Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465040 | XP_003628140.2 | 98.305 | 295 | 5 | 0 | 1 | 295 | 1 | 295 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465040 | sp|Q9ZNT1|NB5R1_ARATH | 67.729 | 251 | 81 | 0 | 45 | 295 | 31 | 281 | 7.45e-131 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465040 | B7FJK4 | 98.305 | 295 | 5 | 0 | 1 | 295 | 1 | 295 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa1465040 | 0.811338 | 7.358044e-51 | -8.615850e-47 |
| Msa0069350 | Msa1465040 | 0.826500 | 2.622274e-54 | -8.615850e-47 |
| Msa0104570 | Msa1465040 | 0.831517 | 1.596385e-55 | -8.615850e-47 |
| Msa1360930 | Msa1465040 | 0.801476 | 8.845174e-49 | -8.615850e-47 |
| Msa1369410 | Msa1465040 | 0.801513 | 8.690965e-49 | -8.615850e-47 |
| Msa0150590 | Msa1465040 | 0.832232 | 1.063279e-55 | -8.615850e-47 |
| Msa1283730 | Msa1465040 | 0.818951 | 1.499536e-52 | -8.615850e-47 |
| Msa0427820 | Msa1465040 | 0.858080 | 1.053015e-62 | -8.615850e-47 |
| Msa0474060 | Msa1465040 | 0.847044 | 1.483108e-59 | -8.615850e-47 |
| Msa1060340 | Msa1465040 | 0.824892 | 6.308459e-54 | -8.615850e-47 |
| Msa0518680 | Msa1465040 | 0.837214 | 5.931552e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465040 | MtrunA17_Chr8g0355241 | 98.305 | 295 | 5 | 0 | 1 | 295 | 1 | 295 | 0.0 | 600 |
| Msa1465040 | MtrunA17_Chr3g0118791 | 67.626 | 278 | 89 | 1 | 19 | 295 | 1 | 278 | 9.94e-142 | 400 |
| Msa1465040 | MtrunA17_Chr7g0254371 | 66.932 | 251 | 83 | 0 | 45 | 295 | 28 | 278 | 1.71e-130 | 372 |
| Msa1465040 | MtrunA17_Chr4g0063451 | 40.678 | 295 | 139 | 7 | 35 | 295 | 33 | 325 | 1.48e-65 | 208 |
| Msa1465040 | MtrunA17_Chr5g0424491 | 39.921 | 253 | 131 | 5 | 55 | 287 | 624 | 875 | 1.81e-51 | 181 |
| Msa1465040 | MtrunA17_Chr3g0115151 | 39.231 | 260 | 133 | 8 | 55 | 291 | 578 | 835 | 7.96e-49 | 173 |
| Msa1465040 | MtrunA17_Chr3g0115131 | 37.066 | 259 | 139 | 6 | 50 | 287 | 612 | 867 | 4.22e-47 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465040 | AT5G17770.1 | 67.729 | 251 | 81 | 0 | 45 | 295 | 31 | 281 | 7.58e-132 | 375 |
| Msa1465040 | AT5G20080.1 | 40.506 | 316 | 156 | 6 | 10 | 295 | 15 | 328 | 2.10e-68 | 216 |
| Msa1465040 | AT1G37130.1 | 37.838 | 259 | 139 | 6 | 56 | 293 | 657 | 914 | 3.48e-48 | 172 |
| Msa1465040 | AT1G77760.1 | 35.178 | 253 | 142 | 6 | 56 | 287 | 657 | 908 | 2.49e-45 | 164 |
Find 71 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTCATTTGTCTAAAA+TGG | 0.154232 | tig0044857:+1902 | Msa1465040:intergenic |
| TGTCTTTCACGTTCTTAATA+AGG | 0.198260 | tig0044857:-850 | Msa1465040:intron |
| GGCAATTAAACCTGGATATC+AGG | 0.207511 | tig0044857:+500 | Msa1465040:intergenic |
| ATTGCACCATTTAGAATTTC+AGG | 0.220278 | tig0044857:+3285 | Msa1465040:intergenic |
| TCCTACTCCTAATTCGATAT+TGG | 0.222016 | tig0044857:-2596 | Msa1465040:CDS |
| ATCACATTGGATTCAGATAT+TGG | 0.246714 | tig0044857:-2105 | Msa1465040:CDS |
| ACACCACCATTCCATTTATT+AGG | 0.270818 | tig0044857:+572 | Msa1465040:intergenic |
| GTTACAAACCTGGTCAAGTT+AGG | 0.279037 | tig0044857:-1689 | Msa1465040:CDS |
| TTTGACAGCCTCCTAATAAA+TGG | 0.283114 | tig0044857:-583 | Msa1465040:intron |
| AGGCATTACCCCAATGTTTC+AGG | 0.287455 | tig0044857:-1640 | Msa1465040:intron |
| GGAAGTCCCAATATCGAATT+AGG | 0.287589 | tig0044857:+2589 | Msa1465040:intergenic |
| CCTGGTCAAGTTAGGGCATT+TGG | 0.298742 | tig0044857:-1681 | Msa1465040:CDS |
| CTGTCACATTGGCGTAAATA+AGG | 0.315077 | tig0044857:+1209 | Msa1465040:intergenic |
| GGAATGATTGCTGGAGGTTC+AGG | 0.322357 | tig0044857:-1660 | Msa1465040:CDS |
| CCTACTCCTAATTCGATATT+GGG | 0.343680 | tig0044857:-2595 | Msa1465040:CDS |
| AATTTGAATCTTGCAGCATT+GGG | 0.356810 | tig0044857:+2625 | Msa1465040:intergenic |
| TTGGAGCCTGAAATTCTAAA+TGG | 0.359265 | tig0044857:-3291 | Msa1465040:CDS |
| TTCATTTGTACCTGAAACAT+TGG | 0.379448 | tig0044857:+1630 | Msa1465040:intergenic |
| TCATTTGTACCTGAAACATT+GGG | 0.390761 | tig0044857:+1631 | Msa1465040:intergenic |
| AGGGCATTTGGAATGATTGC+TGG | 0.412351 | tig0044857:-1669 | Msa1465040:CDS |
| AAATTTGAATCTTGCAGCAT+TGG | 0.413872 | tig0044857:+2624 | Msa1465040:intergenic |
| AGCACCTGCCCCTGATATCC+AGG | 0.426304 | tig0044857:-510 | Msa1465040:intron |
| TTATCTAGGTTACCTTTAGT+AGG | 0.435704 | tig0044857:+1176 | Msa1465040:intergenic |
| TGCAGCATTGGGGCTGATCA+TGG | 0.437050 | tig0044857:+2636 | Msa1465040:intergenic |
| TGGATATCAGGGGCAGGTGC+TGG | 0.440181 | tig0044857:+512 | Msa1465040:intergenic |
| ATATCTGAATCCAATGTGAT+TGG | 0.441409 | tig0044857:+2108 | Msa1465040:intergenic |
| GCAATTGCTCTTGTAGCTGT+TGG | 0.456782 | tig0044857:-3267 | Msa1465040:CDS |
| GGCTCCAAGTTCTGAGCAAA+AGG | 0.457665 | tig0044857:+3306 | Msa1465040:intergenic |
| CCTTCATTTGTCTAAAATGG+TGG | 0.459897 | tig0044857:+1905 | Msa1465040:intergenic |
| CAAATGTGTATTTATAAAGC+AGG | 0.465550 | tig0044857:-3420 | Msa1465040:five_prime_UTR |
| CCAAATGCCCTAACTTGACC+AGG | 0.467529 | tig0044857:+1681 | Msa1465040:intergenic |
| TCGATATTGGGACTTCCTGT+TGG | 0.490436 | tig0044857:-2583 | Msa1465040:CDS |
| TGCAAACAGATGTACCCAAA+TGG | 0.501675 | tig0044857:-1937 | Msa1465040:intron |
| GCAATTAAACCTGGATATCA+GGG | 0.505823 | tig0044857:+501 | Msa1465040:intergenic |
| TTACAAACCTGGTCAAGTTA+GGG | 0.508630 | tig0044857:-1688 | Msa1465040:CDS |
| CTTCATTTGTCTAAAATGGT+GGG | 0.509453 | tig0044857:+1906 | Msa1465040:intergenic |
| AAGCTAAGTGTCATGTTGAA+TGG | 0.510044 | tig0044857:+3351 | Msa1465040:intergenic |
| AGTAAATATAAGCAACCGTT+AGG | 0.512828 | tig0044857:+3244 | Msa1465040:intergenic |
| AGGTGACAACTTGGCCGTGA+AGG | 0.522801 | tig0044857:-1881 | Msa1465040:CDS |
| TCTTGTAGCTGTTGGCCTAA+CGG | 0.523764 | tig0044857:-3259 | Msa1465040:CDS |
| CCACCATTCCATTTATTAGG+AGG | 0.525573 | tig0044857:+575 | Msa1465040:intergenic |
| GGTGACAACTTGGCCGTGAA+GGG | 0.526514 | tig0044857:-1880 | Msa1465040:CDS |
| AATAAATGGAATGGTGGTGT+TGG | 0.539466 | tig0044857:-569 | Msa1465040:CDS |
| GATATCGTCCACTGTCACAT+TGG | 0.541108 | tig0044857:+1198 | Msa1465040:intergenic |
| CTTGGCCGTGAAGGGCCCTA+AGG | 0.541711 | tig0044857:-1872 | Msa1465040:intron |
| AAGTACCTTAGGGCCCTTCA+CGG | 0.543318 | tig0044857:+1867 | Msa1465040:intergenic |
| AATGAAGGAAGGTGACAACT+TGG | 0.552525 | tig0044857:-1890 | Msa1465040:CDS |
| ATAAATGGAATGGTGGTGTT+GGG | 0.556556 | tig0044857:-568 | Msa1465040:CDS |
| AGTGGACGATATCCTACTAA+AGG | 0.561823 | tig0044857:-1188 | Msa1465040:intron |
| TAATAATAACTACACCTTTG+GGG | 0.566489 | tig0044857:+3211 | Msa1465040:intergenic |
| ATCATATACTCCAATCACAT+TGG | 0.569714 | tig0044857:-2118 | Msa1465040:CDS |
| CAGCCTCCTAATAAATGGAA+TGG | 0.578707 | tig0044857:-578 | Msa1465040:CDS |
| TAAACCTGGATATCAGGGGC+AGG | 0.589659 | tig0044857:+506 | Msa1465040:intergenic |
| CAAGTTCTGAGCAAAAGGTA+AGG | 0.593264 | tig0044857:+3311 | Msa1465040:intergenic |
| ATATCGAATTAGGAGTAGGA+AGG | 0.599298 | tig0044857:+2599 | Msa1465040:intergenic |
| CCCAATATCGAATTAGGAGT+AGG | 0.601609 | tig0044857:+2595 | Msa1465040:intergenic |
| GCATTTGGAATGATTGCTGG+AGG | 0.605362 | tig0044857:-1666 | Msa1465040:CDS |
| TATCGAATTAGGAGTAGGAA+GGG | 0.606000 | tig0044857:+2600 | Msa1465040:intergenic |
| CATTTGTACCTGAAACATTG+GGG | 0.612740 | tig0044857:+1632 | Msa1465040:intergenic |
| AAATGTGTATTTATAAAGCA+GGG | 0.612999 | tig0044857:-3419 | Msa1465040:five_prime_UTR |
| TGGTGTTGGGTACATATCAA+AGG | 0.615193 | tig0044857:-555 | Msa1465040:CDS |
| GGACGTTTCAGTTACAAACC+TGG | 0.618497 | tig0044857:-1699 | Msa1465040:CDS |
| TATTAAGAACGTGAAAGACA+TGG | 0.621704 | tig0044857:+853 | Msa1465040:intergenic |
| AGCAGAGGAAGAGATAGTCA+AGG | 0.623400 | tig0044857:-2156 | Msa1465040:intron |
| CCTCCTAATAAATGGAATGG+TGG | 0.626581 | tig0044857:-575 | Msa1465040:CDS |
| ATTTGAATCTTGCAGCATTG+GGG | 0.627950 | tig0044857:+2626 | Msa1465040:intergenic |
| TATTTACGCCAATGTGACAG+TGG | 0.658716 | tig0044857:-1206 | Msa1465040:CDS |
| AAACCCAAAGGACAAAACAA+AGG | 0.684135 | tig0044857:-1236 | Msa1465040:CDS |
| CAATTAAACCTGGATATCAG+GGG | 0.687288 | tig0044857:+502 | Msa1465040:intergenic |
| AGCCATACTAGAAAACCCAA+AGG | 0.689734 | tig0044857:-1248 | Msa1465040:CDS |
| TGAAAGACATGGAATCTGTG+AGG | 0.721466 | tig0044857:+864 | Msa1465030:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTCTTTGAAATTTTT+GGG | + | tig0044857:752-771 | Msa1465040:intergenic | 10.0% |
| !!! | TTTAAATTCTTTGAAATTTT+TGG | + | tig0044857:753-772 | Msa1465040:intergenic | 10.0% |
| !!! | TTTGTTTTTAAATTATTACT+AGG | + | tig0044857:3016-3035 | Msa1465040:intergenic | 10.0% |
| !! | ATTTATTTGTATAGATTAGA+TGG | + | tig0044857:2607-2626 | Msa1465040:intergenic | 15.0% |
| !!! | TATTTAATAAAATGGATTAG+CGG | + | tig0044857:2720-2739 | Msa1465040:intergenic | 15.0% |
| !! | TTTGCACTTATTTAATAAAA+TGG | + | tig0044857:2728-2747 | Msa1465040:intergenic | 15.0% |
| !! | GAAAATTGATTATTGTTAAT+TGG | + | tig0044857:2946-2965 | Msa1465040:intergenic | 15.0% |
| !! | AAATGTGTATTTATAAAGCA+GGG | - | tig0044857:3-22 | Msa1465040:three_prime_UTR | 20.0% |
| !!! | CTAAATTTTGTACATAATGT+TGG | - | tig0044857:43-62 | Msa1465040:three_prime_UTR | 20.0% |
| !! | ATAATAATAACTACACCTTT+GGG | + | tig0044857:215-234 | Msa1465040:intergenic | 20.0% |
| !! | AATAATAATAACTACACCTT+TGG | + | tig0044857:216-235 | Msa1465040:intergenic | 20.0% |
| !!! | TAATTCGGTTTTAAAAACAT+TGG | + | tig0044857:359-378 | Msa1465040:intergenic | 20.0% |
| !!! | TAATCTCTAAAAAAATCAAG+CGG | + | tig0044857:523-542 | Msa1465040:intergenic | 20.0% |
| !!! | GTATGAATCAAATATTTTCA+TGG | + | tig0044857:650-669 | Msa1465040:intergenic | 20.0% |
| !! | CAAATCTAAATTTGTCAATA+AGG | - | tig0044857:941-960 | Msa1465040:intron | 20.0% |
| !! | GTGTTTGCTTAAAAATAAAA+GGG | + | tig0044857:1016-1035 | Msa1465040:intergenic | 20.0% |
| !!! | ATTTTTTCAACCAATAATTG+TGG | + | tig0044857:1046-1065 | Msa1465040:intergenic | 20.0% |
| !!! | AAATTTTTGTGGACAAATTT+TGG | - | tig0044857:1367-1386 | Msa1465040:intron | 20.0% |
| !!! | AATTTTTATTTTGCCTAAGA+TGG | + | tig0044857:1585-1604 | Msa1465040:intergenic | 20.0% |
| !! | TGAAAATGTAAGTATAACAA+TGG | - | tig0044857:1683-1702 | Msa1465040:CDS | 20.0% |
| !! | ACTAAGTTATTAGGAATAAA+TGG | - | tig0044857:1947-1966 | Msa1465040:intron | 20.0% |
| !! | ACATGATTTCTTAATTATCT+AGG | + | tig0044857:2263-2282 | Msa1465040:intergenic | 20.0% |
| !! | TTGTTACATCTATATATGTT+TGG | - | tig0044857:2497-2516 | Msa1465040:intron | 20.0% |
| !!! | TTTCTTTTTACATTCGTATT+TGG | + | tig0044857:2669-2688 | Msa1465040:intergenic | 20.0% |
| !! | TTGTATATGTCAATATGAAA+AGG | + | tig0044857:2972-2991 | Msa1465040:intergenic | 20.0% |
| !!! | GTTTTTAAATTATTACTAGG+TGG | + | tig0044857:3013-3032 | Msa1465040:intergenic | 20.0% |
| !! | ATCACTATAATCATTCTATA+TGG | - | tig0044857:3385-3404 | Msa1465040:exon | 20.0% |
| ! | CAAATGTGTATTTATAAAGC+AGG | - | tig0044857:2-21 | Msa1465040:three_prime_UTR | 25.0% |
| ! | TAATAATAACTACACCTTTG+GGG | + | tig0044857:214-233 | Msa1465040:intergenic | 25.0% |
| ! | TGATGATTCAATGTGTAATT+CGG | + | tig0044857:374-393 | Msa1465040:intergenic | 25.0% |
| ! | ATGTCAATTCTATGTTCAAA+CGG | - | tig0044857:482-501 | Msa1465040:intron | 25.0% |
| ! | CTTGAAAAATTAGTCCTATA+AGG | - | tig0044857:620-639 | Msa1465040:intron | 25.0% |
| !!! | TGAAAATTTTGTCGTTTAGA+TGG | + | tig0044857:717-736 | Msa1465040:intergenic | 25.0% |
| !! | ATCTAAACGACAAAATTTTC+AGG | - | tig0044857:716-735 | Msa1465040:intron | 25.0% |
| ! | GGTGTTTGCTTAAAAATAAA+AGG | + | tig0044857:1017-1036 | Msa1465040:intergenic | 25.0% |
| !!! | CTATTTTGAATTAGTTGTGA+AGG | - | tig0044857:1340-1359 | Msa1465040:intron | 25.0% |
| ! | TACAAATGAATCTACCATTT+AGG | - | tig0044857:1805-1824 | Msa1465040:intron | 25.0% |
| ! | AATTTAATGTACTAGAGTGA+AGG | + | tig0044857:1915-1934 | Msa1465040:intergenic | 25.0% |
| ! | GTACATTAAATTCATCTTAC+AGG | - | tig0044857:1923-1942 | Msa1465040:CDS | 25.0% |
| ! | CAATTATAAGTTATTCGGTT+AGG | + | tig0044857:2062-2081 | Msa1465040:intergenic | 25.0% |
| ! | GCGAACAATTATAAGTTATT+CGG | + | tig0044857:2067-2086 | Msa1465040:intergenic | 25.0% |
| ! | TATTACCATAGGAATATAGT+TGG | - | tig0044857:2326-2345 | Msa1465040:intron | 25.0% |
| ! | ATTTAATTCTCTTCTACATG+AGG | + | tig0044857:2402-2421 | Msa1465040:intergenic | 25.0% |
| !! | GTGCAAAACTAATTTTATCT+TGG | - | tig0044857:2741-2760 | Msa1465040:intron | 25.0% |
| !!! | TATCTTGGACAAACATTTTT+TGG | - | tig0044857:2756-2775 | Msa1465040:intron | 25.0% |
| !!! | ATCTTGGACAAACATTTTTT+GGG | - | tig0044857:2757-2776 | Msa1465040:intron | 25.0% |
| ! | TTTAAATTATTACTAGGTGG+TGG | + | tig0044857:3010-3029 | Msa1465040:intergenic | 25.0% |
| ! | AAAGATTAAAAATCGCAACA+AGG | - | tig0044857:3247-3266 | Msa1465040:CDS | 25.0% |
| ! | TGATTATAGTGATTGAAAGA+AGG | + | tig0044857:3378-3397 | Msa1465040:intergenic | 25.0% |
| ! | ATTGCACCATTTAGAATTTC+AGG | + | tig0044857:140-159 | Msa1465040:intergenic | 30.0% |
| AGTAAATATAAGCAACCGTT+AGG | + | tig0044857:181-200 | Msa1465040:intergenic | 30.0% | |
| AACATATGAACCATGATACA+TGG | + | tig0044857:400-419 | Msa1465040:intergenic | 30.0% | |
| ! | CAGTTTTACCTTGATTCAAA+CGG | + | tig0044857:428-447 | Msa1465040:intergenic | 30.0% |
| ! | ATTACATTCGACTTAACTTG+TGG | - | tig0044857:539-558 | Msa1465040:CDS | 30.0% |
| !! | TTACATTCGACTTAACTTGT+GGG | - | tig0044857:540-559 | Msa1465040:CDS | 30.0% |
| ! | ATTTTCATGGTCAACCTTAT+AGG | + | tig0044857:637-656 | Msa1465040:intergenic | 30.0% |
| AATTTGAATCTTGCAGCATT+GGG | + | tig0044857:800-819 | Msa1465040:intergenic | 30.0% | |
| AAATTTGAATCTTGCAGCAT+TGG | + | tig0044857:801-820 | Msa1465040:intergenic | 30.0% | |
| ATACAACTAGAGCAATACAT+GGG | + | tig0044857:898-917 | Msa1465040:intergenic | 30.0% | |
| AGTGTATAGCTTAGAATAGT+TGG | + | tig0044857:978-997 | Msa1465040:intergenic | 30.0% | |
| TTTCAACCAATAATTGTGGT+GGG | + | tig0044857:1042-1061 | Msa1465040:intergenic | 30.0% | |
| ! | TTTTCAACCAATAATTGTGG+TGG | + | tig0044857:1043-1062 | Msa1465040:intergenic | 30.0% |
| GTCATTCAAATAGACCTTAT+GGG | + | tig0044857:1080-1099 | Msa1465040:intergenic | 30.0% | |
| TGTCATTCAAATAGACCTTA+TGG | + | tig0044857:1081-1100 | Msa1465040:intergenic | 30.0% | |
| ATAGCAAAAGATATGTCAAG+TGG | - | tig0044857:1148-1167 | Msa1465040:intron | 30.0% | |
| TTTGTATAAATGTTGAGCAG+AGG | - | tig0044857:1251-1270 | Msa1465040:CDS | 30.0% | |
| ATCATATACTCCAATCACAT+TGG | - | tig0044857:1304-1323 | Msa1465040:intron | 30.0% | |
| ATATCTGAATCCAATGTGAT+TGG | + | tig0044857:1317-1336 | Msa1465040:intergenic | 30.0% | |
| ATCACATTGGATTCAGATAT+TGG | - | tig0044857:1317-1336 | Msa1465040:intron | 30.0% | |
| !! | GTGAAGGTACAAAATTTTTG+TGG | - | tig0044857:1356-1375 | Msa1465040:intron | 30.0% |
| ! | CTTCATTTGTCTAAAATGGT+GGG | + | tig0044857:1519-1538 | Msa1465040:intergenic | 30.0% |
| CTTCCTTCATTTGTCTAAAA+TGG | + | tig0044857:1523-1542 | Msa1465040:intergenic | 30.0% | |
| ! | CATTTTAGACAAATGAAGGA+AGG | - | tig0044857:1521-1540 | Msa1465040:intron | 30.0% |
| ! | GTTTAGAGCTTCAATTTCTT+GGG | + | tig0044857:1628-1647 | Msa1465040:intergenic | 30.0% |
| ! | TGTTTAGAGCTTCAATTTCT+TGG | + | tig0044857:1629-1648 | Msa1465040:intergenic | 30.0% |
| !! | TAAGTATAACAATGGATTGC+TGG | - | tig0044857:1691-1710 | Msa1465040:CDS | 30.0% |
| TCATTTGTACCTGAAACATT+GGG | + | tig0044857:1794-1813 | Msa1465040:intergenic | 30.0% | |
| TTCATTTGTACCTGAAACAT+TGG | + | tig0044857:1795-1814 | Msa1465040:intergenic | 30.0% | |
| CTTACAGGAACTAAGTTATT+AGG | - | tig0044857:1938-1957 | Msa1465040:intron | 30.0% | |
| TTATAAGTTATTCGGTTAGG+AGG | + | tig0044857:2059-2078 | Msa1465040:intergenic | 30.0% | |
| TTATCTAGGTTACCTTTAGT+AGG | + | tig0044857:2249-2268 | Msa1465040:intergenic | 30.0% | |
| TATAGAACTGCTATTACCAT+AGG | - | tig0044857:2315-2334 | Msa1465040:intron | 30.0% | |
| TCTTACCAACTATATTCCTA+TGG | + | tig0044857:2334-2353 | Msa1465040:intergenic | 30.0% | |
| TATTAAGAACGTGAAAGACA+TGG | + | tig0044857:2572-2591 | Msa1465040:intergenic | 30.0% | |
| TGTCTTTCACGTTCTTAATA+AGG | - | tig0044857:2572-2591 | Msa1465040:CDS | 30.0% | |
| ! | CTTTTTACATTCGTATTTGG+AGG | + | tig0044857:2666-2685 | Msa1465040:intergenic | 30.0% |
| TGTTAATTGGCAATTAAACC+TGG | + | tig0044857:2933-2952 | Msa1465040:intergenic | 30.0% | |
| ! | ATTTTGCAGATACTTAGATG+TGG | - | tig0044857:3045-3064 | Msa1465040:intron | 30.0% |
| AAGCTAAGTGTCATGTTGAA+TGG | + | tig0044857:74-93 | Msa1465040:intergenic | 35.0% | |
| GTAAGGACTTGAAAAATGCA+GGG | + | tig0044857:97-116 | Msa1465040:intergenic | 35.0% | |
| TTGGAGCCTGAAATTCTAAA+TGG | - | tig0044857:131-150 | Msa1465040:three_prime_UTR | 35.0% | |
| ! | AGAGCACTTATAAGATGAGA+TGG | - | tig0044857:317-336 | Msa1465040:CDS | 35.0% |
| ATCATCAAGACCATGTATCA+TGG | - | tig0044857:387-406 | Msa1465040:intron | 35.0% | |
| ! | GTTTTACACCGTTTGAATCA+AGG | - | tig0044857:417-436 | Msa1465040:intron | 35.0% |
| AAAAATCAAGCGGAACTAGA+TGG | + | tig0044857:513-532 | Msa1465040:intergenic | 35.0% | |
| !!! | GACAAAATTTTCAGGTAGCT+TGG | - | tig0044857:724-743 | Msa1465040:intron | 35.0% |
| ATTTGAATCTTGCAGCATTG+GGG | + | tig0044857:799-818 | Msa1465040:intergenic | 35.0% | |
| TATCGAATTAGGAGTAGGAA+GGG | + | tig0044857:825-844 | Msa1465040:intergenic | 35.0% | |
| ATATCGAATTAGGAGTAGGA+AGG | + | tig0044857:826-845 | Msa1465040:intergenic | 35.0% | |
| TCCTACTCCTAATTCGATAT+TGG | - | tig0044857:826-845 | Msa1465040:intron | 35.0% | |
| CCTACTCCTAATTCGATATT+GGG | - | tig0044857:827-846 | Msa1465040:intron | 35.0% | |
| !!! | GCAAGTATGTTTTTTCCAAC+AGG | + | tig0044857:857-876 | Msa1465040:intergenic | 35.0% |
| TTGGAAAAAACATACTTGCC+AGG | - | tig0044857:858-877 | Msa1465040:CDS | 35.0% | |
| TACAACTAGAGCAATACATG+GGG | + | tig0044857:897-916 | Msa1465040:intergenic | 35.0% | |
| GATACAACTAGAGCAATACA+TGG | + | tig0044857:899-918 | Msa1465040:intergenic | 35.0% | |
| AATTGCACTCAAATCCCATA+AGG | - | tig0044857:1063-1082 | Msa1465040:intron | 35.0% | |
| ! | ACATCTCTCTACTTCTAGAA+AGG | - | tig0044857:1100-1119 | Msa1465040:intron | 35.0% |
| ! | TCTACTTCTAGAAAGGATCT+TGG | - | tig0044857:1107-1126 | Msa1465040:intron | 35.0% |
| ! | CCTTCATTTGTCTAAAATGG+TGG | + | tig0044857:1520-1539 | Msa1465040:intergenic | 35.0% |
| ! | CCACCATTTTAGACAAATGA+AGG | - | tig0044857:1517-1536 | Msa1465040:intron | 35.0% |
| !! | AGATGGTAGAAAGTACCTTA+GGG | + | tig0044857:1568-1587 | Msa1465040:intergenic | 35.0% |
| !! | AAGATGGTAGAAAGTACCTT+AGG | + | tig0044857:1569-1588 | Msa1465040:intergenic | 35.0% |
| ! | AAGGTACTTTCTACCATCTT+AGG | - | tig0044857:1569-1588 | Msa1465040:intron | 35.0% |
| TTACAAACCTGGTCAAGTTA+GGG | - | tig0044857:1734-1753 | Msa1465040:intron | 35.0% | |
| CATTTGTACCTGAAACATTG+GGG | + | tig0044857:1793-1812 | Msa1465040:intergenic | 35.0% | |
| TACCATTTAGGCACTTGAAA+AGG | - | tig0044857:1817-1836 | Msa1465040:intron | 35.0% | |
| GAGAACTCGAGTTTGATTAT+TGG | - | tig0044857:2003-2022 | Msa1465040:intron | 35.0% | |
| CTGCAACAAAAGATGATAAC+AGG | + | tig0044857:2146-2165 | Msa1465040:intergenic | 35.0% | |
| ! | CTGTTATCATCTTTTGTTGC+AGG | - | tig0044857:2144-2163 | Msa1465040:CDS | 35.0% |
| AAACCCAAAGGACAAAACAA+AGG | - | tig0044857:2186-2205 | Msa1465040:intron | 35.0% | |
| !!! | ACACCTTTGTTTTGTCCTTT+GGG | + | tig0044857:2192-2211 | Msa1465040:intergenic | 35.0% |
| !!! | TACACCTTTGTTTTGTCCTT+TGG | + | tig0044857:2193-2212 | Msa1465040:intergenic | 35.0% |
| !! | AGCAAGAAAGTACTACTCTA+AGG | + | tig0044857:2286-2305 | Msa1465040:intergenic | 35.0% |
| !! | CTATATATGTTTGGTGATGC+AGG | - | tig0044857:2506-2525 | Msa1465040:intron | 35.0% |
| TTTGACAGCCTCCTAATAAA+TGG | - | tig0044857:2839-2858 | Msa1465040:intron | 35.0% | |
| ACACCACCATTCCATTTATT+AGG | + | tig0044857:2853-2872 | Msa1465040:intergenic | 35.0% | |
| ! | AATAAATGGAATGGTGGTGT+TGG | - | tig0044857:2853-2872 | Msa1465040:intron | 35.0% |
| ! | ATAAATGGAATGGTGGTGTT+GGG | - | tig0044857:2854-2873 | Msa1465040:intron | 35.0% |
| CAATTAAACCTGGATATCAG+GGG | + | tig0044857:2923-2942 | Msa1465040:intergenic | 35.0% | |
| GCAATTAAACCTGGATATCA+GGG | + | tig0044857:2924-2943 | Msa1465040:intergenic | 35.0% | |
| !! | GTTGCTATGGCTTTATTCAT+GGG | + | tig0044857:3078-3097 | Msa1465040:intergenic | 35.0% |
| !! | AGTTGCTATGGCTTTATTCA+TGG | + | tig0044857:3079-3098 | Msa1465040:intergenic | 35.0% |
| ACAATCATTGATCTGAGTGA+AGG | - | tig0044857:3270-3289 | Msa1465040:CDS | 35.0% | |
| GGTAAGGACTTGAAAAATGC+AGG | + | tig0044857:98-117 | Msa1465040:intergenic | 40.0% | |
| !! | CAAGTTCTGAGCAAAAGGTA+AGG | + | tig0044857:114-133 | Msa1465040:intergenic | 40.0% |
| ! | CTTACCTTTTGCTCAGAACT+TGG | - | tig0044857:112-131 | Msa1465040:three_prime_UTR | 40.0% |
| TACTATCGCAAAAACCCCAA+AGG | - | tig0044857:197-216 | Msa1465040:three_prime_UTR | 40.0% | |
| CCCAATATCGAATTAGGAGT+AGG | + | tig0044857:830-849 | Msa1465040:intergenic | 40.0% | |
| GGAAGTCCCAATATCGAATT+AGG | + | tig0044857:836-855 | Msa1465040:intergenic | 40.0% | |
| !!! | TGGGGAATCTTTTTCAAACC+TGG | + | tig0044857:879-898 | Msa1465040:intergenic | 40.0% |
| !! | AACCAATAATTGTGGTGGGT+GGG | + | tig0044857:1038-1057 | Msa1465040:intergenic | 40.0% |
| ! | ACTTCTAGAAAGGATCTTGG+AGG | - | tig0044857:1110-1129 | Msa1465040:intron | 40.0% |
| TGCAAACAGATGTACCCAAA+TGG | - | tig0044857:1485-1504 | Msa1465040:intron | 40.0% | |
| ! | GGTGGGACATTTTTCCATTT+GGG | + | tig0044857:1502-1521 | Msa1465040:intergenic | 40.0% |
| ! | TGGTGGGACATTTTTCCATT+TGG | + | tig0044857:1503-1522 | Msa1465040:intergenic | 40.0% |
| AATGAAGGAAGGTGACAACT+TGG | - | tig0044857:1532-1551 | Msa1465040:intron | 40.0% | |
| GTTACAAACCTGGTCAAGTT+AGG | - | tig0044857:1733-1752 | Msa1465040:intron | 40.0% | |
| !!! | CACCTTTTCAAGTGCCTAAA+TGG | + | tig0044857:1822-1841 | Msa1465040:intergenic | 40.0% |
| AGCCATACTAGAAAACCCAA+AGG | - | tig0044857:2174-2193 | Msa1465040:intron | 40.0% | |
| !! | GTCCTTTGGGTTTTCTAGTA+TGG | + | tig0044857:2179-2198 | Msa1465040:intergenic | 40.0% |
| CTGTCACATTGGCGTAAATA+AGG | + | tig0044857:2216-2235 | Msa1465040:intergenic | 40.0% | |
| TATTTACGCCAATGTGACAG+TGG | - | tig0044857:2216-2235 | Msa1465040:intron | 40.0% | |
| AGTGGACGATATCCTACTAA+AGG | - | tig0044857:2234-2253 | Msa1465040:intron | 40.0% | |
| GTAGTACTTTCTTGCTTGTG+AGG | - | tig0044857:2290-2309 | Msa1465040:intron | 40.0% | |
| TGAAAGACATGGAATCTGTG+AGG | + | tig0044857:2561-2580 | Msa1465040:intergenic | 40.0% | |
| CAGCCTCCTAATAAATGGAA+TGG | - | tig0044857:2844-2863 | Msa1465040:intron | 40.0% | |
| CCACCATTCCATTTATTAGG+AGG | + | tig0044857:2850-2869 | Msa1465040:intergenic | 40.0% | |
| CCTCCTAATAAATGGAATGG+TGG | - | tig0044857:2847-2866 | Msa1465040:intron | 40.0% | |
| ! | TGGTGTTGGGTACATATCAA+AGG | - | tig0044857:2867-2886 | Msa1465040:intron | 40.0% |
| GGCAATTAAACCTGGATATC+AGG | + | tig0044857:2925-2944 | Msa1465040:intergenic | 40.0% | |
| !! | TAGGTGGTGGTGATTTTTCT+TGG | + | tig0044857:2997-3016 | Msa1465040:intergenic | 40.0% |
| ATACGAATTTGCCCCTTTGT+TGG | + | tig0044857:3332-3351 | Msa1465040:intergenic | 40.0% | |
| GCAATTGCTCTTGTAGCTGT+TGG | - | tig0044857:155-174 | Msa1465040:three_prime_UTR | 45.0% | |
| ! | TCTTGTAGCTGTTGGCCTAA+CGG | - | tig0044857:163-182 | Msa1465040:three_prime_UTR | 45.0% |
| TCGATATTGGGACTTCCTGT+TGG | - | tig0044857:839-858 | Msa1465040:intron | 45.0% | |
| ! | CAACCAATAATTGTGGTGGG+TGG | + | tig0044857:1039-1058 | Msa1465040:intergenic | 45.0% |
| AGCAGAGGAAGAGATAGTCA+AGG | - | tig0044857:1266-1285 | Msa1465040:intron | 45.0% | |
| !! | AATGGATTGCTGGAGCTTGT+AGG | - | tig0044857:1701-1720 | Msa1465040:CDS | 45.0% |
| ! | ATGGATTGCTGGAGCTTGTA+GGG | - | tig0044857:1702-1721 | Msa1465040:CDS | 45.0% |
| GGACGTTTCAGTTACAAACC+TGG | - | tig0044857:1723-1742 | Msa1465040:intron | 45.0% | |
| ! | AGGGCATTTGGAATGATTGC+TGG | - | tig0044857:1753-1772 | Msa1465040:intron | 45.0% |
| ! | GCATTTGGAATGATTGCTGG+AGG | - | tig0044857:1756-1775 | Msa1465040:intron | 45.0% |
| AGGCATTACCCCAATGTTTC+AGG | - | tig0044857:1782-1801 | Msa1465040:intron | 45.0% | |
| GATATCGTCCACTGTCACAT+TGG | + | tig0044857:2227-2246 | Msa1465040:intergenic | 45.0% | |
| !! | ATGGCTTTATTCATGGGTGG+TGG | + | tig0044857:3072-3091 | Msa1465040:intergenic | 45.0% |
| !! | GCTATGGCTTTATTCATGGG+TGG | + | tig0044857:3075-3094 | Msa1465040:intergenic | 45.0% |
| TGCTGCAAGATGAGTTGCTA+TGG | + | tig0044857:3091-3110 | Msa1465040:intergenic | 45.0% | |
| TCGCTTCCATTTGCCAACAA+AGG | - | tig0044857:3316-3335 | Msa1465040:CDS | 45.0% | |
| CGCTTCCATTTGCCAACAAA+GGG | - | tig0044857:3317-3336 | Msa1465040:CDS | 45.0% | |
| GCTTCCATTTGCCAACAAAG+GGG | - | tig0044857:3318-3337 | Msa1465040:CDS | 45.0% | |
| TTTGCCCCTTTGTTGGCAAA+TGG | + | tig0044857:3325-3344 | Msa1465040:intergenic | 45.0% | |
| !!! | TTTTTTTCAAATATTTATTA+AGG | + | tig0044857:1203-1222 | Msa1465040:intergenic | 5.0% |
| !! | AATAAATATTTGAAAAAAAA+AGG | - | tig0044857:1204-1223 | Msa1465040:CDS | 5.0% |
| !! | TAATAATTTAAAAACAAAAA+TGG | - | tig0044857:3018-3037 | Msa1465040:intron | 5.0% |
| !! | GGCTCCAAGTTCTGAGCAAA+AGG | + | tig0044857:119-138 | Msa1465040:intergenic | 50.0% |
| CACCCACCCACCACAATTAT+TGG | - | tig0044857:1033-1052 | Msa1465040:intron | 50.0% | |
| AAGTACCTTAGGGCCCTTCA+CGG | + | tig0044857:1558-1577 | Msa1465040:intergenic | 50.0% | |
| CCAAATGCCCTAACTTGACC+AGG | + | tig0044857:1744-1763 | Msa1465040:intergenic | 50.0% | |
| ! | CCTGGTCAAGTTAGGGCATT+TGG | - | tig0044857:1741-1760 | Msa1465040:intron | 50.0% |
| GGAATGATTGCTGGAGGTTC+AGG | - | tig0044857:1762-1781 | Msa1465040:intron | 50.0% | |
| TAAACCTGGATATCAGGGGC+AGG | + | tig0044857:2919-2938 | Msa1465040:intergenic | 50.0% | |
| GCAACTCATCTTGCAGCACT+TGG | - | tig0044857:3093-3112 | Msa1465040:intron | 50.0% | |
| ! | TGCAGCATTGGGGCTGATCA+TGG | + | tig0044857:789-808 | Msa1465040:intergenic | 55.0% |
| AGGTGACAACTTGGCCGTGA+AGG | - | tig0044857:1541-1560 | Msa1465040:intron | 55.0% | |
| GGTGACAACTTGGCCGTGAA+GGG | - | tig0044857:1542-1561 | Msa1465040:intron | 55.0% | |
| TGGATATCAGGGGCAGGTGC+TGG | + | tig0044857:2913-2932 | Msa1465040:intergenic | 60.0% | |
| AGCACCTGCCCCTGATATCC+AGG | - | tig0044857:2912-2931 | Msa1465040:intron | 60.0% | |
| CTTGGCCGTGAAGGGCCCTA+AGG | - | tig0044857:1550-1569 | Msa1465040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044857 | gene | 1 | 3443 | 1 | ID=Msa1465040;Name=Msa1465040 |
| tig0044857 | mRNA | 1 | 3443 | 1 | ID=Msa1465040-mRNA-1;Parent=Msa1465040;Name=Msa1465040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=58|1|1|1|1|1|9|297|295 |
| tig0044857 | exon | 1 | 390 | 1 | ID=Msa1465040-mRNA-1:exon:24667;Parent=Msa1465040-mRNA-1 |
| tig0044857 | exon | 511 | 597 | 511 | ID=Msa1465040-mRNA-1:exon:24666;Parent=Msa1465040-mRNA-1 |
| tig0044857 | exon | 851 | 916 | 851 | ID=Msa1465040-mRNA-1:exon:24665;Parent=Msa1465040-mRNA-1 |
| tig0044857 | exon | 1189 | 1278 | 1189 | ID=Msa1465040-mRNA-1:exon:24664;Parent=Msa1465040-mRNA-1 |
| tig0044857 | exon | 1641 | 1721 | 1641 | ID=Msa1465040-mRNA-1:exon:24663;Parent=Msa1465040-mRNA-1 |
| tig0044857 | exon | 1873 | 1950 | 1873 | ID=Msa1465040-mRNA-1:exon:24662;Parent=Msa1465040-mRNA-1 |
| tig0044857 | exon | 2083 | 2173 | 2083 | ID=Msa1465040-mRNA-1:exon:24661;Parent=Msa1465040-mRNA-1 |
| tig0044857 | exon | 2565 | 2706 | 2565 | ID=Msa1465040-mRNA-1:exon:24660;Parent=Msa1465040-mRNA-1 |
| tig0044857 | exon | 3226 | 3443 | 3226 | ID=Msa1465040-mRNA-1:exon:24659;Parent=Msa1465040-mRNA-1 |
| tig0044857 | five_prime_UTR | 3386 | 3443 | 3386 | ID=Msa1465040-mRNA-1:five_prime_utr;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 3226 | 3385 | 3226 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 2565 | 2706 | 2565 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 2083 | 2173 | 2083 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 1873 | 1950 | 1873 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 1641 | 1721 | 1641 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 1189 | 1278 | 1189 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 851 | 916 | 851 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 511 | 597 | 511 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | CDS | 298 | 390 | 298 | ID=Msa1465040-mRNA-1:cds;Parent=Msa1465040-mRNA-1 |
| tig0044857 | three_prime_UTR | 1 | 297 | 1 | ID=Msa1465040-mRNA-1:three_prime_utr;Parent=Msa1465040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
