AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365060 MtrunA17_Chr3g0145461 99.302 573 4 0 4 576 2 574 0.0 1186
Msa1365060 MtrunA17_Chr1g0200341 73.545 567 131 7 14 575 2 554 0.0 876
Msa1365060 MtrunA17_Chr1g0200331 68.959 567 143 6 11 575 17 552 0.0 811
Msa1365060 MtrunA17_Chr4g0038561 78.178 472 102 1 102 573 40 510 0.0 785
Msa1365060 MtrunA17_Chr8g0383361 55.354 495 215 2 80 568 132 626 0.0 585
Msa1365060 MtrunA17_Chr7g0271621 57.269 454 191 1 113 563 166 619 0.0 567
Msa1365060 MtrunA17_Chr4g0068901 56.522 460 194 2 110 563 181 640 0.0 566
Msa1365060 MtrunA17_Chr1g0192991 56.455 457 195 2 113 565 113 569 0.0 558
Msa1365060 MtrunA17_Chr3g0082721 53.939 165 76 0 302 466 2 166 2.80e-65 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365060 AT4G34860.2 79.292 565 109 5 14 575 11 570 0.0 941
Msa1365060 AT4G34860.1 79.292 565 109 5 14 575 11 570 0.0 941
Msa1365060 AT4G34860.3 79.292 565 109 5 14 575 11 570 0.0 941
Msa1365060 AT4G09510.1 73.571 560 132 4 19 575 11 557 0.0 876
Msa1365060 AT1G22650.1 72.906 561 121 7 19 575 1 534 0.0 846
Msa1365060 AT1G35580.2 71.301 561 140 5 18 574 5 548 0.0 838
Msa1365060 AT1G35580.1 71.301 561 140 5 18 574 5 548 0.0 838
Msa1365060 AT1G72000.1 77.126 494 108 3 86 575 7 499 0.0 814
Msa1365060 AT4G09510.2 73.810 462 106 3 19 477 11 460 0.0 725
Msa1365060 AT1G35580.3 71.002 469 116 4 18 482 5 457 0.0 696
Msa1365060 AT1G22650.2 71.277 470 105 6 19 484 1 444 0.0 689
Msa1365060 AT5G22510.2 51.337 561 240 5 11 565 59 592 0.0 587
Msa1365060 AT5G22510.1 51.337 561 240 5 11 565 59 592 0.0 587
Msa1365060 AT1G56560.1 51.908 524 234 5 59 565 68 590 0.0 574
Msa1365060 AT3G06500.1 53.170 489 220 3 81 563 153 638 0.0 551
Msa1365060 AT3G05820.2 55.142 457 199 3 113 563 150 606 0.0 545
Msa1365060 AT3G06500.2 54.082 392 175 1 177 563 48 439 7.30e-161 468
Msa1365060 AT3G05820.1 56.111 360 152 3 113 466 150 509 1.73e-146 432

Find 155 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGTTGATTCTGGATTT+TGG 0.107168 tig0018197:+119633 Msa1365060:CDS
CTTGATGATCCTTCACATTT+AGG 0.135844 tig0018197:+121318 Msa1365060:CDS
TTATGATTTCAGGGTGTTTA+TGG 0.137912 tig0018197:+120134 Msa1365060:intron
CATCATGGCGGATACTTTAT+TGG 0.172811 tig0018197:+120428 Msa1365060:CDS
CTCATTTCATTCATATAAAA+AGG 0.185980 tig0018197:-121828 None:intergenic
CAACTAAAGTATATATTAAA+AGG 0.216045 tig0018197:-121929 None:intergenic
CTGGTCTATTGCTGGTTATT+TGG 0.241651 tig0018197:+121281 Msa1365060:CDS
TGAACAGTCAGTTGCAATTA+TGG 0.252442 tig0018197:+120532 Msa1365060:CDS
TTTGACTTGCAATGATAAAA+AGG 0.254816 tig0018197:+121437 Msa1365060:three_prime_UTR
GAAACCTTGATAGCAGATTT+TGG 0.254882 tig0018197:+119587 Msa1365060:CDS
TGCTGAAGGGAAAGAGTTTA+TGG 0.259291 tig0018197:+120226 Msa1365060:CDS
CAGGAACAGCTTGCAGTTCT+TGG 0.261482 tig0018197:+121659 Msa1365060:three_prime_UTR
TCACGGTGGGAAGAATTAAT+TGG 0.263132 tig0018197:+120566 Msa1365060:CDS
TCATATCAAATCCCAATAAA+AGG 0.283068 tig0018197:-121881 None:intergenic
AGGGTTGCTCCTGTTGATTC+TGG 0.284587 tig0018197:+119626 Msa1365060:CDS
AATTCAAGCATTGTTCTTCA+TGG 0.292043 tig0018197:+120169 Msa1365060:CDS
CCAATAAAAGGTAAAATAGA+AGG 0.314414 tig0018197:-121869 None:intergenic
AACTCTTTCCCTTCAGCATC+TGG 0.317968 tig0018197:-120221 None:intergenic
CTCTCAATGTTCAAAGTCCT+TGG 0.321428 tig0018197:-118881 None:intergenic
ATCATATGAGAAGCCACTTT+TGG 0.334217 tig0018197:+120282 Msa1365060:CDS
ATCATGGCGGATACTTTATT+GGG 0.335197 tig0018197:+120429 Msa1365060:CDS
GAAACCAATGGTTCGTTATC+AGG 0.336858 tig0018197:+121640 Msa1365060:three_prime_UTR
AACAATGCTTGAATTTCAAT+TGG 0.347066 tig0018197:-120161 None:intergenic
AGAAAATTCTTAACAATGTC+TGG 0.354613 tig0018197:-119452 None:intergenic
TGGTGGTTACAGTTATGTTA+TGG 0.354882 tig0018197:+121103 Msa1365060:intron
TTACAATTAGATTGAAATTA+CGG 0.355244 tig0018197:+121716 Msa1365060:three_prime_UTR
TACTCCAAGATCACTGCTAT+TGG 0.358290 tig0018197:+119048 Msa1365060:CDS
CCTGAGAGCTTCCCAAGCTT+CGG 0.362174 tig0018197:-119089 None:intergenic
TTCCCGATTCTTTACCAGAT+TGG 0.363867 tig0018197:+120387 Msa1365060:CDS
TGCTCAAGAGATCAAATTCA+TGG 0.367029 tig0018197:+121382 Msa1365060:CDS
TCTGCGGCGGCTATCAAGAC+TGG 0.369898 tig0018197:+121132 Msa1365060:CDS
CTGAGAGCTTCCCAAGCTTC+GGG 0.371080 tig0018197:-119088 None:intergenic
CGCGGTTTCTGACCGGATCA+TGG 0.375080 tig0018197:-119565 None:intergenic
ACCTCACAGCAAGAAAAGTA+TGG 0.385720 tig0018197:-117800 None:intergenic
CACGGTGGGAAGAATTAATT+GGG 0.386404 tig0018197:+120567 Msa1365060:CDS
TGCCAAACCTGGTCTATTGC+TGG 0.394176 tig0018197:+121273 Msa1365060:CDS
TTCACCAAAATCTGCTATCA+AGG 0.396923 tig0018197:-119591 None:intergenic
AAAGATTGATAGGTTTCATC+TGG 0.409232 tig0018197:+119508 Msa1365060:CDS
AGGCTTATCTCCACGTCTAT+TGG 0.412169 tig0018197:+118946 Msa1365060:CDS
CCGAAGCTTGGGAAGCTCTC+AGG 0.414554 tig0018197:+119089 Msa1365060:CDS
AGTTGGAACAATTGCTGCCT+TGG 0.417688 tig0018197:+119141 Msa1365060:CDS
TGTGTTCCGTCATAATATTC+CGG 0.421532 tig0018197:-121219 None:intergenic
CATGAATGGAGGATCATAAC+AGG 0.421806 tig0018197:+120629 Msa1365060:CDS
AATCCAATCTGGTAAAGAAT+CGG 0.424424 tig0018197:-120390 None:intergenic
CTAGATGGAGTTACCACAAT+GGG 0.425352 tig0018197:+120669 Msa1365060:CDS
AGACTCTTCGTCTTCAATCA+TGG 0.427851 tig0018197:+119480 Msa1365060:CDS
AACCAGCAATAGACCAGGTT+TGG 0.430273 tig0018197:-121275 None:intergenic
AGACTTTGTTCCAAGTGCTC+TGG 0.430586 tig0018197:+119409 Msa1365060:CDS
TCAATGAGTGAACTATCAAT+AGG 0.444042 tig0018197:+118926 Msa1365060:CDS
TTGCTGGTTATTTGGTGGCT+AGG 0.446100 tig0018197:+121289 Msa1365060:CDS
GGAAGCTCTCAGGCGTTCCT+TGG 0.449024 tig0018197:+119099 Msa1365060:CDS
AAGGCAGCAATTGTTCCAAC+TGG 0.455491 tig0018197:-119139 None:intergenic
ATCTGGCCTCAGCAATTTGA+AGG 0.457938 tig0018197:-121179 None:intergenic
CCAACTTTACTATGTGCTGA+TGG 0.459852 tig0018197:+119782 Msa1365060:CDS
TTGTGATGAGACCAATCTAT+TGG 0.463367 tig0018197:-118773 None:intergenic
GTCTATTGCTGGTTATTTGG+TGG 0.465320 tig0018197:+121284 Msa1365060:CDS
ATGTAGTGTCGCAGAATTTG+AGG 0.466289 tig0018197:+118829 Msa1365060:CDS
TGCAAGTGCTAAGATATTGC+TGG 0.469257 tig0018197:+118729 Msa1365060:five_prime_UTR
TGGTCTCATCACAATGGTAA+TGG 0.469382 tig0018197:+118782 Msa1365060:CDS
CTTGACAACTTCCCTCGCCT+TGG 0.469584 tig0018197:+118977 Msa1365060:CDS
AGATTTGTGCACGGGAGAAA+AGG 0.470250 tig0018197:-119017 None:intergenic
CCATCAGCACATAGTAAAGT+TGG 0.473576 tig0018197:-119782 None:intergenic
TTGGTGAAAGTGCAATAGGC+AGG 0.474019 tig0018197:+119606 Msa1365060:CDS
CTTTATTGGGAATGTGAGTC+CGG 0.474021 tig0018197:+120442 Msa1365060:CDS
TGACCAGCCTGAATGTCAAA+AGG 0.475180 tig0018197:+119709 Msa1365060:CDS
CCAATCTATTGGAGGGGTAG+AGG 0.476513 tig0018197:-118762 None:intergenic
GAGTCCAATAGCAGTGATCT+TGG 0.477827 tig0018197:-119052 None:intergenic
CACCAAAATCCAGAATCAAC+AGG 0.478739 tig0018197:-119635 None:intergenic
CTGAGTTTATGCTTGTCAGA+GGG 0.479869 tig0018197:+119746 Msa1365060:CDS
GGAACACATGGTCGATACAT+TGG 0.481896 tig0018197:+121234 Msa1365060:CDS
AAGGTTTCGCGGTTTCTGAC+CGG 0.483631 tig0018197:-119572 None:intergenic
ATCCAATCTGGTAAAGAATC+GGG 0.484985 tig0018197:-120389 None:intergenic
GCTTCAAATCCAACCAAAAG+TGG 0.485151 tig0018197:-120295 None:intergenic
GAACAGCTTGCAGTTCTTGG+TGG 0.485168 tig0018197:+121662 Msa1365060:three_prime_UTR
TGGTCGATACATTGGGAAGC+AGG 0.486411 tig0018197:+121242 Msa1365060:CDS
GACTCTTCGTCTTCAATCAT+GGG 0.486513 tig0018197:+119481 Msa1365060:CDS
CTGTTCAGGAGTTGCCAAGC+AGG 0.494417 tig0018197:-120516 None:intergenic
CCAGATTGCTAAAAGACAAC+TGG 0.494499 tig0018197:+121196 Msa1365060:CDS
GCTTCTCATATGATAGCTTA+AGG 0.495719 tig0018197:-120273 None:intergenic
CAACTTTACTATGTGCTGAT+GGG 0.495887 tig0018197:+119783 Msa1365060:CDS
GAACACATGGTCGATACATT+GGG 0.500723 tig0018197:+121235 Msa1365060:CDS
TGAAGAAGACCGACAGCTAA+AGG 0.501224 tig0018197:+121353 Msa1365060:CDS
GTGTTTGCGTATTCCTTCAG+TGG 0.502240 tig0018197:+121540 Msa1365060:three_prime_UTR
CGGCTAGGATGGATTTCCGC+TGG 0.506123 tig0018197:+120462 Msa1365060:CDS
ATAATTGCAACTGACTGTTC+AGG 0.506227 tig0018197:-120530 None:intergenic
CCTCTACCCCTCCAATAGAT+TGG 0.506254 tig0018197:+118762 Msa1365060:CDS
GCTTGCAGTTCTTGGTGGAC+TGG 0.508414 tig0018197:+121667 Msa1365060:three_prime_UTR
TGAGAATCTTAATTATGATC+AGG 0.512681 tig0018197:+119174 Msa1365060:CDS
TGTTCCTGATAACGAACCAT+TGG 0.515177 tig0018197:-121644 None:intergenic
GAATTTGATCTCTTGAGCAC+AGG 0.520613 tig0018197:-121378 None:intergenic
TGGAATACCTTAAAACTAGC+AGG 0.523302 tig0018197:-119545 None:intergenic
GAATGTGAGTCCGGCTAGGA+TGG 0.524824 tig0018197:+120451 Msa1365060:CDS
GAATATTATGACGGAACACA+TGG 0.527626 tig0018197:+121222 Msa1365060:CDS
TTTGATTTCATGCCTCATCA+TGG 0.529497 tig0018197:+120413 Msa1365060:CDS
CAGCCCTTGAAAATCATGAA+TGG 0.529947 tig0018197:+120615 Msa1365060:CDS
TAGCTTCACATTTCGTGATG+TGG 0.535028 tig0018197:-121779 None:intergenic
CTGCGGCGGCTATCAAGACT+GGG 0.535342 tig0018197:+121133 Msa1365060:CDS
GAAGTAAGAAATGTAGTGAG+TGG 0.535916 tig0018197:+121462 Msa1365060:three_prime_UTR
TCTGAGTTTATGCTTGTCAG+AGG 0.536420 tig0018197:+119745 Msa1365060:CDS
CGTGCATACACAAAATCTAC+AGG 0.544504 tig0018197:+119671 Msa1365060:CDS
AGGCTCGAAAATGCCAAACC+TGG 0.550502 tig0018197:+121262 Msa1365060:CDS
GATAGGTTTCATCTGGCAGA+AGG 0.553855 tig0018197:+119515 Msa1365060:CDS
TTAAGACCAGATTTGTGCAC+GGG 0.557462 tig0018197:-119025 None:intergenic
GCTGGATAACAAACTTTGAC+AGG 0.557935 tig0018197:-120596 None:intergenic
GCACAGGATCCTTTAGCTGT+CGG 0.560516 tig0018197:-121362 None:intergenic
ACTTATGAGCATTCCACTGA+AGG 0.564041 tig0018197:-121553 None:intergenic
TTGCTTAAGCCAGATGCTGA+AGG 0.566251 tig0018197:+120212 Msa1365060:CDS
TTGGGAATGTGAGTCCGGCT+AGG 0.569278 tig0018197:+120447 Msa1365060:CDS
AATCTGCTATCAAGGTTTCG+CGG 0.570404 tig0018197:-119583 None:intergenic
GATGAGACCAATCTATTGGA+GGG 0.575783 tig0018197:-118769 None:intergenic
GACCAGCCTGAATGTCAAAA+GGG 0.576127 tig0018197:+119710 Msa1365060:CDS
TATGCACAAGGTGAAACCAA+TGG 0.579457 tig0018197:+121628 Msa1365060:three_prime_UTR
TGATGAGACCAATCTATTGG+AGG 0.580435 tig0018197:-118770 None:intergenic
TGAGTTTATGCTTGTCAGAG+GGG 0.580700 tig0018197:+119747 Msa1365060:CDS
ATCTGGCTTAAGCAATAGCA+TGG 0.582923 tig0018197:-120204 None:intergenic
CTGTATGATTGATCGTAGAA+TGG 0.588231 tig0018197:+119808 Msa1365060:CDS
ATAGGTTTCATCTGGCAGAA+GGG 0.588613 tig0018197:+119516 Msa1365060:CDS
CTAAAGTATTAGATAAGCCA+AGG 0.589167 tig0018197:+118864 Msa1365060:CDS
CAGCGGAAATCCATCCTAGC+CGG 0.590490 tig0018197:-120461 None:intergenic
GCTATAATACCTAAATGTGA+AGG 0.591073 tig0018197:-121327 None:intergenic
CAATAAAAGGTAAAATAGAA+GGG 0.591260 tig0018197:-121868 None:intergenic
TAGGTTTCATCTGGCAGAAG+GGG 0.591697 tig0018197:+119517 Msa1365060:CDS
TGCTTAAGCCAGATGCTGAA+GGG 0.597457 tig0018197:+120213 Msa1365060:CDS
CAAGATGTTCTCCAAGGCGA+GGG 0.604363 tig0018197:-118988 None:intergenic
CCCTTGAAAATCATGAATGG+AGG 0.605532 tig0018197:+120618 Msa1365060:CDS
ATAAAGTATCCGCCATGATG+AGG 0.605960 tig0018197:-120425 None:intergenic
TGGTGAAAGTGCAATAGGCA+GGG 0.613958 tig0018197:+119607 Msa1365060:CDS
TCAAGATGTTCTCCAAGGCG+AGG 0.629033 tig0018197:-118989 None:intergenic
ATTAAGACCAGATTTGTGCA+CGG 0.631492 tig0018197:-119026 None:intergenic
ATTGCAAGTCAAAATTGATG+AGG 0.632767 tig0018197:-121427 None:intergenic
GTAGTGAGTGGAAGAATGTG+TGG 0.637024 tig0018197:+121474 Msa1365060:three_prime_UTR
ATTGCTAAAAGACAACTGGC+CGG 0.640390 tig0018197:+121200 Msa1365060:CDS
ATACGCAAACACTAGACATG+TGG 0.642445 tig0018197:-121529 None:intergenic
AACTGGCCGGAATATTATGA+CGG 0.645214 tig0018197:+121213 Msa1365060:CDS
CAAATAACCAGCAATAGACC+AGG 0.645389 tig0018197:-121280 None:intergenic
GGATCTCATAGAATCACGGT+GGG 0.649862 tig0018197:+120553 Msa1365060:CDS
TAAAAGGTAAAATAGAAGGG+TGG 0.651885 tig0018197:-121865 None:intergenic
CATGATCAAGATGTTCTCCA+AGG 0.652753 tig0018197:-118994 None:intergenic
ATTCTCATCAGAATTGTCCA+AGG 0.653274 tig0018197:-119158 None:intergenic
TTATGGATCTCATAGAATCA+CGG 0.654471 tig0018197:+120549 Msa1365060:CDS
TCTGGCCTCAGCAATTTGAA+GGG 0.657188 tig0018197:-121178 None:intergenic
TGAAACAGAATGATTCATGA+CGG 0.658315 tig0018197:-121504 None:intergenic
ACGTGCCCTTCAAATTGCTG+AGG 0.658820 tig0018197:+121173 Msa1365060:CDS
GATTTCATGCCTCATCATGG+CGG 0.677929 tig0018197:+120416 Msa1365060:CDS
ACTAGATGGAGTTACCACAA+TGG 0.679491 tig0018197:+120668 Msa1365060:CDS
ATGAGACCAATCTATTGGAG+GGG 0.687920 tig0018197:-118768 None:intergenic
AAATTGCTATGCAATTACCA+AGG 0.691776 tig0018197:-120490 None:intergenic
ATAGATTGGTCTCATCACAA+TGG 0.702971 tig0018197:+118776 Msa1365060:CDS
TAGATGGAGTTACCACAATG+GGG 0.708965 tig0018197:+120670 Msa1365060:CDS
AATCACAATCACAATTCACG+AGG 0.714083 tig0018197:+117736 Msa1365060:five_prime_UTR
TGGATCTCATAGAATCACGG+TGG 0.714752 tig0018197:+120552 Msa1365060:CDS
AGATGGAGTTACCACAATGG+GGG 0.717268 tig0018197:+120671 Msa1365060:CDS
AATTACCAAGGCAAAACCAG+CGG 0.718732 tig0018197:-120478 None:intergenic
TTCACCACGAAAATGTACCA+AGG 0.730398 tig0018197:-119116 None:intergenic
ACGGTGGGAAGAATTAATTG+GGG 0.783541 tig0018197:+120568 Msa1365060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTATATATATAATTCT+AGG + tig0018197:118253-118272 Msa1365060:intron 10.0%
!! TTCTTATATATATAATTCTA+GGG + tig0018197:118254-118273 Msa1365060:intron 10.0%
!! ATAAATAAAAAATGAAGAAA+TGG - tig0018197:120111-120130 None:intergenic 10.0%
!! TATTTATAATTTATGATTTC+AGG + tig0018197:120124-120143 Msa1365060:intron 10.0%
!! ATTTATAATTTATGATTTCA+GGG + tig0018197:120125-120144 Msa1365060:intron 10.0%
!! AAAGAAAGATAATTAAATCT+GGG - tig0018197:118156-118175 None:intergenic 15.0%
!! AAAAGAAAGATAATTAAATC+TGG - tig0018197:118157-118176 None:intergenic 15.0%
!! TGATATAAATTTACAAAGTT+GGG - tig0018197:119916-119935 None:intergenic 15.0%
!! TTACAATTAGATTGAAATTA+CGG + tig0018197:121716-121735 Msa1365060:three_prime_UTR 15.0%
!! ATTCATATAAAAAGGATAAA+TGG - tig0018197:121823-121842 None:intergenic 15.0%
!! CAACTAAAGTATATATTAAA+AGG - tig0018197:121932-121951 None:intergenic 15.0%
!! CTATTCTATTCTATTCTATT+AGG - tig0018197:117857-117876 None:intergenic 20.0%
!!! AAATAATGTTGCAATGTTTT+CGG - tig0018197:118544-118563 None:intergenic 20.0%
!! ATGAAATTGTACGAAAAAAA+AGG - tig0018197:119216-119235 None:intergenic 20.0%
!! AATGGATGGAAAAATATAAA+AGG - tig0018197:119330-119349 None:intergenic 20.0%
!! GATATAAATTTACAAAGTTG+GGG - tig0018197:119915-119934 None:intergenic 20.0%
!! GTGATATAAATTTACAAAGT+TGG - tig0018197:119917-119936 None:intergenic 20.0%
!!! AAATTCTCTTCTTTTTTTTC+TGG - tig0018197:121023-121042 None:intergenic 20.0%
!!! TAGCATTTGCTTTTTTAATA+TGG + tig0018197:121068-121087 Msa1365060:intron 20.0%
!!! CTTTTTTAATATGGTGATAT+TGG + tig0018197:121077-121096 Msa1365060:intron 20.0%
!! CTCATTTCATTCATATAAAA+AGG - tig0018197:121831-121850 None:intergenic 20.0%
!! CAATAAAAGGTAAAATAGAA+GGG - tig0018197:121871-121890 None:intergenic 20.0%
!!! CTTCTATTTTACCTTTTATT+GGG + tig0018197:121870-121889 Msa1365060:three_prime_UTR 20.0%
!!! CGAAAGCATTATGTTAATTA+TGG - tig0018197:118021-118040 None:intergenic 25.0%
!! CTCAACATCATTTCAAATTT+TGG + tig0018197:118357-118376 Msa1365060:intron 25.0%
! TGAGAATCTTAATTATGATC+AGG + tig0018197:119174-119193 Msa1365060:CDS 25.0%
!! AATGGATTTGTACTTAACTT+TGG + tig0018197:119260-119279 Msa1365060:intron 25.0%
! AGAAAATTCTTAACAATGTC+TGG - tig0018197:119455-119474 None:intergenic 25.0%
!!! TTGAGTTTTGATTTTTACAC+AGG - tig0018197:119952-119971 None:intergenic 25.0%
!! ATTGTTATTCTCATTCACTT+TGG - tig0018197:120006-120025 None:intergenic 25.0%
! AACAATGCTTGAATTTCAAT+TGG - tig0018197:120164-120183 None:intergenic 25.0%
! ATGAAATCAAAAATCCAATC+TGG - tig0018197:120404-120423 None:intergenic 25.0%
!!! AACTCCATCTAGTATTTTTT+GGG - tig0018197:120661-120680 None:intergenic 25.0%
!!! TAACTCCATCTAGTATTTTT+TGG - tig0018197:120662-120681 None:intergenic 25.0%
! AAACTCTATCATTTCAAACT+AGG + tig0018197:120949-120968 Msa1365060:intron 25.0%
!! TAATATGGTGATATTGGTTA+TGG + tig0018197:121083-121102 Msa1365060:intron 25.0%
!!! TTTGACTTGCAATGATAAAA+AGG + tig0018197:121437-121456 Msa1365060:three_prime_UTR 25.0%
! CATATAAAAAGGATAAATGG+AGG - tig0018197:121820-121839 None:intergenic 25.0%
! CCAATAAAAGGTAAAATAGA+AGG - tig0018197:121872-121891 None:intergenic 25.0%
!! CCTTCTATTTTACCTTTTAT+TGG + tig0018197:121869-121888 Msa1365060:three_prime_UTR 25.0%
! TCATATCAAATCCCAATAAA+AGG - tig0018197:121884-121903 None:intergenic 25.0%
! TAATTCTAGGGATCTTGAAT+TGG + tig0018197:118266-118285 Msa1365060:intron 30.0%
! TCGTGTTCTTAATCATTTTG+TGG + tig0018197:118305-118324 Msa1365060:intron 30.0%
AATTAACCACTTCATTACCA+TGG + tig0018197:118454-118473 Msa1365060:intron 30.0%
! CTAAAGTATTAGATAAGCCA+AGG + tig0018197:118864-118883 Msa1365060:CDS 30.0%
TCAATGAGTGAACTATCAAT+AGG + tig0018197:118926-118945 Msa1365060:CDS 30.0%
CAAGTATAATTCCCCATATT+AGG - tig0018197:119371-119390 None:intergenic 30.0%
AAAGTCTCTAACAAAAACCT+AGG - tig0018197:119396-119415 None:intergenic 30.0%
CATGGGAAAAAAAGATTGAT+AGG + tig0018197:119498-119517 Msa1365060:CDS 30.0%
AAAGATTGATAGGTTTCATC+TGG + tig0018197:119508-119527 Msa1365060:CDS 30.0%
!!! TTTTAAGGTATTCCATGATC+CGG + tig0018197:119553-119572 Msa1365060:CDS 30.0%
TTTATTCATAATCTACTGCC+TGG + tig0018197:119845-119864 Msa1365060:intron 30.0%
!! ATCATCAATGCTTATTTTCC+AGG - tig0018197:119866-119885 None:intergenic 30.0%
!! GGAAAATAAGCATTGATGAT+AGG + tig0018197:119866-119885 Msa1365060:intron 30.0%
ATTCTAGATATGCTACTACT+AGG + tig0018197:120037-120056 Msa1365060:intron 30.0%
AAATGGATAGATTAACGACT+AGG - tig0018197:120094-120113 None:intergenic 30.0%
! TTATGATTTCAGGGTGTTTA+TGG + tig0018197:120134-120153 Msa1365060:intron 30.0%
! AATTCAAGCATTGTTCTTCA+TGG + tig0018197:120169-120188 Msa1365060:CDS 30.0%
AATCCAATCTGGTAAAGAAT+CGG - tig0018197:120393-120412 None:intergenic 30.0%
AAATTGCTATGCAATTACCA+AGG - tig0018197:120493-120512 None:intergenic 30.0%
TTATGGATCTCATAGAATCA+CGG + tig0018197:120549-120568 Msa1365060:CDS 30.0%
TCATCATTAAACAAATGCAG+TGG + tig0018197:120791-120810 Msa1365060:intron 30.0%
! TATGTTATGGTTTTTGTCTG+CGG + tig0018197:121116-121135 Msa1365060:CDS 30.0%
GCTATAATACCTAAATGTGA+AGG - tig0018197:121330-121349 None:intergenic 30.0%
ATTGCAAGTCAAAATTGATG+AGG - tig0018197:121430-121449 None:intergenic 30.0%
TGAAACAGAATGATTCATGA+CGG - tig0018197:121507-121526 None:intergenic 30.0%
!! GAAAAGTTGTTTTATGCACA+AGG + tig0018197:121616-121635 Msa1365060:three_prime_UTR 30.0%
! TAGATTGTGTTTTCTTGAAC+TGG + tig0018197:121751-121770 Msa1365060:three_prime_UTR 30.0%
TAAAAGGTAAAATAGAAGGG+TGG - tig0018197:121868-121887 None:intergenic 30.0%
!!! TCACTAGCATCTATTTTTTC+TGG + tig0018197:121905-121924 Msa1365060:three_prime_UTR 30.0%
AATCACAATCACAATTCACG+AGG + tig0018197:117736-117755 Msa1365060:five_prime_UTR 35.0%
TATGAATATGAACGTCGTGA+TGG - tig0018197:117915-117934 None:intergenic 35.0%
! TCTCTCATGCTTTCTTGTTT+CGG + tig0018197:117968-117987 Msa1365060:intron 35.0%
! CATTGACGTAACGTATTTTG+AGG + tig0018197:118092-118111 Msa1365060:intron 35.0%
AGGAAAGAAAAAGATGTGCA+TGG - tig0018197:118120-118139 None:intergenic 35.0%
GTAATGAAGTGGTTAATTCC+TGG - tig0018197:118452-118471 None:intergenic 35.0%
! ATAAGTCCATGGTAATGAAG+TGG - tig0018197:118463-118482 None:intergenic 35.0%
GATAAGCTCAAATAAGTCCA+TGG - tig0018197:118474-118493 None:intergenic 35.0%
AAGAAGTTGTGTATCCTAGA+AGG + tig0018197:118633-118652 Msa1365060:intron 35.0%
AGAAGTTGTGTATCCTAGAA+GGG + tig0018197:118634-118653 Msa1365060:intron 35.0%
ATTACCAATATGACCCTTCT+AGG - tig0018197:118650-118669 None:intergenic 35.0%
TTGTGATGAGACCAATCTAT+TGG - tig0018197:118776-118795 None:intergenic 35.0%
!! ATAGATTGGTCTCATCACAA+TGG + tig0018197:118776-118795 Msa1365060:CDS 35.0%
ATTAAGACCAGATTTGTGCA+CGG - tig0018197:119029-119048 None:intergenic 35.0%
ATTCTCATCAGAATTGTCCA+AGG - tig0018197:119161-119180 None:intergenic 35.0%
!! TAACTTTGGAGTCCCTAATA+TGG + tig0018197:119274-119293 Msa1365060:intron 35.0%
CATAGGAAACTCAAAATGGA+TGG - tig0018197:119344-119363 None:intergenic 35.0%
!!! CATCCATTTTGAGTTTCCTA+TGG + tig0018197:119342-119361 Msa1365060:intron 35.0%
TGGAATACCTTAAAACTAGC+AGG - tig0018197:119548-119567 None:intergenic 35.0%
!! GAAACCTTGATAGCAGATTT+TGG + tig0018197:119587-119606 Msa1365060:CDS 35.0%
TTCACCAAAATCTGCTATCA+AGG - tig0018197:119594-119613 None:intergenic 35.0%
!! GATTTTGGTGAAAGTGCAAT+AGG + tig0018197:119602-119621 Msa1365060:CDS 35.0%
! CAACTTTACTATGTGCTGAT+GGG + tig0018197:119783-119802 Msa1365060:CDS 35.0%
CTGTATGATTGATCGTAGAA+TGG + tig0018197:119808-119827 Msa1365060:CDS 35.0%
GCTTCTCATATGATAGCTTA+AGG - tig0018197:120276-120295 None:intergenic 35.0%
!! ATCATATGAGAAGCCACTTT+TGG + tig0018197:120282-120301 Msa1365060:CDS 35.0%
ATCCAATCTGGTAAAGAATC+GGG - tig0018197:120392-120411 None:intergenic 35.0%
! TTTGATTTCATGCCTCATCA+TGG + tig0018197:120413-120432 Msa1365060:CDS 35.0%
!! ATCATGGCGGATACTTTATT+GGG + tig0018197:120429-120448 Msa1365060:CDS 35.0%
ATAATTGCAACTGACTGTTC+AGG - tig0018197:120533-120552 None:intergenic 35.0%
TGAACAGTCAGTTGCAATTA+TGG + tig0018197:120532-120551 Msa1365060:CDS 35.0%
! CCTCCATTCATGATTTTCAA+GGG - tig0018197:120621-120640 None:intergenic 35.0%
! TCCTCCATTCATGATTTTCA+AGG - tig0018197:120622-120641 None:intergenic 35.0%
GTGACCCAAAAAATACTAGA+TGG + tig0018197:120654-120673 Msa1365060:CDS 35.0%
TTGTTCTGCGAAATTCAGAA+TGG - tig0018197:120722-120741 None:intergenic 35.0%
AACAAATGCAGTGGAAACAT+AGG + tig0018197:120800-120819 Msa1365060:intron 35.0%
! TATGGTGATATTGGTTATGG+TGG + tig0018197:121086-121105 Msa1365060:intron 35.0%
TGGTGGTTACAGTTATGTTA+TGG + tig0018197:121103-121122 Msa1365060:intron 35.0%
TGTGTTCCGTCATAATATTC+CGG - tig0018197:121222-121241 None:intergenic 35.0%
! GAATATTATGACGGAACACA+TGG + tig0018197:121222-121241 Msa1365060:CDS 35.0%
! CTTGATGATCCTTCACATTT+AGG + tig0018197:121318-121337 Msa1365060:CDS 35.0%
TGCTCAAGAGATCAAATTCA+TGG + tig0018197:121382-121401 Msa1365060:CDS 35.0%
GAAGTAAGAAATGTAGTGAG+TGG + tig0018197:121462-121481 Msa1365060:three_prime_UTR 35.0%
!! TCCATACTTTTCTTGCTGTG+AGG + tig0018197:117799-117818 Msa1365060:five_prime_UTR 40.0%
ACCTCACAGCAAGAAAAGTA+TGG - tig0018197:117803-117822 None:intergenic 40.0%
ATCTGGGAAGCAGCAATTAA+AGG - tig0018197:118140-118159 None:intergenic 40.0%
TGAAGCACATACGTACATAC+AGG - tig0018197:118333-118352 None:intergenic 40.0%
ACAAAGTCGATCACTAAACC+AGG + tig0018197:118431-118450 Msa1365060:intron 40.0%
GTATCCTAGAAGGGTCATAT+TGG + tig0018197:118643-118662 Msa1365060:intron 40.0%
CTTTAAATAACCCTGTCTGC+AGG + tig0018197:118686-118705 Msa1365060:intron 40.0%
TGCAAGTGCTAAGATATTGC+TGG + tig0018197:118729-118748 Msa1365060:five_prime_UTR 40.0%
ATGAGACCAATCTATTGGAG+GGG - tig0018197:118771-118790 None:intergenic 40.0%
GATGAGACCAATCTATTGGA+GGG - tig0018197:118772-118791 None:intergenic 40.0%
TGATGAGACCAATCTATTGG+AGG - tig0018197:118773-118792 None:intergenic 40.0%
TGGTCTCATCACAATGGTAA+TGG + tig0018197:118782-118801 Msa1365060:CDS 40.0%
ATGTAGTGTCGCAGAATTTG+AGG + tig0018197:118829-118848 Msa1365060:CDS 40.0%
CTCTCAATGTTCAAAGTCCT+TGG - tig0018197:118884-118903 None:intergenic 40.0%
! AGGGAAGTTGTCAAGTTTTG+AGG - tig0018197:118972-118991 None:intergenic 40.0%
CATGATCAAGATGTTCTCCA+AGG - tig0018197:118997-119016 None:intergenic 40.0%
TTAAGACCAGATTTGTGCAC+GGG - tig0018197:119028-119047 None:intergenic 40.0%
TACTCCAAGATCACTGCTAT+TGG + tig0018197:119048-119067 Msa1365060:CDS 40.0%
! ATTCAATTTTGCCCGAAGCT+TGG + tig0018197:119077-119096 Msa1365060:CDS 40.0%
! TTCAATTTTGCCCGAAGCTT+GGG + tig0018197:119078-119097 Msa1365060:CDS 40.0%
TTCACCACGAAAATGTACCA+AGG - tig0018197:119119-119138 None:intergenic 40.0%
GCATGACAAGGTCCATATTA+GGG - tig0018197:119289-119308 None:intergenic 40.0%
AGCATGACAAGGTCCATATT+AGG - tig0018197:119290-119309 None:intergenic 40.0%
TAATATGGACCTTGTCATGC+TGG + tig0018197:119289-119308 Msa1365060:intron 40.0%
CCTCCATAGGAAACTCAAAA+TGG - tig0018197:119348-119367 None:intergenic 40.0%
!!! CCATTTTGAGTTTCCTATGG+AGG + tig0018197:119345-119364 Msa1365060:intron 40.0%
TTTCCTATGGAGGCCTAATA+TGG + tig0018197:119355-119374 Msa1365060:intron 40.0%
TTCCTATGGAGGCCTAATAT+GGG + tig0018197:119356-119375 Msa1365060:intron 40.0%
! ATCAAAAAAGCCAGAGCACT+TGG - tig0018197:119422-119441 None:intergenic 40.0%
!!! CTCTGGCTTTTTTGATGCAT+GGG + tig0018197:119426-119445 Msa1365060:CDS 40.0%
!!! TCTGGCTTTTTTGATGCATG+GGG + tig0018197:119427-119446 Msa1365060:CDS 40.0%
AGACTCTTCGTCTTCAATCA+TGG + tig0018197:119480-119499 Msa1365060:CDS 40.0%
GACTCTTCGTCTTCAATCAT+GGG + tig0018197:119481-119500 Msa1365060:CDS 40.0%
ATAGGTTTCATCTGGCAGAA+GGG + tig0018197:119516-119535 Msa1365060:CDS 40.0%
AATCTGCTATCAAGGTTTCG+CGG - tig0018197:119586-119605 None:intergenic 40.0%
!!! CTCCTGTTGATTCTGGATTT+TGG + tig0018197:119633-119652 Msa1365060:CDS 40.0%
CACCAAAATCCAGAATCAAC+AGG - tig0018197:119638-119657 None:intergenic 40.0%
!!! CTGTTGATTCTGGATTTTGG+TGG + tig0018197:119636-119655 Msa1365060:CDS 40.0%
CGTGCATACACAAAATCTAC+AGG + tig0018197:119671-119690 Msa1365060:CDS 40.0%
TCTGAGTTTATGCTTGTCAG+AGG + tig0018197:119745-119764 Msa1365060:CDS 40.0%
CTGAGTTTATGCTTGTCAGA+GGG + tig0018197:119746-119765 Msa1365060:CDS 40.0%
TGAGTTTATGCTTGTCAGAG+GGG + tig0018197:119747-119766 Msa1365060:CDS 40.0%
CCATCAGCACATAGTAAAGT+TGG - tig0018197:119785-119804 None:intergenic 40.0%
CCAACTTTACTATGTGCTGA+TGG + tig0018197:119782-119801 Msa1365060:CDS 40.0%
! ATCTGGCTTAAGCAATAGCA+TGG - tig0018197:120207-120226 None:intergenic 40.0%
TGCTGAAGGGAAAGAGTTTA+TGG + tig0018197:120226-120245 Msa1365060:CDS 40.0%
!!! TATGAGAAGCCACTTTTGGT+TGG + tig0018197:120286-120305 Msa1365060:CDS 40.0%
GCTTCAAATCCAACCAAAAG+TGG - tig0018197:120298-120317 None:intergenic 40.0%
TTCCCGATTCTTTACCAGAT+TGG + tig0018197:120387-120406 Msa1365060:CDS 40.0%
! ATAAAGTATCCGCCATGATG+AGG - tig0018197:120428-120447 None:intergenic 40.0%
!! CATCATGGCGGATACTTTAT+TGG + tig0018197:120428-120447 Msa1365060:CDS 40.0%
CTTTATTGGGAATGTGAGTC+CGG + tig0018197:120442-120461 Msa1365060:CDS 40.0%
AATTACCAAGGCAAAACCAG+CGG - tig0018197:120481-120500 None:intergenic 40.0%
! CATAGCAATTTTGTCCTGCT+TGG + tig0018197:120502-120521 Msa1365060:CDS 40.0%
TCACGGTGGGAAGAATTAAT+TGG + tig0018197:120566-120585 Msa1365060:CDS 40.0%
CACGGTGGGAAGAATTAATT+GGG + tig0018197:120567-120586 Msa1365060:CDS 40.0%
ACGGTGGGAAGAATTAATTG+GGG + tig0018197:120568-120587 Msa1365060:CDS 40.0%
GCTGGATAACAAACTTTGAC+AGG - tig0018197:120599-120618 None:intergenic 40.0%
!! CATTCATGATTTTCAAGGGC+TGG - tig0018197:120617-120636 None:intergenic 40.0%
CAGCCCTTGAAAATCATGAA+TGG + tig0018197:120615-120634 Msa1365060:CDS 40.0%
CCCTTGAAAATCATGAATGG+AGG + tig0018197:120618-120637 Msa1365060:CDS 40.0%
CATGAATGGAGGATCATAAC+AGG + tig0018197:120629-120648 Msa1365060:CDS 40.0%
ACTAGATGGAGTTACCACAA+TGG + tig0018197:120668-120687 Msa1365060:CDS 40.0%
CTAGATGGAGTTACCACAAT+GGG + tig0018197:120669-120688 Msa1365060:CDS 40.0%
TAGATGGAGTTACCACAATG+GGG + tig0018197:120670-120689 Msa1365060:CDS 40.0%
!! AATGGTAGCATAAGAGTACC+TGG - tig0018197:120704-120723 None:intergenic 40.0%
! TGTGTGTGTACGACTTTTGA+GGG + tig0018197:120753-120772 Msa1365060:intron 40.0%
TATTAGCCAGTCTCCAAACA+AGG + tig0018197:120985-121004 Msa1365060:intron 40.0%
ATTAGCCAGTCTCCAAACAA+GGG + tig0018197:120986-121005 Msa1365060:intron 40.0%
!! AAGGGCACGTTTTGCAATTT+GGG - tig0018197:121163-121182 None:intergenic 40.0%
! CCAGTTGTCTTTTAGCAATC+TGG - tig0018197:121199-121218 None:intergenic 40.0%
CCAGATTGCTAAAAGACAAC+TGG + tig0018197:121196-121215 Msa1365060:CDS 40.0%
ATTGCTAAAAGACAACTGGC+CGG + tig0018197:121200-121219 Msa1365060:CDS 40.0%
AACTGGCCGGAATATTATGA+CGG + tig0018197:121213-121232 Msa1365060:CDS 40.0%
GAACACATGGTCGATACATT+GGG + tig0018197:121235-121254 Msa1365060:CDS 40.0%
CAAATAACCAGCAATAGACC+AGG - tig0018197:121283-121302 None:intergenic 40.0%
! CTGGTCTATTGCTGGTTATT+TGG + tig0018197:121281-121300 Msa1365060:CDS 40.0%
! GTCTATTGCTGGTTATTTGG+TGG + tig0018197:121284-121303 Msa1365060:CDS 40.0%
GAATTTGATCTCTTGAGCAC+AGG - tig0018197:121381-121400 None:intergenic 40.0%
ATACGCAAACACTAGACATG+TGG - tig0018197:121532-121551 None:intergenic 40.0%
ACTTATGAGCATTCCACTGA+AGG - tig0018197:121556-121575 None:intergenic 40.0%
! CTGTGTTCTGTAGAGTTTTC+AGG + tig0018197:121583-121602 Msa1365060:three_prime_UTR 40.0%
!! AGAGTTTTCAGGATCGTCAA+TGG + tig0018197:121594-121613 Msa1365060:three_prime_UTR 40.0%
TATGCACAAGGTGAAACCAA+TGG + tig0018197:121628-121647 Msa1365060:three_prime_UTR 40.0%
GAAACCAATGGTTCGTTATC+AGG + tig0018197:121640-121659 Msa1365060:three_prime_UTR 40.0%
! TGTTCCTGATAACGAACCAT+TGG - tig0018197:121647-121666 None:intergenic 40.0%
TAGCTTCACATTTCGTGATG+TGG - tig0018197:121782-121801 None:intergenic 40.0%
TCCTCAAAATCCTGCAGACA+GGG - tig0018197:118699-118718 None:intergenic 45.0%
AGGCTTATCTCCACGTCTAT+TGG + tig0018197:118946-118965 Msa1365060:CDS 45.0%
!!! AGTTTTGAGGCCAATAGACG+TGG - tig0018197:118959-118978 None:intergenic 45.0%
AGATTTGTGCACGGGAGAAA+AGG - tig0018197:119020-119039 None:intergenic 45.0%
! TTTTCTCCCGTGCACAAATC+TGG + tig0018197:119019-119038 Msa1365060:CDS 45.0%
GAGTCCAATAGCAGTGATCT+TGG - tig0018197:119055-119074 None:intergenic 45.0%
! CGTTCCTTGGTACATTTTCG+TGG + tig0018197:119112-119131 Msa1365060:CDS 45.0%
! CATTTTCGTGGTGAACCAGT+TGG + tig0018197:119124-119143 Msa1365060:CDS 45.0%
AAGGCAGCAATTGTTCCAAC+TGG - tig0018197:119142-119161 None:intergenic 45.0%
AGTTGGAACAATTGCTGCCT+TGG + tig0018197:119141-119160 Msa1365060:CDS 45.0%
TCCTATGGAGGCCTAATATG+GGG + tig0018197:119357-119376 Msa1365060:intron 45.0%
GGGGAATTATACTTGTGCCT+AGG + tig0018197:119376-119395 Msa1365060:intron 45.0%
AGACTTTGTTCCAAGTGCTC+TGG + tig0018197:119409-119428 Msa1365060:CDS 45.0%
!!! GCTCTGGCTTTTTTGATGCA+TGG + tig0018197:119425-119444 Msa1365060:CDS 45.0%
GATAGGTTTCATCTGGCAGA+AGG + tig0018197:119515-119534 Msa1365060:CDS 45.0%
TAGGTTTCATCTGGCAGAAG+GGG + tig0018197:119517-119536 Msa1365060:CDS 45.0%
!!! GGTGATGCCTGCTAGTTTTA+AGG + tig0018197:119538-119557 Msa1365060:CDS 45.0%
! TTGGTGAAAGTGCAATAGGC+AGG + tig0018197:119606-119625 Msa1365060:CDS 45.0%
! TGGTGAAAGTGCAATAGGCA+GGG + tig0018197:119607-119626 Msa1365060:CDS 45.0%
TGACCAGCCTGAATGTCAAA+AGG + tig0018197:119709-119728 Msa1365060:CDS 45.0%
GACCAGCCTGAATGTCAAAA+GGG + tig0018197:119710-119729 Msa1365060:CDS 45.0%
! TACCCTTTTGACATTCAGGC+TGG - tig0018197:119715-119734 None:intergenic 45.0%
! CGCATACCCTTTTGACATTC+AGG - tig0018197:119719-119738 None:intergenic 45.0%
TTGCTTAAGCCAGATGCTGA+AGG + tig0018197:120212-120231 Msa1365060:CDS 45.0%
TGCTTAAGCCAGATGCTGAA+GGG + tig0018197:120213-120232 Msa1365060:CDS 45.0%
AACTCTTTCCCTTCAGCATC+TGG - tig0018197:120224-120243 None:intergenic 45.0%
GATTTCATGCCTCATCATGG+CGG + tig0018197:120416-120435 Msa1365060:CDS 45.0%
TGGATCTCATAGAATCACGG+TGG + tig0018197:120552-120571 Msa1365060:CDS 45.0%
GGATCTCATAGAATCACGGT+GGG + tig0018197:120553-120572 Msa1365060:CDS 45.0%
AGATGGAGTTACCACAATGG+GGG + tig0018197:120671-120690 Msa1365060:CDS 45.0%
! GTGTGTGTGTACGACTTTTG+AGG + tig0018197:120752-120771 Msa1365060:intron 45.0%
GACTAAATCACGATGACACG+TGG - tig0018197:120929-120948 None:intergenic 45.0%
GCATTAGCATAGCCCTTGTT+TGG - tig0018197:121001-121020 None:intergenic 45.0%
! GTTATGGTTTTTGTCTGCGG+CGG + tig0018197:121119-121138 Msa1365060:CDS 45.0%
! AGGGCACGTTTTGCAATTTG+GGG - tig0018197:121162-121181 None:intergenic 45.0%
!! GAAGGGCACGTTTTGCAATT+TGG - tig0018197:121164-121183 None:intergenic 45.0%
TCTGGCCTCAGCAATTTGAA+GGG - tig0018197:121181-121200 None:intergenic 45.0%
ATCTGGCCTCAGCAATTTGA+AGG - tig0018197:121182-121201 None:intergenic 45.0%
GGAACACATGGTCGATACAT+TGG + tig0018197:121234-121253 Msa1365060:CDS 45.0%
AACCAGCAATAGACCAGGTT+TGG - tig0018197:121278-121297 None:intergenic 45.0%
! TTGCTGGTTATTTGGTGGCT+AGG + tig0018197:121289-121308 Msa1365060:CDS 45.0%
TGAAGAAGACCGACAGCTAA+AGG + tig0018197:121353-121372 Msa1365060:CDS 45.0%
GTAGTGAGTGGAAGAATGTG+TGG + tig0018197:121474-121493 Msa1365060:three_prime_UTR 45.0%
GTGTTTGCGTATTCCTTCAG+TGG + tig0018197:121540-121559 Msa1365060:three_prime_UTR 45.0%
!!! TTTTTTTTTTATTCTTTTAA+TGG + tig0018197:119242-119261 Msa1365060:intron 5.0%
! CGTCGTGATGGAAATGCGAA+GGG - tig0018197:117903-117922 None:intergenic 50.0%
! ACGTCGTGATGGAAATGCGA+AGG - tig0018197:117904-117923 None:intergenic 50.0%
! ACCCTGTCTGCAGGATTTTG+AGG + tig0018197:118695-118714 Msa1365060:intron 50.0%
GTCCTCAAAATCCTGCAGAC+AGG - tig0018197:118700-118719 None:intergenic 50.0%
CCAATCTATTGGAGGGGTAG+AGG - tig0018197:118765-118784 None:intergenic 50.0%
CCTCTACCCCTCCAATAGAT+TGG + tig0018197:118762-118781 Msa1365060:CDS 50.0%
CAAGATGTTCTCCAAGGCGA+GGG - tig0018197:118991-119010 None:intergenic 50.0%
TCAAGATGTTCTCCAAGGCG+AGG - tig0018197:118992-119011 None:intergenic 50.0%
ACCTTGTCATGCTGGATCAG+TGG + tig0018197:119297-119316 Msa1365060:intron 50.0%
ACCACTGATCCAGCATGACA+AGG - tig0018197:119301-119320 None:intergenic 50.0%
TCCCCATATTAGGCCTCCAT+AGG - tig0018197:119361-119380 None:intergenic 50.0%
AAGGTTTCGCGGTTTCTGAC+CGG - tig0018197:119575-119594 None:intergenic 50.0%
!! AGGGTTGCTCCTGTTGATTC+TGG + tig0018197:119626-119645 Msa1365060:CDS 50.0%
!! TGCTACTACTAGGCACTGAC+AGG + tig0018197:120047-120066 Msa1365060:intron 50.0%
!! GCTACTACTAGGCACTGACA+GGG + tig0018197:120048-120067 Msa1365060:intron 50.0%
!! CTACTACTAGGCACTGACAG+GGG + tig0018197:120049-120068 Msa1365060:intron 50.0%
!!! GATTTCCGCTGGTTTTGCCT+TGG + tig0018197:120473-120492 Msa1365060:CDS 50.0%
GTTACCACAATGGGGGATCT+TGG + tig0018197:120678-120697 Msa1365060:CDS 50.0%
! CATAGCCCTTGTTTGGAGAC+TGG - tig0018197:120994-121013 None:intergenic 50.0%
ACGTGCCCTTCAAATTGCTG+AGG + tig0018197:121173-121192 Msa1365060:CDS 50.0%
TGGTCGATACATTGGGAAGC+AGG + tig0018197:121242-121261 Msa1365060:CDS 50.0%
AGGCTCGAAAATGCCAAACC+TGG + tig0018197:121262-121281 Msa1365060:CDS 50.0%
TGCCAAACCTGGTCTATTGC+TGG + tig0018197:121273-121292 Msa1365060:CDS 50.0%
GCACAGGATCCTTTAGCTGT+CGG - tig0018197:121365-121384 None:intergenic 50.0%
CAGGAACAGCTTGCAGTTCT+TGG + tig0018197:121659-121678 Msa1365060:three_prime_UTR 50.0%
GAACAGCTTGCAGTTCTTGG+TGG + tig0018197:121662-121681 Msa1365060:three_prime_UTR 50.0%
CTTGACAACTTCCCTCGCCT+TGG + tig0018197:118977-118996 Msa1365060:CDS 55.0%
CTGAGAGCTTCCCAAGCTTC+GGG - tig0018197:119091-119110 None:intergenic 55.0%
CCTGAGAGCTTCCCAAGCTT+CGG - tig0018197:119092-119111 None:intergenic 55.0%
TTGGGAATGTGAGTCCGGCT+AGG + tig0018197:120447-120466 Msa1365060:CDS 55.0%
GAATGTGAGTCCGGCTAGGA+TGG + tig0018197:120451-120470 Msa1365060:CDS 55.0%
CAGCGGAAATCCATCCTAGC+CGG - tig0018197:120464-120483 None:intergenic 55.0%
CTGTTCAGGAGTTGCCAAGC+AGG - tig0018197:120519-120538 None:intergenic 55.0%
! GCTTGCAGTTCTTGGTGGAC+TGG + tig0018197:121667-121686 Msa1365060:three_prime_UTR 55.0%
CCGAAGCTTGGGAAGCTCTC+AGG + tig0018197:119089-119108 Msa1365060:CDS 60.0%
GGAAGCTCTCAGGCGTTCCT+TGG + tig0018197:119099-119118 Msa1365060:CDS 60.0%
CGCGGTTTCTGACCGGATCA+TGG - tig0018197:119568-119587 None:intergenic 60.0%
! CGGCTAGGATGGATTTCCGC+TGG + tig0018197:120462-120481 Msa1365060:CDS 60.0%
CTGGCCAAGATCCCCCATTG+TGG - tig0018197:120685-120704 None:intergenic 60.0%
CACAATGGGGGATCTTGGCC+AGG + tig0018197:120683-120702 Msa1365060:CDS 60.0%
TCTGCGGCGGCTATCAAGAC+TGG + tig0018197:121132-121151 Msa1365060:CDS 60.0%
CTGCGGCGGCTATCAAGACT+GGG + tig0018197:121133-121152 Msa1365060:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0018197 gene 117736 121969 117736 ID=Msa1365060;Name=Msa1365060
tig0018197 mRNA 117736 121969 117736 ID=Msa1365060-mRNA-1;Parent=Msa1365060;Name=Msa1365060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|1|1|0.75|0.6|5|556|576
tig0018197 exon 117736 117820 117736 ID=Msa1365060-mRNA-1:exon:14359;Parent=Msa1365060-mRNA-1
tig0018197 exon 118708 119195 118708 ID=Msa1365060-mRNA-1:exon:14360;Parent=Msa1365060-mRNA-1
tig0018197 exon 119398 119829 119398 ID=Msa1365060-mRNA-1:exon:14361;Parent=Msa1365060-mRNA-1
tig0018197 exon 120146 120704 120146 ID=Msa1365060-mRNA-1:exon:14362;Parent=Msa1365060-mRNA-1
tig0018197 exon 121115 121969 121115 ID=Msa1365060-mRNA-1:exon:14363;Parent=Msa1365060-mRNA-1
tig0018197 five_prime_UTR 117736 117820 117736 ID=Msa1365060-mRNA-1:five_prime_utr;Parent=Msa1365060-mRNA-1
tig0018197 five_prime_UTR 118708 118754 118708 ID=Msa1365060-mRNA-1:five_prime_utr;Parent=Msa1365060-mRNA-1
tig0018197 CDS 118755 119195 118755 ID=Msa1365060-mRNA-1:cds;Parent=Msa1365060-mRNA-1
tig0018197 CDS 119398 119829 119398 ID=Msa1365060-mRNA-1:cds;Parent=Msa1365060-mRNA-1
tig0018197 CDS 120146 120704 120146 ID=Msa1365060-mRNA-1:cds;Parent=Msa1365060-mRNA-1
tig0018197 CDS 121115 121413 121115 ID=Msa1365060-mRNA-1:cds;Parent=Msa1365060-mRNA-1
tig0018197 three_prime_UTR 121414 121969 121414 ID=Msa1365060-mRNA-1:three_prime_utr;Parent=Msa1365060-mRNA-1
Gene Sequence

>Msa1365060

ATGTCTACCTCTACCCCTCCAATAGATTGGTCTCATCACAATGGTAATGGAAATTTGAAAAGTCAAGACTCGCTATGTAGTGTCGCAGAATTTGAGGAATTTGATTTCTCTAAAGTATTAGATAAGCCAAGGACTTTGAACATTGAGAGACAAAGATCATGTGATGAAAGATCAATGAGTGAACTATCAATAGGCTTATCTCCACGTCTATTGGCCTCAAAACTTGACAACTTCCCTCGCCTTGGAGAACATCTTGATCATGCCTTTTCTCCCGTGCACAAATCTGGTCTTAATACTCCAAGATCACTGCTATTGGACTCTCATTCAATTTTGCCCGAAGCTTGGGAAGCTCTCAGGCGTTCCTTGGTACATTTTCGTGGTGAACCAGTTGGAACAATTGCTGCCTTGGACAATTCTGATGAGAATCTTAATTATGATCAGGTTTTTGTTAGAGACTTTGTTCCAAGTGCTCTGGCTTTTTTGATGCATGGGGAACCAGACATTGTTAAGAATTTTCTCTTGAAGACTCTTCGTCTTCAATCATGGGAAAAAAAGATTGATAGGTTTCATCTGGCAGAAGGGGTGATGCCTGCTAGTTTTAAGGTATTCCATGATCCGGTCAGAAACCGCGAAACCTTGATAGCAGATTTTGGTGAAAGTGCAATAGGCAGGGTTGCTCCTGTTGATTCTGGATTTTGGTGGATCATATTGCTTCGTGCATACACAAAATCTACAGGAGACTCTTCTTTAGCTGACCAGCCTGAATGTCAAAAGGGTATGCGTTTGATTCTGAGTTTATGCTTGTCAGAGGGGTTTGATACATTTCCAACTTTACTATGTGCTGATGGGTGCTGTATGATTGATCGTAGAATGGGTGTTTATGGCTATCCAATTGAAATTCAAGCATTGTTCTTCATGGCTTTAAGATGTGCCATGCTATTGCTTAAGCCAGATGCTGAAGGGAAAGAGTTTATGGAACGAATTGCGAAACGCTTGCATGCCTTAAGCTATCATATGAGAAGCCACTTTTGGTTGGATTTGAAGCAACTTAATGATATATATCGATTCAAAACAGAAGAGTATTCACATACTGCTGTGAACAAGTTTAATGTCATTCCCGATTCTTTACCAGATTGGATTTTTGATTTCATGCCTCATCATGGCGGATACTTTATTGGGAATGTGAGTCCGGCTAGGATGGATTTCCGCTGGTTTTGCCTTGGTAATTGCATAGCAATTTTGTCCTGCTTGGCAACTCCTGAACAGTCAGTTGCAATTATGGATCTCATAGAATCACGGTGGGAAGAATTAATTGGGGAGATGCCTGTCAAAGTTTGTTATCCAGCCCTTGAAAATCATGAATGGAGGATCATAACAGGATGTGACCCAAAAAATACTAGATGGAGTTACCACAATGGGGGATCTTGGCCAGTTATGTTATGGTTTTTGTCTGCGGCGGCTATCAAGACTGGGCGACCCCAAATTGCAAAACGTGCCCTTCAAATTGCTGAGGCCAGATTGCTAAAAGACAACTGGCCGGAATATTATGACGGAACACATGGTCGATACATTGGGAAGCAGGCTCGAAAATGCCAAACCTGGTCTATTGCTGGTTATTTGGTGGCTAGGATGATGCTTGATGATCCTTCACATTTAGGTATTATAGCACTTGAAGAAGACCGACAGCTAAAGGATCCTGTGCTCAAGAGATCAAATTCATGGACTTTGTGA
Protein sequence

>Msa1365060

MSTSTPPIDWSHHNGNGNLKSQDSLCSVAEFEEFDFSKVLDKPRTLNIERQRSCDERSMSELSIGLSPRLLASKLDNFPRLGEHLDHAFSPVHKSGLNTPRSLLLDSHSILPEAWEALRRSLVHFRGEPVGTIAALDNSDENLNYDQVFVRDFVPSALAFLMHGEPDIVKNFLLKTLRLQSWEKKIDRFHLAEGVMPASFKVFHDPVRNRETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLADQPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCAMLLLKPDAEGKEFMERIAKRLHALSYHMRSHFWLDLKQLNDIYRFKTEEYSHTAVNKFNVIPDSLPDWIFDFMPHHGGYFIGNVSPARMDFRWFCLGNCIAILSCLATPEQSVAIMDLIESRWEELIGEMPVKVCYPALENHEWRIITGCDPKNTRWSYHNGGSWPVMLWFLSAAAIKTGRPQIAKRALQIAEARLLKDNWPEYYDGTHGRYIGKQARKCQTWSIAGYLVARMMLDDPSHLGIIALEEDRQLKDPVLKRSNSWTL*