AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380210 MtrunA17_Chr3g0145461 99.302 573 4 0 4 576 2 574 0.0 1186
Msa0380210 MtrunA17_Chr1g0200341 73.545 567 131 7 14 575 2 554 0.0 876
Msa0380210 MtrunA17_Chr1g0200331 68.959 567 143 6 11 575 17 552 0.0 811
Msa0380210 MtrunA17_Chr4g0038561 78.178 472 102 1 102 573 40 510 0.0 785
Msa0380210 MtrunA17_Chr8g0383361 55.354 495 215 2 80 568 132 626 0.0 585
Msa0380210 MtrunA17_Chr7g0271621 57.269 454 191 1 113 563 166 619 0.0 567
Msa0380210 MtrunA17_Chr4g0068901 56.522 460 194 2 110 563 181 640 0.0 566
Msa0380210 MtrunA17_Chr1g0192991 56.455 457 195 2 113 565 113 569 0.0 558
Msa0380210 MtrunA17_Chr3g0082721 53.939 165 76 0 302 466 2 166 2.80e-65 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380210 AT4G34860.2 79.292 565 109 5 14 575 11 570 0.0 941
Msa0380210 AT4G34860.1 79.292 565 109 5 14 575 11 570 0.0 941
Msa0380210 AT4G34860.3 79.292 565 109 5 14 575 11 570 0.0 941
Msa0380210 AT4G09510.1 73.571 560 132 4 19 575 11 557 0.0 876
Msa0380210 AT1G22650.1 72.906 561 121 7 19 575 1 534 0.0 846
Msa0380210 AT1G35580.2 71.301 561 140 5 18 574 5 548 0.0 838
Msa0380210 AT1G35580.1 71.301 561 140 5 18 574 5 548 0.0 838
Msa0380210 AT1G72000.1 77.126 494 108 3 86 575 7 499 0.0 814
Msa0380210 AT4G09510.2 73.810 462 106 3 19 477 11 460 0.0 725
Msa0380210 AT1G35580.3 71.002 469 116 4 18 482 5 457 0.0 696
Msa0380210 AT1G22650.2 71.277 470 105 6 19 484 1 444 0.0 689
Msa0380210 AT5G22510.2 51.337 561 240 5 11 565 59 592 0.0 587
Msa0380210 AT5G22510.1 51.337 561 240 5 11 565 59 592 0.0 587
Msa0380210 AT1G56560.1 51.908 524 234 5 59 565 68 590 0.0 574
Msa0380210 AT3G06500.1 53.170 489 220 3 81 563 153 638 0.0 551
Msa0380210 AT3G05820.2 55.142 457 199 3 113 563 150 606 0.0 545
Msa0380210 AT3G06500.2 54.082 392 175 1 177 563 48 439 7.30e-161 468
Msa0380210 AT3G05820.1 56.111 360 152 3 113 466 150 509 1.73e-146 432

Find 154 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGTTGATTCTGGATTT+TGG 0.107168 3_1:+81858517 Msa0380210:CDS
CTTGATGATCCTTCACATTT+AGG 0.135844 3_1:+81860198 Msa0380210:CDS
TTATGATTTCAGGGTGTTTA+TGG 0.137912 3_1:+81859018 Msa0380210:intron
CATCATGGCGGATACTTTAT+TGG 0.172811 3_1:+81859312 Msa0380210:CDS
CTCATTTCATTCATATAAAA+AGG 0.185980 3_1:-81860708 None:intergenic
CAACTAAAGTATATATTAAA+AGG 0.216045 3_1:-81860809 None:intergenic
CTGGTCTATTGCTGGTTATT+TGG 0.241651 3_1:+81860161 Msa0380210:CDS
TGAACAGTCAGTTGCAATTA+TGG 0.252442 3_1:+81859416 Msa0380210:CDS
TTTGACTTGCAATGATAAAA+AGG 0.254816 3_1:+81860317 Msa0380210:three_prime_UTR
GAAACCTTGATAGCAGATTT+TGG 0.254882 3_1:+81858471 Msa0380210:CDS
TGCTGAAGGGAAAGAGTTTA+TGG 0.259291 3_1:+81859110 Msa0380210:CDS
CAGGAACAGCTTGCAGTTCT+TGG 0.261482 3_1:+81860539 Msa0380210:three_prime_UTR
TCACGGTGGGAAGAATTAAT+TGG 0.263132 3_1:+81859450 Msa0380210:CDS
TCATATCAAATCCCAATAAA+AGG 0.283068 3_1:-81860761 None:intergenic
AGGGTTGCTCCTGTTGATTC+TGG 0.284587 3_1:+81858510 Msa0380210:CDS
AATTCAAGCATTGTTCTTCA+TGG 0.292043 3_1:+81859053 Msa0380210:CDS
CCAATAAAAGGTAAAATAGA+AGG 0.314414 3_1:-81860749 None:intergenic
AACTCTTTCCCTTCAGCATC+TGG 0.317968 3_1:-81859105 None:intergenic
CTCTCAATGTTCAAAGTCCT+TGG 0.321428 3_1:-81857765 None:intergenic
ATCATATGAGAAGCCACTTT+TGG 0.334217 3_1:+81859166 Msa0380210:CDS
ATCATGGCGGATACTTTATT+GGG 0.335197 3_1:+81859313 Msa0380210:CDS
GAAACCAATGGTTCGTTATC+AGG 0.336858 3_1:+81860520 Msa0380210:three_prime_UTR
AACAATGCTTGAATTTCAAT+TGG 0.347066 3_1:-81859045 None:intergenic
AGAAAATTCTTAACAATGTC+TGG 0.354613 3_1:-81858336 None:intergenic
TGGTGGTTACAGTTATGTTA+TGG 0.354882 3_1:+81859983 Msa0380210:intron
TTACAATTAGATTGAAATTA+CGG 0.355244 3_1:+81860596 Msa0380210:three_prime_UTR
TACTCCAAGATCACTGCTAT+TGG 0.358290 3_1:+81857932 Msa0380210:CDS
CCTGAGAGCTTCCCAAGCTT+CGG 0.362174 3_1:-81857973 None:intergenic
TTCCCGATTCTTTACCAGAT+TGG 0.363867 3_1:+81859271 Msa0380210:CDS
TGCTCAAGAGATCAAATTCA+TGG 0.367029 3_1:+81860262 Msa0380210:CDS
TCTGCGGCGGCTATCAAGAC+TGG 0.369898 3_1:+81860012 Msa0380210:CDS
CTGAGAGCTTCCCAAGCTTC+GGG 0.371080 3_1:-81857972 None:intergenic
CGCGGTTTCTGACCGGATCA+TGG 0.375080 3_1:-81858449 None:intergenic
ACCTCACAGCAAGAAAAGTA+TGG 0.385720 3_1:-81856686 None:intergenic
CACGGTGGGAAGAATTAATT+GGG 0.386404 3_1:+81859451 Msa0380210:CDS
TGCCAAACCTGGTCTATTGC+TGG 0.394176 3_1:+81860153 Msa0380210:CDS
TTCACCAAAATCTGCTATCA+AGG 0.396923 3_1:-81858475 None:intergenic
AAAGATTGATAGGTTTCATC+TGG 0.409232 3_1:+81858392 Msa0380210:CDS
AGGCTTATCTCCACGTCTAT+TGG 0.412169 3_1:+81857830 Msa0380210:CDS
CCGAAGCTTGGGAAGCTCTC+AGG 0.414554 3_1:+81857973 Msa0380210:CDS
AGTTGGAACAATTGCTGCCT+TGG 0.417688 3_1:+81858025 Msa0380210:CDS
TGCAAGTGCTAAGATATTGC+TGG 0.418440 3_1:+81857613 Msa0380210:five_prime_UTR
TGTGTTCCGTCATAATATTC+CGG 0.421532 3_1:-81860099 None:intergenic
CATGAATGGAGGATCATAAC+AGG 0.421806 3_1:+81859513 Msa0380210:CDS
AATCCAATCTGGTAAAGAAT+CGG 0.424424 3_1:-81859274 None:intergenic
CTAGATGGAGTTACCACAAT+GGG 0.425352 3_1:+81859553 Msa0380210:CDS
AGACTCTTCGTCTTCAATCA+TGG 0.427851 3_1:+81858364 Msa0380210:CDS
AACCAGCAATAGACCAGGTT+TGG 0.430273 3_1:-81860155 None:intergenic
AGACTTTGTTCCAAGTGCTC+TGG 0.430586 3_1:+81858293 Msa0380210:CDS
TCAATGAGTGAACTATCAAT+AGG 0.444042 3_1:+81857810 Msa0380210:CDS
TTGCTGGTTATTTGGTGGCT+AGG 0.446100 3_1:+81860169 Msa0380210:CDS
GGAAGCTCTCAGGCGTTCCT+TGG 0.449024 3_1:+81857983 Msa0380210:CDS
AAGGCAGCAATTGTTCCAAC+TGG 0.455491 3_1:-81858023 None:intergenic
ATCTGGCCTCAGCAATTTGA+AGG 0.457938 3_1:-81860059 None:intergenic
CCAACTTTACTATGTGCTGA+TGG 0.459852 3_1:+81858666 Msa0380210:CDS
TTGTGATGAGACCAATCTAT+TGG 0.463367 3_1:-81857657 None:intergenic
GTCTATTGCTGGTTATTTGG+TGG 0.465320 3_1:+81860164 Msa0380210:CDS
ATGTAGTGTCGCAGAATTTG+AGG 0.466289 3_1:+81857713 Msa0380210:CDS
TGGTCTCATCACAATGGTAA+TGG 0.469382 3_1:+81857666 Msa0380210:CDS
CTTGACAACTTCCCTCGCCT+TGG 0.469584 3_1:+81857861 Msa0380210:CDS
AGATTTGTGCACGGGAGAAA+AGG 0.470250 3_1:-81857901 None:intergenic
CCATCAGCACATAGTAAAGT+TGG 0.473576 3_1:-81858666 None:intergenic
TTGGTGAAAGTGCAATAGGC+AGG 0.474019 3_1:+81858490 Msa0380210:CDS
CTTTATTGGGAATGTGAGTC+CGG 0.474021 3_1:+81859326 Msa0380210:CDS
TGACCAGCCTGAATGTCAAA+AGG 0.475180 3_1:+81858593 Msa0380210:CDS
CCAATCTATTGGAGGGGTAG+AGG 0.476513 3_1:-81857646 None:intergenic
GAGTCCAATAGCAGTGATCT+TGG 0.477827 3_1:-81857936 None:intergenic
CACCAAAATCCAGAATCAAC+AGG 0.478739 3_1:-81858519 None:intergenic
CTGAGTTTATGCTTGTCAGA+GGG 0.479869 3_1:+81858630 Msa0380210:CDS
GGAACACATGGTCGATACAT+TGG 0.481896 3_1:+81860114 Msa0380210:CDS
AAGGTTTCGCGGTTTCTGAC+CGG 0.483631 3_1:-81858456 None:intergenic
ATCCAATCTGGTAAAGAATC+GGG 0.484985 3_1:-81859273 None:intergenic
GCTTCAAATCCAACCAAAAG+TGG 0.485151 3_1:-81859179 None:intergenic
GAACAGCTTGCAGTTCTTGG+TGG 0.485168 3_1:+81860542 Msa0380210:three_prime_UTR
TGGTCGATACATTGGGAAGC+AGG 0.486411 3_1:+81860122 Msa0380210:CDS
GACTCTTCGTCTTCAATCAT+GGG 0.486513 3_1:+81858365 Msa0380210:CDS
CTGTTCAGGAGTTGCCAAGC+AGG 0.494417 3_1:-81859400 None:intergenic
CCAGATTGCTAAAAGACAAC+TGG 0.494499 3_1:+81860076 Msa0380210:CDS
GCTTCTCATATGATAGCTTA+AGG 0.495719 3_1:-81859157 None:intergenic
CAACTTTACTATGTGCTGAT+GGG 0.495887 3_1:+81858667 Msa0380210:CDS
GAACACATGGTCGATACATT+GGG 0.500723 3_1:+81860115 Msa0380210:CDS
TGAAGAAGACCGACAGCTAA+AGG 0.501224 3_1:+81860233 Msa0380210:CDS
GTGTTTGCGTATTCCTTCAG+TGG 0.502240 3_1:+81860420 Msa0380210:three_prime_UTR
CGGCTAGGATGGATTTCCGC+TGG 0.506123 3_1:+81859346 Msa0380210:CDS
ATAATTGCAACTGACTGTTC+AGG 0.506227 3_1:-81859414 None:intergenic
CCTCTACCCCTCCAATAGAT+TGG 0.506254 3_1:+81857646 Msa0380210:CDS
GCTTGCAGTTCTTGGTGGAC+TGG 0.508414 3_1:+81860547 Msa0380210:three_prime_UTR
TGAGAATCTTAATTATGATC+AGG 0.512681 3_1:+81858058 Msa0380210:CDS
TGTTCCTGATAACGAACCAT+TGG 0.515177 3_1:-81860524 None:intergenic
GAATTTGATCTCTTGAGCAC+AGG 0.520613 3_1:-81860258 None:intergenic
TGGAATACCTTAAAACTAGC+AGG 0.523302 3_1:-81858429 None:intergenic
GAATGTGAGTCCGGCTAGGA+TGG 0.524824 3_1:+81859335 Msa0380210:CDS
GAATATTATGACGGAACACA+TGG 0.527626 3_1:+81860102 Msa0380210:CDS
TTTGATTTCATGCCTCATCA+TGG 0.529497 3_1:+81859297 Msa0380210:CDS
CAGCCCTTGAAAATCATGAA+TGG 0.529947 3_1:+81859499 Msa0380210:CDS
TAGCTTCACATTTCGTGATG+TGG 0.535028 3_1:-81860659 None:intergenic
CTGCGGCGGCTATCAAGACT+GGG 0.535342 3_1:+81860013 Msa0380210:CDS
GAAGTAAGAAATGTAGTGAG+TGG 0.535916 3_1:+81860342 Msa0380210:three_prime_UTR
TCTGAGTTTATGCTTGTCAG+AGG 0.536420 3_1:+81858629 Msa0380210:CDS
CGTGCATACACAAAATCTAC+AGG 0.544504 3_1:+81858555 Msa0380210:CDS
AGGCTCGAAAATGCCAAACC+TGG 0.550502 3_1:+81860142 Msa0380210:CDS
GATAGGTTTCATCTGGCAGA+AGG 0.553855 3_1:+81858399 Msa0380210:CDS
TTAAGACCAGATTTGTGCAC+GGG 0.557462 3_1:-81857909 None:intergenic
GCTGGATAACAAACTTTGAC+AGG 0.557935 3_1:-81859480 None:intergenic
GCACAGGATCCTTTAGCTGT+CGG 0.560516 3_1:-81860242 None:intergenic
ACTTATGAGCATTCCACTGA+AGG 0.564041 3_1:-81860433 None:intergenic
TTGCTTAAGCCAGATGCTGA+AGG 0.566251 3_1:+81859096 Msa0380210:CDS
TTGGGAATGTGAGTCCGGCT+AGG 0.569278 3_1:+81859331 Msa0380210:CDS
AATCTGCTATCAAGGTTTCG+CGG 0.570404 3_1:-81858467 None:intergenic
GATGAGACCAATCTATTGGA+GGG 0.575783 3_1:-81857653 None:intergenic
GACCAGCCTGAATGTCAAAA+GGG 0.576127 3_1:+81858594 Msa0380210:CDS
TATGCACAAGGTGAAACCAA+TGG 0.579457 3_1:+81860508 Msa0380210:three_prime_UTR
TGATGAGACCAATCTATTGG+AGG 0.580435 3_1:-81857654 None:intergenic
TGAGTTTATGCTTGTCAGAG+GGG 0.580700 3_1:+81858631 Msa0380210:CDS
ATCTGGCTTAAGCAATAGCA+TGG 0.582923 3_1:-81859088 None:intergenic
CTGTATGATTGATCGTAGAA+TGG 0.588231 3_1:+81858692 Msa0380210:CDS
ATAGGTTTCATCTGGCAGAA+GGG 0.588613 3_1:+81858400 Msa0380210:CDS
CTAAAGTATTAGATAAGCCA+AGG 0.589167 3_1:+81857748 Msa0380210:CDS
CAGCGGAAATCCATCCTAGC+CGG 0.590490 3_1:-81859345 None:intergenic
GCTATAATACCTAAATGTGA+AGG 0.591073 3_1:-81860207 None:intergenic
CAATAAAAGGTAAAATAGAA+GGG 0.591260 3_1:-81860748 None:intergenic
TAGGTTTCATCTGGCAGAAG+GGG 0.591697 3_1:+81858401 Msa0380210:CDS
TGCTTAAGCCAGATGCTGAA+GGG 0.597457 3_1:+81859097 Msa0380210:CDS
CAAGATGTTCTCCAAGGCGA+GGG 0.604363 3_1:-81857872 None:intergenic
CCCTTGAAAATCATGAATGG+AGG 0.605532 3_1:+81859502 Msa0380210:CDS
ATAAAGTATCCGCCATGATG+AGG 0.605960 3_1:-81859309 None:intergenic
TGGTGAAAGTGCAATAGGCA+GGG 0.613958 3_1:+81858491 Msa0380210:CDS
TCAAGATGTTCTCCAAGGCG+AGG 0.629033 3_1:-81857873 None:intergenic
ATTAAGACCAGATTTGTGCA+CGG 0.631492 3_1:-81857910 None:intergenic
GTAGTGAGTGGAAGAATGTG+TGG 0.637024 3_1:+81860354 Msa0380210:three_prime_UTR
ATTGCTAAAAGACAACTGGC+CGG 0.640390 3_1:+81860080 Msa0380210:CDS
ATACGCAAACACTAGACATG+TGG 0.642445 3_1:-81860409 None:intergenic
AACTGGCCGGAATATTATGA+CGG 0.645214 3_1:+81860093 Msa0380210:CDS
CAAATAACCAGCAATAGACC+AGG 0.645389 3_1:-81860160 None:intergenic
GGATCTCATAGAATCACGGT+GGG 0.649862 3_1:+81859437 Msa0380210:CDS
TAAAAGGTAAAATAGAAGGG+TGG 0.651885 3_1:-81860745 None:intergenic
CATGATCAAGATGTTCTCCA+AGG 0.652753 3_1:-81857878 None:intergenic
ATTCTCATCAGAATTGTCCA+AGG 0.653274 3_1:-81858042 None:intergenic
TTATGGATCTCATAGAATCA+CGG 0.654471 3_1:+81859433 Msa0380210:CDS
TCTGGCCTCAGCAATTTGAA+GGG 0.657188 3_1:-81860058 None:intergenic
TGAAACAGAATGATTCATGA+CGG 0.658315 3_1:-81860384 None:intergenic
ACGTGCCCTTCAAATTGCTG+AGG 0.658820 3_1:+81860053 Msa0380210:CDS
GATTTCATGCCTCATCATGG+CGG 0.677929 3_1:+81859300 Msa0380210:CDS
ACTAGATGGAGTTACCACAA+TGG 0.679491 3_1:+81859552 Msa0380210:CDS
ATGAGACCAATCTATTGGAG+GGG 0.687920 3_1:-81857652 None:intergenic
AAATTGCTATGCAATTACCA+AGG 0.691776 3_1:-81859374 None:intergenic
ATAGATTGGTCTCATCACAA+TGG 0.702971 3_1:+81857660 Msa0380210:CDS
TAGATGGAGTTACCACAATG+GGG 0.708965 3_1:+81859554 Msa0380210:CDS
AATCACAATCACAATTCACG+AGG 0.714083 3_1:+81856622 Msa0380210:five_prime_UTR
TGGATCTCATAGAATCACGG+TGG 0.714752 3_1:+81859436 Msa0380210:CDS
AGATGGAGTTACCACAATGG+GGG 0.717268 3_1:+81859555 Msa0380210:CDS
AATTACCAAGGCAAAACCAG+CGG 0.718732 3_1:-81859362 None:intergenic
TTCACCACGAAAATGTACCA+AGG 0.730398 3_1:-81858000 None:intergenic
ACGGTGGGAAGAATTAATTG+GGG 0.783541 3_1:+81859452 Msa0380210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTATATATATAATTCT+AGG + chr3_1:81857139-81857158 Msa0380210:intron 10.0%
!! TTCTTATATATATAATTCTA+GGG + chr3_1:81857140-81857159 Msa0380210:intron 10.0%
!! ATAAATAAAAAATGAAGAAA+TGG - chr3_1:81858995-81859014 None:intergenic 10.0%
!! TATTTATAATTTATGATTTC+AGG + chr3_1:81859008-81859027 Msa0380210:intron 10.0%
!! ATTTATAATTTATGATTTCA+GGG + chr3_1:81859009-81859028 Msa0380210:intron 10.0%
!! AAAGAAAGATAATTAAATCT+GGG - chr3_1:81857042-81857061 None:intergenic 15.0%
!! AAAAGAAAGATAATTAAATC+TGG - chr3_1:81857043-81857062 None:intergenic 15.0%
!! TGATATAAATTTACAAAGTT+GGG - chr3_1:81858800-81858819 None:intergenic 15.0%
!! TTACAATTAGATTGAAATTA+CGG + chr3_1:81860596-81860615 Msa0380210:three_prime_UTR 15.0%
!! ATTCATATAAAAAGGATAAA+TGG - chr3_1:81860703-81860722 None:intergenic 15.0%
!! CAACTAAAGTATATATTAAA+AGG - chr3_1:81860812-81860831 None:intergenic 15.0%
!! CTATTCTATTCTATTCTATT+AGG - chr3_1:81856743-81856762 None:intergenic 20.0%
!! ATGAAATTGTACGAAAAAAA+AGG - chr3_1:81858100-81858119 None:intergenic 20.0%
!! AATGGATGGAAAAATATAAA+AGG - chr3_1:81858214-81858233 None:intergenic 20.0%
!! GATATAAATTTACAAAGTTG+GGG - chr3_1:81858799-81858818 None:intergenic 20.0%
!! GTGATATAAATTTACAAAGT+TGG - chr3_1:81858801-81858820 None:intergenic 20.0%
!!! AAATTCTCTTCTTTTTTTTC+TGG - chr3_1:81859903-81859922 None:intergenic 20.0%
!!! TAGCATTTGCTTTTTTAATA+TGG + chr3_1:81859948-81859967 Msa0380210:intron 20.0%
!!! CTTTTTTAATATGGTGATAT+TGG + chr3_1:81859957-81859976 Msa0380210:intron 20.0%
!! CTCATTTCATTCATATAAAA+AGG - chr3_1:81860711-81860730 None:intergenic 20.0%
!! CAATAAAAGGTAAAATAGAA+GGG - chr3_1:81860751-81860770 None:intergenic 20.0%
!!! CTTCTATTTTACCTTTTATT+GGG + chr3_1:81860750-81860769 Msa0380210:three_prime_UTR 20.0%
!!! CGAAAGCATTATGTTAATTA+TGG - chr3_1:81856907-81856926 None:intergenic 25.0%
!! CTCAACATCATTTCAAATTT+TGG + chr3_1:81857243-81857262 Msa0380210:intron 25.0%
! TGAGAATCTTAATTATGATC+AGG + chr3_1:81858058-81858077 Msa0380210:CDS 25.0%
!! AATGGATTTGTACTTAACTT+TGG + chr3_1:81858144-81858163 Msa0380210:intron 25.0%
! AGAAAATTCTTAACAATGTC+TGG - chr3_1:81858339-81858358 None:intergenic 25.0%
!!! TTGAGTTTTGATTTTTACAC+AGG - chr3_1:81858836-81858855 None:intergenic 25.0%
!! ATTGTTATTCTCATTCACTT+TGG - chr3_1:81858890-81858909 None:intergenic 25.0%
! AACAATGCTTGAATTTCAAT+TGG - chr3_1:81859048-81859067 None:intergenic 25.0%
! ATGAAATCAAAAATCCAATC+TGG - chr3_1:81859288-81859307 None:intergenic 25.0%
!!! AACTCCATCTAGTATTTTTT+GGG - chr3_1:81859545-81859564 None:intergenic 25.0%
!!! TAACTCCATCTAGTATTTTT+TGG - chr3_1:81859546-81859565 None:intergenic 25.0%
! AAACTCTATCATTTCAAACT+AGG + chr3_1:81859829-81859848 Msa0380210:intron 25.0%
!! TAATATGGTGATATTGGTTA+TGG + chr3_1:81859963-81859982 Msa0380210:intron 25.0%
!!! TTTGACTTGCAATGATAAAA+AGG + chr3_1:81860317-81860336 Msa0380210:three_prime_UTR 25.0%
! CATATAAAAAGGATAAATGG+AGG - chr3_1:81860700-81860719 None:intergenic 25.0%
! CCAATAAAAGGTAAAATAGA+AGG - chr3_1:81860752-81860771 None:intergenic 25.0%
!! CCTTCTATTTTACCTTTTAT+TGG + chr3_1:81860749-81860768 Msa0380210:three_prime_UTR 25.0%
! TCATATCAAATCCCAATAAA+AGG - chr3_1:81860764-81860783 None:intergenic 25.0%
! TAATTCTAGGGATCTTGAAT+TGG + chr3_1:81857152-81857171 Msa0380210:intron 30.0%
! TCGTGTTCTTAATCATTTTG+TGG + chr3_1:81857191-81857210 Msa0380210:intron 30.0%
AATTAACCACTTCATTACCA+TGG + chr3_1:81857340-81857359 Msa0380210:intron 30.0%
! CTAAAGTATTAGATAAGCCA+AGG + chr3_1:81857748-81857767 Msa0380210:CDS 30.0%
TCAATGAGTGAACTATCAAT+AGG + chr3_1:81857810-81857829 Msa0380210:CDS 30.0%
AAAGTCTCTAACAAAAACCT+AGG - chr3_1:81858280-81858299 None:intergenic 30.0%
CATGGGAAAAAAAGATTGAT+AGG + chr3_1:81858382-81858401 Msa0380210:CDS 30.0%
AAAGATTGATAGGTTTCATC+TGG + chr3_1:81858392-81858411 Msa0380210:CDS 30.0%
!!! TTTTAAGGTATTCCATGATC+CGG + chr3_1:81858437-81858456 Msa0380210:CDS 30.0%
TTTATTCATAATCTACTGCC+TGG + chr3_1:81858729-81858748 Msa0380210:intron 30.0%
!! ATCATCAATGCTTATTTTCC+AGG - chr3_1:81858750-81858769 None:intergenic 30.0%
!! GGAAAATAAGCATTGATGAT+AGG + chr3_1:81858750-81858769 Msa0380210:intron 30.0%
ATTCTAGATATGCTACTACT+AGG + chr3_1:81858921-81858940 Msa0380210:intron 30.0%
AAATGGATAGATTAACGACT+AGG - chr3_1:81858978-81858997 None:intergenic 30.0%
! TTATGATTTCAGGGTGTTTA+TGG + chr3_1:81859018-81859037 Msa0380210:intron 30.0%
! AATTCAAGCATTGTTCTTCA+TGG + chr3_1:81859053-81859072 Msa0380210:CDS 30.0%
AATCCAATCTGGTAAAGAAT+CGG - chr3_1:81859277-81859296 None:intergenic 30.0%
AAATTGCTATGCAATTACCA+AGG - chr3_1:81859377-81859396 None:intergenic 30.0%
TTATGGATCTCATAGAATCA+CGG + chr3_1:81859433-81859452 Msa0380210:CDS 30.0%
TCATCATTAAACAAATGCAG+TGG + chr3_1:81859671-81859690 Msa0380210:intron 30.0%
! TATGTTATGGTTTTTGTCTG+CGG + chr3_1:81859996-81860015 Msa0380210:CDS 30.0%
GCTATAATACCTAAATGTGA+AGG - chr3_1:81860210-81860229 None:intergenic 30.0%
TGAAACAGAATGATTCATGA+CGG - chr3_1:81860387-81860406 None:intergenic 30.0%
!! GAAAAGTTGTTTTATGCACA+AGG + chr3_1:81860496-81860515 Msa0380210:three_prime_UTR 30.0%
! TAGATTGTGTTTTCTTGAAC+TGG + chr3_1:81860631-81860650 Msa0380210:three_prime_UTR 30.0%
TAAAAGGTAAAATAGAAGGG+TGG - chr3_1:81860748-81860767 None:intergenic 30.0%
!!! TCACTAGCATCTATTTTTTC+TGG + chr3_1:81860785-81860804 Msa0380210:three_prime_UTR 30.0%
AATCACAATCACAATTCACG+AGG + chr3_1:81856622-81856641 Msa0380210:five_prime_UTR 35.0%
TATGAATATGAACGTCGTGA+TGG - chr3_1:81856801-81856820 None:intergenic 35.0%
! TCTCTCATGCTTTCTTGTTT+CGG + chr3_1:81856854-81856873 Msa0380210:intron 35.0%
! CATTGACGTAACGTATTTTG+AGG + chr3_1:81856978-81856997 Msa0380210:intron 35.0%
AGGAAAGAAAAAGATGTGCA+TGG - chr3_1:81857006-81857025 None:intergenic 35.0%
GTAATGAAGTGGTTAATTCC+TGG - chr3_1:81857338-81857357 None:intergenic 35.0%
! ATAAGTCCATGGTAATGAAG+TGG - chr3_1:81857349-81857368 None:intergenic 35.0%
GATAAGCTCAAATAAGTCCA+TGG - chr3_1:81857360-81857379 None:intergenic 35.0%
AAGAAGTTGTGTATCCTAGA+AGG + chr3_1:81857520-81857539 Msa0380210:intron 35.0%
AGAAGTTGTGTATCCTAGAA+GGG + chr3_1:81857521-81857540 Msa0380210:intron 35.0%
ATTACCAATATGACCCTTCT+AGG - chr3_1:81857537-81857556 None:intergenic 35.0%
TTGTGATGAGACCAATCTAT+TGG - chr3_1:81857660-81857679 None:intergenic 35.0%
!! ATAGATTGGTCTCATCACAA+TGG + chr3_1:81857660-81857679 Msa0380210:CDS 35.0%
ATTAAGACCAGATTTGTGCA+CGG - chr3_1:81857913-81857932 None:intergenic 35.0%
ATTCTCATCAGAATTGTCCA+AGG - chr3_1:81858045-81858064 None:intergenic 35.0%
!! TAACTTTGGAGTCCCTAATA+TGG + chr3_1:81858158-81858177 Msa0380210:intron 35.0%
CATAGGAAACTCAAAATGGA+TGG - chr3_1:81858228-81858247 None:intergenic 35.0%
!!! CATCCATTTTGAGTTTCCTA+TGG + chr3_1:81858226-81858245 Msa0380210:intron 35.0%
CAAGTATAATTCCCCATATC+AGG - chr3_1:81858255-81858274 None:intergenic 35.0%
TGGAATACCTTAAAACTAGC+AGG - chr3_1:81858432-81858451 None:intergenic 35.0%
!! GAAACCTTGATAGCAGATTT+TGG + chr3_1:81858471-81858490 Msa0380210:CDS 35.0%
TTCACCAAAATCTGCTATCA+AGG - chr3_1:81858478-81858497 None:intergenic 35.0%
!! GATTTTGGTGAAAGTGCAAT+AGG + chr3_1:81858486-81858505 Msa0380210:CDS 35.0%
! CAACTTTACTATGTGCTGAT+GGG + chr3_1:81858667-81858686 Msa0380210:CDS 35.0%
CTGTATGATTGATCGTAGAA+TGG + chr3_1:81858692-81858711 Msa0380210:CDS 35.0%
GCTTCTCATATGATAGCTTA+AGG - chr3_1:81859160-81859179 None:intergenic 35.0%
!! ATCATATGAGAAGCCACTTT+TGG + chr3_1:81859166-81859185 Msa0380210:CDS 35.0%
ATCCAATCTGGTAAAGAATC+GGG - chr3_1:81859276-81859295 None:intergenic 35.0%
! TTTGATTTCATGCCTCATCA+TGG + chr3_1:81859297-81859316 Msa0380210:CDS 35.0%
!! ATCATGGCGGATACTTTATT+GGG + chr3_1:81859313-81859332 Msa0380210:CDS 35.0%
ATAATTGCAACTGACTGTTC+AGG - chr3_1:81859417-81859436 None:intergenic 35.0%
TGAACAGTCAGTTGCAATTA+TGG + chr3_1:81859416-81859435 Msa0380210:CDS 35.0%
! CCTCCATTCATGATTTTCAA+GGG - chr3_1:81859505-81859524 None:intergenic 35.0%
! TCCTCCATTCATGATTTTCA+AGG - chr3_1:81859506-81859525 None:intergenic 35.0%
GTGACCCAAAAAATACTAGA+TGG + chr3_1:81859538-81859557 Msa0380210:CDS 35.0%
TTGTTCTGCGAAATTCAGAA+TGG - chr3_1:81859606-81859625 None:intergenic 35.0%
AACAAATGCAGTGGAAACAT+AGG + chr3_1:81859680-81859699 Msa0380210:intron 35.0%
! TATGGTGATATTGGTTATGG+TGG + chr3_1:81859966-81859985 Msa0380210:intron 35.0%
TGGTGGTTACAGTTATGTTA+TGG + chr3_1:81859983-81860002 Msa0380210:intron 35.0%
TGTGTTCCGTCATAATATTC+CGG - chr3_1:81860102-81860121 None:intergenic 35.0%
! GAATATTATGACGGAACACA+TGG + chr3_1:81860102-81860121 Msa0380210:CDS 35.0%
! CTTGATGATCCTTCACATTT+AGG + chr3_1:81860198-81860217 Msa0380210:CDS 35.0%
TGCTCAAGAGATCAAATTCA+TGG + chr3_1:81860262-81860281 Msa0380210:CDS 35.0%
GAAGTAAGAAATGTAGTGAG+TGG + chr3_1:81860342-81860361 Msa0380210:three_prime_UTR 35.0%
!! TCCATACTTTTCTTGCTGTG+AGG + chr3_1:81856685-81856704 Msa0380210:five_prime_UTR 40.0%
ACCTCACAGCAAGAAAAGTA+TGG - chr3_1:81856689-81856708 None:intergenic 40.0%
ATCTGGGAAGCAGCAATTAA+AGG - chr3_1:81857026-81857045 None:intergenic 40.0%
TGAAGCACATACGTACATAC+AGG - chr3_1:81857219-81857238 None:intergenic 40.0%
ACAAAGTCGATCACTAAACC+AGG + chr3_1:81857317-81857336 Msa0380210:intron 40.0%
GTATCCTAGAAGGGTCATAT+TGG + chr3_1:81857530-81857549 Msa0380210:intron 40.0%
CTTTAAATAACCCTGTCTGC+AGG + chr3_1:81857573-81857592 Msa0380210:intron 40.0%
TGCAAGTGCTAAGATATTGC+TGG + chr3_1:81857613-81857632 Msa0380210:five_prime_UTR 40.0%
ATGAGACCAATCTATTGGAG+GGG - chr3_1:81857655-81857674 None:intergenic 40.0%
GATGAGACCAATCTATTGGA+GGG - chr3_1:81857656-81857675 None:intergenic 40.0%
TGATGAGACCAATCTATTGG+AGG - chr3_1:81857657-81857676 None:intergenic 40.0%
TGGTCTCATCACAATGGTAA+TGG + chr3_1:81857666-81857685 Msa0380210:CDS 40.0%
ATGTAGTGTCGCAGAATTTG+AGG + chr3_1:81857713-81857732 Msa0380210:CDS 40.0%
CTCTCAATGTTCAAAGTCCT+TGG - chr3_1:81857768-81857787 None:intergenic 40.0%
! AGGGAAGTTGTCAAGTTTTG+AGG - chr3_1:81857856-81857875 None:intergenic 40.0%
CATGATCAAGATGTTCTCCA+AGG - chr3_1:81857881-81857900 None:intergenic 40.0%
TTAAGACCAGATTTGTGCAC+GGG - chr3_1:81857912-81857931 None:intergenic 40.0%
TACTCCAAGATCACTGCTAT+TGG + chr3_1:81857932-81857951 Msa0380210:CDS 40.0%
! ATTCAATTTTGCCCGAAGCT+TGG + chr3_1:81857961-81857980 Msa0380210:CDS 40.0%
! TTCAATTTTGCCCGAAGCTT+GGG + chr3_1:81857962-81857981 Msa0380210:CDS 40.0%
TTCACCACGAAAATGTACCA+AGG - chr3_1:81858003-81858022 None:intergenic 40.0%
GCATGACAAGGTCCATATTA+GGG - chr3_1:81858173-81858192 None:intergenic 40.0%
AGCATGACAAGGTCCATATT+AGG - chr3_1:81858174-81858193 None:intergenic 40.0%
TAATATGGACCTTGTCATGC+TGG + chr3_1:81858173-81858192 Msa0380210:intron 40.0%
CCTCCATAGGAAACTCAAAA+TGG - chr3_1:81858232-81858251 None:intergenic 40.0%
!!! CCATTTTGAGTTTCCTATGG+AGG + chr3_1:81858229-81858248 Msa0380210:intron 40.0%
! ATCAAAAAAGCCAGAGCACT+TGG - chr3_1:81858306-81858325 None:intergenic 40.0%
!!! CTCTGGCTTTTTTGATGCAT+GGG + chr3_1:81858310-81858329 Msa0380210:CDS 40.0%
!!! TCTGGCTTTTTTGATGCATG+GGG + chr3_1:81858311-81858330 Msa0380210:CDS 40.0%
AGACTCTTCGTCTTCAATCA+TGG + chr3_1:81858364-81858383 Msa0380210:CDS 40.0%
GACTCTTCGTCTTCAATCAT+GGG + chr3_1:81858365-81858384 Msa0380210:CDS 40.0%
ATAGGTTTCATCTGGCAGAA+GGG + chr3_1:81858400-81858419 Msa0380210:CDS 40.0%
AATCTGCTATCAAGGTTTCG+CGG - chr3_1:81858470-81858489 None:intergenic 40.0%
!!! CTCCTGTTGATTCTGGATTT+TGG + chr3_1:81858517-81858536 Msa0380210:CDS 40.0%
CACCAAAATCCAGAATCAAC+AGG - chr3_1:81858522-81858541 None:intergenic 40.0%
!!! CTGTTGATTCTGGATTTTGG+TGG + chr3_1:81858520-81858539 Msa0380210:CDS 40.0%
CGTGCATACACAAAATCTAC+AGG + chr3_1:81858555-81858574 Msa0380210:CDS 40.0%
TCTGAGTTTATGCTTGTCAG+AGG + chr3_1:81858629-81858648 Msa0380210:CDS 40.0%
CTGAGTTTATGCTTGTCAGA+GGG + chr3_1:81858630-81858649 Msa0380210:CDS 40.0%
TGAGTTTATGCTTGTCAGAG+GGG + chr3_1:81858631-81858650 Msa0380210:CDS 40.0%
CCATCAGCACATAGTAAAGT+TGG - chr3_1:81858669-81858688 None:intergenic 40.0%
CCAACTTTACTATGTGCTGA+TGG + chr3_1:81858666-81858685 Msa0380210:CDS 40.0%
! ATCTGGCTTAAGCAATAGCA+TGG - chr3_1:81859091-81859110 None:intergenic 40.0%
TGCTGAAGGGAAAGAGTTTA+TGG + chr3_1:81859110-81859129 Msa0380210:CDS 40.0%
!!! TATGAGAAGCCACTTTTGGT+TGG + chr3_1:81859170-81859189 Msa0380210:CDS 40.0%
GCTTCAAATCCAACCAAAAG+TGG - chr3_1:81859182-81859201 None:intergenic 40.0%
TTCCCGATTCTTTACCAGAT+TGG + chr3_1:81859271-81859290 Msa0380210:CDS 40.0%
! ATAAAGTATCCGCCATGATG+AGG - chr3_1:81859312-81859331 None:intergenic 40.0%
!! CATCATGGCGGATACTTTAT+TGG + chr3_1:81859312-81859331 Msa0380210:CDS 40.0%
CTTTATTGGGAATGTGAGTC+CGG + chr3_1:81859326-81859345 Msa0380210:CDS 40.0%
AATTACCAAGGCAAAACCAG+CGG - chr3_1:81859365-81859384 None:intergenic 40.0%
! CATAGCAATTTTGTCCTGCT+TGG + chr3_1:81859386-81859405 Msa0380210:CDS 40.0%
TCACGGTGGGAAGAATTAAT+TGG + chr3_1:81859450-81859469 Msa0380210:CDS 40.0%
CACGGTGGGAAGAATTAATT+GGG + chr3_1:81859451-81859470 Msa0380210:CDS 40.0%
ACGGTGGGAAGAATTAATTG+GGG + chr3_1:81859452-81859471 Msa0380210:CDS 40.0%
GCTGGATAACAAACTTTGAC+AGG - chr3_1:81859483-81859502 None:intergenic 40.0%
!! CATTCATGATTTTCAAGGGC+TGG - chr3_1:81859501-81859520 None:intergenic 40.0%
CAGCCCTTGAAAATCATGAA+TGG + chr3_1:81859499-81859518 Msa0380210:CDS 40.0%
CCCTTGAAAATCATGAATGG+AGG + chr3_1:81859502-81859521 Msa0380210:CDS 40.0%
CATGAATGGAGGATCATAAC+AGG + chr3_1:81859513-81859532 Msa0380210:CDS 40.0%
ACTAGATGGAGTTACCACAA+TGG + chr3_1:81859552-81859571 Msa0380210:CDS 40.0%
CTAGATGGAGTTACCACAAT+GGG + chr3_1:81859553-81859572 Msa0380210:CDS 40.0%
TAGATGGAGTTACCACAATG+GGG + chr3_1:81859554-81859573 Msa0380210:CDS 40.0%
!! AATGGTAGCATAAGAGTACC+TGG - chr3_1:81859588-81859607 None:intergenic 40.0%
! TGTGTGTGTACGACTTTTGA+GGG + chr3_1:81859633-81859652 Msa0380210:intron 40.0%
TATTAGCCAGTCTCCAAACA+AGG + chr3_1:81859865-81859884 Msa0380210:intron 40.0%
ATTAGCCAGTCTCCAAACAA+GGG + chr3_1:81859866-81859885 Msa0380210:intron 40.0%
!! AAGGGCACGTTTTGCAATTT+GGG - chr3_1:81860043-81860062 None:intergenic 40.0%
! CCAGTTGTCTTTTAGCAATC+TGG - chr3_1:81860079-81860098 None:intergenic 40.0%
CCAGATTGCTAAAAGACAAC+TGG + chr3_1:81860076-81860095 Msa0380210:CDS 40.0%
ATTGCTAAAAGACAACTGGC+CGG + chr3_1:81860080-81860099 Msa0380210:CDS 40.0%
AACTGGCCGGAATATTATGA+CGG + chr3_1:81860093-81860112 Msa0380210:CDS 40.0%
GAACACATGGTCGATACATT+GGG + chr3_1:81860115-81860134 Msa0380210:CDS 40.0%
CAAATAACCAGCAATAGACC+AGG - chr3_1:81860163-81860182 None:intergenic 40.0%
! CTGGTCTATTGCTGGTTATT+TGG + chr3_1:81860161-81860180 Msa0380210:CDS 40.0%
! GTCTATTGCTGGTTATTTGG+TGG + chr3_1:81860164-81860183 Msa0380210:CDS 40.0%
GAATTTGATCTCTTGAGCAC+AGG - chr3_1:81860261-81860280 None:intergenic 40.0%
ATACGCAAACACTAGACATG+TGG - chr3_1:81860412-81860431 None:intergenic 40.0%
ACTTATGAGCATTCCACTGA+AGG - chr3_1:81860436-81860455 None:intergenic 40.0%
! CTGTGTTCTGTAGAGTTTTC+AGG + chr3_1:81860463-81860482 Msa0380210:three_prime_UTR 40.0%
!! AGAGTTTTCAGGATCGTCAA+TGG + chr3_1:81860474-81860493 Msa0380210:three_prime_UTR 40.0%
TATGCACAAGGTGAAACCAA+TGG + chr3_1:81860508-81860527 Msa0380210:three_prime_UTR 40.0%
GAAACCAATGGTTCGTTATC+AGG + chr3_1:81860520-81860539 Msa0380210:three_prime_UTR 40.0%
! TGTTCCTGATAACGAACCAT+TGG - chr3_1:81860527-81860546 None:intergenic 40.0%
TAGCTTCACATTTCGTGATG+TGG - chr3_1:81860662-81860681 None:intergenic 40.0%
TCCTCAAAATCCTGCAGACA+GGG - chr3_1:81857586-81857605 None:intergenic 45.0%
AGGCTTATCTCCACGTCTAT+TGG + chr3_1:81857830-81857849 Msa0380210:CDS 45.0%
!!! AGTTTTGAGGCCAATAGACG+TGG - chr3_1:81857843-81857862 None:intergenic 45.0%
AGATTTGTGCACGGGAGAAA+AGG - chr3_1:81857904-81857923 None:intergenic 45.0%
! TTTTCTCCCGTGCACAAATC+TGG + chr3_1:81857903-81857922 Msa0380210:CDS 45.0%
GAGTCCAATAGCAGTGATCT+TGG - chr3_1:81857939-81857958 None:intergenic 45.0%
! CGTTCCTTGGTACATTTTCG+TGG + chr3_1:81857996-81858015 Msa0380210:CDS 45.0%
! CATTTTCGTGGTGAACCAGT+TGG + chr3_1:81858008-81858027 Msa0380210:CDS 45.0%
AAGGCAGCAATTGTTCCAAC+TGG - chr3_1:81858026-81858045 None:intergenic 45.0%
AGTTGGAACAATTGCTGCCT+TGG + chr3_1:81858025-81858044 Msa0380210:CDS 45.0%
TTTCCTATGGAGGCCTGATA+TGG + chr3_1:81858239-81858258 Msa0380210:intron 45.0%
TTCCTATGGAGGCCTGATAT+GGG + chr3_1:81858240-81858259 Msa0380210:intron 45.0%
GGGGAATTATACTTGTGCCT+AGG + chr3_1:81858260-81858279 Msa0380210:intron 45.0%
AGACTTTGTTCCAAGTGCTC+TGG + chr3_1:81858293-81858312 Msa0380210:CDS 45.0%
!!! GCTCTGGCTTTTTTGATGCA+TGG + chr3_1:81858309-81858328 Msa0380210:CDS 45.0%
GATAGGTTTCATCTGGCAGA+AGG + chr3_1:81858399-81858418 Msa0380210:CDS 45.0%
TAGGTTTCATCTGGCAGAAG+GGG + chr3_1:81858401-81858420 Msa0380210:CDS 45.0%
!!! GGTGATGCCTGCTAGTTTTA+AGG + chr3_1:81858422-81858441 Msa0380210:CDS 45.0%
! TTGGTGAAAGTGCAATAGGC+AGG + chr3_1:81858490-81858509 Msa0380210:CDS 45.0%
! TGGTGAAAGTGCAATAGGCA+GGG + chr3_1:81858491-81858510 Msa0380210:CDS 45.0%
TGACCAGCCTGAATGTCAAA+AGG + chr3_1:81858593-81858612 Msa0380210:CDS 45.0%
GACCAGCCTGAATGTCAAAA+GGG + chr3_1:81858594-81858613 Msa0380210:CDS 45.0%
! TACCCTTTTGACATTCAGGC+TGG - chr3_1:81858599-81858618 None:intergenic 45.0%
! CGCATACCCTTTTGACATTC+AGG - chr3_1:81858603-81858622 None:intergenic 45.0%
TTGCTTAAGCCAGATGCTGA+AGG + chr3_1:81859096-81859115 Msa0380210:CDS 45.0%
TGCTTAAGCCAGATGCTGAA+GGG + chr3_1:81859097-81859116 Msa0380210:CDS 45.0%
AACTCTTTCCCTTCAGCATC+TGG - chr3_1:81859108-81859127 None:intergenic 45.0%
GATTTCATGCCTCATCATGG+CGG + chr3_1:81859300-81859319 Msa0380210:CDS 45.0%
TGGATCTCATAGAATCACGG+TGG + chr3_1:81859436-81859455 Msa0380210:CDS 45.0%
GGATCTCATAGAATCACGGT+GGG + chr3_1:81859437-81859456 Msa0380210:CDS 45.0%
AGATGGAGTTACCACAATGG+GGG + chr3_1:81859555-81859574 Msa0380210:CDS 45.0%
! GTGTGTGTGTACGACTTTTG+AGG + chr3_1:81859632-81859651 Msa0380210:intron 45.0%
GACTAAATCACGATGACACG+TGG - chr3_1:81859809-81859828 None:intergenic 45.0%
GCATTAGCATAGCCCTTGTT+TGG - chr3_1:81859881-81859900 None:intergenic 45.0%
! GTTATGGTTTTTGTCTGCGG+CGG + chr3_1:81859999-81860018 Msa0380210:CDS 45.0%
! AGGGCACGTTTTGCAATTTG+GGG - chr3_1:81860042-81860061 None:intergenic 45.0%
!! GAAGGGCACGTTTTGCAATT+TGG - chr3_1:81860044-81860063 None:intergenic 45.0%
TCTGGCCTCAGCAATTTGAA+GGG - chr3_1:81860061-81860080 None:intergenic 45.0%
ATCTGGCCTCAGCAATTTGA+AGG - chr3_1:81860062-81860081 None:intergenic 45.0%
GGAACACATGGTCGATACAT+TGG + chr3_1:81860114-81860133 Msa0380210:CDS 45.0%
AACCAGCAATAGACCAGGTT+TGG - chr3_1:81860158-81860177 None:intergenic 45.0%
! TTGCTGGTTATTTGGTGGCT+AGG + chr3_1:81860169-81860188 Msa0380210:CDS 45.0%
TGAAGAAGACCGACAGCTAA+AGG + chr3_1:81860233-81860252 Msa0380210:CDS 45.0%
GTAGTGAGTGGAAGAATGTG+TGG + chr3_1:81860354-81860373 Msa0380210:three_prime_UTR 45.0%
GTGTTTGCGTATTCCTTCAG+TGG + chr3_1:81860420-81860439 Msa0380210:three_prime_UTR 45.0%
!!! TTTTTTTTTTATTCTTTTAA+TGG + chr3_1:81858126-81858145 Msa0380210:intron 5.0%
! CGTCGTGATGGAAATGCGAA+GGG - chr3_1:81856789-81856808 None:intergenic 50.0%
! ACGTCGTGATGGAAATGCGA+AGG - chr3_1:81856790-81856809 None:intergenic 50.0%
! ACCCTGTCTGCAGGATTTTG+AGG + chr3_1:81857582-81857601 Msa0380210:intron 50.0%
GTCCTCAAAATCCTGCAGAC+AGG - chr3_1:81857587-81857606 None:intergenic 50.0%
CCAATCTATTGGAGGGGTAG+AGG - chr3_1:81857649-81857668 None:intergenic 50.0%
CCTCTACCCCTCCAATAGAT+TGG + chr3_1:81857646-81857665 Msa0380210:CDS 50.0%
CAAGATGTTCTCCAAGGCGA+GGG - chr3_1:81857875-81857894 None:intergenic 50.0%
TCAAGATGTTCTCCAAGGCG+AGG - chr3_1:81857876-81857895 None:intergenic 50.0%
ACCTTGTCATGCTGGATCAG+TGG + chr3_1:81858181-81858200 Msa0380210:intron 50.0%
ACCACTGATCCAGCATGACA+AGG - chr3_1:81858185-81858204 None:intergenic 50.0%
TCCTATGGAGGCCTGATATG+GGG + chr3_1:81858241-81858260 Msa0380210:intron 50.0%
AAGGTTTCGCGGTTTCTGAC+CGG - chr3_1:81858459-81858478 None:intergenic 50.0%
!! AGGGTTGCTCCTGTTGATTC+TGG + chr3_1:81858510-81858529 Msa0380210:CDS 50.0%
!! TGCTACTACTAGGCACTGAC+AGG + chr3_1:81858931-81858950 Msa0380210:intron 50.0%
!! GCTACTACTAGGCACTGACA+GGG + chr3_1:81858932-81858951 Msa0380210:intron 50.0%
!! CTACTACTAGGCACTGACAG+GGG + chr3_1:81858933-81858952 Msa0380210:intron 50.0%
!!! GATTTCCGCTGGTTTTGCCT+TGG + chr3_1:81859357-81859376 Msa0380210:CDS 50.0%
GTTACCACAATGGGGGATCT+TGG + chr3_1:81859562-81859581 Msa0380210:CDS 50.0%
! CATAGCCCTTGTTTGGAGAC+TGG - chr3_1:81859874-81859893 None:intergenic 50.0%
ACGTGCCCTTCAAATTGCTG+AGG + chr3_1:81860053-81860072 Msa0380210:CDS 50.0%
TGGTCGATACATTGGGAAGC+AGG + chr3_1:81860122-81860141 Msa0380210:CDS 50.0%
AGGCTCGAAAATGCCAAACC+TGG + chr3_1:81860142-81860161 Msa0380210:CDS 50.0%
TGCCAAACCTGGTCTATTGC+TGG + chr3_1:81860153-81860172 Msa0380210:CDS 50.0%
GCACAGGATCCTTTAGCTGT+CGG - chr3_1:81860245-81860264 None:intergenic 50.0%
CAGGAACAGCTTGCAGTTCT+TGG + chr3_1:81860539-81860558 Msa0380210:three_prime_UTR 50.0%
GAACAGCTTGCAGTTCTTGG+TGG + chr3_1:81860542-81860561 Msa0380210:three_prime_UTR 50.0%
CTTGACAACTTCCCTCGCCT+TGG + chr3_1:81857861-81857880 Msa0380210:CDS 55.0%
CTGAGAGCTTCCCAAGCTTC+GGG - chr3_1:81857975-81857994 None:intergenic 55.0%
CCTGAGAGCTTCCCAAGCTT+CGG - chr3_1:81857976-81857995 None:intergenic 55.0%
TCCCCATATCAGGCCTCCAT+AGG - chr3_1:81858245-81858264 None:intergenic 55.0%
TTGGGAATGTGAGTCCGGCT+AGG + chr3_1:81859331-81859350 Msa0380210:CDS 55.0%
GAATGTGAGTCCGGCTAGGA+TGG + chr3_1:81859335-81859354 Msa0380210:CDS 55.0%
CAGCGGAAATCCATCCTAGC+CGG - chr3_1:81859348-81859367 None:intergenic 55.0%
CTGTTCAGGAGTTGCCAAGC+AGG - chr3_1:81859403-81859422 None:intergenic 55.0%
! GCTTGCAGTTCTTGGTGGAC+TGG + chr3_1:81860547-81860566 Msa0380210:three_prime_UTR 55.0%
CCGAAGCTTGGGAAGCTCTC+AGG + chr3_1:81857973-81857992 Msa0380210:CDS 60.0%
GGAAGCTCTCAGGCGTTCCT+TGG + chr3_1:81857983-81858002 Msa0380210:CDS 60.0%
CGCGGTTTCTGACCGGATCA+TGG - chr3_1:81858452-81858471 None:intergenic 60.0%
! CGGCTAGGATGGATTTCCGC+TGG + chr3_1:81859346-81859365 Msa0380210:CDS 60.0%
CTGGCCAAGATCCCCCATTG+TGG - chr3_1:81859569-81859588 None:intergenic 60.0%
CACAATGGGGGATCTTGGCC+AGG + chr3_1:81859567-81859586 Msa0380210:CDS 60.0%
TCTGCGGCGGCTATCAAGAC+TGG + chr3_1:81860012-81860031 Msa0380210:CDS 60.0%
CTGCGGCGGCTATCAAGACT+GGG + chr3_1:81860013-81860032 Msa0380210:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81856622 81860849 81856622 ID=Msa0380210;Name=Msa0380210
chr3_1 mRNA 81856622 81860849 81856622 ID=Msa0380210-mRNA-1;Parent=Msa0380210;Name=Msa0380210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=129|1|1|1|0.75|0.6|5|556|576
chr3_1 exon 81856622 81856706 81856622 ID=Msa0380210-mRNA-1:exon:20799;Parent=Msa0380210-mRNA-1
chr3_1 exon 81857595 81858079 81857595 ID=Msa0380210-mRNA-1:exon:20800;Parent=Msa0380210-mRNA-1
chr3_1 exon 81858282 81858713 81858282 ID=Msa0380210-mRNA-1:exon:20801;Parent=Msa0380210-mRNA-1
chr3_1 exon 81859030 81859588 81859030 ID=Msa0380210-mRNA-1:exon:20802;Parent=Msa0380210-mRNA-1
chr3_1 exon 81859995 81860849 81859995 ID=Msa0380210-mRNA-1:exon:20803;Parent=Msa0380210-mRNA-1
chr3_1 five_prime_UTR 81856622 81856706 81856622 ID=Msa0380210-mRNA-1:five_prime_utr;Parent=Msa0380210-mRNA-1
chr3_1 five_prime_UTR 81857595 81857638 81857595 ID=Msa0380210-mRNA-1:five_prime_utr;Parent=Msa0380210-mRNA-1
chr3_1 CDS 81857639 81858079 81857639 ID=Msa0380210-mRNA-1:cds;Parent=Msa0380210-mRNA-1
chr3_1 CDS 81858282 81858713 81858282 ID=Msa0380210-mRNA-1:cds;Parent=Msa0380210-mRNA-1
chr3_1 CDS 81859030 81859588 81859030 ID=Msa0380210-mRNA-1:cds;Parent=Msa0380210-mRNA-1
chr3_1 CDS 81859995 81860293 81859995 ID=Msa0380210-mRNA-1:cds;Parent=Msa0380210-mRNA-1
chr3_1 three_prime_UTR 81860294 81860849 81860294 ID=Msa0380210-mRNA-1:three_prime_utr;Parent=Msa0380210-mRNA-1
Gene Sequence

>Msa0380210

ATGTCTACCTCTACCCCTCCAATAGATTGGTCTCATCACAATGGTAATGGAAATTTGAAAAGTCAAGACTCGCTATGTAGTGTCGCAGAATTTGAGGAATTTGATTTCTCTAAAGTATTAGATAAGCCAAGGACTTTGAACATTGAGAGACAAAGATCATGTGATGAAAGATCAATGAGTGAACTATCAATAGGCTTATCTCCACGTCTATTGGCCTCAAAACTTGACAACTTCCCTCGCCTTGGAGAACATCTTGATCATGCCTTTTCTCCCGTGCACAAATCTGGTCTTAATACTCCAAGATCACTGCTATTGGACTCTCATTCAATTTTGCCCGAAGCTTGGGAAGCTCTCAGGCGTTCCTTGGTACATTTTCGTGGTGAACCAGTTGGAACAATTGCTGCCTTGGACAATTCTGATGAGAATCTTAATTATGATCAGGTTTTTGTTAGAGACTTTGTTCCAAGTGCTCTGGCTTTTTTGATGCATGGGGAACCAGACATTGTTAAGAATTTTCTCTTGAAGACTCTTCGTCTTCAATCATGGGAAAAAAAGATTGATAGGTTTCATCTGGCAGAAGGGGTGATGCCTGCTAGTTTTAAGGTATTCCATGATCCGGTCAGAAACCGCGAAACCTTGATAGCAGATTTTGGTGAAAGTGCAATAGGCAGGGTTGCTCCTGTTGATTCTGGATTTTGGTGGATCATATTGCTTCGTGCATACACAAAATCTACAGGAGACTCTTCTTTAGCTGACCAGCCTGAATGTCAAAAGGGTATGCGTTTGATTCTGAGTTTATGCTTGTCAGAGGGGTTTGATACATTTCCAACTTTACTATGTGCTGATGGGTGCTGTATGATTGATCGTAGAATGGGTGTTTATGGCTATCCAATTGAAATTCAAGCATTGTTCTTCATGGCTTTAAGATGTGCCATGCTATTGCTTAAGCCAGATGCTGAAGGGAAAGAGTTTATGGAACGAATTGCGAAACGCTTGCATGCCTTAAGCTATCATATGAGAAGCCACTTTTGGTTGGATTTGAAGCAACTTAATGATATATATCGATTCAAAACAGAAGAGTATTCACATACTGCTGTGAACAAGTTTAATGTCATTCCCGATTCTTTACCAGATTGGATTTTTGATTTCATGCCTCATCATGGCGGATACTTTATTGGGAATGTGAGTCCGGCTAGGATGGATTTCCGCTGGTTTTGCCTTGGTAATTGCATAGCAATTTTGTCCTGCTTGGCAACTCCTGAACAGTCAGTTGCAATTATGGATCTCATAGAATCACGGTGGGAAGAATTAATTGGGGAGATGCCTGTCAAAGTTTGTTATCCAGCCCTTGAAAATCATGAATGGAGGATCATAACAGGATGTGACCCAAAAAATACTAGATGGAGTTACCACAATGGGGGATCTTGGCCAGTTATGTTATGGTTTTTGTCTGCGGCGGCTATCAAGACTGGGCGACCCCAAATTGCAAAACGTGCCCTTCAAATTGCTGAGGCCAGATTGCTAAAAGACAACTGGCCGGAATATTATGACGGAACACATGGTCGATACATTGGGAAGCAGGCTCGAAAATGCCAAACCTGGTCTATTGCTGGTTATTTGGTGGCTAGGATGATGCTTGATGATCCTTCACATTTAGGTATTATAGCACTTGAAGAAGACCGACAGCTAAAGGATCCTGTGCTCAAGAGATCAAATTCATGGACTTTGTGA
Protein sequence

>Msa0380210

MSTSTPPIDWSHHNGNGNLKSQDSLCSVAEFEEFDFSKVLDKPRTLNIERQRSCDERSMSELSIGLSPRLLASKLDNFPRLGEHLDHAFSPVHKSGLNTPRSLLLDSHSILPEAWEALRRSLVHFRGEPVGTIAALDNSDENLNYDQVFVRDFVPSALAFLMHGEPDIVKNFLLKTLRLQSWEKKIDRFHLAEGVMPASFKVFHDPVRNRETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLADQPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCAMLLLKPDAEGKEFMERIAKRLHALSYHMRSHFWLDLKQLNDIYRFKTEEYSHTAVNKFNVIPDSLPDWIFDFMPHHGGYFIGNVSPARMDFRWFCLGNCIAILSCLATPEQSVAIMDLIESRWEELIGEMPVKVCYPALENHEWRIITGCDPKNTRWSYHNGGSWPVMLWFLSAAAIKTGRPQIAKRALQIAEARLLKDNWPEYYDGTHGRYIGKQARKCQTWSIAGYLVARMMLDDPSHLGIIALEEDRQLKDPVLKRSNSWTL*