Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465000 | XP_013460747.1 | 95.046 | 323 | 7 | 5 | 1 | 320 | 1 | 317 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465000 | A0A072UZB5 | 95.046 | 323 | 7 | 5 | 1 | 320 | 1 | 317 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101810 | Msa1465000 | 0.817100 | 3.927804e-52 | -8.615850e-47 |
| Msa0756630 | Msa1465000 | 0.809429 | 1.900553e-50 | -8.615850e-47 |
| Msa0193630 | Msa1465000 | 0.812574 | 3.959202e-51 | -8.615850e-47 |
| Msa0215320 | Msa1465000 | 0.814326 | 1.631152e-51 | -8.615850e-47 |
| Msa1259590 | Msa1465000 | 0.812997 | 3.198556e-51 | -8.615850e-47 |
| Msa1299290 | Msa1465000 | 0.820632 | 6.190774e-53 | -8.615850e-47 |
| Msa1317320 | Msa1465000 | 0.809273 | 2.052963e-50 | -8.615850e-47 |
| Msa1332040 | Msa1465000 | 0.812347 | 4.437587e-51 | -8.615850e-47 |
| Msa0465670 | Msa1465000 | 0.821427 | 4.062005e-53 | -8.615850e-47 |
| Msa1033410 | Msa1465000 | 0.800333 | 1.513764e-48 | -8.615850e-47 |
| Msa0298310 | Msa1465000 | 0.815646 | 8.310748e-52 | -8.615850e-47 |
| Msa0336040 | Msa1465000 | 0.809540 | 1.799228e-50 | -8.615850e-47 |
| Msa1116130 | Msa1465000 | 0.804590 | 2.007911e-49 | -8.615850e-47 |
| Msa1162550 | Msa1465000 | 0.813580 | 2.381731e-51 | -8.615850e-47 |
| Msa1183100 | Msa1465000 | 0.823231 | 1.547888e-53 | -8.615850e-47 |
| Msa1211140 | Msa1465000 | 0.826049 | 3.357597e-54 | -8.615850e-47 |
| Msa0585000 | Msa1465000 | 0.802392 | 5.732596e-49 | -8.615850e-47 |
| Msa0598360 | Msa1465000 | 0.806148 | 9.467759e-50 | -8.615850e-47 |
| Msa0930460 | Msa1465000 | 0.807780 | 4.275455e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465000 | MtrunA17_Chr3g0113171 | 95.046 | 323 | 7 | 5 | 1 | 320 | 1 | 317 | 0.0 | 584 |
| Msa1465000 | MtrunA17_Chr6g0467891 | 31.511 | 311 | 162 | 8 | 13 | 305 | 6 | 283 | 1.07e-30 | 117 |
| Msa1465000 | MtrunA17_Chr1g0161101 | 80.392 | 102 | 17 | 2 | 200 | 301 | 248 | 346 | 1.13e-30 | 120 |
| Msa1465000 | MtrunA17_Chr1g0155171 | 33.858 | 127 | 82 | 1 | 13 | 137 | 6 | 132 | 6.28e-23 | 97.4 |
| Msa1465000 | MtrunA17_Chr7g0274441 | 34.074 | 135 | 74 | 5 | 14 | 138 | 13 | 142 | 1.22e-13 | 70.9 |
| Msa1465000 | MtrunA17_Chr1g0190331 | 31.361 | 169 | 101 | 7 | 14 | 173 | 11 | 173 | 1.48e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465000 | AT1G07310.1 | 53.147 | 143 | 59 | 2 | 1 | 140 | 1 | 138 | 9.90e-43 | 151 |
| Msa1465000 | AT5G23950.1 | 37.500 | 128 | 77 | 2 | 13 | 137 | 7 | 134 | 9.01e-24 | 97.4 |
| Msa1465000 | AT5G23950.2 | 37.500 | 128 | 77 | 2 | 13 | 137 | 23 | 150 | 1.94e-23 | 97.1 |
| Msa1465000 | AT2G13350.1 | 32.061 | 131 | 81 | 3 | 14 | 141 | 10 | 135 | 1.46e-12 | 68.2 |
Find 118 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCTGTTGGTGCTGCTGC+TGG | 0.076237 | tig0044793:+3105 | Msa1465000:CDS |
| AAGGAAGGATTTGAAGAATT+AGG | 0.174752 | tig0044793:-2799 | Msa1465000:intergenic |
| TAATCAAATATTTGTGATAT+TGG | 0.232143 | tig0044793:-2733 | Msa1465000:intergenic |
| TGGCTGTTGGTGCTGCTGCT+GGG | 0.233355 | tig0044793:+3106 | Msa1465000:CDS |
| TGGTGCTGCTGCTGGGGCGC+TGG | 0.267876 | tig0044793:+3113 | Msa1465000:CDS |
| TCCAGTGGCGGTTACTTTCC+CGG | 0.272953 | tig0044793:+2913 | Msa1465000:CDS |
| GAGGCCAAAAGGCGGTAAAA+TGG | 0.280849 | tig0044793:+3068 | Msa1465000:CDS |
| GTTGTTATTATCAGAGTAAT+TGG | 0.288475 | tig0044793:-2887 | Msa1465000:intergenic |
| AGGAAGGATTTGAAGAATTA+GGG | 0.293121 | tig0044793:-2798 | Msa1465000:intergenic |
| GGATTTGAAGAATTAGGGTT+AGG | 0.316561 | tig0044793:-2793 | Msa1465000:intergenic |
| GAAGAATTAGGGTTAGGGTT+AGG | 0.317512 | tig0044793:-2787 | Msa1465000:intergenic |
| TTAGGAGCTGGGCTGGCTGT+TGG | 0.318044 | tig0044793:+3093 | Msa1465000:CDS |
| AGAGCGTAGGCTCGCGGATA+TGG | 0.318191 | tig0044793:+3170 | Msa1465000:CDS |
| GGTAAAATGGGCTTAGGAGC+TGG | 0.324106 | tig0044793:+3081 | Msa1465000:CDS |
| GGCGCTGGGTGGACTTGCTC+TGG | 0.326367 | tig0044793:+3128 | Msa1465000:CDS |
| TCAAACCTTACGTCGTCTTC+TGG | 0.326697 | tig0044793:+2392 | Msa1465000:CDS |
| GGCCGTGGATGCGGCGGTGG+TGG | 0.328622 | tig0044793:-2961 | Msa1465000:intergenic |
| GGTGCTGCTGCTGGGGCGCT+GGG | 0.338151 | tig0044793:+3114 | Msa1465000:CDS |
| GTTACCGGAATCGTCGGATT+TGG | 0.347027 | tig0044793:-2440 | Msa1465000:intergenic |
| AAGAATTAGGGTTAGGGTTA+GGG | 0.354998 | tig0044793:-2786 | Msa1465000:intergenic |
| GCTTCTGCGAGGGATGATTA+TGG | 0.360988 | tig0044793:+3207 | Msa1465000:CDS |
| CCAGACAGGGGAGGTGTTAC+CGG | 0.363078 | tig0044793:-2455 | Msa1465000:intergenic |
| TTAGGGTTAGGGTTAGGAAA+AGG | 0.375217 | tig0044793:-2775 | Msa1465000:intergenic |
| TACTTTCCCGGCTATTATCC+TGG | 0.379552 | tig0044793:+2925 | Msa1465000:CDS |
| TTTAGGTGTATCAGAGGGTT+TGG | 0.391011 | tig0044793:-2548 | Msa1465000:intergenic |
| GCGGAGGAGGAGAGCGGCCA+AGG | 0.395404 | tig0044793:-2702 | Msa1465000:intergenic |
| GGCTGTTGGTGCTGCTGCTG+GGG | 0.397402 | tig0044793:+3107 | Msa1465000:CDS |
| TTAGGGTTAGGAAAAGGGTT+AGG | 0.401809 | tig0044793:-2769 | Msa1465000:intergenic |
| TTAGGGTTAGGGTTAGGGTT+AGG | 0.402041 | tig0044793:-2781 | Msa1465000:intergenic |
| GCCACCAAATCCGACGATTC+CGG | 0.404250 | tig0044793:+2436 | Msa1465000:CDS |
| TCAAGGGTGAGGGTGGAATC+TGG | 0.414969 | tig0044793:-2514 | Msa1465000:intergenic |
| AGGGTGGCGACGAGGGGTTT+AGG | 0.421076 | tig0044793:-2565 | Msa1465000:intergenic |
| CGTGGATGCGGCGGTGGTGG+TGG | 0.421610 | tig0044793:-2958 | Msa1465000:intergenic |
| TAGGGTTAGGGTTAGGAAAA+GGG | 0.431404 | tig0044793:-2774 | Msa1465000:intergenic |
| CGGCCTTTCTTCGAACGTAC+TGG | 0.442339 | tig0044793:+2979 | Msa1465000:CDS |
| CATCTCAAAATTAGCCTCCT+TGG | 0.444416 | tig0044793:+2685 | Msa1465000:CDS |
| TAGGGTTAGGAAAAGGGTTA+GGG | 0.447717 | tig0044793:-2768 | Msa1465000:intergenic |
| GTTTGGAATGGAAGATTTCA+AGG | 0.449335 | tig0044793:-2531 | Msa1465000:intergenic |
| AAAGGCCGTGGATGCGGCGG+TGG | 0.449486 | tig0044793:-2964 | Msa1465000:intergenic |
| TCGACCCTCGGGTCGACCGC+AGG | 0.451740 | tig0044793:+2654 | Msa1465000:CDS |
| GTAAAATGGGCTTAGGAGCT+GGG | 0.453520 | tig0044793:+3082 | Msa1465000:CDS |
| AGGCCAAAAGGCGGTAAAAT+GGG | 0.457063 | tig0044793:+3069 | Msa1465000:CDS |
| GCTGCTGCTGGGGCGCTGGG+TGG | 0.457405 | tig0044793:+3117 | Msa1465000:CDS |
| GTGAGGGTGGAATCTGGAAG+AGG | 0.460149 | tig0044793:-2508 | Msa1465000:intergenic |
| CTTCCAGTACGTTCGAAGAA+AGG | 0.460738 | tig0044793:-2982 | Msa1465000:intergenic |
| GGGGAATTTCTTGACGATTG+TGG | 0.465481 | tig0044793:-2626 | Msa1465000:intergenic |
| TCTGGAAGAGGGAGAGAGAG+AGG | 0.466491 | tig0044793:-2496 | Msa1465000:intergenic |
| GTGAAACGTTCGTTCCAGAC+AGG | 0.469239 | tig0044793:-2469 | Msa1465000:intergenic |
| GATTTGAAGAATTAGGGTTA+GGG | 0.472057 | tig0044793:-2792 | Msa1465000:intergenic |
| ATTGGTGGCGATGGCGGAGG+AGG | 0.473138 | tig0044793:-2715 | Msa1465000:intergenic |
| GCCGGGAAAGTAACCGCCAC+TGG | 0.481445 | tig0044793:-2914 | Msa1465000:intergenic |
| TTTCCCCTGCGGTCGACCCG+AGG | 0.486560 | tig0044793:-2659 | Msa1465000:intergenic |
| TGAGGGTGGAATCTGGAAGA+GGG | 0.492481 | tig0044793:-2507 | Msa1465000:intergenic |
| ACCGGAATCGTCGGATTTGG+TGG | 0.496788 | tig0044793:-2437 | Msa1465000:intergenic |
| TCGAAGAAAGGCCGTGGATG+CGG | 0.501968 | tig0044793:-2970 | Msa1465000:intergenic |
| TCAAATATTTGTGATATTGG+TGG | 0.502304 | tig0044793:-2730 | Msa1465000:intergenic |
| GGTGGACTTGCTCTGGAAGA+AGG | 0.504623 | tig0044793:+3135 | Msa1465000:CDS |
| TCGTTTGATCCGAGGCCAAA+AGG | 0.505467 | tig0044793:+3057 | Msa1465000:CDS |
| ATTGTGGAGTGATGAAGGTC+AGG | 0.511229 | tig0044793:-2610 | Msa1465000:intergenic |
| AATGGAAGATTTCAAGGGTG+AGG | 0.517676 | tig0044793:-2525 | Msa1465000:intergenic |
| TTGGTGGCGAGACGACGGTC+AGG | 0.522193 | tig0044793:-2421 | Msa1465000:intergenic |
| TAATTGGTGTAGTAATTGTA+AGG | 0.523238 | tig0044793:-2871 | Msa1465000:intergenic |
| CCTCTGTAATAAACAAAGGA+AGG | 0.524539 | tig0044793:-2814 | Msa1465000:intergenic |
| AAAGGCGGTAAAATGGGCTT+AGG | 0.525264 | tig0044793:+3075 | Msa1465000:CDS |
| GAAGATTTCAAGGGTGAGGG+TGG | 0.525665 | tig0044793:-2521 | Msa1465000:intergenic |
| AATGGGCTTAGGAGCTGGGC+TGG | 0.527327 | tig0044793:+3086 | Msa1465000:CDS |
| AGCACCACCAGGATAATAGC+CGG | 0.537233 | tig0044793:-2932 | Msa1465000:intergenic |
| AAGACGGAGGGTGGCGACGA+GGG | 0.538928 | tig0044793:-2572 | Msa1465000:intergenic |
| ACTGGAAGTTATGCTGCTGC+TGG | 0.539584 | tig0044793:+2997 | Msa1465000:CDS |
| AGACGGAGGGTGGCGACGAG+GGG | 0.544160 | tig0044793:-2571 | Msa1465000:intergenic |
| GATATTGGTGGCGATGGCGG+AGG | 0.547136 | tig0044793:-2718 | Msa1465000:intergenic |
| CCTTCCTTTGTTTATTACAG+AGG | 0.547419 | tig0044793:+2814 | Msa1465000:CDS |
| TAAGGTGAAGGTGGTGGAGA+AGG | 0.551750 | tig0044793:-2853 | Msa1465000:intergenic |
| TGACGATTGTGGAGTGATGA+AGG | 0.551893 | tig0044793:-2615 | Msa1465000:intergenic |
| GTGTATCAGAGGGTTTGGAA+TGG | 0.552294 | tig0044793:-2543 | Msa1465000:intergenic |
| CTGGAAGAGGGAGAGAGAGA+GGG | 0.556639 | tig0044793:-2495 | Msa1465000:intergenic |
| TCGAGCCAGAAGACGACGTA+AGG | 0.557049 | tig0044793:-2397 | Msa1465000:intergenic |
| CACCACCACCGCCGCATCCA+CGG | 0.557607 | tig0044793:+2959 | Msa1465000:CDS |
| TTCCCCTGCGGTCGACCCGA+GGG | 0.559120 | tig0044793:-2658 | Msa1465000:intergenic |
| TAATTGTAAGGTGAAGGTGG+TGG | 0.564902 | tig0044793:-2859 | Msa1465000:intergenic |
| GATTGTGAGGTCGAGATCGA+TGG | 0.566508 | tig0044793:-2323 | Msa1465000:intergenic |
| GAATATTCAAGCGGCGCAGA+CGG | 0.570476 | tig0044793:-3030 | Msa1465000:intergenic |
| ATGGAAGATTTCAAGGGTGA+GGG | 0.571075 | tig0044793:-2524 | Msa1465000:intergenic |
| ATTTGTGATATTGGTGGCGA+TGG | 0.576104 | tig0044793:-2724 | Msa1465000:intergenic |
| GTATGAAGAGCGTAGGCTCG+CGG | 0.582107 | tig0044793:+3164 | Msa1465000:CDS |
| GAGGAGGAGAGCGGCCAAGG+AGG | 0.583527 | tig0044793:-2699 | Msa1465000:intergenic |
| GTACGTTCGAAGAAAGGCCG+TGG | 0.583737 | tig0044793:-2976 | Msa1465000:intergenic |
| AGCGGCGCAGACGGTCCACT+CGG | 0.585090 | tig0044793:-3021 | Msa1465000:intergenic |
| GCACCACCAGGATAATAGCC+GGG | 0.589598 | tig0044793:-2931 | Msa1465000:intergenic |
| TGAAACGTTCGTTCCAGACA+GGG | 0.595228 | tig0044793:-2468 | Msa1465000:intergenic |
| ATTCGTCCTCGTTTGATCCG+AGG | 0.596452 | tig0044793:+3049 | Msa1465000:CDS |
| GTGTAGTAATTGTAAGGTGA+AGG | 0.597455 | tig0044793:-2865 | Msa1465000:intergenic |
| TTTGGAATGGAAGATTTCAA+GGG | 0.601290 | tig0044793:-2530 | Msa1465000:intergenic |
| GACGTAAGGTTTGAGATCGC+CGG | 0.613088 | tig0044793:-2383 | Msa1465000:intergenic |
| GAATGAAGTATGAAGAGCGT+AGG | 0.613867 | tig0044793:+3157 | Msa1465000:CDS |
| GAGGGGTTTAGGTGTATCAG+AGG | 0.614432 | tig0044793:-2554 | Msa1465000:intergenic |
| AAGAAAGGCCGTGGATGCGG+CGG | 0.614958 | tig0044793:-2967 | Msa1465000:intergenic |
| TGTGATATTGGTGGCGATGG+CGG | 0.620826 | tig0044793:-2721 | Msa1465000:intergenic |
| GTTTCCTCTGTAATAAACAA+AGG | 0.622784 | tig0044793:-2818 | Msa1465000:intergenic |
| GGAGGTGTTACCGGAATCGT+CGG | 0.623758 | tig0044793:-2446 | Msa1465000:intergenic |
| GAAGACGGAGGGTGGCGACG+AGG | 0.628097 | tig0044793:-2573 | Msa1465000:intergenic |
| GATAATAACAACTATTCCAG+TGG | 0.628118 | tig0044793:+2898 | Msa1465000:CDS |
| CGGATTTGGTGGCGAGACGA+CGG | 0.636038 | tig0044793:-2426 | Msa1465000:intergenic |
| TAGTAATTGTAAGGTGAAGG+TGG | 0.637754 | tig0044793:-2862 | Msa1465000:intergenic |
| AGGGGTTTAGGTGTATCAGA+GGG | 0.643433 | tig0044793:-2553 | Msa1465000:intergenic |
| TTTCCCGGCTATTATCCTGG+TGG | 0.643598 | tig0044793:+2928 | Msa1465000:CDS |
| AAGTGATGTTGCTTCTGCGA+GGG | 0.644221 | tig0044793:+3197 | Msa1465000:CDS |
| TGGAGTGATGAAGGTCAGGA+AGG | 0.646188 | tig0044793:-2606 | Msa1465000:intergenic |
| GCGATGGCGGAGGAGGAGAG+CGG | 0.646928 | tig0044793:-2708 | Msa1465000:intergenic |
| AATAACAACTATTCCAGTGG+CGG | 0.658986 | tig0044793:+2901 | Msa1465000:CDS |
| GGTGGTGGATAAGCACCACC+AGG | 0.660900 | tig0044793:-2943 | Msa1465000:intergenic |
| TATGCTGCTGCTGGACCGAG+TGG | 0.662941 | tig0044793:+3006 | Msa1465000:CDS |
| AAAGTGATGTTGCTTCTGCG+AGG | 0.674432 | tig0044793:+3196 | Msa1465000:CDS |
| ACGTTCGTTCCAGACAGGGG+AGG | 0.675395 | tig0044793:-2464 | Msa1465000:intergenic |
| AACGAGGACGAATATTCAAG+CGG | 0.682229 | tig0044793:-3039 | Msa1465000:intergenic |
| GAAACGTTCGTTCCAGACAG+GGG | 0.711126 | tig0044793:-2467 | Msa1465000:intergenic |
| GTTTGGCGGAGATGATTGTG+AGG | 0.714272 | tig0044793:-2336 | Msa1465000:intergenic |
| TTTGATCCGAGGCCAAAAGG+CGG | 0.724493 | tig0044793:+3060 | Msa1465000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAATATTTGTGATAT+TGG | - | tig0044793:2736-2755 | Msa1465000:intergenic | 15.0% |
| !! | TAATCAAATATTTGTGATAT+TGG | - | tig0044793:2736-2755 | Msa1465000:intergenic | 15.0% |
| ! | TCAAATATTTGTGATATTGG+TGG | - | tig0044793:2733-2752 | Msa1465000:intergenic | 25.0% |
| ! | TAATTGGTGTAGTAATTGTA+AGG | - | tig0044793:2874-2893 | Msa1465000:intergenic | 25.0% |
| !! | GTTGTTATTATCAGAGTAAT+TGG | - | tig0044793:2890-2909 | Msa1465000:intergenic | 25.0% |
| ! | TCAAATATTTGTGATATTGG+TGG | - | tig0044793:2733-2752 | Msa1465000:intergenic | 25.0% |
| ! | TAATTGGTGTAGTAATTGTA+AGG | - | tig0044793:2874-2893 | Msa1465000:intergenic | 25.0% |
| !! | GTTGTTATTATCAGAGTAAT+TGG | - | tig0044793:2890-2909 | Msa1465000:intergenic | 25.0% |
| ! | TTTGGAATGGAAGATTTCAA+GGG | - | tig0044793:2533-2552 | Msa1465000:intergenic | 30.0% |
| GATTTGAAGAATTAGGGTTA+GGG | - | tig0044793:2795-2814 | Msa1465000:intergenic | 30.0% | |
| AGGAAGGATTTGAAGAATTA+GGG | - | tig0044793:2801-2820 | Msa1465000:intergenic | 30.0% | |
| AAGGAAGGATTTGAAGAATT+AGG | - | tig0044793:2802-2821 | Msa1465000:intergenic | 30.0% | |
| GTTTCCTCTGTAATAAACAA+AGG | - | tig0044793:2821-2840 | Msa1465000:intergenic | 30.0% | |
| GATAATAACAACTATTCCAG+TGG | + | tig0044793:2898-2917 | Msa1465000:CDS | 30.0% | |
| ! | TTTGGAATGGAAGATTTCAA+GGG | - | tig0044793:2533-2552 | Msa1465000:intergenic | 30.0% |
| GATTTGAAGAATTAGGGTTA+GGG | - | tig0044793:2795-2814 | Msa1465000:intergenic | 30.0% | |
| AGGAAGGATTTGAAGAATTA+GGG | - | tig0044793:2801-2820 | Msa1465000:intergenic | 30.0% | |
| AAGGAAGGATTTGAAGAATT+AGG | - | tig0044793:2802-2821 | Msa1465000:intergenic | 30.0% | |
| GTTTCCTCTGTAATAAACAA+AGG | - | tig0044793:2821-2840 | Msa1465000:intergenic | 30.0% | |
| GATAATAACAACTATTCCAG+TGG | + | tig0044793:2898-2917 | Msa1465000:CDS | 30.0% | |
| ! | TTTTCCAGTTGACGTTTTTG+AGG | - | tig0044793:2363-2382 | Msa1465000:intergenic | 35.0% |
| AAAAACGTCAACTGGAAAAC+CGG | + | tig0044793:2364-2383 | Msa1465000:CDS | 35.0% | |
| ! | GTTTGGAATGGAAGATTTCA+AGG | - | tig0044793:2534-2553 | Msa1465000:intergenic | 35.0% |
| AAGAATTAGGGTTAGGGTTA+GGG | - | tig0044793:2789-2808 | Msa1465000:intergenic | 35.0% | |
| GGATTTGAAGAATTAGGGTT+AGG | - | tig0044793:2796-2815 | Msa1465000:intergenic | 35.0% | |
| CCTCTGTAATAAACAAAGGA+AGG | - | tig0044793:2817-2836 | Msa1465000:intergenic | 35.0% | |
| ! | CCTTCCTTTGTTTATTACAG+AGG | + | tig0044793:2814-2833 | Msa1465000:CDS | 35.0% |
| TAGTAATTGTAAGGTGAAGG+TGG | - | tig0044793:2865-2884 | Msa1465000:intergenic | 35.0% | |
| GTGTAGTAATTGTAAGGTGA+AGG | - | tig0044793:2868-2887 | Msa1465000:intergenic | 35.0% | |
| AATAACAACTATTCCAGTGG+CGG | + | tig0044793:2901-2920 | Msa1465000:CDS | 35.0% | |
| ! | TTTTCCAGTTGACGTTTTTG+AGG | - | tig0044793:2363-2382 | Msa1465000:intergenic | 35.0% |
| AAAAACGTCAACTGGAAAAC+CGG | + | tig0044793:2364-2383 | Msa1465000:CDS | 35.0% | |
| ! | GTTTGGAATGGAAGATTTCA+AGG | - | tig0044793:2534-2553 | Msa1465000:intergenic | 35.0% |
| AAGAATTAGGGTTAGGGTTA+GGG | - | tig0044793:2789-2808 | Msa1465000:intergenic | 35.0% | |
| GGATTTGAAGAATTAGGGTT+AGG | - | tig0044793:2796-2815 | Msa1465000:intergenic | 35.0% | |
| CCTCTGTAATAAACAAAGGA+AGG | - | tig0044793:2817-2836 | Msa1465000:intergenic | 35.0% | |
| ! | CCTTCCTTTGTTTATTACAG+AGG | + | tig0044793:2814-2833 | Msa1465000:CDS | 35.0% |
| TAGTAATTGTAAGGTGAAGG+TGG | - | tig0044793:2865-2884 | Msa1465000:intergenic | 35.0% | |
| GTGTAGTAATTGTAAGGTGA+AGG | - | tig0044793:2868-2887 | Msa1465000:intergenic | 35.0% | |
| AATAACAACTATTCCAGTGG+CGG | + | tig0044793:2901-2920 | Msa1465000:CDS | 35.0% | |
| !! | TCGAGATCGATGGATTTTGA+CGG | - | tig0044793:2316-2335 | Msa1422160:intergenic | 40.0% |
| !!! | GTTGACGTTTTTGAGGTGTT+TGG | - | tig0044793:2356-2375 | Msa1422160:intergenic | 40.0% |
| AACACCTCAAAAACGTCAAC+TGG | + | tig0044793:2356-2375 | Msa1465000:CDS | 40.0% | |
| ATGGAAGATTTCAAGGGTGA+GGG | - | tig0044793:2527-2546 | Msa1465000:intergenic | 40.0% | |
| AATGGAAGATTTCAAGGGTG+AGG | - | tig0044793:2528-2547 | Msa1465000:intergenic | 40.0% | |
| TTTAGGTGTATCAGAGGGTT+TGG | - | tig0044793:2551-2570 | Msa1465000:intergenic | 40.0% | |
| ! | TTGAGATGAATTTTCCCCTG+CGG | - | tig0044793:2673-2692 | Msa1465000:intergenic | 40.0% |
| ! | CATCTCAAAATTAGCCTCCT+TGG | + | tig0044793:2685-2704 | Msa1465000:CDS | 40.0% |
| !! | ATTTGTGATATTGGTGGCGA+TGG | - | tig0044793:2727-2746 | Msa1465000:intergenic | 40.0% |
| TAGGGTTAGGAAAAGGGTTA+GGG | - | tig0044793:2771-2790 | Msa1465000:intergenic | 40.0% | |
| TTAGGGTTAGGAAAAGGGTT+AGG | - | tig0044793:2772-2791 | Msa1465000:intergenic | 40.0% | |
| TAGGGTTAGGGTTAGGAAAA+GGG | - | tig0044793:2777-2796 | Msa1465000:intergenic | 40.0% | |
| TTAGGGTTAGGGTTAGGAAA+AGG | - | tig0044793:2778-2797 | Msa1465000:intergenic | 40.0% | |
| GAAGAATTAGGGTTAGGGTT+AGG | - | tig0044793:2790-2809 | Msa1465000:intergenic | 40.0% | |
| TAATTGTAAGGTGAAGGTGG+TGG | - | tig0044793:2862-2881 | Msa1465000:intergenic | 40.0% | |
| AACGAGGACGAATATTCAAG+CGG | - | tig0044793:3042-3061 | Msa1465000:intergenic | 40.0% | |
| ! | GAATGAAGTATGAAGAGCGT+AGG | + | tig0044793:3157-3176 | Msa1465000:CDS | 40.0% |
| !! | TCGAGATCGATGGATTTTGA+CGG | - | tig0044793:2316-2335 | Msa1465000:intergenic | 40.0% |
| !!! | GTTGACGTTTTTGAGGTGTT+TGG | - | tig0044793:2356-2375 | Msa1465000:intergenic | 40.0% |
| AACACCTCAAAAACGTCAAC+TGG | + | tig0044793:2356-2375 | Msa1465000:CDS | 40.0% | |
| ATGGAAGATTTCAAGGGTGA+GGG | - | tig0044793:2527-2546 | Msa1465000:intergenic | 40.0% | |
| AATGGAAGATTTCAAGGGTG+AGG | - | tig0044793:2528-2547 | Msa1465000:intergenic | 40.0% | |
| TTTAGGTGTATCAGAGGGTT+TGG | - | tig0044793:2551-2570 | Msa1465000:intergenic | 40.0% | |
| ! | TTGAGATGAATTTTCCCCTG+CGG | - | tig0044793:2673-2692 | Msa1465000:intergenic | 40.0% |
| ! | CATCTCAAAATTAGCCTCCT+TGG | + | tig0044793:2685-2704 | Msa1465000:CDS | 40.0% |
| !! | ATTTGTGATATTGGTGGCGA+TGG | - | tig0044793:2727-2746 | Msa1465000:intergenic | 40.0% |
| TAGGGTTAGGAAAAGGGTTA+GGG | - | tig0044793:2771-2790 | Msa1465000:intergenic | 40.0% | |
| TTAGGGTTAGGAAAAGGGTT+AGG | - | tig0044793:2772-2791 | Msa1465000:intergenic | 40.0% | |
| TAGGGTTAGGGTTAGGAAAA+GGG | - | tig0044793:2777-2796 | Msa1465000:intergenic | 40.0% | |
| TTAGGGTTAGGGTTAGGAAA+AGG | - | tig0044793:2778-2797 | Msa1465000:intergenic | 40.0% | |
| GAAGAATTAGGGTTAGGGTT+AGG | - | tig0044793:2790-2809 | Msa1465000:intergenic | 40.0% | |
| TAATTGTAAGGTGAAGGTGG+TGG | - | tig0044793:2862-2881 | Msa1465000:intergenic | 40.0% | |
| AACGAGGACGAATATTCAAG+CGG | - | tig0044793:3042-3061 | Msa1465000:intergenic | 40.0% | |
| ! | GAATGAAGTATGAAGAGCGT+AGG | + | tig0044793:3157-3176 | Msa1465000:CDS | 40.0% |
| !! | AGATCGATGGATTTTGACGG+TGG | - | tig0044793:2313-2332 | Msa1422160:intergenic | 45.0% |
| !!! | GACGTTTTTGAGGTGTTTGG+CGG | - | tig0044793:2353-2372 | Msa1422160:intergenic | 45.0% |
| TCAAACCTTACGTCGTCTTC+TGG | + | tig0044793:2392-2411 | Msa1465000:CDS | 45.0% | |
| TGAAACGTTCGTTCCAGACA+GGG | - | tig0044793:2471-2490 | Msa1465000:intergenic | 45.0% | |
| GTGTATCAGAGGGTTTGGAA+TGG | - | tig0044793:2546-2565 | Msa1465000:intergenic | 45.0% | |
| AGGGGTTTAGGTGTATCAGA+GGG | - | tig0044793:2556-2575 | Msa1465000:intergenic | 45.0% | |
| ! | GAAGGTCTTTTAGCGGAAGA+CGG | - | tig0044793:2591-2610 | Msa1465000:intergenic | 45.0% |
| ! | AGGTCAGGAAGGTCTTTTAG+CGG | - | tig0044793:2598-2617 | Msa1465000:intergenic | 45.0% |
| ATTGTGGAGTGATGAAGGTC+AGG | - | tig0044793:2613-2632 | Msa1465000:intergenic | 45.0% | |
| TGACGATTGTGGAGTGATGA+AGG | - | tig0044793:2618-2637 | Msa1465000:intergenic | 45.0% | |
| GGGGAATTTCTTGACGATTG+TGG | - | tig0044793:2629-2648 | Msa1465000:intergenic | 45.0% | |
| TTAGGGTTAGGGTTAGGGTT+AGG | - | tig0044793:2784-2803 | Msa1465000:intergenic | 45.0% | |
| TACTTTCCCGGCTATTATCC+TGG | + | tig0044793:2925-2944 | Msa1465000:CDS | 45.0% | |
| CTTCCAGTACGTTCGAAGAA+AGG | - | tig0044793:2985-3004 | Msa1465000:intergenic | 45.0% | |
| ! | ATTTTACCGCCTTTTGGCCT+CGG | - | tig0044793:3069-3088 | Msa1465000:intergenic | 45.0% |
| AGGCCAAAAGGCGGTAAAAT+GGG | + | tig0044793:3069-3088 | Msa1465000:CDS | 45.0% | |
| ! | AAGCCCATTTTACCGCCTTT+TGG | - | tig0044793:3075-3094 | Msa1465000:intergenic | 45.0% |
| ! | AAAGGCGGTAAAATGGGCTT+AGG | + | tig0044793:3075-3094 | Msa1465000:CDS | 45.0% |
| ! | GTAAAATGGGCTTAGGAGCT+GGG | + | tig0044793:3082-3101 | Msa1465000:CDS | 45.0% |
| ! | AAAGTGATGTTGCTTCTGCG+AGG | + | tig0044793:3196-3215 | Msa1465000:CDS | 45.0% |
| ! | AAGTGATGTTGCTTCTGCGA+GGG | + | tig0044793:3197-3216 | Msa1465000:CDS | 45.0% |
| !! | AGATCGATGGATTTTGACGG+TGG | - | tig0044793:2313-2332 | Msa1465000:intergenic | 45.0% |
| !!! | GACGTTTTTGAGGTGTTTGG+CGG | - | tig0044793:2353-2372 | Msa1465000:intergenic | 45.0% |
| TCAAACCTTACGTCGTCTTC+TGG | + | tig0044793:2392-2411 | Msa1465000:CDS | 45.0% | |
| TGAAACGTTCGTTCCAGACA+GGG | - | tig0044793:2471-2490 | Msa1465000:intergenic | 45.0% | |
| GTGTATCAGAGGGTTTGGAA+TGG | - | tig0044793:2546-2565 | Msa1465000:intergenic | 45.0% | |
| AGGGGTTTAGGTGTATCAGA+GGG | - | tig0044793:2556-2575 | Msa1465000:intergenic | 45.0% | |
| ! | GAAGGTCTTTTAGCGGAAGA+CGG | - | tig0044793:2591-2610 | Msa1465000:intergenic | 45.0% |
| ! | AGGTCAGGAAGGTCTTTTAG+CGG | - | tig0044793:2598-2617 | Msa1465000:intergenic | 45.0% |
| ATTGTGGAGTGATGAAGGTC+AGG | - | tig0044793:2613-2632 | Msa1465000:intergenic | 45.0% | |
| TGACGATTGTGGAGTGATGA+AGG | - | tig0044793:2618-2637 | Msa1465000:intergenic | 45.0% | |
| GGGGAATTTCTTGACGATTG+TGG | - | tig0044793:2629-2648 | Msa1465000:intergenic | 45.0% | |
| TTAGGGTTAGGGTTAGGGTT+AGG | - | tig0044793:2784-2803 | Msa1465000:intergenic | 45.0% | |
| TACTTTCCCGGCTATTATCC+TGG | + | tig0044793:2925-2944 | Msa1465000:CDS | 45.0% | |
| CTTCCAGTACGTTCGAAGAA+AGG | - | tig0044793:2985-3004 | Msa1465000:intergenic | 45.0% | |
| ! | ATTTTACCGCCTTTTGGCCT+CGG | - | tig0044793:3069-3088 | Msa1465000:intergenic | 45.0% |
| AGGCCAAAAGGCGGTAAAAT+GGG | + | tig0044793:3069-3088 | Msa1465000:CDS | 45.0% | |
| ! | AAGCCCATTTTACCGCCTTT+TGG | - | tig0044793:3075-3094 | Msa1465000:intergenic | 45.0% |
| ! | AAAGGCGGTAAAATGGGCTT+AGG | + | tig0044793:3075-3094 | Msa1465000:CDS | 45.0% |
| ! | GTAAAATGGGCTTAGGAGCT+GGG | + | tig0044793:3082-3101 | Msa1465000:CDS | 45.0% |
| ! | AAAGTGATGTTGCTTCTGCG+AGG | + | tig0044793:3196-3215 | Msa1465000:CDS | 45.0% |
| ! | AAGTGATGTTGCTTCTGCGA+GGG | + | tig0044793:3197-3216 | Msa1465000:CDS | 45.0% |
| !! | TCGATGGATTTTGACGGTGG+AGG | - | tig0044793:2310-2329 | Msa1422160:intergenic | 50.0% |
| GATTGTGAGGTCGAGATCGA+TGG | - | tig0044793:2326-2345 | Msa1422160:intergenic | 50.0% | |
| GTTTGGCGGAGATGATTGTG+AGG | - | tig0044793:2339-2358 | Msa1422160:intergenic | 50.0% | |
| ! | GACGTAAGGTTTGAGATCGC+CGG | - | tig0044793:2386-2405 | Msa1465000:intergenic | 50.0% |
| GTTACCGGAATCGTCGGATT+TGG | - | tig0044793:2443-2462 | Msa1465000:intergenic | 50.0% | |
| GAAACGTTCGTTCCAGACAG+GGG | - | tig0044793:2470-2489 | Msa1465000:intergenic | 50.0% | |
| GTGAAACGTTCGTTCCAGAC+AGG | - | tig0044793:2472-2491 | Msa1465000:intergenic | 50.0% | |
| TGAGGGTGGAATCTGGAAGA+GGG | - | tig0044793:2510-2529 | Msa1465000:intergenic | 50.0% | |
| GAAGATTTCAAGGGTGAGGG+TGG | - | tig0044793:2524-2543 | Msa1465000:intergenic | 50.0% | |
| GAGGGGTTTAGGTGTATCAG+AGG | - | tig0044793:2557-2576 | Msa1465000:intergenic | 50.0% | |
| ! | GTCTTTTAGCGGAAGACGGA+GGG | - | tig0044793:2587-2606 | Msa1465000:intergenic | 50.0% |
| TGGAGTGATGAAGGTCAGGA+AGG | - | tig0044793:2609-2628 | Msa1465000:intergenic | 50.0% | |
| !! | TGTGATATTGGTGGCGATGG+CGG | - | tig0044793:2724-2743 | Msa1465000:intergenic | 50.0% |
| !! | TAAGGTGAAGGTGGTGGAGA+AGG | - | tig0044793:2856-2875 | Msa1465000:intergenic | 50.0% |
| TTTCCCGGCTATTATCCTGG+TGG | + | tig0044793:2928-2947 | Msa1465000:CDS | 50.0% | |
| AGCACCACCAGGATAATAGC+CGG | - | tig0044793:2935-2954 | Msa1465000:intergenic | 50.0% | |
| ACTGGAAGTTATGCTGCTGC+TGG | + | tig0044793:2997-3016 | Msa1465000:CDS | 50.0% | |
| GAATATTCAAGCGGCGCAGA+CGG | - | tig0044793:3033-3052 | Msa1465000:intergenic | 50.0% | |
| ATTCGTCCTCGTTTGATCCG+AGG | + | tig0044793:3049-3068 | Msa1465000:CDS | 50.0% | |
| ! | TTTTGGCCTCGGATCAAACG+AGG | - | tig0044793:3058-3077 | Msa1465000:intergenic | 50.0% |
| TCGTTTGATCCGAGGCCAAA+AGG | + | tig0044793:3057-3076 | Msa1465000:CDS | 50.0% | |
| TTTGATCCGAGGCCAAAAGG+CGG | + | tig0044793:3060-3079 | Msa1465000:CDS | 50.0% | |
| GAGGCCAAAAGGCGGTAAAA+TGG | + | tig0044793:3068-3087 | Msa1465000:CDS | 50.0% | |
| ! | GGTAAAATGGGCTTAGGAGC+TGG | + | tig0044793:3081-3100 | Msa1465000:CDS | 50.0% |
| GCTTCTGCGAGGGATGATTA+TGG | + | tig0044793:3207-3226 | Msa1465000:CDS | 50.0% | |
| !! | TCGATGGATTTTGACGGTGG+AGG | - | tig0044793:2310-2329 | Msa1465000:intergenic | 50.0% |
| GATTGTGAGGTCGAGATCGA+TGG | - | tig0044793:2326-2345 | Msa1465000:intergenic | 50.0% | |
| GTTTGGCGGAGATGATTGTG+AGG | - | tig0044793:2339-2358 | Msa1465000:intergenic | 50.0% | |
| ! | GACGTAAGGTTTGAGATCGC+CGG | - | tig0044793:2386-2405 | Msa1465000:intergenic | 50.0% |
| GTTACCGGAATCGTCGGATT+TGG | - | tig0044793:2443-2462 | Msa1465000:intergenic | 50.0% | |
| GAAACGTTCGTTCCAGACAG+GGG | - | tig0044793:2470-2489 | Msa1465000:intergenic | 50.0% | |
| GTGAAACGTTCGTTCCAGAC+AGG | - | tig0044793:2472-2491 | Msa1465000:intergenic | 50.0% | |
| TGAGGGTGGAATCTGGAAGA+GGG | - | tig0044793:2510-2529 | Msa1465000:intergenic | 50.0% | |
| GAAGATTTCAAGGGTGAGGG+TGG | - | tig0044793:2524-2543 | Msa1465000:intergenic | 50.0% | |
| GAGGGGTTTAGGTGTATCAG+AGG | - | tig0044793:2557-2576 | Msa1465000:intergenic | 50.0% | |
| ! | GTCTTTTAGCGGAAGACGGA+GGG | - | tig0044793:2587-2606 | Msa1465000:intergenic | 50.0% |
| TGGAGTGATGAAGGTCAGGA+AGG | - | tig0044793:2609-2628 | Msa1465000:intergenic | 50.0% | |
| !! | TGTGATATTGGTGGCGATGG+CGG | - | tig0044793:2724-2743 | Msa1465000:intergenic | 50.0% |
| !! | TAAGGTGAAGGTGGTGGAGA+AGG | - | tig0044793:2856-2875 | Msa1465000:intergenic | 50.0% |
| TTTCCCGGCTATTATCCTGG+TGG | + | tig0044793:2928-2947 | Msa1465000:CDS | 50.0% | |
| AGCACCACCAGGATAATAGC+CGG | - | tig0044793:2935-2954 | Msa1465000:intergenic | 50.0% | |
| ACTGGAAGTTATGCTGCTGC+TGG | + | tig0044793:2997-3016 | Msa1465000:CDS | 50.0% | |
| GAATATTCAAGCGGCGCAGA+CGG | - | tig0044793:3033-3052 | Msa1465000:intergenic | 50.0% | |
| ATTCGTCCTCGTTTGATCCG+AGG | + | tig0044793:3049-3068 | Msa1465000:CDS | 50.0% | |
| ! | TTTTGGCCTCGGATCAAACG+AGG | - | tig0044793:3058-3077 | Msa1465000:intergenic | 50.0% |
| TCGTTTGATCCGAGGCCAAA+AGG | + | tig0044793:3057-3076 | Msa1465000:CDS | 50.0% | |
| TTTGATCCGAGGCCAAAAGG+CGG | + | tig0044793:3060-3079 | Msa1465000:CDS | 50.0% | |
| GAGGCCAAAAGGCGGTAAAA+TGG | + | tig0044793:3068-3087 | Msa1465000:CDS | 50.0% | |
| ! | GGTAAAATGGGCTTAGGAGC+TGG | + | tig0044793:3081-3100 | Msa1465000:CDS | 50.0% |
| GCTTCTGCGAGGGATGATTA+TGG | + | tig0044793:3207-3226 | Msa1465000:CDS | 50.0% | |
| TCGAGCCAGAAGACGACGTA+AGG | - | tig0044793:2400-2419 | Msa1465000:intergenic | 55.0% | |
| GCCACCAAATCCGACGATTC+CGG | + | tig0044793:2436-2455 | Msa1465000:CDS | 55.0% | |
| ACCGGAATCGTCGGATTTGG+TGG | - | tig0044793:2440-2459 | Msa1465000:intergenic | 55.0% | |
| !! | GGAGGTGTTACCGGAATCGT+CGG | - | tig0044793:2449-2468 | Msa1465000:intergenic | 55.0% |
| CTGGAAGAGGGAGAGAGAGA+GGG | - | tig0044793:2498-2517 | Msa1465000:intergenic | 55.0% | |
| TCTGGAAGAGGGAGAGAGAG+AGG | - | tig0044793:2499-2518 | Msa1465000:intergenic | 55.0% | |
| GTGAGGGTGGAATCTGGAAG+AGG | - | tig0044793:2511-2530 | Msa1465000:intergenic | 55.0% | |
| TCAAGGGTGAGGGTGGAATC+TGG | - | tig0044793:2517-2536 | Msa1465000:intergenic | 55.0% | |
| ! | TTTTAGCGGAAGACGGAGGG+TGG | - | tig0044793:2584-2603 | Msa1465000:intergenic | 55.0% |
| ! | GGTCTTTTAGCGGAAGACGG+AGG | - | tig0044793:2588-2607 | Msa1465000:intergenic | 55.0% |
| ! | TCCAGTGGCGGTTACTTTCC+CGG | + | tig0044793:2913-2932 | Msa1465000:CDS | 55.0% |
| GCACCACCAGGATAATAGCC+GGG | - | tig0044793:2934-2953 | Msa1465000:intergenic | 55.0% | |
| TCGAAGAAAGGCCGTGGATG+CGG | - | tig0044793:2973-2992 | Msa1465000:intergenic | 55.0% | |
| GTACGTTCGAAGAAAGGCCG+TGG | - | tig0044793:2979-2998 | Msa1465000:intergenic | 55.0% | |
| CGGCCTTTCTTCGAACGTAC+TGG | + | tig0044793:2979-2998 | Msa1465000:CDS | 55.0% | |
| !! | GGTGGACTTGCTCTGGAAGA+AGG | + | tig0044793:3135-3154 | Msa1465000:CDS | 55.0% |
| ! | GTATGAAGAGCGTAGGCTCG+CGG | + | tig0044793:3164-3183 | Msa1465000:CDS | 55.0% |
| TCGAGCCAGAAGACGACGTA+AGG | - | tig0044793:2400-2419 | Msa1465000:intergenic | 55.0% | |
| GCCACCAAATCCGACGATTC+CGG | + | tig0044793:2436-2455 | Msa1465000:CDS | 55.0% | |
| ACCGGAATCGTCGGATTTGG+TGG | - | tig0044793:2440-2459 | Msa1465000:intergenic | 55.0% | |
| !! | GGAGGTGTTACCGGAATCGT+CGG | - | tig0044793:2449-2468 | Msa1465000:intergenic | 55.0% |
| CTGGAAGAGGGAGAGAGAGA+GGG | - | tig0044793:2498-2517 | Msa1465000:intergenic | 55.0% | |
| TCTGGAAGAGGGAGAGAGAG+AGG | - | tig0044793:2499-2518 | Msa1465000:intergenic | 55.0% | |
| GTGAGGGTGGAATCTGGAAG+AGG | - | tig0044793:2511-2530 | Msa1465000:intergenic | 55.0% | |
| TCAAGGGTGAGGGTGGAATC+TGG | - | tig0044793:2517-2536 | Msa1465000:intergenic | 55.0% | |
| ! | TTTTAGCGGAAGACGGAGGG+TGG | - | tig0044793:2584-2603 | Msa1465000:intergenic | 55.0% |
| ! | GGTCTTTTAGCGGAAGACGG+AGG | - | tig0044793:2588-2607 | Msa1465000:intergenic | 55.0% |
| ! | TCCAGTGGCGGTTACTTTCC+CGG | + | tig0044793:2913-2932 | Msa1465000:CDS | 55.0% |
| GCACCACCAGGATAATAGCC+GGG | - | tig0044793:2934-2953 | Msa1465000:intergenic | 55.0% | |
| TCGAAGAAAGGCCGTGGATG+CGG | - | tig0044793:2973-2992 | Msa1465000:intergenic | 55.0% | |
| GTACGTTCGAAGAAAGGCCG+TGG | - | tig0044793:2979-2998 | Msa1465000:intergenic | 55.0% | |
| CGGCCTTTCTTCGAACGTAC+TGG | + | tig0044793:2979-2998 | Msa1465000:CDS | 55.0% | |
| !! | GGTGGACTTGCTCTGGAAGA+AGG | + | tig0044793:3135-3154 | Msa1465000:CDS | 55.0% |
| ! | GTATGAAGAGCGTAGGCTCG+CGG | + | tig0044793:3164-3183 | Msa1465000:CDS | 55.0% |
| !! | CGGATTTGGTGGCGAGACGA+CGG | - | tig0044793:2429-2448 | Msa1465000:intergenic | 60.0% |
| !! | CCAGACAGGGGAGGTGTTAC+CGG | - | tig0044793:2458-2477 | Msa1465000:intergenic | 60.0% |
| ACGTTCGTTCCAGACAGGGG+AGG | - | tig0044793:2467-2486 | Msa1465000:intergenic | 60.0% | |
| ATTCCCCGTCGTTCGACCCT+CGG | + | tig0044793:2642-2661 | Msa1465000:CDS | 60.0% | |
| !! | GATATTGGTGGCGATGGCGG+AGG | - | tig0044793:2721-2740 | Msa1465000:intergenic | 60.0% |
| !! | GGTGGTGGATAAGCACCACC+AGG | - | tig0044793:2946-2965 | Msa1465000:intergenic | 60.0% |
| AAGAAAGGCCGTGGATGCGG+CGG | - | tig0044793:2970-2989 | Msa1465000:intergenic | 60.0% | |
| TATGCTGCTGCTGGACCGAG+TGG | + | tig0044793:3006-3025 | Msa1465000:CDS | 60.0% | |
| ! | AATGGGCTTAGGAGCTGGGC+TGG | + | tig0044793:3086-3105 | Msa1465000:CDS | 60.0% |
| !! | TTAGGAGCTGGGCTGGCTGT+TGG | + | tig0044793:3093-3112 | Msa1465000:CDS | 60.0% |
| !! | TGGCTGTTGGTGCTGCTGCT+GGG | + | tig0044793:3106-3125 | Msa1465000:CDS | 60.0% |
| AGAGCGTAGGCTCGCGGATA+TGG | + | tig0044793:3170-3189 | Msa1465000:CDS | 60.0% | |
| !! | CGGATTTGGTGGCGAGACGA+CGG | - | tig0044793:2429-2448 | Msa1465000:intergenic | 60.0% |
| !! | CCAGACAGGGGAGGTGTTAC+CGG | - | tig0044793:2458-2477 | Msa1465000:intergenic | 60.0% |
| ACGTTCGTTCCAGACAGGGG+AGG | - | tig0044793:2467-2486 | Msa1465000:intergenic | 60.0% | |
| ATTCCCCGTCGTTCGACCCT+CGG | + | tig0044793:2642-2661 | Msa1465000:CDS | 60.0% | |
| !! | GATATTGGTGGCGATGGCGG+AGG | - | tig0044793:2721-2740 | Msa1465000:intergenic | 60.0% |
| !! | GGTGGTGGATAAGCACCACC+AGG | - | tig0044793:2946-2965 | Msa1465000:intergenic | 60.0% |
| AAGAAAGGCCGTGGATGCGG+CGG | - | tig0044793:2970-2989 | Msa1465000:intergenic | 60.0% | |
| TATGCTGCTGCTGGACCGAG+TGG | + | tig0044793:3006-3025 | Msa1465000:CDS | 60.0% | |
| ! | AATGGGCTTAGGAGCTGGGC+TGG | + | tig0044793:3086-3105 | Msa1465000:CDS | 60.0% |
| !! | TTAGGAGCTGGGCTGGCTGT+TGG | + | tig0044793:3093-3112 | Msa1465000:CDS | 60.0% |
| !! | TGGCTGTTGGTGCTGCTGCT+GGG | + | tig0044793:3106-3125 | Msa1465000:CDS | 60.0% |
| AGAGCGTAGGCTCGCGGATA+TGG | + | tig0044793:3170-3189 | Msa1465000:CDS | 60.0% | |
| !! | TTGGTGGCGAGACGACGGTC+AGG | - | tig0044793:2424-2443 | Msa1465000:intergenic | 65.0% |
| CCGGTAACACCTCCCCTGTC+TGG | + | tig0044793:2455-2474 | Msa1465000:CDS | 65.0% | |
| AGGGTGGCGACGAGGGGTTT+AGG | - | tig0044793:2568-2587 | Msa1465000:intergenic | 65.0% | |
| AAGACGGAGGGTGGCGACGA+GGG | - | tig0044793:2575-2594 | Msa1465000:intergenic | 65.0% | |
| TTCCCCGTCGTTCGACCCTC+GGG | + | tig0044793:2643-2662 | Msa1465000:CDS | 65.0% | |
| TCGACCCGAGGGTCGAACGA+CGG | - | tig0044793:2650-2669 | Msa1465000:intergenic | 65.0% | |
| !! | ATTGGTGGCGATGGCGGAGG+AGG | - | tig0044793:2718-2737 | Msa1465000:intergenic | 65.0% |
| GCCGGGAAAGTAACCGCCAC+TGG | - | tig0044793:2917-2936 | Msa1465000:intergenic | 65.0% | |
| !! | CTGGCTGTTGGTGCTGCTGC+TGG | + | tig0044793:3105-3124 | Msa1465000:CDS | 65.0% |
| !! | GGCTGTTGGTGCTGCTGCTG+GGG | + | tig0044793:3107-3126 | Msa1465000:CDS | 65.0% |
| !! | TTGGTGGCGAGACGACGGTC+AGG | - | tig0044793:2424-2443 | Msa1465000:intergenic | 65.0% |
| CCGGTAACACCTCCCCTGTC+TGG | + | tig0044793:2455-2474 | Msa1465000:CDS | 65.0% | |
| AGGGTGGCGACGAGGGGTTT+AGG | - | tig0044793:2568-2587 | Msa1465000:intergenic | 65.0% | |
| AAGACGGAGGGTGGCGACGA+GGG | - | tig0044793:2575-2594 | Msa1465000:intergenic | 65.0% | |
| TTCCCCGTCGTTCGACCCTC+GGG | + | tig0044793:2643-2662 | Msa1465000:CDS | 65.0% | |
| TCGACCCGAGGGTCGAACGA+CGG | - | tig0044793:2650-2669 | Msa1465000:intergenic | 65.0% | |
| !! | ATTGGTGGCGATGGCGGAGG+AGG | - | tig0044793:2718-2737 | Msa1465000:intergenic | 65.0% |
| GCCGGGAAAGTAACCGCCAC+TGG | - | tig0044793:2917-2936 | Msa1465000:intergenic | 65.0% | |
| !! | CTGGCTGTTGGTGCTGCTGC+TGG | + | tig0044793:3105-3124 | Msa1465000:CDS | 65.0% |
| !! | GGCTGTTGGTGCTGCTGCTG+GGG | + | tig0044793:3107-3126 | Msa1465000:CDS | 65.0% |
| AGACGGAGGGTGGCGACGAG+GGG | - | tig0044793:2574-2593 | Msa1465000:intergenic | 70.0% | |
| GAAGACGGAGGGTGGCGACG+AGG | - | tig0044793:2576-2595 | Msa1465000:intergenic | 70.0% | |
| GACCCGAGGGTCGAACGACG+GGG | - | tig0044793:2648-2667 | Msa1465000:intergenic | 70.0% | |
| CGACCCGAGGGTCGAACGAC+GGG | - | tig0044793:2649-2668 | Msa1465000:intergenic | 70.0% | |
| TTCCCCTGCGGTCGACCCGA+GGG | - | tig0044793:2661-2680 | Msa1465000:intergenic | 70.0% | |
| TTTCCCCTGCGGTCGACCCG+AGG | - | tig0044793:2662-2681 | Msa1465000:intergenic | 70.0% | |
| GAGGAGGAGAGCGGCCAAGG+AGG | - | tig0044793:2702-2721 | Msa1465000:intergenic | 70.0% | |
| !! | GCGATGGCGGAGGAGGAGAG+CGG | - | tig0044793:2711-2730 | Msa1465000:intergenic | 70.0% |
| CACCACCACCGCCGCATCCA+CGG | + | tig0044793:2959-2978 | Msa1465000:CDS | 70.0% | |
| AAAGGCCGTGGATGCGGCGG+TGG | - | tig0044793:2967-2986 | Msa1465000:intergenic | 70.0% | |
| AGCGGCGCAGACGGTCCACT+CGG | - | tig0044793:3024-3043 | Msa1465000:intergenic | 70.0% | |
| ! | GGCGCTGGGTGGACTTGCTC+TGG | + | tig0044793:3128-3147 | Msa1465000:CDS | 70.0% |
| AGACGGAGGGTGGCGACGAG+GGG | - | tig0044793:2574-2593 | Msa1465000:intergenic | 70.0% | |
| GAAGACGGAGGGTGGCGACG+AGG | - | tig0044793:2576-2595 | Msa1465000:intergenic | 70.0% | |
| GACCCGAGGGTCGAACGACG+GGG | - | tig0044793:2648-2667 | Msa1465000:intergenic | 70.0% | |
| CGACCCGAGGGTCGAACGAC+GGG | - | tig0044793:2649-2668 | Msa1465000:intergenic | 70.0% | |
| TTCCCCTGCGGTCGACCCGA+GGG | - | tig0044793:2661-2680 | Msa1465000:intergenic | 70.0% | |
| TTTCCCCTGCGGTCGACCCG+AGG | - | tig0044793:2662-2681 | Msa1465000:intergenic | 70.0% | |
| GAGGAGGAGAGCGGCCAAGG+AGG | - | tig0044793:2702-2721 | Msa1465000:intergenic | 70.0% | |
| !! | GCGATGGCGGAGGAGGAGAG+CGG | - | tig0044793:2711-2730 | Msa1465000:intergenic | 70.0% |
| CACCACCACCGCCGCATCCA+CGG | + | tig0044793:2959-2978 | Msa1465000:CDS | 70.0% | |
| AAAGGCCGTGGATGCGGCGG+TGG | - | tig0044793:2967-2986 | Msa1465000:intergenic | 70.0% | |
| AGCGGCGCAGACGGTCCACT+CGG | - | tig0044793:3024-3043 | Msa1465000:intergenic | 70.0% | |
| ! | GGCGCTGGGTGGACTTGCTC+TGG | + | tig0044793:3128-3147 | Msa1465000:CDS | 70.0% |
| TCGACCCTCGGGTCGACCGC+AGG | + | tig0044793:2654-2673 | Msa1465000:CDS | 75.0% | |
| CGACCCTCGGGTCGACCGCA+GGG | + | tig0044793:2655-2674 | Msa1465000:CDS | 75.0% | |
| GACCCTCGGGTCGACCGCAG+GGG | + | tig0044793:2656-2675 | Msa1465000:CDS | 75.0% | |
| GCGGAGGAGGAGAGCGGCCA+AGG | - | tig0044793:2705-2724 | Msa1465000:intergenic | 75.0% | |
| ! | CGTGGATGCGGCGGTGGTGG+TGG | - | tig0044793:2961-2980 | Msa1465000:intergenic | 75.0% |
| !! | TGGTGCTGCTGCTGGGGCGC+TGG | + | tig0044793:3113-3132 | Msa1465000:CDS | 75.0% |
| !! | GGTGCTGCTGCTGGGGCGCT+GGG | + | tig0044793:3114-3133 | Msa1465000:CDS | 75.0% |
| TCGACCCTCGGGTCGACCGC+AGG | + | tig0044793:2654-2673 | Msa1465000:CDS | 75.0% | |
| CGACCCTCGGGTCGACCGCA+GGG | + | tig0044793:2655-2674 | Msa1465000:CDS | 75.0% | |
| GACCCTCGGGTCGACCGCAG+GGG | + | tig0044793:2656-2675 | Msa1465000:CDS | 75.0% | |
| GCGGAGGAGGAGAGCGGCCA+AGG | - | tig0044793:2705-2724 | Msa1465000:intergenic | 75.0% | |
| ! | CGTGGATGCGGCGGTGGTGG+TGG | - | tig0044793:2961-2980 | Msa1465000:intergenic | 75.0% |
| !! | TGGTGCTGCTGCTGGGGCGC+TGG | + | tig0044793:3113-3132 | Msa1465000:CDS | 75.0% |
| !! | GGTGCTGCTGCTGGGGCGCT+GGG | + | tig0044793:3114-3133 | Msa1465000:CDS | 75.0% |
| ! | GGCCGTGGATGCGGCGGTGG+TGG | - | tig0044793:2964-2983 | Msa1465000:intergenic | 80.0% |
| !!! | GCTGCTGCTGGGGCGCTGGG+TGG | + | tig0044793:3117-3136 | Msa1465000:CDS | 80.0% |
| ! | GGCCGTGGATGCGGCGGTGG+TGG | - | tig0044793:2964-2983 | Msa1465000:intergenic | 80.0% |
| !!! | GCTGCTGCTGGGGCGCTGGG+TGG | + | tig0044793:3117-3136 | Msa1465000:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044793 | gene | 2292 | 3254 | 2292 | ID=Msa1465000;Name=Msa1465000 |
| tig0044793 | mRNA | 2292 | 3254 | 2292 | ID=Msa1465000-mRNA-1;Parent=Msa1465000;Name=Msa1465000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|320 |
| tig0044793 | exon | 2292 | 3254 | 2292 | ID=Msa1465000-mRNA-1:exon:24654;Parent=Msa1465000-mRNA-1 |
| tig0044793 | CDS | 2292 | 3254 | 2292 | ID=Msa1465000-mRNA-1:cds;Parent=Msa1465000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
