Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22278.t1 | XP_003610947.1 | 99.1 | 757 | 7 | 0 | 1 | 757 | 1 | 757 | 0.00E+00 | 1604 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22278.t1 | Q9SXV6 | 88.1 | 756 | 90 | 0 | 1 | 756 | 1 | 756 | 0.0e+00 | 1461.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22278.t1 | G7K980 | 99.1 | 757 | 7 | 0 | 1 | 757 | 1 | 757 | 0.0e+00 | 1604.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene22278 | 0.811411 | 7.09E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene22278 | 0.805775 | 1.13E-49 | -1.69E-46 |
| MS.gene052242 | MS.gene22278 | -0.825828 | 3.79E-54 | -1.69E-46 |
| MS.gene052776 | MS.gene22278 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene22278 | 0.801737 | 7.82E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene22278 | 0.811979 | 5.34E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene22278 | 0.819677 | 1.02E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene22278 | 0.831152 | 1.96E-55 | -1.69E-46 |
| MS.gene059007 | MS.gene22278 | 0.814391 | 1.58E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene22278 | 0.806113 | 9.63E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene22278 | 0.814282 | 1.67E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22278 | MS.gene000594 | PPI |
| MS.gene011204 | MS.gene22278 | PPI |
| MS.gene22278 | MS.gene98126 | PPI |
| MS.gene22278 | MS.gene034308 | PPI |
| MS.gene22278 | MS.gene50096 | PPI |
| MS.gene22278 | MS.gene37340 | PPI |
| MS.gene22278 | MS.gene034307 | PPI |
| MS.gene22278 | MS.gene07774 | PPI |
| MS.gene22278 | MS.gene87166 | PPI |
| MS.gene98129 | MS.gene22278 | PPI |
| MS.gene22278 | MS.gene053114 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22278.t1 | MTR_5g008810 | 99.075 | 757 | 7 | 0 | 1 | 757 | 1 | 757 | 0.0 | 1569 |
| MS.gene22278.t1 | MTR_7g062020 | 64.621 | 766 | 259 | 4 | 1 | 754 | 1 | 766 | 0.0 | 1056 |
| MS.gene22278.t1 | MTR_6g088140 | 64.559 | 759 | 245 | 4 | 1 | 754 | 1 | 740 | 0.0 | 1047 |
| MS.gene22278.t1 | MTR_6g093100 | 63.824 | 774 | 260 | 6 | 1 | 754 | 1 | 774 | 0.0 | 1044 |
| MS.gene22278.t1 | MTR_6g093180 | 60.000 | 755 | 299 | 3 | 1 | 754 | 1 | 753 | 0.0 | 979 |
| MS.gene22278.t1 | MTR_4g005270 | 58.598 | 756 | 309 | 4 | 1 | 753 | 1 | 755 | 0.0 | 956 |
| MS.gene22278.t1 | MTR_4g005190 | 58.201 | 756 | 312 | 4 | 1 | 753 | 1 | 755 | 0.0 | 955 |
| MS.gene22278.t1 | MTR_8g016975 | 57.332 | 757 | 319 | 4 | 1 | 754 | 1 | 756 | 0.0 | 948 |
| MS.gene22278.t1 | MTR_0013s0230 | 58.388 | 757 | 310 | 5 | 1 | 753 | 1 | 756 | 0.0 | 942 |
| MS.gene22278.t1 | MTR_6g034985 | 56.954 | 755 | 322 | 3 | 1 | 754 | 1 | 753 | 0.0 | 924 |
| MS.gene22278.t1 | MTR_6g035010 | 56.101 | 754 | 328 | 3 | 1 | 753 | 1 | 752 | 0.0 | 910 |
| MS.gene22278.t1 | MTR_6g088140 | 63.040 | 671 | 225 | 3 | 1 | 667 | 1 | 652 | 0.0 | 909 |
| MS.gene22278.t1 | MTR_8g016960 | 54.749 | 758 | 332 | 6 | 1 | 754 | 1 | 751 | 0.0 | 894 |
| MS.gene22278.t1 | MTR_8g017020 | 56.719 | 707 | 301 | 4 | 50 | 754 | 19 | 722 | 0.0 | 876 |
| MS.gene22278.t1 | MTR_7g034535 | 58.866 | 688 | 279 | 4 | 69 | 753 | 5 | 691 | 0.0 | 867 |
| MS.gene22278.t1 | MTR_4g005190 | 57.228 | 671 | 283 | 4 | 1 | 668 | 1 | 670 | 0.0 | 836 |
| MS.gene22278.t1 | MTR_3g436160 | 58.098 | 673 | 275 | 5 | 83 | 753 | 27 | 694 | 0.0 | 820 |
| MS.gene22278.t1 | MTR_8g016940 | 51.128 | 266 | 128 | 1 | 489 | 754 | 2 | 265 | 2.02e-90 | 285 |
| MS.gene22278.t1 | MTR_8g016570 | 58.065 | 62 | 26 | 0 | 693 | 754 | 28 | 89 | 2.68e-18 | 82.4 |
| MS.gene22278.t1 | MTR_8g017040 | 51.429 | 70 | 33 | 1 | 1 | 69 | 1 | 70 | 3.81e-17 | 78.6 |
| MS.gene22278.t1 | MTR_3g436170 | 52.239 | 67 | 31 | 1 | 1 | 66 | 1 | 67 | 9.07e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22278.t1 | AT2G07050 | 80.371 | 754 | 148 | 0 | 1 | 754 | 1 | 754 | 0.0 | 1321 |
| MS.gene22278.t1 | AT2G07050 | 82.628 | 662 | 115 | 0 | 93 | 754 | 2 | 663 | 0.0 | 1185 |
| MS.gene22278.t1 | AT3G45130 | 65.786 | 757 | 253 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1018 |
| MS.gene22278.t1 | AT3G45130 | 65.786 | 757 | 253 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1018 |
| MS.gene22278.t1 | AT3G45130 | 65.786 | 757 | 253 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1018 |
| MS.gene22278.t1 | AT3G45130 | 65.786 | 757 | 253 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1018 |
| MS.gene22278.t1 | AT3G45130 | 65.786 | 757 | 253 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1018 |
| MS.gene22278.t1 | AT1G78955 | 58.520 | 757 | 309 | 4 | 1 | 753 | 1 | 756 | 0.0 | 942 |
| MS.gene22278.t1 | AT1G78960 | 57.368 | 760 | 319 | 4 | 1 | 756 | 1 | 759 | 0.0 | 940 |
| MS.gene22278.t1 | AT1G78960 | 57.368 | 760 | 319 | 4 | 1 | 756 | 1 | 759 | 0.0 | 940 |
| MS.gene22278.t1 | AT1G78960 | 57.368 | 760 | 319 | 4 | 1 | 756 | 1 | 759 | 0.0 | 940 |
| MS.gene22278.t1 | AT1G78950 | 57.860 | 757 | 314 | 4 | 1 | 753 | 10 | 765 | 0.0 | 925 |
| MS.gene22278.t1 | AT1G78950 | 57.860 | 757 | 314 | 4 | 1 | 753 | 1 | 756 | 0.0 | 924 |
| MS.gene22278.t1 | AT1G78960 | 57.182 | 724 | 305 | 4 | 1 | 720 | 1 | 723 | 0.0 | 889 |
| MS.gene22278.t1 | AT1G78955 | 59.624 | 691 | 276 | 3 | 65 | 753 | 2 | 691 | 0.0 | 878 |
| MS.gene22278.t1 | AT1G66960 | 53.642 | 755 | 345 | 4 | 1 | 751 | 1 | 754 | 0.0 | 872 |
| MS.gene22278.t1 | AT1G66960 | 53.642 | 755 | 345 | 4 | 1 | 751 | 1 | 754 | 0.0 | 872 |
| MS.gene22278.t1 | AT1G66960 | 53.642 | 755 | 345 | 4 | 1 | 751 | 10 | 763 | 0.0 | 872 |
| MS.gene22278.t1 | AT1G66960 | 53.642 | 755 | 345 | 4 | 1 | 751 | 1 | 754 | 0.0 | 872 |
| MS.gene22278.t1 | AT1G78970 | 54.690 | 757 | 337 | 4 | 1 | 754 | 1 | 754 | 0.0 | 870 |
| MS.gene22278.t1 | AT1G78970 | 54.690 | 757 | 337 | 4 | 1 | 754 | 1 | 754 | 0.0 | 870 |
| MS.gene22278.t1 | AT1G78970 | 54.690 | 757 | 337 | 4 | 1 | 754 | 1 | 754 | 0.0 | 870 |
| MS.gene22278.t1 | AT1G78955 | 58.699 | 661 | 270 | 3 | 65 | 723 | 2 | 661 | 0.0 | 825 |
| MS.gene22278.t1 | AT5G36150 | 49.538 | 757 | 377 | 4 | 1 | 753 | 1 | 756 | 0.0 | 815 |
| MS.gene22278.t1 | AT5G36150 | 49.538 | 757 | 377 | 4 | 1 | 753 | 1 | 756 | 0.0 | 815 |
| MS.gene22278.t1 | AT1G78500 | 50.460 | 761 | 366 | 7 | 1 | 751 | 1 | 760 | 0.0 | 811 |
| MS.gene22278.t1 | AT1G78500 | 50.460 | 761 | 366 | 7 | 1 | 751 | 1 | 760 | 0.0 | 811 |
| MS.gene22278.t1 | AT4G15370 | 49.275 | 759 | 369 | 6 | 1 | 751 | 1 | 751 | 0.0 | 795 |
| MS.gene22278.t1 | AT4G15370 | 49.081 | 762 | 369 | 7 | 1 | 751 | 1 | 754 | 0.0 | 790 |
| MS.gene22278.t1 | AT1G78960 | 59.606 | 609 | 243 | 3 | 150 | 756 | 1 | 608 | 0.0 | 790 |
| MS.gene22278.t1 | AT4G15340 | 49.340 | 758 | 374 | 6 | 1 | 749 | 1 | 757 | 0.0 | 787 |
| MS.gene22278.t1 | AT5G48010 | 47.889 | 758 | 385 | 5 | 1 | 749 | 1 | 757 | 0.0 | 783 |
| MS.gene22278.t1 | AT5G48010 | 47.493 | 758 | 380 | 6 | 1 | 749 | 1 | 749 | 0.0 | 769 |
| MS.gene22278.t1 | AT1G78955 | 58.775 | 604 | 246 | 3 | 65 | 666 | 2 | 604 | 0.0 | 755 |
| MS.gene22278.t1 | AT1G78955 | 60.997 | 582 | 224 | 3 | 174 | 753 | 1 | 581 | 0.0 | 748 |
| MS.gene22278.t1 | AT5G42600 | 47.347 | 754 | 390 | 6 | 1 | 749 | 1 | 752 | 0.0 | 733 |
| MS.gene22278.t1 | AT3G29255 | 44.901 | 755 | 351 | 8 | 2 | 751 | 6 | 700 | 0.0 | 669 |
| MS.gene22278.t1 | AT4G15340 | 47.887 | 568 | 286 | 6 | 1 | 559 | 1 | 567 | 0.0 | 563 |
| MS.gene22278.t1 | AT1G78480 | 37.143 | 140 | 82 | 3 | 58 | 194 | 36 | 172 | 1.85e-19 | 87.8 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTTGGTTTGGGGTAAA+AGG | 0.154236 | 5.3:-2968120 | MS.gene22278:CDS |
| TGTTCAGGTGTATTCAAATT+TGG | 0.159318 | 5.3:-2966716 | MS.gene22278:intron |
| TCACTTATGGCACTTGGTTT+GGG | 0.188803 | 5.3:-2968128 | MS.gene22278:CDS |
| ACTAACCTAATTGAAGAATT+TGG | 0.231134 | 5.3:-2970537 | MS.gene22278:CDS |
| CACTCGTGCAAGATATTCTT+TGG | 0.236923 | 5.3:-2971202 | MS.gene22278:CDS |
| TTCACTTATGGCACTTGGTT+TGG | 0.237239 | 5.3:-2968129 | MS.gene22278:CDS |
| TCAAGAATTACCTTATTTAC+AGG | 0.242278 | 5.3:+2971047 | None:intergenic |
| TGGGGAGTTTGCTTCACTTA+TGG | 0.245949 | 5.3:-2968141 | MS.gene22278:CDS |
| TTCAGGCTTTGTCAACATTT+AGG | 0.256339 | 5.3:-2968446 | MS.gene22278:CDS |
| TTGGACCAAATTCTTCAATT+AGG | 0.261321 | 5.3:+2970532 | None:intergenic |
| TCTACCATTTCAGGAAATAA+TGG | 0.264459 | 5.3:-2962293 | MS.gene22278:intron |
| CAAGGATCCATGATTATCTA+TGG | 0.267663 | 5.3:-2970834 | MS.gene22278:CDS |
| AAATGTCATTATCTCATTAC+AGG | 0.283951 | 5.3:-2970123 | MS.gene22278:intron |
| CAAGGCCAATTCATGAAAAT+AGG | 0.293099 | 5.3:+2971155 | None:intergenic |
| GATAATATTGTTGGTGTGAT+TGG | 0.294184 | 5.3:+2971907 | None:intergenic |
| TATTTCTTCCCGACGATGCC+TGG | 0.295572 | 5.3:+2968413 | None:intergenic |
| GCCAATCCTGCTGAAACTTT+TGG | 0.309739 | 5.3:-2968622 | MS.gene22278:CDS |
| TTCCTTCATCGGATTCTCTT+TGG | 0.323424 | 5.3:+2973153 | None:intergenic |
| GCAGCTCCCATCTGGTGGTT+GGG | 0.324085 | 5.3:-2968025 | MS.gene22278:CDS |
| TGCTAACCAGGTATGGTTCT+TGG | 0.326714 | 5.3:-2968161 | MS.gene22278:intron |
| TTGCATAGGTCCTGTAAATA+AGG | 0.328833 | 5.3:-2971057 | MS.gene22278:intron |
| AAACGATGGAGAAGGGGATA+TGG | 0.329008 | 5.3:-2972397 | MS.gene22278:CDS |
| TTCTTACCTGATGATTATAA+AGG | 0.337163 | 5.3:+2972582 | None:intergenic |
| GTGTACCTCAGCAGCAATTC+AGG | 0.340622 | 5.3:-2968463 | MS.gene22278:CDS |
| AGGAGGCAGGGGATTATTTC+CGG | 0.351958 | 5.3:+2972190 | None:intergenic |
| AATAATTACTTTCAGTCCTT+CGG | 0.352555 | 5.3:+2970286 | None:intergenic |
| TTGACGAACGGATTCGATAT+CGG | 0.352813 | 5.3:+2973240 | None:intergenic |
| GGCTCTCATTGAGGCTGAAC+AGG | 0.356102 | 5.3:-2966650 | MS.gene22278:intron |
| TACAAGCTTCAGATGGTTCA+TGG | 0.356145 | 5.3:-2968350 | MS.gene22278:intron |
| GTCCTGGTGATCTTAGTAAA+TGG | 0.357085 | 5.3:-2970382 | MS.gene22278:CDS |
| AACCTTTGCACATAAATTGC+GGG | 0.357292 | 5.3:+2971831 | None:intergenic |
| GAACAAGAACCTGGATGAAA+TGG | 0.363407 | 5.3:+2972140 | None:intergenic |
| GCTAACCAGGTATGGTTCTT+GGG | 0.364562 | 5.3:-2968160 | MS.gene22278:intron |
| AACTTGAAAGCCTCTGAATA+TGG | 0.367733 | 5.3:+2970865 | None:intergenic |
| TCCATGATCTTTAGTTGAAA+AGG | 0.374641 | 5.3:+2970331 | None:intergenic |
| TTTCTCAAAGATAATATTGT+TGG | 0.376453 | 5.3:+2971898 | None:intergenic |
| CTACCATTTCAGGAAATAAT+GGG | 0.377145 | 5.3:-2962292 | MS.gene22278:intron |
| GGTCCTATGTTTCTTATGCC+TGG | 0.385468 | 5.3:-2972998 | MS.gene22278:CDS |
| TCACGTCGGCAGACAACTTT+GGG | 0.389059 | 5.3:-2973299 | MS.gene22278:CDS |
| AAACACTGGGTGGGCTATGC+TGG | 0.390877 | 5.3:-2966671 | MS.gene22278:CDS |
| ACATCTTTCACTCTCACTTT+CGG | 0.391173 | 5.3:+2973124 | None:intergenic |
| TCTTGTGGCGATCCGGAGTT+AGG | 0.392406 | 5.3:+2973268 | None:intergenic |
| ATATCCCCTTCTCCATCGTT+TGG | 0.404510 | 5.3:+2972399 | None:intergenic |
| GAAGGTCCAAGCACCATGTT+TGG | 0.406473 | 5.3:-2972465 | MS.gene22278:CDS |
| CTGTCTAAGCAGCTCCCATC+TGG | 0.406747 | 5.3:-2968033 | MS.gene22278:CDS |
| CAGAATAAGGATGGTGGGTG+GGG | 0.410991 | 5.3:-2972498 | MS.gene22278:CDS |
| ATTCAAATTTGGAAAGCAAC+AGG | 0.422710 | 5.3:-2966705 | MS.gene22278:CDS |
| GAAGATCATCGCTGTGTTTG+TGG | 0.425232 | 5.3:+2973194 | None:intergenic |
| TCGTTACCTTTATAATCATC+AGG | 0.425456 | 5.3:-2972588 | MS.gene22278:intron |
| GTATGAGCCTTTCTTAGAGT+TGG | 0.426533 | 5.3:+2970513 | None:intergenic |
| TATGTTACTCTAAGATTGCT+TGG | 0.426624 | 5.3:-2972429 | MS.gene22278:CDS |
| ACAGAAACATATTCCCCATA+TGG | 0.426625 | 5.3:-2962231 | MS.gene22278:CDS |
| TATGTTTCTTATGCCTGGCT+TGG | 0.426756 | 5.3:-2972993 | MS.gene22278:intron |
| CAGTGGTGTTGGATCTCTCT+TGG | 0.433214 | 5.3:+2962448 | None:intergenic |
| TTCGGTATCACTTCCTTCAT+CGG | 0.438591 | 5.3:+2973142 | None:intergenic |
| GCACTTGGTTTGGGGTAAAA+GGG | 0.440113 | 5.3:-2968119 | MS.gene22278:CDS |
| GTAAAAGGGCTGATTGCTGC+TGG | 0.442118 | 5.3:-2968105 | MS.gene22278:CDS |
| TGCTAAATATGCTTTGCTGC+TGG | 0.443767 | 5.3:-2970897 | MS.gene22278:CDS |
| TCGGCTGTGCAGTCAGATAT+TGG | 0.447702 | 5.3:+2970305 | None:intergenic |
| ATCCCCTGCCTCCTGAGTTA+TGG | 0.448287 | 5.3:-2972181 | MS.gene22278:CDS |
| AGCAGCTCCCATCTGGTGGT+TGG | 0.448991 | 5.3:-2968026 | MS.gene22278:CDS |
| GTGCTACTCATATAACATCC+TGG | 0.451599 | 5.3:-2972341 | MS.gene22278:CDS |
| GTATTCTCCCAACGCCCATA+TGG | 0.453168 | 5.3:+2962216 | None:intergenic |
| TTGTACGGAAAGAGGTTTGT+TGG | 0.453298 | 5.3:-2971931 | MS.gene22278:CDS |
| CAATCACTGCAGAATGAAGA+TGG | 0.453523 | 5.3:-2969319 | MS.gene22278:intron |
| ATCACGTCGGCAGACAACTT+TGG | 0.455540 | 5.3:-2973300 | MS.gene22278:CDS |
| CCATGATGTAGACTGGAATC+AGG | 0.455918 | 5.3:-2971854 | MS.gene22278:CDS |
| TGTCGTTGTTGGTAGGTACT+TGG | 0.456413 | 5.3:-2972227 | MS.gene22278:intron |
| CTTGGAGTGTTTGAATGGTC+CGG | 0.458818 | 5.3:-2972209 | MS.gene22278:CDS |
| TATTCTCCCAACGCCCATAT+GGG | 0.459458 | 5.3:+2962217 | None:intergenic |
| AACTATATCCCAGGCATCGT+CGG | 0.461132 | 5.3:-2968422 | MS.gene22278:CDS |
| GGGTGGGGTTTGCATATTGA+AGG | 0.463918 | 5.3:-2972483 | MS.gene22278:CDS |
| CTATCTAAAGTGAAATCAAC+AGG | 0.464113 | 5.3:+2962174 | None:intergenic |
| CATAGATAATCATGGATCCT+TGG | 0.470111 | 5.3:+2970835 | None:intergenic |
| GGATGAAATGGAAGAATGTA+TGG | 0.473706 | 5.3:+2972152 | None:intergenic |
| ATATGGAGAAGGCACGTGAC+TGG | 0.476887 | 5.3:-2972380 | MS.gene22278:CDS |
| TTCTTTGCTATATAGTTATG+TGG | 0.477165 | 5.3:-2968487 | MS.gene22278:intron |
| GCCAAAAGTTTCAGCAGGAT+TGG | 0.477251 | 5.3:+2968621 | None:intergenic |
| CACTTATGGCACTTGGTTTG+GGG | 0.478518 | 5.3:-2968127 | MS.gene22278:CDS |
| GCTAAATATGCTTTGCTGCT+GGG | 0.479109 | 5.3:-2970896 | MS.gene22278:CDS |
| CCCACCCAGTGTTTACTACA+TGG | 0.481032 | 5.3:+2966680 | None:intergenic |
| AAGATCATCGCTGTGTTTGT+GGG | 0.482356 | 5.3:+2973195 | None:intergenic |
| TTTGCTTCACTTATGGCACT+TGG | 0.482779 | 5.3:-2968134 | MS.gene22278:CDS |
| CCATGATCTTTAGTTGAAAA+GGG | 0.483692 | 5.3:+2970332 | None:intergenic |
| CAGCTCCCATCTGGTGGTTG+GGG | 0.485523 | 5.3:-2968024 | MS.gene22278:CDS |
| ACTCGTGCAAGATATTCTTT+GGG | 0.489176 | 5.3:-2971201 | MS.gene22278:CDS |
| ATATTCCCCATATGGGCGTT+GGG | 0.489177 | 5.3:-2962223 | MS.gene22278:CDS |
| GTAATTACTCTGTCTATCAC+TGG | 0.492845 | 5.3:-2972656 | MS.gene22278:CDS |
| ATGCTTGATAAATTCTCAAA+TGG | 0.493806 | 5.3:-2962411 | MS.gene22278:CDS |
| AAAATTGCACCTGAGATTGT+TGG | 0.494234 | 5.3:-2970182 | MS.gene22278:CDS |
| ACTATATCCCAGGCATCGTC+GGG | 0.496045 | 5.3:-2968421 | MS.gene22278:CDS |
| TTGCCAATGTGCTACTTGTA+CGG | 0.496391 | 5.3:-2971946 | MS.gene22278:CDS |
| TGCTACTCATATAACATCCT+GGG | 0.497785 | 5.3:-2972340 | MS.gene22278:CDS |
| GGCGAGATCTTGTGGCGATC+CGG | 0.498854 | 5.3:+2973261 | None:intergenic |
| TGTGCTACTTGTACGGAAAG+AGG | 0.500165 | 5.3:-2971939 | MS.gene22278:CDS |
| TATAATCTCTTTGCATCCAA+TGG | 0.500385 | 5.3:+2970155 | None:intergenic |
| TACATTCTTCCATTTCATCC+AGG | 0.500398 | 5.3:-2972149 | MS.gene22278:intron |
| GGAGCCATAACTCAGGAGGC+AGG | 0.500631 | 5.3:+2972177 | None:intergenic |
| CAGCAATCCATAGATAATCA+TGG | 0.500824 | 5.3:+2970827 | None:intergenic |
| CTTTCAAGTTGCATCTTCCA+AGG | 0.503157 | 5.3:-2970852 | MS.gene22278:CDS |
| AATGGTTCACCAACAATCTC+AGG | 0.503298 | 5.3:+2970173 | None:intergenic |
| ACAGAATAAGGATGGTGGGT+GGG | 0.505290 | 5.3:-2972499 | MS.gene22278:intron |
| CATATTCCCCATATGGGCGT+TGG | 0.506392 | 5.3:-2962224 | MS.gene22278:CDS |
| TGGTACCGTCACATTTCAAA+AGG | 0.507661 | 5.3:-2970362 | MS.gene22278:CDS |
| AGGTACTTGGAGTGTTTGAA+TGG | 0.508132 | 5.3:-2972214 | MS.gene22278:CDS |
| GCTGCGCGGTGCAGTGGTGT+TGG | 0.509005 | 5.3:+2962437 | None:intergenic |
| ATAAATTCTCAAATGGAGAA+TGG | 0.509659 | 5.3:-2962404 | MS.gene22278:CDS |
| GTCACATTTCAAAAGGTGCT+TGG | 0.511679 | 5.3:-2970355 | MS.gene22278:CDS |
| CACTCGATCTTATAGCTGGT+TGG | 0.515521 | 5.3:-2969275 | MS.gene22278:CDS |
| CTTAACAGACGAGCATAGAA+AGG | 0.518691 | 5.3:-2972618 | MS.gene22278:CDS |
| TACCATACCATGATGTAGAC+TGG | 0.519792 | 5.3:-2971861 | MS.gene22278:CDS |
| TACATTCATTAAGAATTCAC+AGG | 0.520406 | 5.3:-2970493 | MS.gene22278:intron |
| AGCTCACTCGATCTTATAGC+TGG | 0.520911 | 5.3:-2969279 | MS.gene22278:CDS |
| ATTTCTTCCCGACGATGCCT+GGG | 0.521004 | 5.3:+2968414 | None:intergenic |
| ACAGAACCAAACATGGTGCT+TGG | 0.522416 | 5.3:+2972459 | None:intergenic |
| ATTTGGTCCAACTCTAAGAA+AGG | 0.522891 | 5.3:-2970520 | MS.gene22278:CDS |
| ATGTCGCCAAAAGTTTCAGC+AGG | 0.523669 | 5.3:+2968616 | None:intergenic |
| AGGGACCAAACGATGGAGAA+GGG | 0.525654 | 5.3:-2972404 | MS.gene22278:CDS |
| TGAGATTGTTGGTGAACCAT+TGG | 0.526436 | 5.3:-2970171 | MS.gene22278:CDS |
| CATACAGCTGCGCGGTGCAG+TGG | 0.527189 | 5.3:+2962431 | None:intergenic |
| TCGATATCGGCGAGATCTTG+TGG | 0.529568 | 5.3:+2973253 | None:intergenic |
| GAGGGACCAAACGATGGAGA+AGG | 0.529699 | 5.3:-2972405 | MS.gene22278:CDS |
| GCTACAATGGAAGTCAGCTA+TGG | 0.532783 | 5.3:-2970593 | MS.gene22278:CDS |
| CAGAAACATATTCCCCATAT+GGG | 0.533568 | 5.3:-2962230 | MS.gene22278:CDS |
| CATTGGCCTGGTGATTATGC+TGG | 0.535461 | 5.3:-2973019 | MS.gene22278:CDS |
| TCAACTCTTCAGAGTCATGA+TGG | 0.536089 | 5.3:-2973043 | MS.gene22278:CDS |
| CTCTCTCCCCAACCACCAGA+TGG | 0.536827 | 5.3:+2968018 | None:intergenic |
| AAGGTTTCAGAAGATTGTCC+TGG | 0.537463 | 5.3:-2970398 | MS.gene22278:CDS |
| GGCCCGCAATTTATGTGCAA+AGG | 0.538650 | 5.3:-2971833 | MS.gene22278:intron |
| TTGTTTAATGTACGAAGCCA+TGG | 0.540863 | 5.3:+2973322 | None:intergenic |
| AAAGGCTGTCGAGACTGTAA+TGG | 0.544441 | 5.3:-2971117 | MS.gene22278:CDS |
| AATACTCGTTATATTTGCAT+AGG | 0.544620 | 5.3:-2971071 | MS.gene22278:CDS |
| TATGCATTATAGGAAGGATG+TGG | 0.544658 | 5.3:-2971990 | MS.gene22278:intron |
| CTACTAAAACTTACCAAGCC+AGG | 0.544748 | 5.3:+2972980 | None:intergenic |
| GGCTATGCTGGCTCTCATTG+AGG | 0.544878 | 5.3:-2966659 | MS.gene22278:CDS |
| ACATTGGCAAATAGACCATC+CGG | 0.547166 | 5.3:+2971959 | None:intergenic |
| AGCCATAACTCAGGAGGCAG+GGG | 0.548779 | 5.3:+2972179 | None:intergenic |
| AATCACTGCAGAATGAAGAT+GGG | 0.549445 | 5.3:-2969318 | MS.gene22278:intron |
| ATATCTTGCACGAGTGGGTG+AGG | 0.549536 | 5.3:+2971209 | None:intergenic |
| TAAAAGGGCTGATTGCTGCT+GGG | 0.551591 | 5.3:-2968104 | MS.gene22278:CDS |
| GTGTGACAACAACATTAAGA+AGG | 0.552439 | 5.3:-2973081 | MS.gene22278:CDS |
| TTGCAGAAGGAGGCAGTCCA+TGG | 0.553517 | 5.3:-2973339 | MS.gene22278:CDS |
| ACTCTAAGATTGCTTGGTGA+GGG | 0.559954 | 5.3:-2972423 | MS.gene22278:CDS |
| TGCCAAAGAGAATCCGATGA+AGG | 0.562401 | 5.3:-2973155 | MS.gene22278:CDS |
| GAATGGTGACTTTCCGCAAG+AGG | 0.565873 | 5.3:-2962387 | MS.gene22278:intron |
| TAATTACTCTGTCTATCACT+GGG | 0.569870 | 5.3:-2972655 | MS.gene22278:CDS |
| GAGCCATAACTCAGGAGGCA+GGG | 0.570773 | 5.3:+2972178 | None:intergenic |
| TTCCAGTCTACATCATGGTA+TGG | 0.571064 | 5.3:+2971859 | None:intergenic |
| TATGTATTACAGAATAAGGA+TGG | 0.571921 | 5.3:-2972507 | MS.gene22278:intron |
| GCCTTCAACAATACCTCTTG+CGG | 0.572976 | 5.3:+2962374 | None:intergenic |
| GAAGGATGTGGTGTCACTGC+CGG | 0.574105 | 5.3:-2971978 | MS.gene22278:CDS |
| TAACCTTTGCACATAAATTG+CGG | 0.575081 | 5.3:+2971830 | None:intergenic |
| TATCTATGGATTGCTGAAGA+TGG | 0.576188 | 5.3:-2970820 | MS.gene22278:CDS |
| TCGATCTTATAGCTGGTTGG+AGG | 0.576532 | 5.3:-2969272 | MS.gene22278:intron |
| AAGCCAGGCATAAGAAACAT+AGG | 0.576662 | 5.3:+2972995 | None:intergenic |
| CTACAATGGAAGTCAGCTAT+GGG | 0.577848 | 5.3:-2970592 | MS.gene22278:CDS |
| GAAATGGAAGAATGTATGGA+AGG | 0.579493 | 5.3:+2972156 | None:intergenic |
| TATTACAGAATAAGGATGGT+GGG | 0.583496 | 5.3:-2972503 | MS.gene22278:intron |
| TTCAGAGTCATGATGGACAT+TGG | 0.583711 | 5.3:-2973036 | MS.gene22278:CDS |
| TACTCTAAGATTGCTTGGTG+AGG | 0.584020 | 5.3:-2972424 | MS.gene22278:CDS |
| TTTCAACTAAAGATCATGGA+TGG | 0.584652 | 5.3:-2970328 | MS.gene22278:CDS |
| CATTTAGGAAACTATATCCC+AGG | 0.586640 | 5.3:-2968431 | MS.gene22278:CDS |
| AGGTCCCATGTAGTAAACAC+TGG | 0.589141 | 5.3:-2966685 | MS.gene22278:CDS |
| CAAAGAATATCTTGCACGAG+TGG | 0.591667 | 5.3:+2971203 | None:intergenic |
| CCTGATTCCAGTCTACATCA+TGG | 0.595918 | 5.3:+2971854 | None:intergenic |
| TCTAAGCAGCTCCCATCTGG+TGG | 0.600699 | 5.3:-2968030 | MS.gene22278:CDS |
| TGGAGAAGGGGATATGGAGA+AGG | 0.601781 | 5.3:-2972391 | MS.gene22278:CDS |
| GTATTACAGAATAAGGATGG+TGG | 0.602509 | 5.3:-2972504 | MS.gene22278:intron |
| TGGGAGTTCGATCCTAACTC+CGG | 0.605594 | 5.3:-2973280 | MS.gene22278:CDS |
| CTAACCAGGTATGGTTCTTG+GGG | 0.606522 | 5.3:-2968159 | MS.gene22278:intron |
| AGTCATGATGGACATTGGCC+TGG | 0.607121 | 5.3:-2973031 | MS.gene22278:CDS |
| TCTCTCCCCAACCACCAGAT+GGG | 0.609976 | 5.3:+2968019 | None:intergenic |
| TACAGAATAAGGATGGTGGG+TGG | 0.611556 | 5.3:-2972500 | MS.gene22278:intron |
| ATTCTCCCAACGCCCATATG+GGG | 0.616092 | 5.3:+2962218 | None:intergenic |
| ATCACTGCAGAATGAAGATG+GGG | 0.616662 | 5.3:-2969317 | MS.gene22278:intron |
| ACTCAAAACAGAACCAAACA+TGG | 0.622100 | 5.3:+2972452 | None:intergenic |
| GAGTGAGCTCATATGTTGCA+AGG | 0.623263 | 5.3:+2969293 | None:intergenic |
| AAAGAATATCTTGCACGAGT+GGG | 0.627826 | 5.3:+2971204 | None:intergenic |
| CCCATGTAGTAAACACTGGG+TGG | 0.632415 | 5.3:-2966681 | MS.gene22278:CDS |
| TGAAGATGGCATGAAAATGC+AGG | 0.633629 | 5.3:-2970806 | MS.gene22278:intron |
| ATATCTGACTGCACAGCCGA+AGG | 0.633759 | 5.3:-2970302 | MS.gene22278:CDS |
| CGTGACTGGATTCTTGAGCA+TGG | 0.634097 | 5.3:-2972366 | MS.gene22278:CDS |
| CAAAGCCTGAATTGCTGCTG+AGG | 0.637022 | 5.3:+2968458 | None:intergenic |
| CCATGTAGTAAACACTGGGT+GGG | 0.637163 | 5.3:-2966680 | MS.gene22278:CDS |
| TTTCCGTACAAGTAGCACAT+TGG | 0.637997 | 5.3:+2971943 | None:intergenic |
| TGTGACAACAACATTAAGAA+GGG | 0.639121 | 5.3:-2973080 | MS.gene22278:CDS |
| GCTACTCATATAACATCCTG+GGG | 0.640093 | 5.3:-2972339 | MS.gene22278:CDS |
| CTTGGTGAGGGACCAAACGA+TGG | 0.640301 | 5.3:-2972411 | MS.gene22278:CDS |
| GGGACCAAACGATGGAGAAG+GGG | 0.640614 | 5.3:-2972403 | MS.gene22278:CDS |
| TTATCTTTCATGTCAAAACA+AGG | 0.642811 | 5.3:-2967995 | MS.gene22278:intron |
| TCTTTGGGCAACTCTACACA+AGG | 0.644183 | 5.3:-2971186 | MS.gene22278:CDS |
| TACCATTTACTAAGATCACC+AGG | 0.645528 | 5.3:+2970380 | None:intergenic |
| TGGAAACTGAAAGTTGCAGA+AGG | 0.645676 | 5.3:-2973352 | MS.gene22278:CDS |
| CCACCCAGTGTTTACTACAT+GGG | 0.649679 | 5.3:+2966681 | None:intergenic |
| GGTAGAAGATCCATATTCAG+AGG | 0.657319 | 5.3:-2970875 | MS.gene22278:CDS |
| GGAAGGAGCCATAACTCAGG+AGG | 0.659506 | 5.3:+2972173 | None:intergenic |
| GGTCCCATGTAGTAAACACT+GGG | 0.659996 | 5.3:-2966684 | MS.gene22278:CDS |
| GATGTGGTGTCACTGCCGGA+TGG | 0.661963 | 5.3:-2971974 | MS.gene22278:CDS |
| ATAGGACCAGCATAATCACC+AGG | 0.665129 | 5.3:+2973013 | None:intergenic |
| TATGGAAGGAGCCATAACTC+AGG | 0.668533 | 5.3:+2972170 | None:intergenic |
| AAACTGAAAGTTGCAGAAGG+AGG | 0.670393 | 5.3:-2973349 | MS.gene22278:CDS |
| AGGTCTGCAATACATGACGA+CGG | 0.735163 | 5.3:+2962194 | None:intergenic |
| TTATCAAGCATACAGCTGCG+CGG | 0.750861 | 5.3:+2962423 | None:intergenic |
| CTACTCATATAACATCCTGG+GGG | 0.753036 | 5.3:-2972338 | MS.gene22278:CDS |
| GACTGGATTCTTGAGCATGG+TGG | 0.757197 | 5.3:-2972363 | MS.gene22278:CDS |
| AATTACTCTGTCTATCACTG+GGG | 0.766390 | 5.3:-2972654 | MS.gene22278:CDS |
| TCACTGCAGAATGAAGATGG+GGG | 0.767587 | 5.3:-2969316 | MS.gene22278:intron |
| CGTACATTAAACAATCACGT+CGG | 0.788206 | 5.3:-2973313 | MS.gene22278:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2962189 | 2973377 | 2962189 | ID=MS.gene22278 |
| chr5.3 | mRNA | 2962189 | 2973377 | 2962189 | ID=MS.gene22278.t1;Parent=MS.gene22278 |
| chr5.3 | exon | 2972994 | 2973377 | 2972994 | ID=MS.gene22278.t1.exon1;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2972994 | 2973377 | 2972994 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2972589 | 2972678 | 2972589 | ID=MS.gene22278.t1.exon2;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2972589 | 2972678 | 2972589 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2972323 | 2972517 | 2972323 | ID=MS.gene22278.t1.exon3;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2972323 | 2972517 | 2972323 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2972150 | 2972234 | 2972150 | ID=MS.gene22278.t1.exon4;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2972150 | 2972234 | 2972150 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2971834 | 2972000 | 2971834 | ID=MS.gene22278.t1.exon5;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2971834 | 2972000 | 2971834 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2971058 | 2971246 | 2971058 | ID=MS.gene22278.t1.exon6;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2971058 | 2971246 | 2971058 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2970807 | 2970920 | 2970807 | ID=MS.gene22278.t1.exon7;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2970807 | 2970920 | 2970807 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2970494 | 2970616 | 2970494 | ID=MS.gene22278.t1.exon8;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2970494 | 2970616 | 2970494 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2970295 | 2970417 | 2970295 | ID=MS.gene22278.t1.exon9;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2970295 | 2970417 | 2970295 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2970124 | 2970222 | 2970124 | ID=MS.gene22278.t1.exon10;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2970124 | 2970222 | 2970124 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2969273 | 2969329 | 2969273 | ID=MS.gene22278.t1.exon11;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2969273 | 2969329 | 2969273 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2968601 | 2968647 | 2968601 | ID=MS.gene22278.t1.exon12;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2968601 | 2968647 | 2968601 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2968351 | 2968494 | 2968351 | ID=MS.gene22278.t1.exon13;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2968351 | 2968494 | 2968351 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2967996 | 2968173 | 2967996 | ID=MS.gene22278.t1.exon14;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2967996 | 2968173 | 2967996 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2966651 | 2966731 | 2966651 | ID=MS.gene22278.t1.exon15;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2966651 | 2966731 | 2966651 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2962388 | 2962471 | 2962388 | ID=MS.gene22278.t1.exon16;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2962388 | 2962471 | 2962388 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| chr5.3 | exon | 2962189 | 2962302 | 2962189 | ID=MS.gene22278.t1.exon17;Parent=MS.gene22278.t1 |
| chr5.3 | CDS | 2962189 | 2962302 | 2962189 | ID=cds.MS.gene22278.t1;Parent=MS.gene22278.t1 |
| Gene Sequence |
| Protein sequence |
