AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336040 MtrunA17_Chr2g0321701 96.739 368 9 2 1 367 1 366 0.0 710
Msa0336040 MtrunA17_Chr7g0266741 61.633 245 85 6 1 244 1 237 5.72e-97 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336040 AT1G08370.1 61.702 376 124 7 1 366 1 366 3.45e-144 413

Find 139 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATAACAATTTGTAAAAT+TGG 0.149087 2_4:-55305952 Msa0336040:three_prime_UTR
TCTGCTACACTTTCTTCTTC+TGG 0.159230 2_4:-55306790 Msa0336040:CDS
TGAACCCTAGAATTGAAAAT+TGG 0.165117 2_4:+55310976 None:intergenic
AGAATTGAAAATTGGGGATT+AGG 0.231863 2_4:+55310984 None:intergenic
GTTGGCATAAGCAGAAAATT+TGG 0.247413 2_4:-55309249 Msa0336040:intron
GGACAATCAATTCATTGATA+TGG 0.252052 2_4:-55306126 Msa0336040:CDS
CTGCTACACTTTCTTCTTCT+GGG 0.262231 2_4:-55306789 Msa0336040:CDS
CTCAAGAAGTGAATGGTATT+TGG 0.265191 2_4:-55309160 Msa0336040:CDS
GAATTGAAAATTGGGGATTA+GGG 0.310652 2_4:+55310985 None:intergenic
TGGGGATTAGGGTTAGGGTT+AGG 0.310683 2_4:+55310996 None:intergenic
TGCTCTTCTGGTGCTCGTTC+AGG 0.312100 2_4:-55306404 Msa0336040:intron
GGTCCAGATGAGTGGTTATA+GGG 0.322140 2_4:-55305808 Msa0336040:three_prime_UTR
AAAGGTCCGAGATGCTCTTC+TGG 0.324060 2_4:-55306416 Msa0336040:CDS
TCGTTTATTGCAGGCGGCTA+TGG 0.334449 2_4:-55306863 Msa0336040:intron
GTCAGTATATATAGTTGATA+TGG 0.340044 2_4:+55305854 None:intergenic
AGGTCCAGATGAGTGGTTAT+AGG 0.353308 2_4:-55305809 Msa0336040:three_prime_UTR
TTCTGAGACATTGTTGCGTT+AGG 0.354119 2_4:+55310950 None:intergenic
CAAGGTGCCTCCGAAGTTAA+AGG 0.354297 2_4:-55308573 Msa0336040:CDS
ATCACAATAAACTGAAATCT+TGG 0.354748 2_4:+55310526 None:intergenic
GGGGATTAGGGTTAGGGTTA+GGG 0.354848 2_4:+55310997 None:intergenic
ACCGAAACATTTAAAAGTTT+AGG 0.354885 2_4:+55305973 None:intergenic
GAAAATTGGGGATTAGGGTT+AGG 0.356060 2_4:+55310990 None:intergenic
TGAGAAGCTTAGTGCTTTGT+TGG 0.358743 2_4:+55310903 None:intergenic
GGATTTCGAGTATGAAGTTC+AGG 0.364421 2_4:-55309210 Msa0336040:CDS
GAACCCTAGAATTGAAAATT+GGG 0.367339 2_4:+55310977 None:intergenic
GATCTCTCTTTGTTGTTAAG+AGG 0.370391 2_4:-55310678 Msa0336040:intron
GTGCTTTGTTGGTCGAGATT+TGG 0.371049 2_4:+55310914 None:intergenic
GGTGGAGTTGGAGGTGGAAA+TGG 0.371979 2_4:+55306493 None:intergenic
TTGCAGTGAGTTTGAGGAAC+TGG 0.375437 2_4:-55307773 Msa0336040:intron
GCAAGTGAAGGTGGTGGAGT+TGG 0.385923 2_4:+55306481 None:intergenic
TGGACTCAGGAGCATCATGC+TGG 0.387575 2_4:+55306686 None:intergenic
CATTTATTGCAGTGAGTTTG+AGG 0.395892 2_4:-55307779 Msa0336040:intron
TTTATAAAGGATGGATCATC+AGG 0.396436 2_4:+55307673 None:intergenic
TCTCTAGAAATAGCTGGGTT+TGG 0.396689 2_4:+55306439 None:intergenic
GGAAACTAGCAAGATCAAAA+TGG 0.406597 2_4:+55305913 None:intergenic
TACACTGAAGAAATTTATAA+AGG 0.413641 2_4:+55307660 None:intergenic
GTACAAGTACAACGACCTTA+TGG 0.413886 2_4:-55306532 Msa0336040:CDS
TTGCAGGCGGCTATGGGTAT+CGG 0.417327 2_4:-55306856 Msa0336040:intron
AAGGTTGGCAGTGGCCCAAC+AGG 0.419285 2_4:+55306748 None:intergenic
GTGATGAATCGTCGCAATAC+TGG 0.422666 2_4:-55310508 Msa0336040:intron
TTAGGGTTAGGGTTAGGGTT+GGG 0.422672 2_4:+55311002 None:intergenic
AAAATTGGGGATTAGGGTTA+GGG 0.424737 2_4:+55310991 None:intergenic
GCATTTCTATACAATAGATA+TGG 0.429283 2_4:+55309185 None:intergenic
TGTGGCTCGGCTGCTGCTGT+TGG 0.433262 2_4:+55306666 None:intergenic
AAGTGGAGGGGCAGTAGGTA+TGG 0.435273 2_4:+55306570 None:intergenic
TCTGAGACATTGTTGCGTTA+GGG 0.437381 2_4:+55310951 None:intergenic
CGTTTATTGCAGGCGGCTAT+GGG 0.438250 2_4:-55306862 Msa0336040:intron
CCCAGCTATTTCTAGAGAAA+AGG 0.446855 2_4:-55306434 Msa0336040:CDS
GTAGATGAGACCTTTAACTT+CGG 0.449889 2_4:+55308563 None:intergenic
ACTCATGCTGCTACACCTGT+TGG 0.450388 2_4:-55306763 Msa0336040:CDS
TGCAGGCGGCTATGGGTATC+GGG 0.455446 2_4:-55306855 Msa0336040:intron
GTTTGGAAGGGGAGAAGAAA+CGG 0.465407 2_4:+55306456 None:intergenic
AGTGAAGGTGGTGGAGTTGG+AGG 0.465872 2_4:+55306484 None:intergenic
GAAGGTGGTGGAGTTGGAGG+TGG 0.470507 2_4:+55306487 None:intergenic
CTCATGCTGCTACACCTGTT+GGG 0.470653 2_4:-55306762 Msa0336040:CDS
AGAAGGCTTCACAAGATTTG+TGG 0.471767 2_4:+55306648 None:intergenic
TTTGGAAGGGGAGAAGAAAC+GGG 0.474369 2_4:+55306457 None:intergenic
GGATGAAGTGGAGGGGCAGT+AGG 0.474418 2_4:+55306565 None:intergenic
TCATCATTGCAGCAGAAGAA+AGG 0.475545 2_4:+55306611 None:intergenic
CGGCTGCTGCTGTTGGACTC+AGG 0.475688 2_4:+55306673 None:intergenic
GCCCCTCCACTTCATCCTAC+TGG 0.476559 2_4:-55306559 Msa0336040:CDS
CACCCCTATAACCACTCATC+TGG 0.476910 2_4:+55305805 None:intergenic
CATCATTGCAGCAGAAGAAA+GGG 0.478689 2_4:+55306612 None:intergenic
TAGAAATAGCTGGGTTTGGA+AGG 0.479374 2_4:+55306443 None:intergenic
AAATTTGGTGGAAAACCTCC+TGG 0.485123 2_4:-55309234 Msa0336040:CDS
ATTAGGGTTAGGGTTAGGGT+TGG 0.487075 2_4:+55311001 None:intergenic
CTGAAGAAATTTATAAAGGA+TGG 0.488509 2_4:+55307664 None:intergenic
ACTGGAAGCAGTACCAACTA+TGG 0.489454 2_4:-55307755 Msa0336040:CDS
AAAACTGAACTATGACATAC+AGG 0.503454 2_4:+55305892 None:intergenic
CAGAGTCGTAAGGATGTTGA+AGG 0.503957 2_4:-55310700 Msa0336040:CDS
GGAGTAGATGTTGGAAGAGA+TGG 0.504565 2_4:+55306718 None:intergenic
ATCAGGAACATCAGCTACAT+TGG 0.504995 2_4:+55307690 None:intergenic
TAACATCGATCTCAGCCAAT+GGG 0.512566 2_4:-55310801 Msa0336040:intron
GCTTCACAAGATTTGTGGCT+CGG 0.516612 2_4:+55306653 None:intergenic
GTGTTTAATTATCAACTCAC+TGG 0.517779 2_4:-55306058 Msa0336040:three_prime_UTR
CAACGAAAGGGTCAATTCGT+TGG 0.524030 2_4:+55310867 None:intergenic
GGACTCAGGAGCATCATGCT+GGG 0.525944 2_4:+55306687 None:intergenic
AGTGTAGCAGAAGACTGATA+AGG 0.527501 2_4:+55306802 None:intergenic
AAGAAGAAGATGATGAAAGA+CGG 0.528548 2_4:+55311029 None:intergenic
GGTGGAAATGGCTGTAGCAT+TGG 0.536920 2_4:+55306505 None:intergenic
GAAATAGCTGGGTTTGGAAG+GGG 0.537359 2_4:+55306445 None:intergenic
AGAGATGGTATCTGCAAGGT+TGG 0.539591 2_4:+55306733 None:intergenic
CCATCCATGACTGCCATAGT+TGG 0.543119 2_4:+55307742 None:intergenic
TGAGAATTTCCTCAACGAAA+GGG 0.543518 2_4:+55310855 None:intergenic
TGTAGCATTGGAGTACCATA+AGG 0.543996 2_4:+55306517 None:intergenic
GGTGTAAGCGGAGTAGATGT+TGG 0.546568 2_4:+55306709 None:intergenic
CTTTAACTTCGGAGGCACCT+TGG 0.547820 2_4:+55308574 None:intergenic
AGAAGACTGATAAGGTTGTC+CGG 0.549406 2_4:+55306810 None:intergenic
TTTAGGACATGATTAAAGCC+TGG 0.550610 2_4:+55305990 None:intergenic
AACCCTAGAATTGAAAATTG+GGG 0.551212 2_4:+55310978 None:intergenic
GATGAGACCTTTAACTTCGG+AGG 0.553698 2_4:+55308566 None:intergenic
GAGTGGTTATAGGGGTGCTA+AGG 0.554678 2_4:-55305799 Msa0336040:three_prime_UTR
GGTATCTGCAAGGTTGGCAG+TGG 0.554970 2_4:+55306739 None:intergenic
ATGAGAATTTCCTCAACGAA+AGG 0.557425 2_4:+55310854 None:intergenic
TGCAATGGAAAATGAAATGC+AGG 0.558328 2_4:+55311060 None:intergenic
AATGCTGCTCAAGAAGTGAA+TGG 0.565199 2_4:-55309167 Msa0336040:CDS
AGAAATAGCTGGGTTTGGAA+GGG 0.568715 2_4:+55306444 None:intergenic
GGCATAAGCAGAAAATTTGG+TGG 0.569335 2_4:-55309246 Msa0336040:intron
CTATATATACTGACATAACA+TGG 0.570626 2_4:-55305845 Msa0336040:three_prime_UTR
ATATACTGACATAACATGGC+AGG 0.574574 2_4:-55305841 Msa0336040:three_prime_UTR
ACTTCAAATGCTCATATCAC+CGG 0.575143 2_4:-55306829 Msa0336040:CDS
GTTGATGATGATGGCTCAAG+AGG 0.578483 2_4:+55307718 None:intergenic
GTAGGTATGGATGAAGACAC+GGG 0.580863 2_4:+55306583 None:intergenic
ACGAATTGACCCTTTCGTTG+AGG 0.585086 2_4:-55310864 Msa0336040:CDS
ACAGTACCAGTAGGATGAAG+TGG 0.589976 2_4:+55306553 None:intergenic
AGTACCAACTATGGCAGTCA+TGG 0.591187 2_4:-55307746 Msa0336040:CDS
ACGGGAGCAAGTGAAGGTGG+TGG 0.592881 2_4:+55306475 None:intergenic
TTAACATCGATCTCAGCCAA+TGG 0.599690 2_4:-55310802 Msa0336040:CDS
GCATCATGCTGGGGTGTAAG+CGG 0.600785 2_4:+55306697 None:intergenic
AACATGGCAGGAAATGATGA+AGG 0.602059 2_4:-55305829 Msa0336040:three_prime_UTR
AATTTGGTGGAAAACCTCCT+GGG 0.602967 2_4:-55309233 Msa0336040:CDS
GACTCAGGAGCATCATGCTG+GGG 0.604546 2_4:+55306688 None:intergenic
GAAACGGGAGCAAGTGAAGG+TGG 0.605311 2_4:+55306472 None:intergenic
CCAACTATGGCAGTCATGGA+TGG 0.605321 2_4:-55307742 Msa0336040:CDS
GTCCAGATGAGTGGTTATAG+GGG 0.606920 2_4:-55305807 Msa0336040:three_prime_UTR
ACCAGTAGGATGAAGTGGAG+GGG 0.607968 2_4:+55306558 None:intergenic
TAATGCTCGCGAATGTGAAG+AGG 0.613598 2_4:-55309132 Msa0336040:CDS
CGAGCACCAGAAGAGCATCT+CGG 0.613645 2_4:+55306410 None:intergenic
TACCAGTAGGATGAAGTGGA+GGG 0.613698 2_4:+55306557 None:intergenic
TAAAGGTCTCATCTACAAAG+AGG 0.614588 2_4:-55308556 Msa0336040:intron
ACAGGTGTAGCAGCATGAGT+TGG 0.617968 2_4:+55306766 None:intergenic
TTGGAAGTAGTTGATGATGA+TGG 0.619350 2_4:+55307709 None:intergenic
ATGATGAAGGTCCAGATGAG+TGG 0.632945 2_4:-55305816 Msa0336040:three_prime_UTR
GAAGAAACGGGAGCAAGTGA+AGG 0.633795 2_4:+55306469 None:intergenic
AGTAGGTATGGATGAAGACA+CGG 0.634463 2_4:+55306582 None:intergenic
ATTTGGTGGAAAACCTCCTG+GGG 0.636956 2_4:-55309232 Msa0336040:CDS
AAGACGGAAAGAGAGTGCAA+TGG 0.637967 2_4:+55311045 None:intergenic
GTACCAGTAGGATGAAGTGG+AGG 0.640592 2_4:+55306556 None:intergenic
GATTCTTAATGCATATGCCA+AGG 0.648448 2_4:-55308591 Msa0336040:CDS
AACGCAACAATGTCTCAGAA+CGG 0.658570 2_4:-55310947 Msa0336040:exon
ATCATTGCAGCAGAAGAAAG+GGG 0.660388 2_4:+55306613 None:intergenic
TGTACTTGTACAGTACCAGT+AGG 0.670268 2_4:+55306544 None:intergenic
CATCAATCATGACTTTCGAG+AGG 0.693121 2_4:-55306080 Msa0336040:exon
ATTGCAGCAGAAGAAAGGGG+AGG 0.717430 2_4:+55306616 None:intergenic
TTTGGTGGAAAACCTCCTGG+GGG 0.721595 2_4:-55309231 Msa0336040:CDS
TGGAAGAGATGGTATCTGCA+AGG 0.725008 2_4:+55306729 None:intergenic
TAGGTATGGATGAAGACACG+GGG 0.739412 2_4:+55306584 None:intergenic
AGGTATGGATGAAGACACGG+GGG 0.768571 2_4:+55306585 None:intergenic
GGTATGGATGAAGACACGGG+GGG 0.779869 2_4:+55306586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTGGTTTTTTTTAAT+GGG - chr2_4:55306023-55306042 Msa0336040:three_prime_UTR 10.0%
!!! TTAAATTTTCTTATTTGATT+TGG - chr2_4:55306237-55306256 Msa0336040:intron 10.0%
!!! TAATAATATATTTTACAGTT+AGG - chr2_4:55306692-55306711 Msa0336040:CDS 10.0%
!!! TCTTTTATACTTAAATTTAT+AGG - chr2_4:55306721-55306740 Msa0336040:CDS 10.0%
!!! AGTTTTTCAATTTTAAAAAT+AGG + chr2_4:55307009-55307028 None:intergenic 10.0%
!! GTCAATAATTAAATATAAAA+AGG + chr2_4:55307135-55307154 None:intergenic 10.0%
!!! TTTTTTTTTCTTTTAATATG+GGG - chr2_4:55309320-55309339 Msa0336040:intron 10.0%
!!! TCACAATATTTTTTTTTTTT+TGG - chr2_4:55310331-55310350 Msa0336040:intron 10.0%
!!! TGTATTTTATTAAATTGTTA+TGG - chr2_4:55310921-55310940 Msa0336040:CDS 10.0%
!!! GAAATTTTGGTTTTTTTTAA+TGG - chr2_4:55306022-55306041 Msa0336040:three_prime_UTR 15.0%
!!! AATTTTGGTTTTTTTTAATG+GGG - chr2_4:55306024-55306043 Msa0336040:three_prime_UTR 15.0%
!!! TTTTTAATTGAGGTTAATTT+TGG - chr2_4:55306090-55306109 Msa0336040:exon 15.0%
!!! AAATTTATAGGATTTGTTTT+AGG - chr2_4:55306733-55306752 Msa0336040:CDS 15.0%
!!! TGAAAAAAAAAGCTAATTTT+AGG - chr2_4:55306936-55306955 Msa0336040:intron 15.0%
!!! GAAAAAAAAAGCTAATTTTA+GGG - chr2_4:55306937-55306956 Msa0336040:intron 15.0%
!!! TCAATATTGATATTTTATTG+TGG - chr2_4:55307688-55307707 Msa0336040:CDS 15.0%
!!! TATTTGTTAGAATTTTAGAA+AGG - chr2_4:55307872-55307891 Msa0336040:intron 15.0%
!!! AAAGTACAATTATTTCTTTT+AGG - chr2_4:55307901-55307920 Msa0336040:intron 15.0%
!!! AAGTACAATTATTTCTTTTA+GGG - chr2_4:55307902-55307921 Msa0336040:intron 15.0%
!! AGCTAAGAAATATAATAATA+TGG + chr2_4:55308204-55308223 None:intergenic 15.0%
!!! TTTGTTTCAAATAATTTGTT+AGG - chr2_4:55309060-55309079 Msa0336040:intron 15.0%
!!! GAAAATATTTTACATGAATA+TGG + chr2_4:55309207-55309226 None:intergenic 15.0%
!! GAAGAATTAAAAATTGTATT+TGG + chr2_4:55309513-55309532 None:intergenic 15.0%
!!! ATTTTGAATTGAAATTTCAT+TGG - chr2_4:55309597-55309616 Msa0336040:intron 15.0%
!!! TTTCTAATTTCTCTATTTTT+TGG - chr2_4:55310516-55310535 Msa0336040:CDS 15.0%
!! AGAGAGAAAATACAAAAAAA+GGG + chr2_4:55305914-55305933 None:intergenic 20.0%
!!! ATTGATTTAAGTGGTTTAAT+TGG - chr2_4:55306060-55306079 Msa0336040:three_prime_UTR 20.0%
!! TTGATTTAAGTGGTTTAATT+GGG - chr2_4:55306061-55306080 Msa0336040:three_prime_UTR 20.0%
!!! TATCACATTTTCTGTTAATA+TGG - chr2_4:55306541-55306560 Msa0336040:CDS 20.0%
!!! TGTATAATTGTGGTTTTTAT+AGG + chr2_4:55306855-55306874 None:intergenic 20.0%
!!! TAGCTTTTTTTTTCATCTAT+TGG + chr2_4:55306931-55306950 None:intergenic 20.0%
!! AAATTGAAAAACTGAATAGT+TGG - chr2_4:55307016-55307035 Msa0336040:intron 20.0%
!! CATAAAAATTTAAAAGGGAA+TGG + chr2_4:55307105-55307124 None:intergenic 20.0%
!! TGTCGCATAAAAATTTAAAA+GGG + chr2_4:55307110-55307129 None:intergenic 20.0%
!! ATGTCGCATAAAAATTTAAA+AGG + chr2_4:55307111-55307130 None:intergenic 20.0%
!!! TGAAAATATACTTTTGTGAT+TGG - chr2_4:55307345-55307364 Msa0336040:intron 20.0%
!! ACAAAGATTAAATACATACA+TGG + chr2_4:55307401-55307420 None:intergenic 20.0%
!! TATTTAATCTTTGTCATTGT+TGG - chr2_4:55307407-55307426 Msa0336040:intron 20.0%
!!! TCTGATTATTTATTTTTTGC+AGG + chr2_4:55307733-55307752 None:intergenic 20.0%
!! TATATACATTCACTTATGTT+TGG - chr2_4:55308049-55308068 Msa0336040:intron 20.0%
!!! GTTGTTGTATAATGTTATTT+TGG - chr2_4:55308491-55308510 Msa0336040:intron 20.0%
!!! TGTATAATGTTATTTTGGTT+TGG - chr2_4:55308496-55308515 Msa0336040:intron 20.0%
!!! TATTTCTGAATATCAAAGAT+GGG + chr2_4:55308629-55308648 None:intergenic 20.0%
!!! ATATTTCTGAATATCAAAGA+TGG + chr2_4:55308630-55308649 None:intergenic 20.0%
!! TCTTTGATATTCAGAAATAT+TGG - chr2_4:55308630-55308649 Msa0336040:intron 20.0%
!!! TTTTTTCTAAAGACAAAATG+AGG + chr2_4:55308743-55308762 None:intergenic 20.0%
!! TACACTGAAGAAATTTATAA+AGG + chr2_4:55309017-55309036 None:intergenic 20.0%
!!! TTTCAAATAATTTGTTAGGA+CGG - chr2_4:55309064-55309083 Msa0336040:intron 20.0%
!! ATAGAAAATGAAAGGAAAAA+AGG + chr2_4:55309090-55309109 None:intergenic 20.0%
!! TGGTTAAAAATTAAAAAACG+AGG + chr2_4:55309187-55309206 None:intergenic 20.0%
!! TTATTGATGTTAGAGAATAA+AGG - chr2_4:55309253-55309272 Msa0336040:intron 20.0%
!!! TAGAAAAAGTGTGTAAAAAA+TGG + chr2_4:55309627-55309646 None:intergenic 20.0%
!! AATAATATTAAACGACTGTT+TGG - chr2_4:55310412-55310431 Msa0336040:intron 20.0%
!! ATAATATTAAACGACTGTTT+GGG - chr2_4:55310413-55310432 Msa0336040:intron 20.0%
!!! ATATTTTATGATCCTTATCA+AGG - chr2_4:55310444-55310463 Msa0336040:intron 20.0%
!!! TTACATTTTCTAGAAGTTTT+AGG - chr2_4:55310661-55310680 Msa0336040:intron 20.0%
!!! TCCTAAACTTTTAAATGTTT+CGG - chr2_4:55310700-55310719 Msa0336040:CDS 20.0%
!! GTCATAACAATTTGTAAAAT+TGG - chr2_4:55310722-55310741 Msa0336040:intron 20.0%
!!! TTTCATTTTTCAACAAAACA+TGG - chr2_4:55310953-55310972 Msa0336040:exon 20.0%
! GAGAGAAAATACAAAAAAAG+GGG + chr2_4:55305913-55305932 None:intergenic 25.0%
! GAGAGAGAAAATACAAAAAA+AGG + chr2_4:55305915-55305934 None:intergenic 25.0%
!!! TGTTAAGAGGTTTGAAATTT+TGG - chr2_4:55306009-55306028 Msa0336040:three_prime_UTR 25.0%
!!! TTTTTTTTAATGGGGTTGAT+GGG - chr2_4:55306032-55306051 Msa0336040:three_prime_UTR 25.0%
!!! TGGGTTTTAATTGATTTAAG+TGG - chr2_4:55306051-55306070 Msa0336040:three_prime_UTR 25.0%
!!! TGGGAATTTGTTTTTAATTG+AGG - chr2_4:55306080-55306099 Msa0336040:exon 25.0%
! ATCACAATAAACTGAAATCT+TGG + chr2_4:55306151-55306170 None:intergenic 25.0%
! CTAGTTTACTAATAATCCAA+TGG + chr2_4:55306300-55306319 None:intergenic 25.0%
! TTATTAGTAAACTAGACTAC+AGG - chr2_4:55306305-55306324 Msa0336040:intron 25.0%
! ATGTAGTACAAATCATATAG+CGG + chr2_4:55306380-55306399 None:intergenic 25.0%
! AGTATATTGTGAAACAATAG+TGG - chr2_4:55306400-55306419 Msa0336040:intron 25.0%
!!! TATAGGATTTGTTTTAGGTT+TGG - chr2_4:55306738-55306757 Msa0336040:CDS 25.0%
!!! TATATCATAGTGGATTTTGA+TGG - chr2_4:55306825-55306844 Msa0336040:CDS 25.0%
!!! TTTTAAAAATAGGTCATGTC+TGG + chr2_4:55306999-55307018 None:intergenic 25.0%
!!! GTGTTGTAGATATTGTTTTA+AGG - chr2_4:55307321-55307340 Msa0336040:intron 25.0%
!! AAATATACTTTTGTGATTGG+TGG - chr2_4:55307348-55307367 Msa0336040:intron 25.0%
! TAAATACATACATGGACATA+GGG + chr2_4:55307393-55307412 None:intergenic 25.0%
! TTAAATACATACATGGACAT+AGG + chr2_4:55307394-55307413 None:intergenic 25.0%
! GCATTTCTATACAATAGATA+TGG + chr2_4:55307492-55307511 None:intergenic 25.0%
! TGTTTCACTTATTTGAGAAT+AGG - chr2_4:55307649-55307668 Msa0336040:intron 25.0%
! TATCAATATTGATGAATGCA+AGG + chr2_4:55307680-55307699 None:intergenic 25.0%
!!! TATTTTTTGCAGGTTTTACA+AGG + chr2_4:55307723-55307742 None:intergenic 25.0%
! TATTTAATTAGTGGTGACTT+TGG - chr2_4:55307950-55307969 Msa0336040:intron 25.0%
! TCATGTTATTCTACTTCTAT+GGG - chr2_4:55308360-55308379 Msa0336040:intron 25.0%
!!! ATGTTATTTTGGTTTGGAAA+TGG - chr2_4:55308502-55308521 Msa0336040:intron 25.0%
!!! TGTTATTTTGGTTTGGAAAT+GGG - chr2_4:55308503-55308522 Msa0336040:intron 25.0%
!! TGATGTTGAAATCTTTTGAT+GGG + chr2_4:55308775-55308794 None:intergenic 25.0%
!! TTGATGTTGAAATCTTTTGA+TGG + chr2_4:55308776-55308795 None:intergenic 25.0%
! CTGAAGAAATTTATAAAGGA+TGG + chr2_4:55309013-55309032 None:intergenic 25.0%
! AAGACAGTATAGAAAATGAA+AGG + chr2_4:55309098-55309117 None:intergenic 25.0%
!! TTTTCTATACTGTCTTGAAA+TGG - chr2_4:55309102-55309121 Msa0336040:intron 25.0%
!! TTTTTCTTTTAATATGGGGA+AGG - chr2_4:55309324-55309343 Msa0336040:intron 25.0%
!! TTTTCTTTTAATATGGGGAA+GGG - chr2_4:55309325-55309344 Msa0336040:intron 25.0%
!! TATTTGGAATTAATCCTAGT+CGG + chr2_4:55309497-55309516 None:intergenic 25.0%
! AATGTCAGAAATACTAAAGT+TGG + chr2_4:55309550-55309569 None:intergenic 25.0%
! CAAATGAAAATGATCATAAG+TGG + chr2_4:55309710-55309729 None:intergenic 25.0%
! AATATGTAATATTCAGCACA+TGG - chr2_4:55309736-55309755 Msa0336040:intron 25.0%
! TAATATTATTGTGATCAGAC+AGG + chr2_4:55310402-55310421 None:intergenic 25.0%
! TTAATATATGCTCCTTGATA+AGG + chr2_4:55310459-55310478 None:intergenic 25.0%
! TAGAGAAATTAGAAATTGAG+AGG + chr2_4:55310511-55310530 None:intergenic 25.0%
! ACCGAAACATTTAAAAGTTT+AGG + chr2_4:55310704-55310723 None:intergenic 25.0%
!! GTCAGTATATATAGTTGATA+TGG + chr2_4:55310823-55310842 None:intergenic 25.0%
! CTATATATACTGACATAACA+TGG - chr2_4:55310829-55310848 Msa0336040:CDS 25.0%
! GTAATCCACACAAAAAAAAT+AGG + chr2_4:55311012-55311031 None:intergenic 25.0%
AAGAAGAAGATGATGAAAGA+CGG + chr2_4:55305648-55305667 None:intergenic 30.0%
GAATTGAAAATTGGGGATTA+GGG + chr2_4:55305692-55305711 None:intergenic 30.0%
AGAATTGAAAATTGGGGATT+AGG + chr2_4:55305693-55305712 None:intergenic 30.0%
! AATCCCCAATTTTCAATTCT+AGG - chr2_4:55305693-55305712 Msa0336040:three_prime_UTR 30.0%
! ATCCCCAATTTTCAATTCTA+GGG - chr2_4:55305694-55305713 Msa0336040:three_prime_UTR 30.0%
AACCCTAGAATTGAAAATTG+GGG + chr2_4:55305699-55305718 None:intergenic 30.0%
GAACCCTAGAATTGAAAATT+GGG + chr2_4:55305700-55305719 None:intergenic 30.0%
TGAACCCTAGAATTGAAAAT+TGG + chr2_4:55305701-55305720 None:intergenic 30.0%
!!! GTTTTTTTTAATGGGGTTGA+TGG - chr2_4:55306031-55306050 Msa0336040:three_prime_UTR 30.0%
!!! GGTTTTTTCTGAATTACTCT+AGG - chr2_4:55306421-55306440 Msa0336040:CDS 30.0%
! AGTGTTGTTAAATAGCAGTT+AGG + chr2_4:55306463-55306482 None:intergenic 30.0%
! TGCTATTTAACAACACTGAT+AGG - chr2_4:55306466-55306485 Msa0336040:CDS 30.0%
! CACATTTTCTGTTAATATGG+TGG - chr2_4:55306544-55306563 Msa0336040:CDS 30.0%
TAAATTTCAGTTTGTCACCT+TGG - chr2_4:55306572-55306591 Msa0336040:CDS 30.0%
!!! TATAGTTTTGAGTTACAGTC+TGG - chr2_4:55306618-55306637 Msa0336040:CDS 30.0%
!!! TTTGTTTTAGGTTTGGTTAC+CGG - chr2_4:55306745-55306764 Msa0336040:CDS 30.0%
!! TTTGAAGTGTTGTCAAATAG+TGG - chr2_4:55306799-55306818 Msa0336040:CDS 30.0%
! TATTGGCTACTGTATAATTG+TGG + chr2_4:55306865-55306884 None:intergenic 30.0%
AAGCATACCTACATATTGAA+AGG + chr2_4:55307077-55307096 None:intergenic 30.0%
!!! ATTTCACATAGTGGGTTTTT+CGG - chr2_4:55307216-55307235 Msa0336040:intron 30.0%
CTGTTATCAATAGTGAATTG+CGG + chr2_4:55307256-55307275 None:intergenic 30.0%
GTGAAACAAAATTCTAGTCT+GGG + chr2_4:55307637-55307656 None:intergenic 30.0%
AGTGAAACAAAATTCTAGTC+TGG + chr2_4:55307638-55307657 None:intergenic 30.0%
TGTACTTTAGACACATTCAA+TGG - chr2_4:55307755-55307774 Msa0336040:CDS 30.0%
GTACTTTAGACACATTCAAT+GGG - chr2_4:55307756-55307775 Msa0336040:CDS 30.0%
TACTTTAGACACATTCAATG+GGG - chr2_4:55307757-55307776 Msa0336040:CDS 30.0%
CTAGTAAGTTATCTGAGAAA+CGG - chr2_4:55307805-55307824 Msa0336040:intron 30.0%
! CTTATGTTTGGCTAATTTTC+AGG - chr2_4:55308061-55308080 Msa0336040:intron 30.0%
ATGTGATAGTAAAGTAGAAC+GGG + chr2_4:55308231-55308250 None:intergenic 30.0%
GATGTGATAGTAAAGTAGAA+CGG + chr2_4:55308232-55308251 None:intergenic 30.0%
CTCATGTTATTCTACTTCTA+TGG - chr2_4:55308359-55308378 Msa0336040:intron 30.0%
ATTATATATCGACATGCAAG+TGG + chr2_4:55308445-55308464 None:intergenic 30.0%
AGAAATCTAAGAATGCAACA+TGG + chr2_4:55308658-55308677 None:intergenic 30.0%
TACTTTATCCGTTTAAGCTT+TGG - chr2_4:55308684-55308703 Msa0336040:intron 30.0%
GAGATTATCCAAAGCTTAAA+CGG + chr2_4:55308695-55308714 None:intergenic 30.0%
AAATGAGGATAGTACAATGA+GGG + chr2_4:55308728-55308747 None:intergenic 30.0%
AAAATGAGGATAGTACAATG+AGG + chr2_4:55308729-55308748 None:intergenic 30.0%
TTTATAAAGGATGGATCATC+AGG + chr2_4:55309004-55309023 None:intergenic 30.0%
TTGAATTAACAAAGACATGC+TGG - chr2_4:55309283-55309302 Msa0336040:intron 30.0%
! TTTCTTTTAATATGGGGAAG+GGG - chr2_4:55309326-55309345 Msa0336040:intron 30.0%
GGGGAAATCATTAATTAAAG+TGG - chr2_4:55309346-55309365 Msa0336040:intron 30.0%
! CATTTTACAATTCTCCTCAA+GGG - chr2_4:55309379-55309398 Msa0336040:intron 30.0%
! ATTTTACAATTCTCCTCAAG+GGG - chr2_4:55309380-55309399 Msa0336040:intron 30.0%
AGTTAACTTATTAGTCCATG+AGG + chr2_4:55309461-55309480 None:intergenic 30.0%
GGACTAATAAGTTAACTGAT+TGG - chr2_4:55309464-55309483 Msa0336040:intron 30.0%
! ATTTGGAATTAATCCTAGTC+GGG + chr2_4:55309496-55309515 None:intergenic 30.0%
!! TTTTCTATGCTAGACTTGTT+TGG - chr2_4:55309640-55309659 Msa0336040:intron 30.0%
!!! TTTCTCTATTTTTTGGCTCT+TGG - chr2_4:55310523-55310542 Msa0336040:CDS 30.0%
GGACAATCAATTCATTGATA+TGG - chr2_4:55310548-55310567 Msa0336040:intron 30.0%
GTGTTTAATTATCAACTCAC+TGG - chr2_4:55310616-55310635 Msa0336040:intron 30.0%
!!! TCACTGGAAGAATTGTTTTT+TGG - chr2_4:55310632-55310651 Msa0336040:intron 30.0%
!!! CACTGGAAGAATTGTTTTTT+GGG - chr2_4:55310633-55310652 Msa0336040:intron 30.0%
AAAACTGAACTATGACATAC+AGG + chr2_4:55310785-55310804 None:intergenic 30.0%
TGCAATGGAAAATGAAATGC+AGG + chr2_4:55305617-55305636 None:intergenic 35.0%
AAAATTGGGGATTAGGGTTA+GGG + chr2_4:55305686-55305705 None:intergenic 35.0%
TGAGAATTTCCTCAACGAAA+GGG + chr2_4:55305822-55305841 None:intergenic 35.0%
ATGAGAATTTCCTCAACGAA+AGG + chr2_4:55305823-55305842 None:intergenic 35.0%
!! GATCTCTCTTTGTTGTTAAG+AGG - chr2_4:55305996-55306015 Msa0336040:three_prime_UTR 35.0%
TGAATTACTCTAGGCTATAG+TGG - chr2_4:55306430-55306449 Msa0336040:CDS 35.0%
CGAAACACATGCAAATATAG+AGG + chr2_4:55306672-55306691 None:intergenic 35.0%
ATACCTACATATTGAAAGGC+TGG + chr2_4:55307073-55307092 None:intergenic 35.0%
GAAAAACCCACTATGTGAAA+TGG + chr2_4:55307217-55307236 None:intergenic 35.0%
GTTGGCATAAGCAGAAAATT+TGG - chr2_4:55307425-55307444 Msa0336040:intron 35.0%
CTCAAGAAGTGAATGGTATT+TGG - chr2_4:55307514-55307533 Msa0336040:intron 35.0%
!! AGGTTGCAAATCTTTTTAGC+AGG - chr2_4:55307562-55307581 Msa0336040:intron 35.0%
AATTCTAGTCTGGGTGTATA+GGG + chr2_4:55307628-55307647 None:intergenic 35.0%
AAATTCTAGTCTGGGTGTAT+AGG + chr2_4:55307629-55307648 None:intergenic 35.0%
CGTTTCTCAGATAACTTACT+AGG + chr2_4:55307807-55307826 None:intergenic 35.0%
AATATTAGCAGCGGATAGAT+AGG - chr2_4:55307830-55307849 Msa0336040:intron 35.0%
GATTCTTAATGCATATGCCA+AGG - chr2_4:55308083-55308102 Msa0336040:intron 35.0%
! GTAGATGAGACCTTTAACTT+CGG + chr2_4:55308114-55308133 None:intergenic 35.0%
TAAAGGTCTCATCTACAAAG+AGG - chr2_4:55308118-55308137 Msa0336040:intron 35.0%
CATGCATTTGACAAATGCAT+GGG - chr2_4:55308263-55308282 Msa0336040:intron 35.0%
ATGCATTTGACAAATGCATG+GGG - chr2_4:55308264-55308283 Msa0336040:intron 35.0%
TTGTCTTTCTGTTGCATGTT+TGG - chr2_4:55308311-55308330 Msa0336040:intron 35.0%
ATTATACAACAACATGCCCA+AGG + chr2_4:55308484-55308503 None:intergenic 35.0%
AATGAGGATAGTACAATGAG+GGG + chr2_4:55308727-55308746 None:intergenic 35.0%
CATTTATTGCAGTGAGTTTG+AGG - chr2_4:55308895-55308914 Msa0336040:intron 35.0%
!! TTGGAAGTAGTTGATGATGA+TGG + chr2_4:55308968-55308987 None:intergenic 35.0%
!! CAAAAGAAAAGTGTTCGCAA+TGG + chr2_4:55309044-55309063 None:intergenic 35.0%
CTTATCTTACTTGTGTCCTT+TGG - chr2_4:55309141-55309160 Msa0336040:CDS 35.0%
! TTCTTTTAATATGGGGAAGG+GGG - chr2_4:55309327-55309346 Msa0336040:intron 35.0%
CCTTGAGGAGAATTGTAAAA+TGG + chr2_4:55309381-55309400 None:intergenic 35.0%
! CCATTTTACAATTCTCCTCA+AGG - chr2_4:55309378-55309397 Msa0336040:intron 35.0%
TTCTAAGCGACTCACATATT+TGG - chr2_4:55309568-55309587 Msa0336040:intron 35.0%
! TTTGTAACTCAGTTCTGATC+AGG - chr2_4:55309788-55309807 Msa0336040:intron 35.0%
ACTTCAAATGCTCATATCAC+CGG - chr2_4:55309845-55309864 Msa0336040:intron 35.0%
!! CCTTTTCTCTAGAAATAGCT+GGG + chr2_4:55310243-55310262 None:intergenic 35.0%
!! ACCTTTTCTCTAGAAATAGC+TGG + chr2_4:55310244-55310263 None:intergenic 35.0%
TCCCTTGTGTCAATTTAAGT+GGG + chr2_4:55310371-55310390 None:intergenic 35.0%
!!! TCTATTTTTTGGCTCTTGGT+AGG - chr2_4:55310527-55310546 Msa0336040:CDS 35.0%
!!! TTTTCTAGAAGTTTTAGGCC+AGG - chr2_4:55310666-55310685 Msa0336040:intron 35.0%
! TTTAGGACATGATTAAAGCC+TGG + chr2_4:55310687-55310706 None:intergenic 35.0%
GGAAACTAGCAAGATCAAAA+TGG + chr2_4:55310764-55310783 None:intergenic 35.0%
! GTCATAGTTCAGTTTTCTAC+AGG - chr2_4:55310789-55310808 Msa0336040:intron 35.0%
ATATACTGACATAACATGGC+AGG - chr2_4:55310833-55310852 Msa0336040:CDS 35.0%
!!! GTCAGCCTATTTTTTTTGTG+TGG - chr2_4:55311004-55311023 Msa0336040:five_prime_UTR 35.0%
GAAAATTGGGGATTAGGGTT+AGG + chr2_4:55305687-55305706 None:intergenic 40.0%
! TCTGAGACATTGTTGCGTTA+GGG + chr2_4:55305726-55305745 None:intergenic 40.0%
!! TTCTGAGACATTGTTGCGTT+AGG + chr2_4:55305727-55305746 None:intergenic 40.0%
AACGCAACAATGTCTCAGAA+CGG - chr2_4:55305727-55305746 Msa0336040:three_prime_UTR 40.0%
TGAGAAGCTTAGTGCTTTGT+TGG + chr2_4:55305774-55305793 None:intergenic 40.0%
TTAACATCGATCTCAGCCAA+TGG - chr2_4:55305872-55305891 Msa0336040:three_prime_UTR 40.0%
TAACATCGATCTCAGCCAAT+GGG - chr2_4:55305873-55305892 Msa0336040:three_prime_UTR 40.0%
GTGAAAATGAACGAACCCAT+TGG + chr2_4:55305891-55305910 None:intergenic 40.0%
!! GATTGTTTTGCAGAGTCGTA+AGG - chr2_4:55305964-55305983 Msa0336040:three_prime_UTR 40.0%
ATCCAATGGACACACATGTT+TGG + chr2_4:55306286-55306305 None:intergenic 40.0%
AAATCATATAGCGGCCATAG+TGG + chr2_4:55306371-55306390 None:intergenic 40.0%
ACTCTAGGCTATAGTGGTAT+TGG - chr2_4:55306436-55306455 Msa0336040:CDS 40.0%
CTCTAGGCTATAGTGGTATT+GGG - chr2_4:55306437-55306456 Msa0336040:CDS 40.0%
! TTTGAGTTACAGTCTGGTCT+TGG - chr2_4:55306624-55306643 Msa0336040:CDS 40.0%
ATAGTGGCGCTATATCATAG+TGG - chr2_4:55306815-55306834 Msa0336040:CDS 40.0%
! TAGCAGCTGATATTGGCTAT+TGG + chr2_4:55306882-55306901 None:intergenic 40.0%
AGTGGAATAGCAGCTGATAT+TGG + chr2_4:55306889-55306908 None:intergenic 40.0%
GTGAAATGGTAGCAGATACT+CGG + chr2_4:55307203-55307222 None:intergenic 40.0%
TCTGCTACCATTTCACATAG+TGG - chr2_4:55307207-55307226 Msa0336040:intron 40.0%
CTGCTACCATTTCACATAGT+GGG - chr2_4:55307208-55307227 Msa0336040:intron 40.0%
GGCATAAGCAGAAAATTTGG+TGG - chr2_4:55307428-55307447 Msa0336040:intron 40.0%
! AAATTTGGTGGAAAACCTCC+TGG - chr2_4:55307440-55307459 Msa0336040:intron 40.0%
! AATTTGGTGGAAAACCTCCT+GGG - chr2_4:55307441-55307460 Msa0336040:intron 40.0%
! GGATTTCGAGTATGAAGTTC+AGG - chr2_4:55307464-55307483 Msa0336040:intron 40.0%
AATGCTGCTCAAGAAGTGAA+TGG - chr2_4:55307507-55307526 Msa0336040:intron 40.0%
TCATTAAACTCTCACCTCAC+AGG - chr2_4:55307999-55308018 Msa0336040:intron 40.0%
CCATGCATTTGTCAAATGCA+TGG + chr2_4:55308265-55308284 None:intergenic 40.0%
CCATGCATTTGACAAATGCA+TGG - chr2_4:55308262-55308281 Msa0336040:intron 40.0%
GGGGTTTGAATTGATCTTCA+TGG - chr2_4:55308283-55308302 Msa0336040:intron 40.0%
ATGAGGATAGTACAATGAGG+GGG + chr2_4:55308726-55308745 None:intergenic 40.0%
TGCAGTAGACAGATGAGTTA+TGG - chr2_4:55308806-55308825 Msa0336040:intron 40.0%
CACTGCAATAAATGCAAGTG+AGG + chr2_4:55308889-55308908 None:intergenic 40.0%
ATCAGGAACATCAGCTACAT+TGG + chr2_4:55308987-55309006 None:intergenic 40.0%
GATTTGAACTCCATCCTATG+CGG - chr2_4:55309402-55309421 Msa0336040:intron 40.0%
ATTTGAACTCCATCCTATGC+GGG - chr2_4:55309403-55309422 Msa0336040:intron 40.0%
! TTTTGACCTTATACCCGCAT+AGG + chr2_4:55309419-55309438 None:intergenic 40.0%
AAGATCCTCTGATGAGCATA+TGG - chr2_4:55309680-55309699 Msa0336040:intron 40.0%
AGAAGACTGATAAGGTTGTC+CGG + chr2_4:55309867-55309886 None:intergenic 40.0%
AGTGTAGCAGAAGACTGATA+AGG + chr2_4:55309875-55309894 None:intergenic 40.0%
TCTGCTACACTTTCTTCTTC+TGG - chr2_4:55309884-55309903 Msa0336040:intron 40.0%
CTGCTACACTTTCTTCTTCT+GGG - chr2_4:55309885-55309904 Msa0336040:intron 40.0%
AGAAGGCTTCACAAGATTTG+TGG + chr2_4:55310029-55310048 None:intergenic 40.0%
AGGGGAGGAACAAAAAAAGA+AGG + chr2_4:55310046-55310065 None:intergenic 40.0%
ATCATTGCAGCAGAAGAAAG+GGG + chr2_4:55310064-55310083 None:intergenic 40.0%
CATCATTGCAGCAGAAGAAA+GGG + chr2_4:55310065-55310084 None:intergenic 40.0%
TCATCATTGCAGCAGAAGAA+AGG + chr2_4:55310066-55310085 None:intergenic 40.0%
AGTAGGTATGGATGAAGACA+CGG + chr2_4:55310095-55310114 None:intergenic 40.0%
TGTACTTGTACAGTACCAGT+AGG + chr2_4:55310133-55310152 None:intergenic 40.0%
GTACAAGTACAACGACCTTA+TGG - chr2_4:55310142-55310161 Msa0336040:intron 40.0%
! TGTAGCATTGGAGTACCATA+AGG + chr2_4:55310160-55310179 None:intergenic 40.0%
AGAAATAGCTGGGTTTGGAA+GGG + chr2_4:55310233-55310252 None:intergenic 40.0%
TAGAAATAGCTGGGTTTGGA+AGG + chr2_4:55310234-55310253 None:intergenic 40.0%
! TCTCTAGAAATAGCTGGGTT+TGG + chr2_4:55310238-55310257 None:intergenic 40.0%
!! CCCAGCTATTTCTAGAGAAA+AGG - chr2_4:55310240-55310259 Msa0336040:intron 40.0%
AGCCCACTTAAATTGACACA+AGG - chr2_4:55310366-55310385 Msa0336040:intron 40.0%
GCCCACTTAAATTGACACAA+GGG - chr2_4:55310367-55310386 Msa0336040:intron 40.0%
CTCCCTTGTGTCAATTTAAG+TGG + chr2_4:55310372-55310391 None:intergenic 40.0%
CATCAATCATGACTTTCGAG+AGG - chr2_4:55310594-55310613 Msa0336040:intron 40.0%
AACATGGCAGGAAATGATGA+AGG - chr2_4:55310845-55310864 Msa0336040:CDS 40.0%
! AAGACGGAAAGAGAGTGCAA+TGG + chr2_4:55305632-55305651 None:intergenic 45.0%
TTAGGGTTAGGGTTAGGGTT+GGG + chr2_4:55305675-55305694 None:intergenic 45.0%
ATTAGGGTTAGGGTTAGGGT+TGG + chr2_4:55305676-55305695 None:intergenic 45.0%
! GTGCTTTGTTGGTCGAGATT+TGG + chr2_4:55305763-55305782 None:intergenic 45.0%
CAACGAAAGGGTCAATTCGT+TGG + chr2_4:55305810-55305829 None:intergenic 45.0%
ACGAATTGACCCTTTCGTTG+AGG - chr2_4:55305810-55305829 Msa0336040:three_prime_UTR 45.0%
CAGAGTCGTAAGGATGTTGA+AGG - chr2_4:55305974-55305993 Msa0336040:three_prime_UTR 45.0%
GTGATGAATCGTCGCAATAC+TGG - chr2_4:55306166-55306185 Msa0336040:intron 45.0%
CAATGGACACACATGTTTGG+AGG + chr2_4:55306283-55306302 None:intergenic 45.0%
CTCCAAACATGTGTGTCCAT+TGG - chr2_4:55306281-55306300 Msa0336040:intron 45.0%
CAGTTTGTCACCTTGGTTGT+TGG - chr2_4:55306579-55306598 Msa0336040:CDS 45.0%
!! CACTAGCTTTCCAACAACCA+AGG + chr2_4:55306592-55306611 None:intergenic 45.0%
TGATGCAGAAAGTGGAATGC+CGG + chr2_4:55306767-55306786 None:intergenic 45.0%
TGAGTGCATGATGCAGAAAG+TGG + chr2_4:55306775-55306794 None:intergenic 45.0%
GCACATCTGCTAACGAATAG+TGG + chr2_4:55306907-55306926 None:intergenic 45.0%
GTGCCAGCCTTTCAATATGT+AGG - chr2_4:55307067-55307086 Msa0336040:intron 45.0%
! ATTTGGTGGAAAACCTCCTG+GGG - chr2_4:55307442-55307461 Msa0336040:intron 45.0%
TAATGCTCGCGAATGTGAAG+AGG - chr2_4:55307542-55307561 Msa0336040:intron 45.0%
GAAACGGCGAATATTAGCAG+CGG - chr2_4:55307821-55307840 Msa0336040:intron 45.0%
!! GCGGATAGATAGGCTTTGAA+TGG - chr2_4:55307840-55307859 Msa0336040:intron 45.0%
! GGTGACTTTGGTTTCTGATC+TGG - chr2_4:55307962-55307981 Msa0336040:intron 45.0%
! GATGAGACCTTTAACTTCGG+AGG + chr2_4:55308111-55308130 None:intergenic 45.0%
CCATTCATGGGAGAGCAATA+AGG + chr2_4:55308166-55308185 None:intergenic 45.0%
CCTTATTGCTCTCCCATGAA+TGG - chr2_4:55308163-55308182 Msa0336040:intron 45.0%
AAACCAGCTCTGCCATTCAT+GGG + chr2_4:55308178-55308197 None:intergenic 45.0%
TAAACCAGCTCTGCCATTCA+TGG + chr2_4:55308179-55308198 None:intergenic 45.0%
! GGAAGTGTGTTGGGAAAGAT+AGG + chr2_4:55308391-55308410 None:intergenic 45.0%
TCTTTCCCAACACACTTCCA+CGG - chr2_4:55308392-55308411 Msa0336040:intron 45.0%
TTATAGAGACAGATCGTCCG+TGG + chr2_4:55308412-55308431 None:intergenic 45.0%
TGACTTTGCAACTCACACCT+TGG - chr2_4:55308464-55308483 Msa0336040:intron 45.0%
GACTTTGCAACTCACACCTT+GGG - chr2_4:55308465-55308484 Msa0336040:intron 45.0%
! TTGCACCGTTTCCCTTTTCA+AGG - chr2_4:55308598-55308617 Msa0336040:intron 45.0%
! TGCACCGTTTCCCTTTTCAA+GGG - chr2_4:55308599-55308618 Msa0336040:intron 45.0%
AACCCCCTTGAAAAGGGAAA+CGG + chr2_4:55308606-55308625 None:intergenic 45.0%
TGAGGATAGTACAATGAGGG+GGG + chr2_4:55308725-55308744 None:intergenic 45.0%
TTGCAGTGAGTTTGAGGAAC+TGG - chr2_4:55308901-55308920 Msa0336040:intron 45.0%
ACTGGAAGCAGTACCAACTA+TGG - chr2_4:55308919-55308938 Msa0336040:intron 45.0%
AGTACCAACTATGGCAGTCA+TGG - chr2_4:55308928-55308947 Msa0336040:intron 45.0%
!! GTTGATGATGATGGCTCAAG+AGG + chr2_4:55308959-55308978 None:intergenic 45.0%
CTTATGTACCAGGGAACCAA+AGG + chr2_4:55309160-55309179 None:intergenic 45.0%
ATGGAGTTCAAATCCCCTTG+AGG + chr2_4:55309396-55309415 None:intergenic 45.0%
ACTACTAAGCTGACACCTCA+TGG - chr2_4:55309443-55309462 Msa0336040:intron 45.0%
TGATTGGAAACTACCCGACT+AGG - chr2_4:55309480-55309499 Msa0336040:intron 45.0%
CTGATCAGGTCGTTTATTGC+AGG - chr2_4:55309802-55309821 Msa0336040:intron 45.0%
ATCAGGTCGTTTATTGCAGG+CGG - chr2_4:55309805-55309824 Msa0336040:intron 45.0%
AGAGATGGTATCTGCAAGGT+TGG + chr2_4:55309944-55309963 None:intergenic 45.0%
TGGAAGAGATGGTATCTGCA+AGG + chr2_4:55309948-55309967 None:intergenic 45.0%
GGAGTAGATGTTGGAAGAGA+TGG + chr2_4:55309959-55309978 None:intergenic 45.0%
GCTTCACAAGATTTGTGGCT+CGG + chr2_4:55310024-55310043 None:intergenic 45.0%
TAGGTATGGATGAAGACACG+GGG + chr2_4:55310093-55310112 None:intergenic 45.0%
GTAGGTATGGATGAAGACAC+GGG + chr2_4:55310094-55310113 None:intergenic 45.0%
TACCAGTAGGATGAAGTGGA+GGG + chr2_4:55310120-55310139 None:intergenic 45.0%
ACAGTACCAGTAGGATGAAG+TGG + chr2_4:55310124-55310143 None:intergenic 45.0%
TTTGGAAGGGGAGAAGAAAC+GGG + chr2_4:55310220-55310239 None:intergenic 45.0%
GTTTGGAAGGGGAGAAGAAA+CGG + chr2_4:55310221-55310240 None:intergenic 45.0%
GAAATAGCTGGGTTTGGAAG+GGG + chr2_4:55310232-55310251 None:intergenic 45.0%
ATGATGAAGGTCCAGATGAG+TGG - chr2_4:55310858-55310877 Msa0336040:CDS 45.0%
AGGTCCAGATGAGTGGTTAT+AGG - chr2_4:55310865-55310884 Msa0336040:CDS 45.0%
GGTCCAGATGAGTGGTTATA+GGG - chr2_4:55310866-55310885 Msa0336040:CDS 45.0%
GTCCAGATGAGTGGTTATAG+GGG - chr2_4:55310867-55310886 Msa0336040:CDS 45.0%
!! AATTATAATTATTTAATTAG+TGG - chr2_4:55307941-55307960 Msa0336040:intron 5.0%
!!! ATTTTTTTTTTCTTTTAATA+TGG - chr2_4:55309318-55309337 Msa0336040:intron 5.0%
!!! TTTTTTTTTTCTTTTAATAT+GGG - chr2_4:55309319-55309338 Msa0336040:intron 5.0%
!! ACAAATAAATAAATAAATAA+TGG + chr2_4:55310484-55310503 None:intergenic 5.0%
GGGGATTAGGGTTAGGGTTA+GGG + chr2_4:55305680-55305699 None:intergenic 50.0%
TGGGGATTAGGGTTAGGGTT+AGG + chr2_4:55305681-55305700 None:intergenic 50.0%
CTGGCACTATTGAGTAACGG+TGG + chr2_4:55306346-55306365 None:intergenic 50.0%
! GCGCTGGCACTATTGAGTAA+CGG + chr2_4:55306349-55306368 None:intergenic 50.0%
AGATACTCGGATAGCGTTGC+GGG + chr2_4:55307190-55307209 None:intergenic 50.0%
CAGATACTCGGATAGCGTTG+CGG + chr2_4:55307191-55307210 None:intergenic 50.0%
TTTGGTGGAAAACCTCCTGG+GGG - chr2_4:55307443-55307462 Msa0336040:intron 50.0%
CTTCATACTCGAAATCCCCC+AGG + chr2_4:55307461-55307480 None:intergenic 50.0%
!! CTTTAACTTCGGAGGCACCT+TGG + chr2_4:55308103-55308122 None:intergenic 50.0%
! CAAGGTGCCTCCGAAGTTAA+AGG - chr2_4:55308101-55308120 Msa0336040:intron 50.0%
! ATCGTCCGTGGAAGTGTGTT+GGG + chr2_4:55308400-55308419 None:intergenic 50.0%
!! GCACCGTTTCCCTTTTCAAG+GGG - chr2_4:55308600-55308619 Msa0336040:intron 50.0%
!! CACCGTTTCCCTTTTCAAGG+GGG - chr2_4:55308601-55308620 Msa0336040:intron 50.0%
GATGGGAACCCCCTTGAAAA+GGG + chr2_4:55308612-55308631 None:intergenic 50.0%
AGATGGGAACCCCCTTGAAA+AGG + chr2_4:55308613-55308632 None:intergenic 50.0%
GATAGTACAATGAGGGGGGA+GGG + chr2_4:55308721-55308740 None:intergenic 50.0%
CCATCCATGACTGCCATAGT+TGG + chr2_4:55308935-55308954 None:intergenic 50.0%
CCAACTATGGCAGTCATGGA+TGG - chr2_4:55308932-55308951 Msa0336040:intron 50.0%
! ACTTGTGTCCTTTGGTTCCC+TGG - chr2_4:55309149-55309168 Msa0336040:CDS 50.0%
CTCCATCCTATGCGGGTATA+AGG - chr2_4:55309410-55309429 Msa0336040:intron 50.0%
GACCTTATACCCGCATAGGA+TGG + chr2_4:55309415-55309434 None:intergenic 50.0%
GAGCACCATATGCTCATCAG+AGG + chr2_4:55309688-55309707 None:intergenic 50.0%
TCGTTTATTGCAGGCGGCTA+TGG - chr2_4:55309811-55309830 Msa0336040:intron 50.0%
CGTTTATTGCAGGCGGCTAT+GGG - chr2_4:55309812-55309831 Msa0336040:intron 50.0%
ACAGGTGTAGCAGCATGAGT+TGG + chr2_4:55309911-55309930 None:intergenic 50.0%
ACTCATGCTGCTACACCTGT+TGG - chr2_4:55309911-55309930 Msa0336040:intron 50.0%
CTCATGCTGCTACACCTGTT+GGG - chr2_4:55309912-55309931 Msa0336040:intron 50.0%
GGTGTAAGCGGAGTAGATGT+TGG + chr2_4:55309968-55309987 None:intergenic 50.0%
ATTGCAGCAGAAGAAAGGGG+AGG + chr2_4:55310061-55310080 None:intergenic 50.0%
AGGTATGGATGAAGACACGG+GGG + chr2_4:55310092-55310111 None:intergenic 50.0%
ACCAGTAGGATGAAGTGGAG+GGG + chr2_4:55310119-55310138 None:intergenic 50.0%
GTACCAGTAGGATGAAGTGG+AGG + chr2_4:55310121-55310140 None:intergenic 50.0%
GGTGGAAATGGCTGTAGCAT+TGG + chr2_4:55310172-55310191 None:intergenic 50.0%
GAAGAAACGGGAGCAAGTGA+AGG + chr2_4:55310208-55310227 None:intergenic 50.0%
AAAGGTCCGAGATGCTCTTC+TGG - chr2_4:55310258-55310277 Msa0336040:intron 50.0%
CACCCCTATAACCACTCATC+TGG + chr2_4:55310872-55310891 None:intergenic 50.0%
!! GAGTGGTTATAGGGGTGCTA+AGG - chr2_4:55310875-55310894 Msa0336040:CDS 50.0%
CAATAGTGCCAGCGCCACTA+TGG - chr2_4:55306354-55306373 Msa0336040:intron 55.0%
CATACTCGAAATCCCCCAGG+AGG + chr2_4:55307458-55307477 None:intergenic 55.0%
TGCACATGTGTACGCCTGTG+AGG + chr2_4:55308016-55308035 None:intergenic 55.0%
CAGGCGTACACATGTGCATC+TGG - chr2_4:55308018-55308037 Msa0336040:intron 55.0%
TCTCCCATGAATGGCAGAGC+TGG - chr2_4:55308172-55308191 Msa0336040:intron 55.0%
! GATCGTCCGTGGAAGTGTGT+TGG + chr2_4:55308401-55308420 None:intergenic 55.0%
GGATAGTACAATGAGGGGGG+AGG + chr2_4:55308722-55308741 None:intergenic 55.0%
!! CGAGGAGCGCTTATGTACCA+GGG + chr2_4:55309169-55309188 None:intergenic 55.0%
!! ACGAGGAGCGCTTATGTACC+AGG + chr2_4:55309170-55309189 None:intergenic 55.0%
TTGCAGGCGGCTATGGGTAT+CGG - chr2_4:55309818-55309837 Msa0336040:intron 55.0%
GGTATCTGCAAGGTTGGCAG+TGG + chr2_4:55309938-55309957 None:intergenic 55.0%
GCATCATGCTGGGGTGTAAG+CGG + chr2_4:55309980-55309999 None:intergenic 55.0%
!! GACTCAGGAGCATCATGCTG+GGG + chr2_4:55309989-55310008 None:intergenic 55.0%
!! GGACTCAGGAGCATCATGCT+GGG + chr2_4:55309990-55310009 None:intergenic 55.0%
!! TGGACTCAGGAGCATCATGC+TGG + chr2_4:55309991-55310010 None:intergenic 55.0%
GGTATGGATGAAGACACGGG+GGG + chr2_4:55310091-55310110 None:intergenic 55.0%
AAGTGGAGGGGCAGTAGGTA+TGG + chr2_4:55310107-55310126 None:intergenic 55.0%
GGTGGAGTTGGAGGTGGAAA+TGG + chr2_4:55310184-55310203 None:intergenic 55.0%
!! AGTGAAGGTGGTGGAGTTGG+AGG + chr2_4:55310193-55310212 None:intergenic 55.0%
!! GCAAGTGAAGGTGGTGGAGT+TGG + chr2_4:55310196-55310215 None:intergenic 55.0%
GAAACGGGAGCAAGTGAAGG+TGG + chr2_4:55310205-55310224 None:intergenic 55.0%
!! CGAGCACCAGAAGAGCATCT+CGG + chr2_4:55310267-55310286 None:intergenic 55.0%
TGCTCTTCTGGTGCTCGTTC+AGG - chr2_4:55310270-55310289 Msa0336040:intron 55.0%
TATAGCGGCCATAGTGGCGC+TGG + chr2_4:55306365-55306384 None:intergenic 60.0%
TGCAGGCGGCTATGGGTATC+GGG - chr2_4:55309819-55309838 Msa0336040:intron 60.0%
AAGGTTGGCAGTGGCCCAAC+AGG + chr2_4:55309929-55309948 None:intergenic 60.0%
GGATGAAGTGGAGGGGCAGT+AGG + chr2_4:55310112-55310131 None:intergenic 60.0%
GCCCCTCCACTTCATCCTAC+TGG - chr2_4:55310115-55310134 Msa0336040:intron 60.0%
!! GAAGGTGGTGGAGTTGGAGG+TGG + chr2_4:55310190-55310209 None:intergenic 60.0%
ACGGGAGCAAGTGAAGGTGG+TGG + chr2_4:55310202-55310221 None:intergenic 60.0%
CGGCTGCTGCTGTTGGACTC+AGG + chr2_4:55310004-55310023 None:intergenic 65.0%
! TGTGGCTCGGCTGCTGCTGT+TGG + chr2_4:55310011-55310030 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55305606 55311090 55305606 ID=Msa0336040;Name=Msa0336040
chr2_4 mRNA 55305606 55311090 55305606 ID=Msa0336040-mRNA-1;Parent=Msa0336040;Name=Msa0336040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=130|1|1|1|1|1|8|485|367
chr2_4 exon 55305606 55306147 55305606 ID=Msa0336040-mRNA-1:exon:16792;Parent=Msa0336040-mRNA-1
chr2_4 exon 55306405 55306872 55306405 ID=Msa0336040-mRNA-1:exon:16791;Parent=Msa0336040-mRNA-1
chr2_4 exon 55307663 55307789 55307663 ID=Msa0336040-mRNA-1:exon:16790;Parent=Msa0336040-mRNA-1
chr2_4 exon 55308557 55308613 55308557 ID=Msa0336040-mRNA-1:exon:16789;Parent=Msa0336040-mRNA-1
chr2_4 exon 55309113 55309257 55309113 ID=Msa0336040-mRNA-1:exon:16788;Parent=Msa0336040-mRNA-1
chr2_4 exon 55310509 55310558 55310509 ID=Msa0336040-mRNA-1:exon:16787;Parent=Msa0336040-mRNA-1
chr2_4 exon 55310679 55310719 55310679 ID=Msa0336040-mRNA-1:exon:16786;Parent=Msa0336040-mRNA-1
chr2_4 exon 55310802 55311090 55310802 ID=Msa0336040-mRNA-1:exon:16785;Parent=Msa0336040-mRNA-1
chr2_4 five_prime_UTR 55310961 55311090 55310961 ID=Msa0336040-mRNA-1:five_prime_utr;Parent=Msa0336040-mRNA-1
chr2_4 CDS 55310802 55310960 55310802 ID=Msa0336040-mRNA-1:cds;Parent=Msa0336040-mRNA-1
chr2_4 CDS 55310679 55310719 55310679 ID=Msa0336040-mRNA-1:cds;Parent=Msa0336040-mRNA-1
chr2_4 CDS 55310509 55310558 55310509 ID=Msa0336040-mRNA-1:cds;Parent=Msa0336040-mRNA-1
chr2_4 CDS 55309113 55309257 55309113 ID=Msa0336040-mRNA-1:cds;Parent=Msa0336040-mRNA-1
chr2_4 CDS 55308557 55308613 55308557 ID=Msa0336040-mRNA-1:cds;Parent=Msa0336040-mRNA-1
chr2_4 CDS 55307663 55307789 55307663 ID=Msa0336040-mRNA-1:cds;Parent=Msa0336040-mRNA-1
chr2_4 CDS 55306405 55306872 55306405 ID=Msa0336040-mRNA-1:cds;Parent=Msa0336040-mRNA-1
chr2_4 CDS 55306091 55306147 55306091 ID=Msa0336040-mRNA-1:cds;Parent=Msa0336040-mRNA-1
chr2_4 three_prime_UTR 55305606 55306090 55305606 ID=Msa0336040-mRNA-1:three_prime_utr;Parent=Msa0336040-mRNA-1
Gene Sequence

>Msa0336040

ATGTCTCAGAACGGAAAATTGATGCCAAATCTCGACCAACAAAGCACTAAGCTTCTCAATCTCACTGTTCTCCAACGAATTGACCCTTTCGTTGAGGAAATTCTCATTACTGCTGCTCATGTTACATTCTATGAGTTTAACATCGATCTCAGCCAATGGAGTCGTAAGGATGTTGAAGGATCTCTCTTTGTTGTTAAGAGAAATACTCAACCAAGATTTCAGTTTATTGTGATGAATCGTCGCAATACTGAAAATTTGGTGGAAAACCTCCTGGGGGATTTCGAGTATGAAGTTCAGGTTCCATATCTATTGTATAGAAATGCTGCTCAAGAAGTGAATGGTATTTGGTTCTATAATGCTCGCGAATGTGAAGAGGTTGCAAATCTTTTTAGCAGGATTCTTAATGCATATGCCAAGGTGCCTCCGAAGTTAAAGGTCTCATCTACAAAGAGTGAGTTTGAGGAACTGGAAGCAGTACCAACTATGGCAGTCATGGATGGTCCTCTTGAGCCATCATCATCAACTACTTCCAATGTAGCTGATGTTCCTGATGATCCATCCTTTATAAATTTCTTCAGTGCGGCTATGGGTATCGGGAATACTTCAAATGCTCATATCACCGGACAACCTTATCAGTCTTCTGCTACACTTTCTTCTTCTGGGCCAACTCATGCTGCTACACCTGTTGGGCCACTGCCAACCTTGCAGATACCATCTCTTCCAACATCTACTCCGCTTACACCCCAGCATGATGCTCCTGAGTCCAACAGCAGCAGCCGAGCCACAAATCTTGTGAAGCCTTCTTTTTTTGTTCCTCCCCTTTCTTCTGCTGCAATGATGATTCCCCCCGTGTCTTCATCCATACCTACTGCCCCTCCACTTCATCCTACTGGTACTGTACAAGTACAACGACCTTATGGTACTCCAATGCTACAGCCATTTCCACCTCCAACTCCACCACCTTCACTTGCTCCCGTTTCTTCTCCCCTTCCAAACCCAGCTATTTCTAGAGAAAAGGTCCGAGATGCTCTTCTGGTGCTCGTTCAGGACAATCAATTCATTGATATGGTTTATAATGCGCTGCTGAATGCTCATCAATCATGA

Protein sequence

>Msa0336040

MSQNGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNARECEEVANLFSRILNAYAKVPPKLKVSSTKSEFEELEAVPTMAVMDGPLEPSSSTTSNVADVPDDPSFINFFSAAMGIGNTSNAHITGQPYQSSATLSSSGPTHAATPVGPLPTLQIPSLPTSTPLTPQHDAPESNSSSRATNLVKPSFFVPPLSSAAMMIPPVSSSIPTAPPLHPTGTVQVQRPYGTPMLQPFPPPTPPPSLAPVSSPLPNPAISREKVRDALLVLVQDNQFIDMVYNALLNAHQS*