGATACTA+AGG | - | tig0027765:14815-14834 | Msa1435630:CDS | 30.0% |
| AAAGATTCCTGCTTAAAACA+AGG | + | tig0027765:14965-14984 | None:intergenic | 30.0% | |
| TTACATGGAAATGGAGGTTA+AGG | + | tig0027765:11473-11492 | None:intergenic | 35.0% | |
| GTACAATTACATGGAAATGG+AGG | + | tig0027765:11479-11498 | None:intergenic | 35.0% | |
| !! | TGTTTTTATTGCACACAGCA+AGG | - | tig0027765:11561-11580 | Msa1435630:three_prime_UTR | 35.0% |
| ! | GTTTTTATTGCACACAGCAA+GGG | - | tig0027765:11562-11581 | Msa1435630:three_prime_UTR | 35.0% |
| GCTTGATGTGACTATATATG+AGG | - | tig0027765:11637-11656 | Msa1435630:CDS | 35.0% | |
| !! | CTCTGTGTATTTGCTGATTT+CGG | - | tig0027765:11898-11917 | Msa1435630:CDS | 35.0% |
| CATTTCACAGATTATTGGGA+TGG | - | tig0027765:12156-12175 | Msa1435630:intron | 35.0% | |
| GATTTAGACAAAGCAAGAGT+TGG | - | tig0027765:12196-12215 | Msa1435630:intron | 35.0% | |
| GTTGGAAGAACTAGAATGAT+AGG | - | tig0027765:12214-12233 | Msa1435630:intron | 35.0% | |
| GAAAGGTTTCATTCCATTTC+GGG | + | tig0027765:12243-12262 | None:intergenic | 35.0% | |
| ATGTGCAGAGTAAATGTGAA+AGG | + | tig0027765:12260-12279 | None:intergenic | 35.0% | |
| TCCAGTTGAACAAGTCATAA+AGG | - | tig0027765:12354-12373 | Msa1435630:CDS | 35.0% | |
| CCAGTTGAACAAGTCATAAA+GGG | - | tig0027765:12355-12374 | Msa1435630:CDS | 35.0% | |
| TTCTGTTCCGTATATTCCAT+TGG | - | tig0027765:12600-12619 | Msa1435630:CDS | 35.0% | |
| ACTCCATCCAATGGAATATA+CGG | + | tig0027765:12610-12629 | None:intergenic | 35.0% | |
| CTTGTTTGGATCTCTAATCA+AGG | + | tig0027765:12737-12756 | None:intergenic | 35.0% | |
| !! | GTTGTTCTTGTTGACTTGTT+TGG | + | tig0027765:12751-12770 | None:intergenic | 35.0% |
| CTTAAGAAGAAAGCCAATGA+AGG | - | tig0027765:12790-12809 | Msa1435630:CDS | 35.0% | |
| ! | GTTCCTGACTTTAAGAAAGA+TGG | - | tig0027765:12853-12872 | Msa1435630:CDS | 35.0% |
| AAGCCATCTTTCTTAAAGTC+AGG | + | tig0027765:12859-12878 | None:intergenic | 35.0% | |
| ! | CTTTAAGAAAGATGGCTTGA+TGG | - | tig0027765:12861-12880 | Msa1435630:CDS | 35.0% |
| ! | GATGGAAGAAGTATAGTTCA+AGG | - | tig0027765:12961-12980 | Msa1435630:CDS | 35.0% |
| !!! | ACAATCACAAGTTTTGTTGG+TGG | - | tig0027765:13072-13091 | Msa1435630:CDS | 35.0% |
| !!! | CAATCACAAGTTTTGTTGGT+GGG | - | tig0027765:13073-13092 | Msa1435630:CDS | 35.0% |
| TGAAAACAAAGGATGTTCCA+TGG | + | tig0027765:13127-13146 | None:intergenic | 35.0% | |
| TTTCATCAACCAAATTTCCC+AGG | - | tig0027765:13174-13193 | Msa1435630:intron | 35.0% | |
| AACTAGTTCCAAAATCACCT+GGG | + | tig0027765:13194-13213 | None:intergenic | 35.0% | |
| AAACTAGTTCCAAAATCACC+TGG | + | tig0027765:13195-13214 | None:intergenic | 35.0% | |
| !! | TTGTTAATAGAAGCACCTGT+TGG | + | tig0027765:13381-13400 | None:intergenic | 35.0% |
| ACAGGTGCTTCTATTAACAA+AGG | - | tig0027765:13381-13400 | Msa1435630:CDS | 35.0% | |
| ! | TGTGCAATTTTGAGCAAAGA+TGG | - | tig0027765:13469-13488 | Msa1435630:CDS | 35.0% |
| ! | GTGCAATTTTGAGCAAAGAT+GGG | - | tig0027765:13470-13489 | Msa1435630:CDS | 35.0% |
| TATTCACGAAACATGCTTGA+AGG | + | tig0027765:13528-13547 | None:intergenic | 35.0% | |
| !!! | AGTAACAAGACCTTTTTCAG+CGG | + | tig0027765:13670-13689 | None:intergenic | 35.0% |
| TTCTAGGTAGTTCATATGGT+TGG | - | tig0027765:13784-13803 | Msa1435630:CDS | 35.0% | |
| ATTGTTAGCAAGATTGAAGC+TGG | - | tig0027765:13876-13895 | Msa1435630:CDS | 35.0% | |
| TGTACATTGTCATTCCAATG+TGG | - | tig0027765:13913-13932 | Msa1435630:CDS | 35.0% | |
| ! | CTCTGATTCCTTTTCTTTGA+AGG | + | tig0027765:14031-14050 | None:intergenic | 35.0% |
| ! | CATTCATTTTCTTACCCTCT+CGG | + | tig0027765:14094-14113 | None:intergenic | 35.0% |
| GAATGAATATACTCCTACAG+AGG | - | tig0027765:14109-14128 | Msa1435630:CDS | 35.0% | |
| ATATAATCACTGTCAGGTTC+TGG | + | tig0027765:14137-14156 | None:intergenic | 35.0% | |
| GCTCTAATATAATCACTGTC+AGG | + | tig0027765:14143-14162 | None:intergenic | 35.0% | |
| GTTCATGCCAAAATGATGAT+AGG | - | tig0027765:14191-14210 | Msa1435630:CDS | 35.0% | |
| TGCCAAAATGATGATAGGTA+AGG | - | tig0027765:14196-14215 | Msa1435630:CDS | 35.0% | |
| GCCAAAATGATGATAGGTAA+GGG | - | tig0027765:14197-14216 | Msa1435630:CDS | 35.0% | |
| ! | TCCCTTACCTATCATCATTT+TGG | + | tig0027765:14201-14220 | None:intergenic | 35.0% |
| AACGCAGTTCAAATATCTTC+GGG | + | tig0027765:14293-14312 | None:intergenic | 35.0% | |
| GAACGCAGTTCAAATATCTT+CGG | + | tig0027765:14294-14313 | None:intergenic | 35.0% | |
| TATTTGAACTGCGTTCTTTG+AGG | - | tig0027765:14298-14317 | Msa1435630:CDS | 35.0% | |
| ! | CCATATATTTGTCCTTTTGG+TGG | + | tig0027765:14570-14589 | None:intergenic | 35.0% |
| CCACCAAAAGGACAAATATA+TGG | - | tig0027765:14567-14586 | Msa1435630:intron | 35.0% | |
| TTGTATCACCAATATCTCCA+AGG | + | tig0027765:14620-14639 | None:intergenic | 35.0% | |
| CTTTGAGTATATGTCCCAAT+TGG | + | tig0027765:14703-14722 | None:intergenic | 35.0% | |
| CAATTGGGACATATACTCAA+AGG | - | tig0027765:14701-14720 | Msa1435630:intron | 35.0% | |
| CTTGTATTGGATAATGCATG+AGG | + | tig0027765:14758-14777 | None:intergenic | 35.0% | |
| AGCAGTTATGGTTCCATTAT+TGG | + | tig0027765:14784-14803 | None:intergenic | 35.0% | |
| TCAGGAAAACATTCAAATCC+TGG | + | tig0027765:14810-14829 | None:intergenic | 35.0% | |
| !! | AGAATCTTAGCCTTAGTATC+AGG | + | tig0027765:14828-14847 | None:intergenic | 35.0% |
| GATACTAAGGCTAAGATTCT+AGG | - | tig0027765:14828-14847 | Msa1435630:CDS | 35.0% | |
| !!! | AGTAACACCTTGTTTTAAGC+AGG | - | tig0027765:14955-14974 | Msa1435630:intron | 35.0% |
| ATGGAAATGGAGGTTAAGGA+GGG | + | tig0027765:11469-11488 | None:intergenic | 40.0% | |
| GTCATGTTGCACTTACTACA+CGG | - | tig0027765:11611-11630 | Msa1435630:CDS | 40.0% | |
| TCATGTTGCACTTACTACAC+GGG | - | tig0027765:11612-11631 | Msa1435630:CDS | 40.0% | |
| GATACACTACAAACTCTTGC+CGG | - | tig0027765:11662-11681 | Msa1435630:CDS | 40.0% | |
| CAATTTCGATCTCTGCAACA+AGG | - | tig0027765:11688-11707 | Msa1435630:CDS | 40.0% | |
| CGAAATCAGCAAATACACAG+AGG | + | tig0027765:11900-11919 | None:intergenic | 40.0% | |
| GTCAAACAAGATAACCCCAT+TGG | - | tig0027765:12304-12323 | Msa1435630:CDS | 40.0% | |
| !! | CCCTTTATGACTTGTTCAAC+TGG | + | tig0027765:12358-12377 | None:intergenic | 40.0% |
| AGGGCAACATAGTGAATACA+TGG | - | tig0027765:12374-12393 | Msa1435630:CDS | 40.0% | |
| GGGCAACATAGTGAATACAT+GGG | - | tig0027765:12375-12394 | Msa1435630:CDS | 40.0% | |
| !!! | ATTTTGGAACCGCCTTGTAT+TGG | + | tig0027765:12427-12446 | None:intergenic | 40.0% |
| AATGATCCAAACTGGTCACA+AGG | - | tig0027765:12478-12497 | Msa1435630:CDS | 40.0% | |
| TTTAGTCCTTGTGACCAGTT+TGG | + | tig0027765:12487-12506 | None:intergenic | 40.0% | |
| CTAAAGAGTCCAGGATTTCA+AGG | - | tig0027765:12502-12521 | Msa1435630:CDS | 40.0% | |
| ! | CATCTAGAACATGTGCATCT+TGG | + | tig0027765:12579-12598 | None:intergenic | 40.0% |
| ! | CAAGATGCACATGTTCTAGA+TGG | - | tig0027765:12577-12596 | Msa1435630:CDS | 40.0% |
| GTTCCGTATATTCCATTGGA+TGG | - | tig0027765:12604-12623 | Msa1435630:CDS | 40.0% | |
| TTCCATTGGATGGAGTAGAA+CGG | - | tig0027765:12614-12633 | Msa1435630:CDS | 40.0% | |
| ! | GTATCTTCCCAACATTTTCC+CGG | + | tig0027765:12646-12665 | None:intergenic | 40.0% |
| !! | AACTGGTTGGTCTGTTTACA+CGG | - | tig0027765:12705-12724 | Msa1435630:CDS | 40.0% |
| ACAAGAACAACCATCACTCT+TGG | - | tig0027765:12760-12779 | Msa1435630:CDS | 40.0% | |
| CAAGAACAACCATCACTCTT+GGG | - | tig0027765:12761-12780 | Msa1435630:CDS | 40.0% | |
| AAGAACAACCATCACTCTTG+GGG | - | tig0027765:12762-12781 | Msa1435630:CDS | 40.0% | |
| CTATACTTCTTCCATCACCA+GGG | + | tig0027765:12957-12976 | None:intergenic | 40.0% | |
| ACTATACTTCTTCCATCACC+AGG | + | tig0027765:12958-12977 | None:intergenic | 40.0% | |
| !! | AAGTTGCTAGTTCTGCACAA+TGG | - | tig0027765:13040-13059 | Msa1435630:CDS | 40.0% |
| GTGGGATTGATCTTTGTGAT+GGG | - | tig0027765:13091-13110 | Msa1435630:intron | 40.0% | |
| TGATGGGAGATATGATACCA+TGG | - | tig0027765:13107-13126 | Msa1435630:intron | 40.0% | |
| CCAAAATCACCTGGGAAATT+TGG | + | tig0027765:13186-13205 | None:intergenic | 40.0% | |
| ! | CCAAATTTCCCAGGTGATTT+TGG | - | tig0027765:13183-13202 | Msa1435630:intron | 40.0% |
| GGTGCTTCTATTAACAAAGG+TGG | - | tig0027765:13384-13403 | Msa1435630:CDS | 40.0% | |
| CAAAGATGGGAAAAGCAAGT+TGG | - | tig0027765:13483-13502 | Msa1435630:CDS | 40.0% | |
| !!! | TGTGTTGTTTTGATTTGCCG+TGG | + | tig0027765:13577-13596 | None:intergenic | 40.0% |
| CGGCAAATCAAAACAACACA+TGG | - | tig0027765:13577-13596 | Msa1435630:CDS | 40.0% | |
| TTGTTTAGATCGATCGATGC+TGG | - | tig0027765:13609-13628 | Msa1435630:CDS | 40.0% | |
| !! | GCTGAAAAAGGTCTTGTTAC+TGG | - | tig0027765:13669-13688 | Msa1435630:CDS | 40.0% |
| TCGTCGAATAGCGTTTATGT+AGG | + | tig0027765:13730-13749 | None:intergenic | 40.0% | |
| ATCTTCAGTGACAACTCCTT+TGG | + | tig0027765:13858-13877 | None:intergenic | 40.0% | |
| AGATTGGCAAAGAAGGACTA+TGG | - | tig0027765:13977-13996 | Msa1435630:CDS | 40.0% | |
| GTTGAAGCCCTTCAAAGAAA+AGG | - | tig0027765:14020-14039 | Msa1435630:CDS | 40.0% | |
| TGACAAGTAATCTCTTGGGT+TGG | + | tig0027765:14054-14073 | None:intergenic | 40.0% | |
| AGAGACAGTGAGATTGCAAT+AGG | - | tig0027765:14507-14526 | Msa1435630:intron | 40.0% | |
| TTACTGGTGGCTATATGGTT+TGG | + | tig0027765:14543-14562 | None:intergenic | 40.0% | |
| GTCTATTACTGGTGGCTATA+TGG | + | tig0027765:14548-14567 | None:intergenic | 40.0% | |
| !! | TTTTGGTGGTCTATTACTGG+TGG | + | tig0027765:14556-14575 | None:intergenic | 40.0% |
| ACCAGTAATAGACCACCAAA+AGG | - | tig0027765:14555-14574 | Msa1435630:intron | 40.0% | |
| !! | TCCTTTTGGTGGTCTATTAC+TGG | + | tig0027765:14559-14578 | None:intergenic | 40.0% |
| ATGGATTTAGACGTGCACTA+TGG | - | tig0027765:14586-14605 | Msa1435630:intron | 40.0% | |
| TATGAGCACCTTGGAGATAT+TGG | - | tig0027765:14609-14628 | Msa1435630:intron | 40.0% | |
| ! | ATCGTTTTGCTGAGACCAAT+TGG | - | tig0027765:14685-14704 | Msa1435630:intron | 40.0% |
| ! | TCGTTTTGCTGAGACCAATT+GGG | - | tig0027765:14686-14705 | Msa1435630:intron | 40.0% |
| AAATCCTGGAAGAGCAGTTA+TGG | + | tig0027765:14796-14815 | None:intergenic | 40.0% | |
| ACATTCAGTTTCTCTCCACA+TGG | + | tig0027765:14894-14913 | None:intergenic | 40.0% | |
| CATGGAAATGGAGGTTAAGG+AGG | + | tig0027765:11470-11489 | None:intergenic | 45.0% | |
| GCAGAGATCGAAATTGCATC+CGG | + | tig0027765:11684-11703 | None:intergenic | 45.0% | |
| ! | GATATACCTCTGGCTTGCAT+TGG | + | tig0027765:12010-12029 | None:intergenic | 45.0% |
| GAATGATAGGTAGCCCGAAA+TGG | - | tig0027765:12227-12246 | Msa1435630:intron | 45.0% | |
| CAATTAGAGTCGCTCCAATG+GGG | + | tig0027765:12321-12340 | None:intergenic | 45.0% | |
| CCAATTAGAGTCGCTCCAAT+GGG | + | tig0027765:12322-12341 | None:intergenic | 45.0% | |
| TCCAATTAGAGTCGCTCCAA+TGG | + | tig0027765:12323-12342 | None:intergenic | 45.0% | |
| GTGGATCATCGTCCAATACA+AGG | - | tig0027765:12412-12431 | Msa1435630:CDS | 45.0% | |
| GATCATCGTCCAATACAAGG+CGG | - | tig0027765:12415-12434 | Msa1435630:CDS | 45.0% | |
| TCACAAGGACTAAAGAGTCC+AGG | - | tig0027765:12493-12512 | Msa1435630:CDS | 45.0% | |
| TGAGGAACTCCTTGAAATCC+TGG | + | tig0027765:12514-12533 | None:intergenic | 45.0% | |
| TACCGTTCTACTCCATCCAA+TGG | + | tig0027765:12619-12638 | None:intergenic | 45.0% | |
| GTATGTGCCGGGAAAATGTT+GGG | - | tig0027765:12636-12655 | Msa1435630:CDS | 45.0% | |
| GGTGGGATTGATCTTTGTGA+TGG | - | tig0027765:13090-13109 | Msa1435630:CDS | 45.0% | |
| ATATCATGCCATGGCTCTCT+AGG | + | tig0027765:13411-13430 | None:intergenic | 45.0% | |
| AACTAGAAGGACCTGTTGCA+TGG | - | tig0027765:13439-13458 | Msa1435630:CDS | 45.0% | |
| ACTAGAAGGACCTGTTGCAT+GGG | - | tig0027765:13440-13459 | Msa1435630:CDS | 45.0% | |
| CGAAACATGCTTGAAGGTAG+TGG | + | tig0027765:13522-13541 | None:intergenic | 45.0% | |
| TCGTGTATCGAATGTTGCCA+CGG | - | tig0027765:13557-13576 | Msa1435630:CDS | 45.0% | |
| TGCTTTGCACCTCATACCAA+AGG | - | tig0027765:13839-13858 | Msa1435630:CDS | 45.0% | |
| GTGACAACTCCTTTGGTATG+AGG | + | tig0027765:13851-13870 | None:intergenic | 45.0% | |
| ! | GCACTTTCAGGTATACCTTC+TGG | + | tig0027765:13939-13958 | None:intergenic | 45.0% |
| ! | GCTTGAACTGAAGCACTTTC+AGG | + | tig0027765:13951-13970 | None:intergenic | 45.0% |
| TTATTGCCTTGGAAACCGAG+AGG | - | tig0027765:14076-14095 | Msa1435630:CDS | 45.0% | |
| TATTGCCTTGGAAACCGAGA+GGG | - | tig0027765:14077-14096 | Msa1435630:CDS | 45.0% | |
| !! | TGGAGGAAGGTACTCAGATT+TGG | + | tig0027765:14856-14875 | None:intergenic | 45.0% |
| AAGGGAACATGCACAAGCGT+GGG | - | tig0027765:11939-11958 | Msa1435630:CDS | 50.0% | |
| TCAATGCCAATGCAAGCCAG+AGG | - | tig0027765:12001-12020 | Msa1435630:CDS | 50.0% | |
| CCCATTGGAGCGACTCTAAT+TGG | - | tig0027765:12319-12338 | Msa1435630:CDS | 50.0% | |
| TGGAGTAGAACGGTATGTGC+CGG | - | tig0027765:12624-12643 | Msa1435630:CDS | 50.0% | |
| GGTATGTGCCGGGAAAATGT+TGG | - | tig0027765:12635-12654 | Msa1435630:CDS | 50.0% | |
| AAGAAGCTCCCCAAGAGTGA+TGG | + | tig0027765:12773-12792 | None:intergenic | 50.0% | |
| TTCCATCACCAGGGTTACGT+GGG | + | tig0027765:12948-12967 | None:intergenic | 50.0% | |
| CACAACACATCCCATGCAAC+AGG | + | tig0027765:13453-13472 | None:intergenic | 50.0% | |
| CGGCTTCTGTTGGATCTTGA+GGG | + | tig0027765:13650-13669 | None:intergenic | 50.0% | |
| !!! | CCTTTTTCAGCGGCTTCTGT+TGG | + | tig0027765:13660-13679 | None:intergenic | 50.0% |
| CCAACAGAAGCCGCTGAAAA+AGG | - | tig0027765:13657-13676 | Msa1435630:CDS | 50.0% | |
| GTCATTCCAATGTGGCCAGA+AGG | - | tig0027765:13921-13940 | Msa1435630:CDS | 50.0% | |
| GGTATACCTTCTGGCCACAT+TGG | + | tig0027765:13930-13949 | None:intergenic | 50.0% | |
| TCTTACCCTCTCGGTTTCCA+AGG | + | tig0027765:14085-14104 | None:intergenic | 50.0% | |
| GCACTATGGTATGAGCACCT+TGG | - | tig0027765:14600-14619 | Msa1435630:intron | 50.0% | |
| GGAACCATAACTGCTCTTCC+AGG | - | tig0027765:14789-14808 | Msa1435630:CDS | 50.0% | |
| AGGTGGTGAGAATTGGAGGA+AGG | + | tig0027765:14869-14888 | None:intergenic | 50.0% | |
| CATGGCTAGGTGGTGAGAAT+TGG | + | tig0027765:14876-14895 | None:intergenic | 50.0% | |
| ATTCTCACCACCTAGCCATG+TGG | - | tig0027765:14876-14895 | Msa1435630:exon | 50.0% | |
| TTTCTCTCCACATGGCTAGG+TGG | + | tig0027765:14886-14905 | None:intergenic | 50.0% | |
| CAGTTTCTCTCCACATGGCT+AGG | + | tig0027765:14889-14908 | None:intergenic | 50.0% | |
| CAAGGGAACATGCACAAGCG+TGG | - | tig0027765:11938-11957 | Msa1435630:CDS | 55.0% | |
| AGGGAACATGCACAAGCGTG+GGG | - | tig0027765:11940-11959 | Msa1435630:CDS | 55.0% | |
| GGAGTAGAACGGTATGTGCC+GGG | - | tig0027765:12625-12644 | Msa1435630:CDS | 55.0% | |
| ! | GTTTTGTGCCCACGTAACCC+TGG | - | tig0027765:12937-12956 | Msa1435630:CDS | 55.0% |
| CTTCCATCACCAGGGTTACG+TGG | + | tig0027765:12949-12968 | None:intergenic | 55.0% | |
| AAGGTGGTCCTAGAGAGCCA+TGG | - | tig0027765:13400-13419 | Msa1435630:CDS | 55.0% | |
| !! | ATCGATGCTGGTGCTGCTTC+TGG | - | tig0027765:13621-13640 | Msa1435630:CDS | 55.0% |
| GCGGCTTCTGTTGGATCTTG+AGG | + | tig0027765:13651-13670 | None:intergenic | 55.0% | |
| ! | TCAGGTTCTGGTGCCTCTGT+AGG | + | tig0027765:14125-14144 | None:intergenic | 55.0% |
| GGCTAGGTGGTGAGAATTGG+AGG | + | tig0027765:14873-14892 | None:intergenic | 55.0% | |
| TGCCCACGTAACCCTGGTGA+TGG | - | tig0027765:12943-12962 | Msa1435630:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027765 | gene | 11439 | 15055 | 11439 | ID=Msa1435630;Name=Msa1435630 |
| tig0027765 | mRNA | 11439 | 15055 | 11439 | ID=Msa1435630-mRNA-1;Parent=Msa1435630;Name=Msa1435630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=85|0.75|1|1|0.75|0.6|5|165|799 |
| tig0027765 | exon | 11439 | 12049 | 11439 | ID=Msa1435630-mRNA-1:exon:9812;Parent=Msa1435630-mRNA-1 |
| tig0027765 | exon | 12282 | 13109 | 12282 | ID=Msa1435630-mRNA-1:exon:9811;Parent=Msa1435630-mRNA-1 |
| tig0027765 | exon | 13299 | 14328 | 13299 | ID=Msa1435630-mRNA-1:exon:9810;Parent=Msa1435630-mRNA-1 |
| tig0027765 | exon | 14785 | 14915 | 14785 | ID=Msa1435630-mRNA-1:exon:9809;Parent=Msa1435630-mRNA-1 |
| tig0027765 | exon | 15006 | 15055 | 15006 | ID=Msa1435630-mRNA-1:exon:9808;Parent=Msa1435630-mRNA-1 |
| tig0027765 | five_prime_UTR | 15006 | 15055 | 15006 | ID=Msa1435630-mRNA-1:five_prime_utr;Parent=Msa1435630-mRNA-1 |
| tig0027765 | five_prime_UTR | 14881 | 14915 | 14881 | ID=Msa1435630-mRNA-1:five_prime_utr;Parent=Msa1435630-mRNA-1 |
| tig0027765 | CDS | 14785 | 14880 | 14785 | ID=Msa1435630-mRNA-1:cds;Parent=Msa1435630-mRNA-1 |
| tig0027765 | CDS | 13299 | 14328 | 13299 | ID=Msa1435630-mRNA-1:cds;Parent=Msa1435630-mRNA-1 |
| tig0027765 | CDS | 12282 | 13109 | 12282 | ID=Msa1435630-mRNA-1:cds;Parent=Msa1435630-mRNA-1 |
| tig0027765 | CDS | 11604 | 12049 | 11604 | ID=Msa1435630-mRNA-1:cds;Parent=Msa1435630-mRNA-1 |
| tig0027765 | three_prime_UTR | 11439 | 11603 | 11439 | ID=Msa1435630-mRNA-1:three_prime_utr;Parent=Msa1435630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
