AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033410 MtrunA17_Chr7g0255971 99.296 426 3 0 1 426 1 426 0.0 882
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033410 AT1G05055.1 75.186 403 95 2 25 426 22 420 0.0 643

Find 165 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTGTTGTTTGCATTT+TGG 0.110115 7_1:-68437808 None:intergenic
TAATTAACTGCTGCATCTTT+TGG 0.192887 7_1:+68435139 Msa1033410:five_prime_UTR
CGCAAAGCATTTACTGCTTA+AGG 0.211646 7_1:-68438088 None:intergenic
CCAAATGGGGCGAAGAAATA+AGG 0.217199 7_1:-68436659 None:intergenic
AATACGTTCCTCCAGTTTCT+TGG 0.246278 7_1:-68436288 None:intergenic
CGCGGAGGCGTCTACGATAC+TGG 0.254751 7_1:-68435354 None:intergenic
AGCAGGTTGAGTTATTTATC+AGG 0.265498 7_1:+68435915 Msa1033410:CDS
TGGCTGATAGTTGAGAAATT+TGG 0.279899 7_1:+68433958 Msa1033410:five_prime_UTR
GGCTGATAGTTGAGAAATTT+GGG 0.316510 7_1:+68433959 Msa1033410:five_prime_UTR
ATGAATGGCTGTCGTATCTA+TGG 0.319191 7_1:-68435326 None:intergenic
GCAATTAGCTACCCCATCTT+TGG 0.320025 7_1:-68435984 None:intergenic
CCTTATTTCTTCGCCCCATT+TGG 0.328190 7_1:+68436659 Msa1033410:CDS
GGATGCAACATCACAATAAC+AGG 0.332868 7_1:-68437984 None:intergenic
ATCTCAGCAAATGGCACTAT+AGG 0.336549 7_1:-68436705 None:intergenic
TGTTGGTCAGTCCCGTTTCA+TGG 0.342585 7_1:-68438036 None:intergenic
GCAAAGCATTTACTGCTTAA+GGG 0.354182 7_1:-68438087 None:intergenic
ATTGCTGGGAGACCACTTAA+TGG 0.357088 7_1:+68435181 Msa1033410:CDS
TTAAGCAGTAAATGCTTTGC+GGG 0.358488 7_1:+68438090 Msa1033410:three_prime_UTR
CAGACACGAACTTTGCATCT+TGG 0.370022 7_1:-68436600 None:intergenic
TTGACAACCAAAACAAGTAT+TGG 0.372545 7_1:-68436766 None:intergenic
TGACAACCAAAACAAGTATT+GGG 0.384714 7_1:-68436765 None:intergenic
TCCACTTAGTCATGTTGGTT+TGG 0.385857 7_1:+68435955 Msa1033410:CDS
AAAGCTTTGATATGTGATTC+AGG 0.388836 7_1:-68436028 None:intergenic
TACGGCTAATTTGATTAAGA+TGG 0.391974 7_1:+68436494 Msa1033410:CDS
TTAGTGGCGGCAAGGGCGAC+GGG 0.395842 7_1:-68434141 None:intergenic
TTAGTGATATTATTTATATG+AGG 0.397548 7_1:+68438123 Msa1033410:three_prime_UTR
GCTAATTGCTTGACAGATCT+TGG 0.398261 7_1:+68435998 Msa1033410:CDS
TCAACAAAGTCTCCTTAGTC+AGG 0.400238 7_1:+68436785 Msa1033410:CDS
TAGATCATGGGAGTCTTTGC+AGG 0.400865 7_1:+68435279 Msa1033410:CDS
TCAACATTCATCACCGTTGA+TGG 0.405020 7_1:+68433938 Msa1033410:five_prime_UTR
TGTCATGAAGAGGCCAAAAC+TGG 0.406378 7_1:+68436561 Msa1033410:CDS
AACAAGTATTGGGAAAACTA+TGG 0.408053 7_1:-68436755 None:intergenic
GAAATCATGAATAACATTGC+TGG 0.411953 7_1:+68435166 Msa1033410:exon
AGCATAGGGCTGAAAATCAT+TGG 0.418688 7_1:-68437918 None:intergenic
GCAGTAAATGCTTTGCGGGC+TGG 0.419918 7_1:+68438094 Msa1033410:three_prime_UTR
GTAGCATACTCTGCTATTGC+TGG 0.426986 7_1:-68436474 None:intergenic
AAGCATCTTTGCCAAGAAAC+TGG 0.430517 7_1:+68436277 Msa1033410:CDS
TTGTTCATGAGTCCGGTAGA+TGG 0.432629 7_1:-68438005 None:intergenic
TCTCAGCAAATGGCACTATA+GGG 0.432960 7_1:-68436704 None:intergenic
CTTAGTGGCGGCAAGGGCGA+CGG 0.433601 7_1:-68434142 None:intergenic
AAGCTCTCTCCCATGCTTCA+AGG 0.434199 7_1:-68435246 None:intergenic
GCAATAACAGCCATTCTACT+TGG 0.435975 7_1:-68435890 None:intergenic
AAATTTGTTCTTTCCATCGT+TGG 0.437314 7_1:+68434033 Msa1033410:five_prime_UTR
AGAAATTTGGGATTGAAAGT+TGG 0.437925 7_1:+68433971 Msa1033410:five_prime_UTR
CCGGACTCATGAACAAGTTC+CGG 0.441793 7_1:+68438012 Msa1033410:three_prime_UTR
AGCTACTGCGCGAATTCAAA+AGG 0.444332 7_1:+68435393 Msa1033410:CDS
TGCCTGAAGCTCTCACAGCC+TGG 0.445795 7_1:-68437874 None:intergenic
GTCAGTCCCGTTTCATGGAC+CGG 0.446240 7_1:-68438031 None:intergenic
AACCCTCAGCTGCTCTCTGC+GGG 0.451697 7_1:-68436521 None:intergenic
ATCACATATCAAAGCTTTGA+TGG 0.453412 7_1:+68436033 Msa1033410:CDS
CAAGTTCCGGTCCATGAAAC+GGG 0.454078 7_1:+68438025 Msa1033410:three_prime_UTR
AAAATAAGATGCTCGGTCAT+TGG 0.454904 7_1:+68436229 Msa1033410:CDS
TTGGGATTGAAAGTTGGTGC+TGG 0.458891 7_1:+68433977 Msa1033410:five_prime_UTR
AGGGCGACGGGGCTCAGCGT+TGG 0.460990 7_1:-68434129 None:intergenic
ACTGTTGCAGCTTCTTCGCT+TGG 0.461264 7_1:+68435115 Msa1033410:intron
CTTAAGCAGTAAATGCTTTG+CGG 0.464779 7_1:+68438089 Msa1033410:three_prime_UTR
ATGATATGACCTTGCCAAAT+GGG 0.468641 7_1:-68436673 None:intergenic
CTTATACAGAAGATAGATCA+TGG 0.469908 7_1:+68435266 Msa1033410:CDS
TCTGCTATTGCTGGAGGTGG+TGG 0.474873 7_1:-68436465 None:intergenic
AATGTTGAGGCGGTGGTTGA+AGG 0.475037 7_1:-68433923 None:intergenic
CAGAATCCACTTAGTCATGT+TGG 0.477460 7_1:+68435950 Msa1033410:CDS
AATTTAATGTCGAGAGCATA+GGG 0.480867 7_1:-68437932 None:intergenic
CAAGAATTAACTCTTTAAAG+TGG 0.481614 7_1:-68436434 None:intergenic
AAATTGCAAGGGAGACATGC+TGG 0.484045 7_1:-68438268 None:intergenic
GTGCTGCTCTTCATCTTCGT+CGG 0.484543 7_1:-68433861 None:intergenic
CTAAATCAAATCCCATCATA+TGG 0.484909 7_1:+68436118 Msa1033410:CDS
CAAATGGGGCGAAGAAATAA+GGG 0.486869 7_1:-68436658 None:intergenic
CAGTAGCTGCATTGGAAGCA+AGG 0.488868 7_1:-68435378 None:intergenic
AATGGCTGTTATTGCAAAGC+AGG 0.492810 7_1:+68435898 Msa1033410:CDS
ACTTCTCGATGACCATATGA+TGG 0.494544 7_1:-68436130 None:intergenic
TAGTGATATTATTTATATGA+GGG 0.495841 7_1:+68438124 Msa1033410:three_prime_UTR
ACGGCTAATTTGATTAAGAT+GGG 0.497450 7_1:+68436495 Msa1033410:CDS
AATTCGCGCAGTAGCTGCAT+TGG 0.498951 7_1:-68435386 None:intergenic
TCTTTGCAGGAAGATGAATC+TGG 0.499907 7_1:+68435292 Msa1033410:CDS
CGGTGATCGGAGAAGCTTAG+TGG 0.501668 7_1:-68434157 None:intergenic
ACAAGTTCCGGTCCATGAAA+CGG 0.503143 7_1:+68438024 Msa1033410:three_prime_UTR
TCTTCTAAATCTCCATTAAG+TGG 0.504303 7_1:-68435193 None:intergenic
CCGGAACTTGTTCATGAGTC+CGG 0.506310 7_1:-68438012 None:intergenic
ATTAATCCAACGTTGTACAT+AGG 0.509643 7_1:+68434056 Msa1033410:five_prime_UTR
TACTCTGCTATTGCTGGAGG+TGG 0.509837 7_1:-68436468 None:intergenic
TGATGACGGCCTTGAAGCAT+GGG 0.514779 7_1:+68435237 Msa1033410:CDS
GCCCTCAGTACATGTGATCC+TGG 0.517560 7_1:+68436169 Msa1033410:CDS
GCATAGGGCTGAAAATCATT+GGG 0.517731 7_1:-68437917 None:intergenic
AAGAATTAACTCTTTAAAGT+GGG 0.519422 7_1:-68436433 None:intergenic
TTTCCCGCAGAGAGCAGCTG+AGG 0.522724 7_1:+68436518 Msa1033410:CDS
ATGTGATCCTGGTGATCTCA+TGG 0.524391 7_1:+68436180 Msa1033410:CDS
TGGGATTGAAAGTTGGTGCT+GGG 0.524854 7_1:+68433978 Msa1033410:five_prime_UTR
CAATTTAATGTCGAGAGCAT+AGG 0.527004 7_1:-68437933 None:intergenic
TTCCAGGAAAGAACAAAAGA+AGG 0.527754 7_1:-68438198 None:intergenic
GATGGAGAGATCTCAGCAAA+TGG 0.528431 7_1:-68436714 None:intergenic
GCAGATGCTTACCCTGACTA+AGG 0.531723 7_1:-68436797 None:intergenic
ATGATGACGGCCTTGAAGCA+TGG 0.531905 7_1:+68435236 Msa1033410:CDS
GTTTGGTGACTACCAAAGAT+GGG 0.532066 7_1:+68435972 Msa1033410:CDS
TTCGTCGGAGTGAGTTTCGA+TGG 0.532800 7_1:-68433846 None:intergenic
CTGCATTGGAAGCAAGGGCG+CGG 0.534684 7_1:-68435372 None:intergenic
ACGATACTGGGCATGATGAA+TGG 0.537849 7_1:-68435341 None:intergenic
AAATCATGAATAACATTGCT+GGG 0.538852 7_1:+68435167 Msa1033410:exon
ACGATACTTATACATTGTTG+TGG 0.540981 7_1:+68435423 Msa1033410:CDS
GTGATGTTGCATCCATCTAC+CGG 0.542199 7_1:+68437993 Msa1033410:three_prime_UTR
GAGAAGCTTAGTGGCGGCAA+GGG 0.543362 7_1:-68434148 None:intergenic
CAGCAGTGCATGGACAATCT+CGG 0.543605 7_1:-68434086 None:intergenic
GGTTTGGTGACTACCAAAGA+TGG 0.543660 7_1:+68435971 Msa1033410:CDS
ACCAAACCAACATGACTAAG+TGG 0.545386 7_1:-68435956 None:intergenic
GTTGAGGCGGTGGTTGAAGG+AGG 0.546105 7_1:-68433920 None:intergenic
GTATTGGGAAAACTATGGCT+TGG 0.546635 7_1:-68436750 None:intergenic
GCAGGTTGAGTTATTTATCA+GGG 0.547101 7_1:+68435916 Msa1033410:CDS
ATGGGTAAACTAGAATGCTC+AGG 0.550740 7_1:+68436052 Msa1033410:CDS
GCGGAGGCGTCTACGATACT+GGG 0.551267 7_1:-68435353 None:intergenic
AAATACTTTGCTGGCAACAA+CGG 0.551591 7_1:-68438315 None:intergenic
GAATGTACATGTCACAATCA+AGG 0.551889 7_1:-68437831 None:intergenic
GATGATATGACCTTGCCAAA+TGG 0.554390 7_1:-68436674 None:intergenic
AAAGAGTAAAATAAGATGCT+CGG 0.555283 7_1:+68436222 Msa1033410:CDS
GGACTTTCGACCAAGTAGAA+TGG 0.557663 7_1:+68435880 Msa1033410:CDS
TTTCTTCGCCCCATTTGGCA+AGG 0.558902 7_1:+68436664 Msa1033410:CDS
ACATTAAATTGCTATCTAAG+TGG 0.563697 7_1:+68437945 Msa1033410:three_prime_UTR
GGAGAAGCTTAGTGGCGGCA+AGG 0.566664 7_1:-68434149 None:intergenic
GCTACTGCGCGAATTCAAAA+GGG 0.568436 7_1:+68435394 Msa1033410:CDS
AGTAGCTGCATTGGAAGCAA+GGG 0.572059 7_1:-68435377 None:intergenic
AGCCATACCTCAACGGTGAT+CGG 0.577511 7_1:-68434170 None:intergenic
TCACATATCAAAGCTTTGAT+GGG 0.580406 7_1:+68436034 Msa1033410:CDS
GAAGAGGCCAAAACTGGAGG+GGG 0.581044 7_1:+68436567 Msa1033410:CDS
ATAAAACCAATACCTTGGAC+AGG 0.584168 7_1:-68435447 None:intergenic
ATGAAGAGGCCAAAACTGGA+GGG 0.588329 7_1:+68436565 Msa1033410:CDS
ATAGTTTCCATGAGATCACC+AGG 0.588426 7_1:-68436187 None:intergenic
CATTGGAAGCAAGGGCGCGG+AGG 0.590208 7_1:-68435369 None:intergenic
TTCCCGCAGAGAGCAGCTGA+GGG 0.592191 7_1:+68436519 Msa1033410:CDS
TTCGCGCCTATGTACAACGT+TGG 0.594743 7_1:-68434062 None:intergenic
ACACAGTTCACAGCAGTGCA+TGG 0.595333 7_1:-68434096 None:intergenic
CATTGTTGTGGACCTGTCCA+AGG 0.596446 7_1:+68435435 Msa1033410:CDS
CATGAAGAGGCCAAAACTGG+AGG 0.598041 7_1:+68436564 Msa1033410:CDS
CCACAGACGCGGCATTCAGT+AGG 0.598667 7_1:-68436630 None:intergenic
GGTGATGAATGTTGAGGCGG+TGG 0.600351 7_1:-68433930 None:intergenic
CTTCTCGATGACCATATGAT+GGG 0.601649 7_1:-68436129 None:intergenic
GAGAGCTTACATAATTGCCC+AGG 0.603317 7_1:+68437856 Msa1033410:CDS
ACCAGGATCACATGTACTGA+GGG 0.609658 7_1:-68436170 None:intergenic
AATTTGTACATGTCATGAAG+AGG 0.609944 7_1:+68436551 Msa1033410:CDS
ATCAGGTGATCAGATGGTGT+TGG 0.610013 7_1:-68438053 None:intergenic
TGAAGAGGCCAAAACTGGAG+GGG 0.611129 7_1:+68436566 Msa1033410:CDS
AGCAATAGCAGAGTATGCTA+CGG 0.612493 7_1:+68436476 Msa1033410:CDS
CAACAAAGTCTCCTTAGTCA+GGG 0.617485 7_1:+68436786 Msa1033410:CDS
TAGTGGCGGCAAGGGCGACG+GGG 0.619705 7_1:-68434140 None:intergenic
AATTGCTTGACAGATCTTGG+TGG 0.623485 7_1:+68436001 Msa1033410:CDS
AGCTTCTCCGATCACCGTTG+AGG 0.627309 7_1:+68434163 Msa1033410:five_prime_UTR
ATGACATGTACAAATTGCAA+CGG 0.627725 7_1:-68436544 None:intergenic
GAACCCTCAGCTGCTCTCTG+CGG 0.628015 7_1:-68436522 None:intergenic
GCATACTCTGCTATTGCTGG+AGG 0.629853 7_1:-68436471 None:intergenic
TGTGAAGGCAGCTTCAGAGA+GGG 0.635359 7_1:+68435859 Msa1033410:intron
TTATACAGAAGATAGATCAT+GGG 0.648110 7_1:+68435267 Msa1033410:CDS
GTATTCAGTTGCACTAGATG+AGG 0.654736 7_1:+68436306 Msa1033410:CDS
TGATATGACCTTGCCAAATG+GGG 0.658745 7_1:-68436672 None:intergenic
TCTCAACTATCAGCCATCAA+CGG 0.659357 7_1:-68433951 None:intergenic
TGTTGACAGCCATACCTCAA+CGG 0.662860 7_1:-68434177 None:intergenic
GAAGATGAAGCTAATGATGA+CGG 0.672146 7_1:+68435223 Msa1033410:CDS
ATCAACGGTGATGAATGTTG+AGG 0.675785 7_1:-68433936 None:intergenic
TGAATGGCTGTCGTATCTAT+GGG 0.676923 7_1:-68435325 None:intergenic
CACCAGGATCACATGTACTG+AGG 0.677082 7_1:-68436171 None:intergenic
TTTGGTGACTACCAAAGATG+GGG 0.677542 7_1:+68435973 Msa1033410:CDS
ACGTTGGATTAATCCAACGA+TGG 0.680648 7_1:-68434046 None:intergenic
CATCTTTGCCAAGAAACTGG+AGG 0.685674 7_1:+68436280 Msa1033410:CDS
AACGGTGATGAATGTTGAGG+CGG 0.697191 7_1:-68433933 None:intergenic
ATGTGAAGGCAGCTTCAGAG+AGG 0.697264 7_1:+68435858 Msa1033410:intron
TGATCGGAGAAGCTTAGTGG+CGG 0.705543 7_1:-68434154 None:intergenic
TAAGGGTCAATCCACAGACG+CGG 0.726359 7_1:-68436641 None:intergenic
GATGCAACATCACAATAACA+GGG 0.762256 7_1:-68437983 None:intergenic
GCAACATCACAATAACAGGG+AGG 0.778977 7_1:-68437980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATAATTAAAAATGAG+AGG - chr7_1:68434015-68434034 None:intergenic 10.0%
!! GTAATATAAAAATAACAAAT+AGG + chr7_1:68436944-68436963 Msa1033410:intron 10.0%
!! AAATACAAATTATATATCAT+CGG - chr7_1:68437657-68437676 None:intergenic 10.0%
!!! AAAAAGAAAATAATTTGTTA+TGG - chr7_1:68438178-68438197 None:intergenic 10.0%
!! TTATTGAAATACATAAATTG+TGG + chr7_1:68437012-68437031 Msa1033410:intron 15.0%
!! ATCTAATGAATAAAAAAATC+TGG - chr7_1:68437066-68437085 None:intergenic 15.0%
!! ATATACTATATAGTATAGTT+GGG - chr7_1:68437577-68437596 None:intergenic 15.0%
!! TTAGTGATATTATTTATATG+AGG + chr7_1:68438123-68438142 Msa1033410:three_prime_UTR 15.0%
!! TAGTGATATTATTTATATGA+GGG + chr7_1:68438124-68438143 Msa1033410:three_prime_UTR 15.0%
!! ATTGATTAAAAAAATTGCAA+GGG - chr7_1:68438282-68438301 None:intergenic 15.0%
!!! TTGCAATTTTTTTAATCAAT+GGG + chr7_1:68438282-68438301 Msa1033410:three_prime_UTR 15.0%
!! AACATAATACAATCAGTTTA+GGG - chr7_1:68434222-68434241 None:intergenic 20.0%
!! TATTCTAATATGCATAATCT+AGG + chr7_1:68434283-68434302 Msa1033410:intron 20.0%
!! TATTTATGCATAGGAAATTA+CGG - chr7_1:68434822-68434841 None:intergenic 20.0%
!! TTCATGATCTTATTATTTCA+CGG + chr7_1:68434910-68434929 Msa1033410:intron 20.0%
!! AATTAATAAAACCAATACCT+TGG - chr7_1:68435455-68435474 None:intergenic 20.0%
!!! TTTTCAAGTAATCAATACAA+TGG - chr7_1:68435517-68435536 None:intergenic 20.0%
!!! TGTATTGATTACTTGAAAAT+TGG + chr7_1:68435518-68435537 Msa1033410:intron 20.0%
!!! GTATTGATTACTTGAAAATT+GGG + chr7_1:68435519-68435538 Msa1033410:intron 20.0%
!!! TATTGATTACTTGAAAATTG+GGG + chr7_1:68435520-68435539 Msa1033410:intron 20.0%
!!! ATTCAAAAAGCATTTGTAAA+AGG - chr7_1:68435607-68435626 None:intergenic 20.0%
!! GCAATTTCATATATAATTAC+AGG - chr7_1:68435731-68435750 None:intergenic 20.0%
!! AATAAGATACTTGTAATTGT+AGG - chr7_1:68435761-68435780 None:intergenic 20.0%
!!! AGAAGTTCTGATTTTATATT+CGG + chr7_1:68436147-68436166 Msa1033410:CDS 20.0%
!!! TTTTACTCTTTTTGCATTTT+TGG - chr7_1:68436213-68436232 None:intergenic 20.0%
!!! AAGAATTAACTCTTTAAAGT+GGG - chr7_1:68436436-68436455 None:intergenic 20.0%
!!! CAAAAATTATTGACTATTAC+AGG - chr7_1:68437292-68437311 None:intergenic 20.0%
!! CATATACTATATAGTATAGT+TGG - chr7_1:68437578-68437597 None:intergenic 20.0%
!!! CATTGATTAAAAAAATTGCA+AGG - chr7_1:68438283-68438302 None:intergenic 20.0%
!!! CTTGCAATTTTTTTAATCAA+TGG + chr7_1:68438281-68438300 Msa1033410:three_prime_UTR 20.0%
!! TGATTATAAAAATACTTTGC+TGG - chr7_1:68438327-68438346 None:intergenic 20.0%
! ACATAATACAATCAGTTTAG+GGG - chr7_1:68434221-68434240 None:intergenic 25.0%
! GAACATAATACAATCAGTTT+AGG - chr7_1:68434223-68434242 None:intergenic 25.0%
!!! TAGATCAAAAGTGTTTTCTT+TGG + chr7_1:68434467-68434486 Msa1033410:intron 25.0%
! TTAGGTTCAGAAGAATTTAA+GGG + chr7_1:68434494-68434513 Msa1033410:intron 25.0%
! GGATATATATTCATAGGTTT+CGG + chr7_1:68434520-68434539 Msa1033410:intron 25.0%
! ATTTGCAGAGTGAAAAATAA+AGG - chr7_1:68434742-68434761 None:intergenic 25.0%
! ATTTATGCATAGGAAATTAC+GGG - chr7_1:68434821-68434840 None:intergenic 25.0%
! TGAGGTTATTATTTATGCAT+AGG - chr7_1:68434831-68434850 None:intergenic 25.0%
! GTGAAATTAAAAAGAAAACG+AGG - chr7_1:68434861-68434880 None:intergenic 25.0%
! GAATAATTCACACACATAAA+GGG - chr7_1:68435000-68435019 None:intergenic 25.0%
! TGAATAATTCACACACATAA+AGG - chr7_1:68435001-68435020 None:intergenic 25.0%
! AAATCATGAATAACATTGCT+GGG + chr7_1:68435167-68435186 Msa1033410:exon 25.0%
! TTATACAGAAGATAGATCAT+GGG + chr7_1:68435267-68435286 Msa1033410:CDS 25.0%
! AGGAAATATAGATAAGACAT+TGG - chr7_1:68435587-68435606 None:intergenic 25.0%
! AAGTATAGATGTACTTCTAA+AGG - chr7_1:68435641-68435660 None:intergenic 25.0%
! TAGAAACTAGTTATGTTACA+AGG - chr7_1:68435833-68435852 None:intergenic 25.0%
! AAAGAGTAAAATAAGATGCT+CGG + chr7_1:68436222-68436241 Msa1033410:CDS 25.0%
!! CAAGAATTAACTCTTTAAAG+TGG - chr7_1:68436437-68436456 None:intergenic 25.0%
! TACATTTGACATAGCATATT+AGG - chr7_1:68436898-68436917 None:intergenic 25.0%
! TAATTTCATAAATTCTTCCC+AGG + chr7_1:68436971-68436990 Msa1033410:intron 25.0%
! AATTTCATAAATTCTTCCCA+GGG + chr7_1:68436972-68436991 Msa1033410:intron 25.0%
!! AATAGTCAATAATTTTTGCG+AGG + chr7_1:68437294-68437313 Msa1033410:intron 25.0%
!!! TTTTTTCTCATCCATATTTG+GGG - chr7_1:68437403-68437422 None:intergenic 25.0%
!!! CTTTTTTCTCATCCATATTT+GGG - chr7_1:68437404-68437423 None:intergenic 25.0%
!!! ACTTTTTTCTCATCCATATT+TGG - chr7_1:68437405-68437424 None:intergenic 25.0%
!!! AGAATTGTTGTTTGCATTTT+GGG - chr7_1:68437810-68437829 None:intergenic 25.0%
! ACATTAAATTGCTATCTAAG+TGG + chr7_1:68437945-68437964 Msa1033410:three_prime_UTR 25.0%
!!! TTACATGTGTTTTAATTTCC+AGG - chr7_1:68438217-68438236 None:intergenic 25.0%
!! GTTGTTTTGTCAAGTTTTGA+TGG - chr7_1:68433895-68433914 None:intergenic 30.0%
! AGAAATTTGGGATTGAAAGT+TGG + chr7_1:68433971-68433990 Msa1033410:five_prime_UTR 30.0%
! AAATTTGTTCTTTCCATCGT+TGG + chr7_1:68434033-68434052 Msa1033410:five_prime_UTR 30.0%
ATTAATCCAACGTTGTACAT+AGG + chr7_1:68434056-68434075 Msa1033410:five_prime_UTR 30.0%
ACCATGTAAATAGCGAAAAA+GGG + chr7_1:68434252-68434271 Msa1033410:intron 30.0%
AATCCAATCCAAAACGAAAA+GGG - chr7_1:68434312-68434331 None:intergenic 30.0%
AAATCCAATCCAAAACGAAA+AGG - chr7_1:68434313-68434332 None:intergenic 30.0%
TTAGTGTACAAAGCGAAATA+GGG - chr7_1:68434360-68434379 None:intergenic 30.0%
TTTAGTGTACAAAGCGAAAT+AGG - chr7_1:68434361-68434380 None:intergenic 30.0%
AATGAATGACTCTCACATTA+AGG - chr7_1:68434400-68434419 None:intergenic 30.0%
!! AGTGTTTTCTTTGGTTAGTT+AGG + chr7_1:68434476-68434495 Msa1033410:intron 30.0%
GTTAGGTTCAGAAGAATTTA+AGG + chr7_1:68434493-68434512 Msa1033410:intron 30.0%
TGTTGTTACTAGTTGTTTGT+TGG + chr7_1:68434555-68434574 Msa1033410:intron 30.0%
AACACAACTCAATCATAGAA+CGG - chr7_1:68434964-68434983 None:intergenic 30.0%
GAAACATCAGCACTTAAAAA+GGG - chr7_1:68435047-68435066 None:intergenic 30.0%
AGAAACATCAGCACTTAAAA+AGG - chr7_1:68435048-68435067 None:intergenic 30.0%
! TAATTAACTGCTGCATCTTT+TGG + chr7_1:68435139-68435158 Msa1033410:five_prime_UTR 30.0%
! AATTAACTGCTGCATCTTTT+GGG + chr7_1:68435140-68435159 Msa1033410:five_prime_UTR 30.0%
GAAATCATGAATAACATTGC+TGG + chr7_1:68435166-68435185 Msa1033410:exon 30.0%
TCTTCTAAATCTCCATTAAG+TGG - chr7_1:68435196-68435215 None:intergenic 30.0%
CTTATACAGAAGATAGATCA+TGG + chr7_1:68435266-68435285 Msa1033410:CDS 30.0%
ACGATACTTATACATTGTTG+TGG + chr7_1:68435423-68435442 Msa1033410:CDS 30.0%
TAGTTTCTAACATCATGTGA+AGG + chr7_1:68435844-68435863 Msa1033410:intron 30.0%
! AAAGCTTTGATATGTGATTC+AGG - chr7_1:68436031-68436050 None:intergenic 30.0%
! ATCACATATCAAAGCTTTGA+TGG + chr7_1:68436033-68436052 Msa1033410:CDS 30.0%
! TCACATATCAAAGCTTTGAT+GGG + chr7_1:68436034-68436053 Msa1033410:CDS 30.0%
!! AAGTTCTAGTGCATTTTGTA+GGG - chr7_1:68436086-68436105 None:intergenic 30.0%
CTAAATCAAATCCCATCATA+TGG + chr7_1:68436118-68436137 Msa1033410:CDS 30.0%
AAAAATGCTGACACATTCTA+AGG - chr7_1:68436370-68436389 None:intergenic 30.0%
TACGGCTAATTTGATTAAGA+TGG + chr7_1:68436494-68436513 Msa1033410:CDS 30.0%
ACGGCTAATTTGATTAAGAT+GGG + chr7_1:68436495-68436514 Msa1033410:CDS 30.0%
ATGACATGTACAAATTGCAA+CGG - chr7_1:68436547-68436566 None:intergenic 30.0%
AATTTGTACATGTCATGAAG+AGG + chr7_1:68436551-68436570 Msa1033410:CDS 30.0%
!! AACAAGTATTGGGAAAACTA+TGG - chr7_1:68436758-68436777 None:intergenic 30.0%
! AGTTTTCCCAATACTTGTTT+TGG + chr7_1:68436759-68436778 Msa1033410:CDS 30.0%
TGACAACCAAAACAAGTATT+GGG - chr7_1:68436768-68436787 None:intergenic 30.0%
TTGACAACCAAAACAAGTAT+TGG - chr7_1:68436769-68436788 None:intergenic 30.0%
ATCTTCAAGAATAAATCCCT+GGG - chr7_1:68436991-68437010 None:intergenic 30.0%
AATCTTCAAGAATAAATCCC+TGG - chr7_1:68436992-68437011 None:intergenic 30.0%
ATGACCTAACCATTGTAAAA+GGG + chr7_1:68437097-68437116 Msa1033410:intron 30.0%
! TAATCCCTTTTACAATGGTT+AGG - chr7_1:68437104-68437123 None:intergenic 30.0%
AGTATGAAAGCTATGTTTGA+TGG + chr7_1:68437359-68437378 Msa1033410:intron 30.0%
TATGGATGAGAAAAAAGTCA+TGG + chr7_1:68437407-68437426 Msa1033410:intron 30.0%
!! TCATGGTTTGTTAAAGTAAC+AGG + chr7_1:68437424-68437443 Msa1033410:intron 30.0%
AGACACAGTACTCAATTATT+TGG - chr7_1:68437508-68437527 None:intergenic 30.0%
!!! CAGAATTGTTGTTTGCATTT+TGG - chr7_1:68437811-68437830 None:intergenic 30.0%
! AATTTAATGTCGAGAGCATA+GGG - chr7_1:68437935-68437954 None:intergenic 30.0%
!! TTGTCAAGTTTTGATGGATG+TGG - chr7_1:68433889-68433908 None:intergenic 35.0%
TGGCTGATAGTTGAGAAATT+TGG + chr7_1:68433958-68433977 Msa1033410:five_prime_UTR 35.0%
GGCTGATAGTTGAGAAATTT+GGG + chr7_1:68433959-68433978 Msa1033410:five_prime_UTR 35.0%
ATACAATCAGTTTAGGGGAT+TGG - chr7_1:68434216-68434235 None:intergenic 35.0%
CACCATGTAAATAGCGAAAA+AGG + chr7_1:68434251-68434270 Msa1033410:intron 35.0%
!! ACCCTTTTTCGCTATTTACA+TGG - chr7_1:68434256-68434275 None:intergenic 35.0%
!! TAACCCTTTTCGTTTTGGAT+TGG + chr7_1:68434306-68434325 Msa1033410:intron 35.0%
TGCAGAGTGAAAAACAAAGA+AGG - chr7_1:68434429-68434448 None:intergenic 35.0%
TTCAGAAGAATTTAAGGGTG+AGG + chr7_1:68434499-68434518 Msa1033410:intron 35.0%
GGGTGAGGATATATATTCAT+AGG + chr7_1:68434514-68434533 Msa1033410:intron 35.0%
ATTACTGAATGCCAACACTA+TGG + chr7_1:68435020-68435039 Msa1033410:intron 35.0%
TTAAAAAGGGACCATAGTGT+TGG - chr7_1:68435034-68435053 None:intergenic 35.0%
GAAGATGAAGCTAATGATGA+CGG + chr7_1:68435223-68435242 Msa1033410:CDS 35.0%
ATAAAACCAATACCTTGGAC+AGG - chr7_1:68435450-68435469 None:intergenic 35.0%
GAAAATTGGGGTTCAATTAG+AGG + chr7_1:68435532-68435551 Msa1033410:intron 35.0%
! TAGTCGCACTAATTTTCATG+TGG + chr7_1:68435692-68435711 Msa1033410:intron 35.0%
! AGCAGGTTGAGTTATTTATC+AGG + chr7_1:68435915-68435934 Msa1033410:CDS 35.0%
! GCAGGTTGAGTTATTTATCA+GGG + chr7_1:68435916-68435935 Msa1033410:CDS 35.0%
!! CAAGTTCTAGTGCATTTTGT+AGG - chr7_1:68436087-68436106 None:intergenic 35.0%
AAAATAAGATGCTCGGTCAT+TGG + chr7_1:68436229-68436248 Msa1033410:CDS 35.0%
ATGATATGACCTTGCCAAAT+GGG - chr7_1:68436676-68436695 None:intergenic 35.0%
!!! CTTGGATCATTTTGAGATGA+TGG - chr7_1:68436735-68436754 None:intergenic 35.0%
AGACTCATGATACTGCTTAA+AGG + chr7_1:68436917-68436936 Msa1033410:intron 35.0%
GACTCATGATACTGCTTAAA+GGG + chr7_1:68436918-68436937 Msa1033410:intron 35.0%
CATGACCTAACCATTGTAAA+AGG + chr7_1:68437096-68437115 Msa1033410:intron 35.0%
! GTTGCTAATCCCTTTTACAA+TGG - chr7_1:68437109-68437128 None:intergenic 35.0%
CTCAATGCTAGTATCTTACA+AGG + chr7_1:68437234-68437253 Msa1033410:intron 35.0%
! TATTGACTATTACAGGCTCA+CGG - chr7_1:68437285-68437304 None:intergenic 35.0%
!! TGGTTTGTTAAAGTAACAGG+TGG + chr7_1:68437427-68437446 Msa1033410:intron 35.0%
AACCTGTAAAAGCAGTGTTT+GGG - chr7_1:68437750-68437769 None:intergenic 35.0%
AAACCTGTAAAAGCAGTGTT+TGG - chr7_1:68437751-68437770 None:intergenic 35.0%
!! AACACTGCTTTTACAGGTTT+TGG + chr7_1:68437751-68437770 Msa1033410:intron 35.0%
GAATGTACATGTCACAATCA+AGG - chr7_1:68437834-68437853 None:intergenic 35.0%
! CAATTTAATGTCGAGAGCAT+AGG - chr7_1:68437936-68437955 None:intergenic 35.0%
GATGCAACATCACAATAACA+GGG - chr7_1:68437986-68438005 None:intergenic 35.0%
!! ATTTTGATCAGGTGATCAGA+TGG - chr7_1:68438062-68438081 None:intergenic 35.0%
! GCAAAGCATTTACTGCTTAA+GGG - chr7_1:68438090-68438109 None:intergenic 35.0%
CTTAAGCAGTAAATGCTTTG+CGG + chr7_1:68438089-68438108 Msa1033410:three_prime_UTR 35.0%
TTAAGCAGTAAATGCTTTGC+GGG + chr7_1:68438090-68438109 Msa1033410:three_prime_UTR 35.0%
! TTCCTTCTTTTGTTCTTTCC+TGG + chr7_1:68438196-68438215 Msa1033410:three_prime_UTR 35.0%
TTCCAGGAAAGAACAAAAGA+AGG - chr7_1:68438201-68438220 None:intergenic 35.0%
AAATACTTTGCTGGCAACAA+CGG - chr7_1:68438318-68438337 None:intergenic 35.0%
ATCAACGGTGATGAATGTTG+AGG - chr7_1:68433939-68433958 None:intergenic 40.0%
TCAACATTCATCACCGTTGA+TGG + chr7_1:68433938-68433957 Msa1033410:five_prime_UTR 40.0%
TCTCAACTATCAGCCATCAA+CGG - chr7_1:68433954-68433973 None:intergenic 40.0%
ACGTTGGATTAATCCAACGA+TGG - chr7_1:68434049-68434068 None:intergenic 40.0%
TCAGTTTAGGGGATTGGATT+TGG - chr7_1:68434210-68434229 None:intergenic 40.0%
! CTAGGTAACCCTTTTCGTTT+TGG + chr7_1:68434301-68434320 Msa1033410:intron 40.0%
! AGTTGTTTGTTGGAACATGC+TGG + chr7_1:68434565-68434584 Msa1033410:intron 40.0%
! GTTGTTTGTTGGAACATGCT+GGG + chr7_1:68434566-68434585 Msa1033410:intron 40.0%
AGTTGCATTGCAATGTCTGA+GGG + chr7_1:68434619-68434638 Msa1033410:intron 40.0%
AGAAAACGAGGTTCAAAGTG+AGG - chr7_1:68434849-68434868 None:intergenic 40.0%
TCTTTGCAGGAAGATGAATC+TGG + chr7_1:68435292-68435311 Msa1033410:CDS 40.0%
TGAATGGCTGTCGTATCTAT+GGG - chr7_1:68435328-68435347 None:intergenic 40.0%
ATGAATGGCTGTCGTATCTA+TGG - chr7_1:68435329-68435348 None:intergenic 40.0%
ATTGGGGTTCAATTAGAGGT+TGG + chr7_1:68435536-68435555 Msa1033410:intron 40.0%
TTGGGGTTCAATTAGAGGTT+GGG + chr7_1:68435537-68435556 Msa1033410:intron 40.0%
CAATTAGAGGTTGGGTATGT+TGG + chr7_1:68435545-68435564 Msa1033410:intron 40.0%
GCAATAACAGCCATTCTACT+TGG - chr7_1:68435893-68435912 None:intergenic 40.0%
AATGGCTGTTATTGCAAAGC+AGG + chr7_1:68435898-68435917 Msa1033410:CDS 40.0%
CAGAATCCACTTAGTCATGT+TGG + chr7_1:68435950-68435969 Msa1033410:CDS 40.0%
! TCCACTTAGTCATGTTGGTT+TGG + chr7_1:68435955-68435974 Msa1033410:CDS 40.0%
ACCAAACCAACATGACTAAG+TGG - chr7_1:68435959-68435978 None:intergenic 40.0%
! GTTTGGTGACTACCAAAGAT+GGG + chr7_1:68435972-68435991 Msa1033410:CDS 40.0%
! TTTGGTGACTACCAAAGATG+GGG + chr7_1:68435973-68435992 Msa1033410:CDS 40.0%
GCTAATTGCTTGACAGATCT+TGG + chr7_1:68435998-68436017 Msa1033410:CDS 40.0%
AATTGCTTGACAGATCTTGG+TGG + chr7_1:68436001-68436020 Msa1033410:CDS 40.0%
ATGGGTAAACTAGAATGCTC+AGG + chr7_1:68436052-68436071 Msa1033410:CDS 40.0%
! TTCTAGTGCATTTTGTAGGG+AGG - chr7_1:68436083-68436102 None:intergenic 40.0%
CTTCTCGATGACCATATGAT+GGG - chr7_1:68436132-68436151 None:intergenic 40.0%
ACTTCTCGATGACCATATGA+TGG - chr7_1:68436133-68436152 None:intergenic 40.0%
ATAGTTTCCATGAGATCACC+AGG - chr7_1:68436190-68436209 None:intergenic 40.0%
AAGCATCTTTGCCAAGAAAC+TGG + chr7_1:68436277-68436296 Msa1033410:CDS 40.0%
AATACGTTCCTCCAGTTTCT+TGG - chr7_1:68436291-68436310 None:intergenic 40.0%
GTATTCAGTTGCACTAGATG+AGG + chr7_1:68436306-68436325 Msa1033410:CDS 40.0%
AGCAATAGCAGAGTATGCTA+CGG + chr7_1:68436476-68436495 Msa1033410:CDS 40.0%
CAAATGGGGCGAAGAAATAA+GGG - chr7_1:68436661-68436680 None:intergenic 40.0%
TGATATGACCTTGCCAAATG+GGG - chr7_1:68436675-68436694 None:intergenic 40.0%
GATGATATGACCTTGCCAAA+TGG - chr7_1:68436677-68436696 None:intergenic 40.0%
TCTCAGCAAATGGCACTATA+GGG - chr7_1:68436707-68436726 None:intergenic 40.0%
ATCTCAGCAAATGGCACTAT+AGG - chr7_1:68436708-68436727 None:intergenic 40.0%
GTATTGGGAAAACTATGGCT+TGG - chr7_1:68436753-68436772 None:intergenic 40.0%
TCAACAAAGTCTCCTTAGTC+AGG + chr7_1:68436785-68436804 Msa1033410:CDS 40.0%
CAACAAAGTCTCCTTAGTCA+GGG + chr7_1:68436786-68436805 Msa1033410:CDS 40.0%
AAGGTGGTTAACAGGGAATA+AGG - chr7_1:68437135-68437154 None:intergenic 40.0%
AACTCACAAGGTGGTTAACA+GGG - chr7_1:68437142-68437161 None:intergenic 40.0%
AACTAGAGCTACAACTCACA+AGG - chr7_1:68437154-68437173 None:intergenic 40.0%
GCATTGAGACACTTTAGCAT+GGG - chr7_1:68437222-68437241 None:intergenic 40.0%
! AGCATTGAGACACTTTAGCA+TGG - chr7_1:68437223-68437242 None:intergenic 40.0%
TTGCGAGGCATAAAAGTCTT+AGG + chr7_1:68437309-68437328 Msa1033410:intron 40.0%
ACACAGTTGTACCCCAAATA+TGG + chr7_1:68437389-68437408 Msa1033410:intron 40.0%
TACTGTATATTCTCAGCAGC+GGG - chr7_1:68437631-68437650 None:intergenic 40.0%
CTACTGTATATTCTCAGCAG+CGG - chr7_1:68437632-68437651 None:intergenic 40.0%
!! TTCCCAAACACTGCTTTTAC+AGG + chr7_1:68437745-68437764 Msa1033410:intron 40.0%
! TTTGCATTTTGGGCAAGAGA+CGG - chr7_1:68437800-68437819 None:intergenic 40.0%
GCATAGGGCTGAAAATCATT+GGG - chr7_1:68437920-68437939 None:intergenic 40.0%
AGCATAGGGCTGAAAATCAT+TGG - chr7_1:68437921-68437940 None:intergenic 40.0%
GGATGCAACATCACAATAAC+AGG - chr7_1:68437987-68438006 None:intergenic 40.0%
!! TAAGGGCTTGCATTTTGATC+AGG - chr7_1:68438073-68438092 None:intergenic 40.0%
! CGCAAAGCATTTACTGCTTA+AGG - chr7_1:68438091-68438110 None:intergenic 40.0%
AACGGTGATGAATGTTGAGG+CGG - chr7_1:68433936-68433955 None:intergenic 45.0%
!! TTGGGATTGAAAGTTGGTGC+TGG + chr7_1:68433977-68433996 Msa1033410:five_prime_UTR 45.0%
!! TGGGATTGAAAGTTGGTGCT+GGG + chr7_1:68433978-68433997 Msa1033410:five_prime_UTR 45.0%
TGTTGACAGCCATACCTCAA+CGG - chr7_1:68434180-68434199 None:intergenic 45.0%
CAGTTGCATTGCAATGTCTG+AGG + chr7_1:68434618-68434637 Msa1033410:intron 45.0%
TTCCACTACTAGCATAACCC+TGG - chr7_1:68434693-68434712 None:intergenic 45.0%
ATTGCTGGGAGACCACTTAA+TGG + chr7_1:68435181-68435200 Msa1033410:CDS 45.0%
TAGATCATGGGAGTCTTTGC+AGG + chr7_1:68435279-68435298 Msa1033410:CDS 45.0%
ACGATACTGGGCATGATGAA+TGG - chr7_1:68435344-68435363 None:intergenic 45.0%
AGTAGCTGCATTGGAAGCAA+GGG - chr7_1:68435380-68435399 None:intergenic 45.0%
AGCTACTGCGCGAATTCAAA+AGG + chr7_1:68435393-68435412 Msa1033410:CDS 45.0%
GCTACTGCGCGAATTCAAAA+GGG + chr7_1:68435394-68435413 Msa1033410:CDS 45.0%
GGACTTTCGACCAAGTAGAA+TGG + chr7_1:68435880-68435899 Msa1033410:CDS 45.0%
!! GGTTTGGTGACTACCAAAGA+TGG + chr7_1:68435971-68435990 Msa1033410:CDS 45.0%
GCAATTAGCTACCCCATCTT+TGG - chr7_1:68435987-68436006 None:intergenic 45.0%
ACCAGGATCACATGTACTGA+GGG - chr7_1:68436173-68436192 None:intergenic 45.0%
ATGTGATCCTGGTGATCTCA+TGG + chr7_1:68436180-68436199 Msa1033410:CDS 45.0%
CATCTTTGCCAAGAAACTGG+AGG + chr7_1:68436280-68436299 Msa1033410:CDS 45.0%
GACTGCACGAGATGTATACA+TGG - chr7_1:68436414-68436433 None:intergenic 45.0%
GTAGCATACTCTGCTATTGC+TGG - chr7_1:68436477-68436496 None:intergenic 45.0%
TGTCATGAAGAGGCCAAAAC+TGG + chr7_1:68436561-68436580 Msa1033410:CDS 45.0%
ATGAAGAGGCCAAAACTGGA+GGG + chr7_1:68436565-68436584 Msa1033410:CDS 45.0%
CAGACACGAACTTTGCATCT+TGG - chr7_1:68436603-68436622 None:intergenic 45.0%
CCAAATGGGGCGAAGAAATA+AGG - chr7_1:68436662-68436681 None:intergenic 45.0%
! CCTTATTTCTTCGCCCCATT+TGG + chr7_1:68436659-68436678 Msa1033410:CDS 45.0%
GATGGAGAGATCTCAGCAAA+TGG - chr7_1:68436717-68436736 None:intergenic 45.0%
CAACTCACAAGGTGGTTAAC+AGG - chr7_1:68437143-68437162 None:intergenic 45.0%
TAGAGCTACAACTCACAAGG+TGG - chr7_1:68437151-68437170 None:intergenic 45.0%
CAATCCACAATCCAACTGCT+TGG + chr7_1:68437185-68437204 Msa1033410:intron 45.0%
AAGTAACAGGTGGATGACAG+TGG + chr7_1:68437437-68437456 Msa1033410:intron 45.0%
!!! GCTTTTACAGGTTTTGGAGC+AGG + chr7_1:68437757-68437776 Msa1033410:intron 45.0%
!!! AGGTTTTGGAGCAGGAAACA+AGG + chr7_1:68437765-68437784 Msa1033410:intron 45.0%
GAGAGCTTACATAATTGCCC+AGG + chr7_1:68437856-68437875 Msa1033410:CDS 45.0%
GCAACATCACAATAACAGGG+AGG - chr7_1:68437983-68438002 None:intergenic 45.0%
GTGATGTTGCATCCATCTAC+CGG + chr7_1:68437993-68438012 Msa1033410:three_prime_UTR 45.0%
TTGTTCATGAGTCCGGTAGA+TGG - chr7_1:68438008-68438027 None:intergenic 45.0%
ACAAGTTCCGGTCCATGAAA+CGG + chr7_1:68438024-68438043 Msa1033410:three_prime_UTR 45.0%
ATCAGGTGATCAGATGGTGT+TGG - chr7_1:68438056-68438075 None:intergenic 45.0%
AAATTGCAAGGGAGACATGC+TGG - chr7_1:68438271-68438290 None:intergenic 45.0%
TTCGTCGGAGTGAGTTTCGA+TGG - chr7_1:68433849-68433868 None:intergenic 50.0%
! GTGCTGCTCTTCATCTTCGT+CGG - chr7_1:68433864-68433883 None:intergenic 50.0%
AATGTTGAGGCGGTGGTTGA+AGG - chr7_1:68433926-68433945 None:intergenic 50.0%
TTCGCGCCTATGTACAACGT+TGG - chr7_1:68434065-68434084 None:intergenic 50.0%
CAGCAGTGCATGGACAATCT+CGG - chr7_1:68434089-68434108 None:intergenic 50.0%
ACACAGTTCACAGCAGTGCA+TGG - chr7_1:68434099-68434118 None:intergenic 50.0%
TGATCGGAGAAGCTTAGTGG+CGG - chr7_1:68434157-68434176 None:intergenic 50.0%
AGCCATACCTCAACGGTGAT+CGG - chr7_1:68434173-68434192 None:intergenic 50.0%
GGAACATGCTGGGTTGTTTG+TGG + chr7_1:68434576-68434595 Msa1033410:intron 50.0%
TGCAATGTCTGAGGGAACAC+CGG + chr7_1:68434627-68434646 Msa1033410:intron 50.0%
CACTACTAGCATAACCCTGG+CGG - chr7_1:68434690-68434709 None:intergenic 50.0%
ACTGTTGCAGCTTCTTCGCT+TGG + chr7_1:68435115-68435134 Msa1033410:intron 50.0%
!! ATGATGACGGCCTTGAAGCA+TGG + chr7_1:68435236-68435255 Msa1033410:CDS 50.0%
!! TGATGACGGCCTTGAAGCAT+GGG + chr7_1:68435237-68435256 Msa1033410:CDS 50.0%
AAGCTCTCTCCCATGCTTCA+AGG - chr7_1:68435249-68435268 None:intergenic 50.0%
CAGTAGCTGCATTGGAAGCA+AGG - chr7_1:68435381-68435400 None:intergenic 50.0%
AATTCGCGCAGTAGCTGCAT+TGG - chr7_1:68435389-68435408 None:intergenic 50.0%
CATTGTTGTGGACCTGTCCA+AGG + chr7_1:68435435-68435454 Msa1033410:CDS 50.0%
TGTGGACCTGTCCAAGGTAT+TGG + chr7_1:68435441-68435460 Msa1033410:intron 50.0%
ATGTGAAGGCAGCTTCAGAG+AGG + chr7_1:68435858-68435877 Msa1033410:intron 50.0%
TGTGAAGGCAGCTTCAGAGA+GGG + chr7_1:68435859-68435878 Msa1033410:intron 50.0%
CACCAGGATCACATGTACTG+AGG - chr7_1:68436174-68436193 None:intergenic 50.0%
TACTCTGCTATTGCTGGAGG+TGG - chr7_1:68436471-68436490 None:intergenic 50.0%
GCATACTCTGCTATTGCTGG+AGG - chr7_1:68436474-68436493 None:intergenic 50.0%
CATGAAGAGGCCAAAACTGG+AGG + chr7_1:68436564-68436583 Msa1033410:CDS 50.0%
TGAAGAGGCCAAAACTGGAG+GGG + chr7_1:68436566-68436585 Msa1033410:CDS 50.0%
! AGTGTATCCCCCTCCAGTTT+TGG - chr7_1:68436577-68436596 None:intergenic 50.0%
TAAGGGTCAATCCACAGACG+CGG - chr7_1:68436644-68436663 None:intergenic 50.0%
TTTCTTCGCCCCATTTGGCA+AGG + chr7_1:68436664-68436683 Msa1033410:CDS 50.0%
GCAGATGCTTACCCTGACTA+AGG - chr7_1:68436800-68436819 None:intergenic 50.0%
CTTTAGCATGGGCACATTGC+AGG - chr7_1:68437211-68437230 None:intergenic 50.0%
! CCGGAACTTGTTCATGAGTC+CGG - chr7_1:68438015-68438034 None:intergenic 50.0%
CCGGACTCATGAACAAGTTC+CGG + chr7_1:68438012-68438031 Msa1033410:three_prime_UTR 50.0%
CAAGTTCCGGTCCATGAAAC+GGG + chr7_1:68438025-68438044 Msa1033410:three_prime_UTR 50.0%
TGTTGGTCAGTCCCGTTTCA+TGG - chr7_1:68438039-68438058 None:intergenic 50.0%
GGTGATGAATGTTGAGGCGG+TGG - chr7_1:68433933-68433952 None:intergenic 55.0%
GAGAAGCTTAGTGGCGGCAA+GGG - chr7_1:68434151-68434170 None:intergenic 55.0%
CGGTGATCGGAGAAGCTTAG+TGG - chr7_1:68434160-68434179 None:intergenic 55.0%
AGCTTCTCCGATCACCGTTG+AGG + chr7_1:68434163-68434182 Msa1033410:five_prime_UTR 55.0%
CTCCGATCACCGTTGAGGTA+TGG + chr7_1:68434168-68434187 Msa1033410:intron 55.0%
ATGTCTGAGGGAACACCGGT+TGG + chr7_1:68434631-68434650 Msa1033410:intron 55.0%
! TGTCTGAGGGAACACCGGTT+GGG + chr7_1:68434632-68434651 Msa1033410:intron 55.0%
!!! GCAGGGCAGGTGGTTTTATG+AGG + chr7_1:68434656-68434675 Msa1033410:intron 55.0%
TATGAGGCAAAGACACCGCC+AGG + chr7_1:68434672-68434691 Msa1033410:intron 55.0%
ATGAGGCAAAGACACCGCCA+GGG + chr7_1:68434673-68434692 Msa1033410:intron 55.0%
CGCCAGGGTTATGCTAGTAG+TGG + chr7_1:68434688-68434707 Msa1033410:intron 55.0%
GCCCTCAGTACATGTGATCC+TGG + chr7_1:68436169-68436188 Msa1033410:CDS 55.0%
TCTGCTATTGCTGGAGGTGG+TGG - chr7_1:68436468-68436487 None:intergenic 55.0%
GAAGAGGCCAAAACTGGAGG+GGG + chr7_1:68436567-68436586 Msa1033410:CDS 55.0%
CAGGCCAAGCAGTTGGATTG+TGG - chr7_1:68437192-68437211 None:intergenic 55.0%
CACATTGCAGGCCAAGCAGT+TGG - chr7_1:68437199-68437218 None:intergenic 55.0%
GTCAGTCCCGTTTCATGGAC+CGG - chr7_1:68438034-68438053 None:intergenic 55.0%
GCAGTAAATGCTTTGCGGGC+TGG + chr7_1:68438094-68438113 Msa1033410:three_prime_UTR 55.0%
GTTGAGGCGGTGGTTGAAGG+AGG - chr7_1:68433923-68433942 None:intergenic 60.0%
GGAGAAGCTTAGTGGCGGCA+AGG - chr7_1:68434152-68434171 None:intergenic 60.0%
! GTCTGAGGGAACACCGGTTG+GGG + chr7_1:68434633-68434652 Msa1033410:intron 60.0%
! TCTGAGGGAACACCGGTTGG+GGG + chr7_1:68434634-68434653 Msa1033410:intron 60.0%
!! GCGGAGGCGTCTACGATACT+GGG - chr7_1:68435356-68435375 None:intergenic 60.0%
CTGCATTGGAAGCAAGGGCG+CGG - chr7_1:68435375-68435394 None:intergenic 60.0%
TTTCCCGCAGAGAGCAGCTG+AGG + chr7_1:68436518-68436537 Msa1033410:CDS 60.0%
TTCCCGCAGAGAGCAGCTGA+GGG + chr7_1:68436519-68436538 Msa1033410:CDS 60.0%
AACCCTCAGCTGCTCTCTGC+GGG - chr7_1:68436524-68436543 None:intergenic 60.0%
GAACCCTCAGCTGCTCTCTG+CGG - chr7_1:68436525-68436544 None:intergenic 60.0%
CCACAGACGCGGCATTCAGT+AGG - chr7_1:68436633-68436652 None:intergenic 60.0%
CCTACTGAATGCCGCGTCTG+TGG + chr7_1:68436630-68436649 Msa1033410:CDS 60.0%
GCCTGAAGCTCTCACAGCCT+GGG - chr7_1:68437876-68437895 None:intergenic 60.0%
TGCCTGAAGCTCTCACAGCC+TGG - chr7_1:68437877-68437896 None:intergenic 60.0%
TTAGTGGCGGCAAGGGCGAC+GGG - chr7_1:68434144-68434163 None:intergenic 65.0%
CTTAGTGGCGGCAAGGGCGA+CGG - chr7_1:68434145-68434164 None:intergenic 65.0%
!! CGCGGAGGCGTCTACGATAC+TGG - chr7_1:68435357-68435376 None:intergenic 65.0%
! CATTGGAAGCAAGGGCGCGG+AGG - chr7_1:68435372-68435391 None:intergenic 65.0%
GCCCAGGCTGTGAGAGCTTC+AGG + chr7_1:68437872-68437891 Msa1033410:CDS 65.0%
TAGTGGCGGCAAGGGCGACG+GGG - chr7_1:68434143-68434162 None:intergenic 70.0%
! AGGGAACACCGGTTGGGGGC+AGG + chr7_1:68434638-68434657 Msa1033410:intron 70.0%
! GGGAACACCGGTTGGGGGCA+GGG + chr7_1:68434639-68434658 Msa1033410:intron 70.0%
AGGGCGACGGGGCTCAGCGT+TGG - chr7_1:68434132-68434151 None:intergenic 75.0%
! ACACCGGTTGGGGGCAGGGC+AGG + chr7_1:68434643-68434662 Msa1033410:intron 75.0%
CCACCTGCCCTGCCCCCAAC+CGG - chr7_1:68434649-68434668 None:intergenic 75.0%
! CCGGTTGGGGGCAGGGCAGG+TGG + chr7_1:68434646-68434665 Msa1033410:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 68433837 68438350 68433837 ID=Msa1033410;Name=Msa1033410
chr7_1 mRNA 68433837 68438350 68433837 ID=Msa1033410-mRNA-1;Parent=Msa1033410;Name=Msa1033410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=395|1|1|1|0.75|0.8|5|426|426
chr7_1 exon 68433837 68434184 68433837 ID=Msa1033410-mRNA-1:exon:15982;Parent=Msa1033410-mRNA-1
chr7_1 exon 68435125 68435456 68435125 ID=Msa1033410-mRNA-1:exon:15983;Parent=Msa1033410-mRNA-1
chr7_1 exon 68435866 68436327 68435866 ID=Msa1033410-mRNA-1:exon:15984;Parent=Msa1033410-mRNA-1
chr7_1 exon 68436432 68436807 68436432 ID=Msa1033410-mRNA-1:exon:15985;Parent=Msa1033410-mRNA-1
chr7_1 exon 68437767 68438350 68437767 ID=Msa1033410-mRNA-1:exon:15986;Parent=Msa1033410-mRNA-1
chr7_1 five_prime_UTR 68433837 68434184 68433837 ID=Msa1033410-mRNA-1:five_prime_utr;Parent=Msa1033410-mRNA-1
chr7_1 five_prime_UTR 68435125 68435171 68435125 ID=Msa1033410-mRNA-1:five_prime_utr;Parent=Msa1033410-mRNA-1
chr7_1 CDS 68435172 68435456 68435172 ID=Msa1033410-mRNA-1:cds;Parent=Msa1033410-mRNA-1
chr7_1 CDS 68435866 68436327 68435866 ID=Msa1033410-mRNA-1:cds;Parent=Msa1033410-mRNA-1
chr7_1 CDS 68436432 68436807 68436432 ID=Msa1033410-mRNA-1:cds;Parent=Msa1033410-mRNA-1
chr7_1 CDS 68437767 68437924 68437767 ID=Msa1033410-mRNA-1:cds;Parent=Msa1033410-mRNA-1
chr7_1 three_prime_UTR 68437925 68438350 68437925 ID=Msa1033410-mRNA-1:three_prime_utr;Parent=Msa1033410-mRNA-1
Gene Sequence

>Msa1033410

ATGAATAACATTGCTGGGAGACCACTTAATGGAGATTTAGAAGATGATGATGAAGATGAAGCTAATGATGACGGCCTTGAAGCATGGGAGAGAGCTTATACAGAAGATAGATCATGGGAGTCTTTGCAGGAAGATGAATCTGGACTTCTTCGTCCCATAGATACGACAGCCATTCATCATGCCCAGTATCGTAGACGCCTCCGCGCCCTTGCTTCCAATGCAGCTACTGCGCGAATTCAAAAGGGTTTGATACGATACTTATACATTGTTGTGGACCTGTCCAAGGCAGCTTCAGAGAGGGACTTTCGACCAAGTAGAATGGCTGTTATTGCAAAGCAGGTTGAGTTATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGTTTGGTGACTACCAAAGATGGGGTAGCTAATTGCTTGACAGATCTTGGTGGCAGTCCTGAATCACATATCAAAGCTTTGATGGGTAAACTAGAATGCTCAGGTGATGCCTCCCTACAAAATGCACTAGAACTTGTTCATAGCAATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATTTTATATTCGGCCCTCAGTACATGTGATCCTGGTGATCTCATGGAAACTATCCAAAAATGCAAAAAGAGTAAAATAAGATGCTCGGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAGCATCTTTGCCAAGAAACTGGAGGAACGTATTCAGTTGCACTAGATGAGTCCCACTTTAAAGAGTTAATTCTTGAGCATTCTCCACCACCTCCAGCAATAGCAGAGTATGCTACGGCTAATTTGATTAAGATGGGTTTCCCGCAGAGAGCAGCTGAGGGTTCCGTTGCAATTTGTACATGTCATGAAGAGGCCAAAACTGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGCCGCGTCTGTGGATTGACCCTTATTTCTTCGCCCCATTTGGCAAGGTCATATCATCATCTCTTCCCTATAGTGCCATTTGCTGAGATCTCTCCATCATCTCAAAATGATCCAAGCCATAGTTTTCCCAATACTTGTTTTGGTTGTCAACAAAGTCTCCTTAGTCAGGGTTTTGGAGCAGGAAACAAGGCTGAACTTTCCGTCTCTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGTGACATGTACATTCATGAGAGCTTACATAATTGCCCAGGCTGTGAGAGCTTCAGGCATTCTAAGTCAGTTACTACTGCCCAATGA

Protein sequence

>Msa1033410

MNNIAGRPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPSHSFPNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSKSVTTAQ*