Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21938.t1 | XP_003610947.1 | 98.9 | 757 | 8 | 0 | 1 | 757 | 1 | 757 | 0.00E+00 | 1605.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21938.t1 | Q9SXV6 | 88.2 | 756 | 89 | 0 | 1 | 756 | 1 | 756 | 0.0e+00 | 1464.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21938.t1 | G7K980 | 98.9 | 757 | 8 | 0 | 1 | 757 | 1 | 757 | 0.0e+00 | 1605.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050085 | MS.gene21938 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene21938 | 0.809349 | 1.98E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene21938 | -0.802261 | 6.10E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene21938 | 0.809421 | 1.91E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene21938 | 0.803783 | 2.96E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene21938 | 0.804686 | 1.92E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene21938 | 0.822225 | 2.65E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene21938 | 0.83974 | 1.32E-57 | -1.69E-46 |
| MS.gene059007 | MS.gene21938 | 0.819101 | 1.39E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene21938 | 0.802406 | 5.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034307 | MS.gene21938 | PPI |
| MS.gene053114 | MS.gene21938 | PPI |
| MS.gene50096 | MS.gene21938 | PPI |
| MS.gene21938 | MS.gene000594 | PPI |
| MS.gene37340 | MS.gene21938 | PPI |
| MS.gene034308 | MS.gene21938 | PPI |
| MS.gene011204 | MS.gene21938 | PPI |
| MS.gene98129 | MS.gene21938 | PPI |
| MS.gene07774 | MS.gene21938 | PPI |
| MS.gene87166 | MS.gene21938 | PPI |
| MS.gene98126 | MS.gene21938 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21938.t1 | MTR_5g008810 | 98.943 | 757 | 8 | 0 | 1 | 757 | 1 | 757 | 0.0 | 1570 |
| MS.gene21938.t1 | MTR_7g062020 | 64.752 | 766 | 258 | 4 | 1 | 754 | 1 | 766 | 0.0 | 1059 |
| MS.gene21938.t1 | MTR_6g088140 | 64.822 | 759 | 243 | 4 | 1 | 754 | 1 | 740 | 0.0 | 1052 |
| MS.gene21938.t1 | MTR_6g093100 | 64.083 | 774 | 258 | 6 | 1 | 754 | 1 | 774 | 0.0 | 1048 |
| MS.gene21938.t1 | MTR_6g093180 | 60.132 | 755 | 298 | 3 | 1 | 754 | 1 | 753 | 0.0 | 983 |
| MS.gene21938.t1 | MTR_4g005270 | 58.862 | 756 | 307 | 4 | 1 | 753 | 1 | 755 | 0.0 | 959 |
| MS.gene21938.t1 | MTR_4g005190 | 58.466 | 756 | 310 | 4 | 1 | 753 | 1 | 755 | 0.0 | 958 |
| MS.gene21938.t1 | MTR_8g016975 | 57.332 | 757 | 319 | 4 | 1 | 754 | 1 | 756 | 0.0 | 951 |
| MS.gene21938.t1 | MTR_0013s0230 | 58.520 | 757 | 309 | 5 | 1 | 753 | 1 | 756 | 0.0 | 944 |
| MS.gene21938.t1 | MTR_6g034985 | 56.821 | 755 | 323 | 3 | 1 | 754 | 1 | 753 | 0.0 | 925 |
| MS.gene21938.t1 | MTR_6g088140 | 63.338 | 671 | 223 | 3 | 1 | 667 | 1 | 652 | 0.0 | 915 |
| MS.gene21938.t1 | MTR_6g035010 | 56.101 | 754 | 328 | 3 | 1 | 753 | 1 | 752 | 0.0 | 912 |
| MS.gene21938.t1 | MTR_8g016960 | 54.749 | 758 | 332 | 6 | 1 | 754 | 1 | 751 | 0.0 | 897 |
| MS.gene21938.t1 | MTR_8g017020 | 56.719 | 707 | 301 | 4 | 50 | 754 | 19 | 722 | 0.0 | 879 |
| MS.gene21938.t1 | MTR_7g034535 | 59.157 | 688 | 277 | 4 | 69 | 753 | 5 | 691 | 0.0 | 871 |
| MS.gene21938.t1 | MTR_4g005190 | 57.526 | 671 | 281 | 4 | 1 | 668 | 1 | 670 | 0.0 | 838 |
| MS.gene21938.t1 | MTR_3g436160 | 58.395 | 673 | 273 | 5 | 83 | 753 | 27 | 694 | 0.0 | 823 |
| MS.gene21938.t1 | MTR_8g016940 | 51.128 | 266 | 128 | 1 | 489 | 754 | 2 | 265 | 1.90e-90 | 285 |
| MS.gene21938.t1 | MTR_8g016570 | 58.065 | 62 | 26 | 0 | 693 | 754 | 28 | 89 | 2.60e-18 | 82.4 |
| MS.gene21938.t1 | MTR_8g017040 | 51.429 | 70 | 33 | 1 | 1 | 69 | 1 | 70 | 4.40e-17 | 78.6 |
| MS.gene21938.t1 | MTR_3g436170 | 52.239 | 67 | 31 | 1 | 1 | 66 | 1 | 67 | 1.24e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21938.t1 | AT2G07050 | 80.637 | 754 | 146 | 0 | 1 | 754 | 1 | 754 | 0.0 | 1326 |
| MS.gene21938.t1 | AT2G07050 | 82.931 | 662 | 113 | 0 | 93 | 754 | 2 | 663 | 0.0 | 1190 |
| MS.gene21938.t1 | AT3G45130 | 66.050 | 757 | 251 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1023 |
| MS.gene21938.t1 | AT3G45130 | 66.050 | 757 | 251 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1023 |
| MS.gene21938.t1 | AT3G45130 | 66.050 | 757 | 251 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1022 |
| MS.gene21938.t1 | AT3G45130 | 66.050 | 757 | 251 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1022 |
| MS.gene21938.t1 | AT3G45130 | 66.050 | 757 | 251 | 3 | 1 | 754 | 1 | 754 | 0.0 | 1022 |
| MS.gene21938.t1 | AT1G78955 | 58.653 | 757 | 308 | 4 | 1 | 753 | 1 | 756 | 0.0 | 946 |
| MS.gene21938.t1 | AT1G78960 | 57.500 | 760 | 318 | 4 | 1 | 756 | 1 | 759 | 0.0 | 942 |
| MS.gene21938.t1 | AT1G78960 | 57.500 | 760 | 318 | 4 | 1 | 756 | 1 | 759 | 0.0 | 942 |
| MS.gene21938.t1 | AT1G78960 | 57.500 | 760 | 318 | 4 | 1 | 756 | 1 | 759 | 0.0 | 942 |
| MS.gene21938.t1 | AT1G78950 | 58.124 | 757 | 312 | 4 | 1 | 753 | 10 | 765 | 0.0 | 929 |
| MS.gene21938.t1 | AT1G78950 | 58.124 | 757 | 312 | 4 | 1 | 753 | 1 | 756 | 0.0 | 929 |
| MS.gene21938.t1 | AT1G78960 | 57.320 | 724 | 304 | 4 | 1 | 720 | 1 | 723 | 0.0 | 891 |
| MS.gene21938.t1 | AT1G78955 | 59.768 | 691 | 275 | 3 | 65 | 753 | 2 | 691 | 0.0 | 880 |
| MS.gene21938.t1 | AT1G66960 | 53.510 | 755 | 346 | 4 | 1 | 751 | 1 | 754 | 0.0 | 872 |
| MS.gene21938.t1 | AT1G66960 | 53.510 | 755 | 346 | 4 | 1 | 751 | 1 | 754 | 0.0 | 872 |
| MS.gene21938.t1 | AT1G66960 | 53.510 | 755 | 346 | 4 | 1 | 751 | 10 | 763 | 0.0 | 872 |
| MS.gene21938.t1 | AT1G66960 | 53.510 | 755 | 346 | 4 | 1 | 751 | 1 | 754 | 0.0 | 872 |
| MS.gene21938.t1 | AT1G78970 | 54.822 | 757 | 336 | 4 | 1 | 754 | 1 | 754 | 0.0 | 872 |
| MS.gene21938.t1 | AT1G78970 | 54.822 | 757 | 336 | 4 | 1 | 754 | 1 | 754 | 0.0 | 872 |
| MS.gene21938.t1 | AT1G78970 | 54.822 | 757 | 336 | 4 | 1 | 754 | 1 | 754 | 0.0 | 872 |
| MS.gene21938.t1 | AT1G78955 | 58.850 | 661 | 269 | 3 | 65 | 723 | 2 | 661 | 0.0 | 827 |
| MS.gene21938.t1 | AT5G36150 | 49.406 | 757 | 378 | 4 | 1 | 753 | 1 | 756 | 0.0 | 815 |
| MS.gene21938.t1 | AT5G36150 | 49.406 | 757 | 378 | 4 | 1 | 753 | 1 | 756 | 0.0 | 815 |
| MS.gene21938.t1 | AT1G78500 | 50.329 | 761 | 367 | 6 | 1 | 751 | 1 | 760 | 0.0 | 813 |
| MS.gene21938.t1 | AT1G78500 | 50.329 | 761 | 367 | 6 | 1 | 751 | 1 | 760 | 0.0 | 813 |
| MS.gene21938.t1 | AT4G15370 | 49.275 | 759 | 369 | 6 | 1 | 751 | 1 | 751 | 0.0 | 796 |
| MS.gene21938.t1 | AT1G78960 | 59.770 | 609 | 242 | 3 | 150 | 756 | 1 | 608 | 0.0 | 792 |
| MS.gene21938.t1 | AT4G15370 | 49.081 | 762 | 369 | 7 | 1 | 751 | 1 | 754 | 0.0 | 791 |
| MS.gene21938.t1 | AT4G15340 | 49.340 | 758 | 374 | 6 | 1 | 749 | 1 | 757 | 0.0 | 787 |
| MS.gene21938.t1 | AT5G48010 | 47.889 | 758 | 385 | 5 | 1 | 749 | 1 | 757 | 0.0 | 783 |
| MS.gene21938.t1 | AT5G48010 | 47.493 | 758 | 380 | 6 | 1 | 749 | 1 | 749 | 0.0 | 769 |
| MS.gene21938.t1 | AT1G78955 | 58.940 | 604 | 245 | 3 | 65 | 666 | 2 | 604 | 0.0 | 758 |
| MS.gene21938.t1 | AT1G78955 | 61.168 | 582 | 223 | 3 | 174 | 753 | 1 | 581 | 0.0 | 751 |
| MS.gene21938.t1 | AT5G42600 | 47.417 | 755 | 388 | 6 | 1 | 749 | 1 | 752 | 0.0 | 735 |
| MS.gene21938.t1 | AT3G29255 | 45.119 | 758 | 345 | 9 | 2 | 751 | 6 | 700 | 0.0 | 669 |
| MS.gene21938.t1 | AT4G15340 | 47.887 | 568 | 286 | 6 | 1 | 559 | 1 | 567 | 0.0 | 562 |
| MS.gene21938.t1 | AT1G78480 | 37.143 | 140 | 82 | 3 | 58 | 194 | 36 | 172 | 1.98e-19 | 87.8 |
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTTGGTTTGGGGTAAA+AGG | 0.154236 | 5.1:-2808586 | MS.gene21938:CDS |
| TGTTCAGGTGTATTCAAATT+TGG | 0.159318 | 5.1:-2807235 | MS.gene21938:intron |
| TCACTTATGGCACTTGGTTT+GGG | 0.188803 | 5.1:-2808594 | MS.gene21938:CDS |
| ACTAACCTAATTGAAGAATT+TGG | 0.231134 | 5.1:-2810991 | MS.gene21938:CDS |
| CACTCGTGCAAGATATTCTT+TGG | 0.236923 | 5.1:-2811656 | MS.gene21938:CDS |
| AACTTGAAAGCCTCTGAATT+TGG | 0.237029 | 5.1:+2811319 | None:intergenic |
| TTCACTTATGGCACTTGGTT+TGG | 0.237239 | 5.1:-2808595 | MS.gene21938:CDS |
| TCAAGAATTACCTTATTTAC+AGG | 0.242278 | 5.1:+2811501 | None:intergenic |
| TGGGGAGTTTGCTTCACTTA+TGG | 0.245949 | 5.1:-2808607 | MS.gene21938:CDS |
| TTCAGGCTTTGTCAACATTT+AGG | 0.256339 | 5.1:-2808912 | MS.gene21938:CDS |
| TTGGACCAAATTCTTCAATT+AGG | 0.261321 | 5.1:+2810986 | None:intergenic |
| TCTACCATTTCAGGAAATAA+TGG | 0.264459 | 5.1:-2802813 | MS.gene21938:intron |
| CAAGGATCCATGATTATCTA+TGG | 0.267663 | 5.1:-2811288 | MS.gene21938:CDS |
| AAATGTCATTATCTCATTAC+AGG | 0.283951 | 5.1:-2810577 | MS.gene21938:intron |
| CAAGGCCAATTCATGAAAAT+AGG | 0.293099 | 5.1:+2811609 | None:intergenic |
| GATAATATTGTTGGTGTGAT+TGG | 0.294184 | 5.1:+2812361 | None:intergenic |
| TATTTCTTCCCGACGATGCC+TGG | 0.295572 | 5.1:+2808879 | None:intergenic |
| TTGACGAACGGTTTCGATAT+CGG | 0.309423 | 5.1:+2813691 | None:intergenic |
| GCCAATCCTGCCGAAACTTT+TGG | 0.317656 | 5.1:-2809088 | MS.gene21938:CDS |
| GCAGCTCCCATCTGGTGGTT+GGG | 0.324085 | 5.1:-2808491 | MS.gene21938:CDS |
| TGCTAACCAGGTATGGTTCT+TGG | 0.326714 | 5.1:-2808627 | MS.gene21938:intron |
| TTGCATAGGTCCTGTAAATA+AGG | 0.328833 | 5.1:-2811511 | MS.gene21938:intron |
| TTCTTACCTGATGATTATAA+AGG | 0.337163 | 5.1:+2813036 | None:intergenic |
| GTGTACCTCAGCAGCAATTC+AGG | 0.340622 | 5.1:-2808929 | MS.gene21938:CDS |
| AAACGATGGAGATGGGGATA+TGG | 0.348717 | 5.1:-2812851 | MS.gene21938:CDS |
| AGGAGGCAGGGGATTATTTC+CGG | 0.351958 | 5.1:+2812644 | None:intergenic |
| AATAATTACTTTCAGTCCTT+CGG | 0.352555 | 5.1:+2810740 | None:intergenic |
| GGCTCTCATTGAGGCTGAAC+AGG | 0.356102 | 5.1:-2807169 | MS.gene21938:intron |
| TACAAGCTTCAGATGGTTCA+TGG | 0.356145 | 5.1:-2808816 | MS.gene21938:intron |
| GTCCTGGTGATCTTAGTAAA+TGG | 0.357085 | 5.1:-2810836 | MS.gene21938:CDS |
| AACCTTTGCACATAAATTGC+GGG | 0.357292 | 5.1:+2812285 | None:intergenic |
| GAACAAGAACCTGGATGAAA+TGG | 0.363407 | 5.1:+2812594 | None:intergenic |
| GCTAACCAGGTATGGTTCTT+GGG | 0.364562 | 5.1:-2808626 | MS.gene21938:intron |
| TCCATGATCTTTAGTTGAAA+AGG | 0.374641 | 5.1:+2810785 | None:intergenic |
| TTTCTCAAAGATAATATTGT+TGG | 0.376453 | 5.1:+2812352 | None:intergenic |
| CTACCATTTCAGGAAATAAT+GGG | 0.377145 | 5.1:-2802812 | MS.gene21938:intron |
| AACAATGTCGCCAAAAGTTT+CGG | 0.380606 | 5.1:+2809078 | None:intergenic |
| GGTCCTATGTTTCTTATGCC+TGG | 0.385468 | 5.1:-2813449 | MS.gene21938:CDS |
| TCACGTCGGCAGACAACTTT+GGG | 0.389059 | 5.1:-2813750 | MS.gene21938:CDS |
| AAACACTGGGTGGGCTATGC+TGG | 0.390877 | 5.1:-2807190 | MS.gene21938:CDS |
| ACATCTTTCACTCTCACTTT+CGG | 0.391173 | 5.1:+2813575 | None:intergenic |
| TCTTGTGGCGATCCGGAGTT+AGG | 0.392406 | 5.1:+2813719 | None:intergenic |
| GAAGGTCCAAGCACCATGTT+TGG | 0.406473 | 5.1:-2812919 | MS.gene21938:CDS |
| CTGTCTAAGCAGCTCCCATC+TGG | 0.406747 | 5.1:-2808499 | MS.gene21938:CDS |
| CAGAATAAGGATGGTGGGTG+GGG | 0.410991 | 5.1:-2812952 | MS.gene21938:CDS |
| ATTCAAATTTGGAAAGCAAC+AGG | 0.422710 | 5.1:-2807224 | MS.gene21938:CDS |
| TCGTTACCTTTATAATCATC+AGG | 0.425456 | 5.1:-2813042 | MS.gene21938:intron |
| GTATGAGCCTTTCTTAGAGT+TGG | 0.426533 | 5.1:+2810967 | None:intergenic |
| TATGTTACTCTAAGATTGCT+TGG | 0.426624 | 5.1:-2812883 | MS.gene21938:CDS |
| ACAGAAACATATTCCCCATA+TGG | 0.426625 | 5.1:-2802751 | MS.gene21938:CDS |
| TATGTTTCTTATGCCTGGCT+TGG | 0.426756 | 5.1:-2813444 | MS.gene21938:intron |
| CAGTGGTGTTGGATCTCTCT+TGG | 0.433214 | 5.1:+2802968 | None:intergenic |
| TTCGGTATCACTTCCTTCAT+CGG | 0.438591 | 5.1:+2813593 | None:intergenic |
| GCACTTGGTTTGGGGTAAAA+GGG | 0.440113 | 5.1:-2808585 | MS.gene21938:CDS |
| GTAAAAGGGCTGATTGCTGC+TGG | 0.442118 | 5.1:-2808571 | MS.gene21938:CDS |
| TGCTAAATATGCTTTGCTGC+TGG | 0.443767 | 5.1:-2811351 | MS.gene21938:CDS |
| TCGGCTGTGCAGTCAGATAT+TGG | 0.447702 | 5.1:+2810759 | None:intergenic |
| ATCCCCTGCCTCCTGAGTTA+TGG | 0.448287 | 5.1:-2812635 | MS.gene21938:CDS |
| AGCAGCTCCCATCTGGTGGT+TGG | 0.448991 | 5.1:-2808492 | MS.gene21938:CDS |
| GTGCTACTCATATAACATCC+TGG | 0.451599 | 5.1:-2812795 | MS.gene21938:CDS |
| ATATCCCCATCTCCATCGTT+TGG | 0.452239 | 5.1:+2812853 | None:intergenic |
| GTATTCTCCCAACGCCCATA+TGG | 0.453168 | 5.1:+2802736 | None:intergenic |
| TTGTACGGAAAGAGGTTTGT+TGG | 0.453298 | 5.1:-2812385 | MS.gene21938:CDS |
| CAATCACTGCAGAATGAAGA+TGG | 0.453523 | 5.1:-2809773 | MS.gene21938:intron |
| ATCACGTCGGCAGACAACTT+TGG | 0.455540 | 5.1:-2813751 | MS.gene21938:CDS |
| CCATGATGTAGACTGGAATC+AGG | 0.455918 | 5.1:-2812308 | MS.gene21938:CDS |
| TGTCGTTGTTGGTAGGTACT+TGG | 0.456413 | 5.1:-2812681 | MS.gene21938:intron |
| CTTGGAGTGTTTGAATGGTC+CGG | 0.458818 | 5.1:-2812663 | MS.gene21938:CDS |
| TATTCTCCCAACGCCCATAT+GGG | 0.459458 | 5.1:+2802737 | None:intergenic |
| GCCAAAAGTTTCGGCAGGAT+TGG | 0.460046 | 5.1:+2809087 | None:intergenic |
| AACTATATCCCAGGCATCGT+CGG | 0.461132 | 5.1:-2808888 | MS.gene21938:CDS |
| GGGTGGGGTTTGCATATTGA+AGG | 0.463918 | 5.1:-2812937 | MS.gene21938:CDS |
| CTATCTAAAGTGAAATCAAC+AGG | 0.464113 | 5.1:+2802694 | None:intergenic |
| CATAGATAATCATGGATCCT+TGG | 0.470111 | 5.1:+2811289 | None:intergenic |
| AGGGACCAAACGATGGAGAT+GGG | 0.470591 | 5.1:-2812858 | MS.gene21938:CDS |
| GGATGAAATGGAAGAATGTA+TGG | 0.473706 | 5.1:+2812606 | None:intergenic |
| ATATGGAGAAGGCACGTGAC+TGG | 0.476887 | 5.1:-2812834 | MS.gene21938:CDS |
| TTCTTTGCTATATAGTTATG+TGG | 0.477165 | 5.1:-2808953 | MS.gene21938:intron |
| CACTTATGGCACTTGGTTTG+GGG | 0.478518 | 5.1:-2808593 | MS.gene21938:CDS |
| GCTAAATATGCTTTGCTGCT+GGG | 0.479109 | 5.1:-2811350 | MS.gene21938:CDS |
| CCCACCCAGTGTTTACTACA+TGG | 0.481032 | 5.1:+2807199 | None:intergenic |
| TTTGCTTCACTTATGGCACT+TGG | 0.482779 | 5.1:-2808600 | MS.gene21938:CDS |
| CCATGATCTTTAGTTGAAAA+GGG | 0.483692 | 5.1:+2810786 | None:intergenic |
| CAGCTCCCATCTGGTGGTTG+GGG | 0.485523 | 5.1:-2808490 | MS.gene21938:CDS |
| GAGGGACCAAACGATGGAGA+TGG | 0.488078 | 5.1:-2812859 | MS.gene21938:CDS |
| ACTCGTGCAAGATATTCTTT+GGG | 0.489176 | 5.1:-2811655 | MS.gene21938:CDS |
| ATATTCCCCATATGGGCGTT+GGG | 0.489177 | 5.1:-2802743 | MS.gene21938:CDS |
| GTAATTACTCTGTCTATCAC+TGG | 0.492845 | 5.1:-2813110 | MS.gene21938:CDS |
| ATGCTTGATAAATTCTCAAA+TGG | 0.493806 | 5.1:-2802931 | MS.gene21938:CDS |
| AAAATTGCACCTGAGATTGT+TGG | 0.494234 | 5.1:-2810636 | MS.gene21938:CDS |
| ACTATATCCCAGGCATCGTC+GGG | 0.496045 | 5.1:-2808887 | MS.gene21938:CDS |
| TTGCCAATGTGCTACTTGTA+CGG | 0.496391 | 5.1:-2812400 | MS.gene21938:CDS |
| TGCTACTCATATAACATCCT+GGG | 0.497785 | 5.1:-2812794 | MS.gene21938:CDS |
| GGCGAGATCTTGTGGCGATC+CGG | 0.498854 | 5.1:+2813712 | None:intergenic |
| TGTGCTACTTGTACGGAAAG+AGG | 0.500165 | 5.1:-2812393 | MS.gene21938:CDS |
| TATAATCTCTTTGCATCCAA+TGG | 0.500385 | 5.1:+2810609 | None:intergenic |
| TACATTCTTCCATTTCATCC+AGG | 0.500398 | 5.1:-2812603 | MS.gene21938:intron |
| GGAGCCATAACTCAGGAGGC+AGG | 0.500631 | 5.1:+2812631 | None:intergenic |
| CAGCAATCCATAGATAATCA+TGG | 0.500824 | 5.1:+2811281 | None:intergenic |
| CTTTCAAGTTGCATCTTCCA+AGG | 0.503157 | 5.1:-2811306 | MS.gene21938:CDS |
| AATGGTTCACCAACAATCTC+AGG | 0.503298 | 5.1:+2810627 | None:intergenic |
| ACAGAATAAGGATGGTGGGT+GGG | 0.505290 | 5.1:-2812953 | MS.gene21938:intron |
| CATATTCCCCATATGGGCGT+TGG | 0.506392 | 5.1:-2802744 | MS.gene21938:CDS |
| TGGTACCGTCACATTTCAAA+AGG | 0.507661 | 5.1:-2810816 | MS.gene21938:CDS |
| AGGTACTTGGAGTGTTTGAA+TGG | 0.508132 | 5.1:-2812668 | MS.gene21938:CDS |
| GCTGCGCGGTGCAGTGGTGT+TGG | 0.509005 | 5.1:+2802957 | None:intergenic |
| ATAAATTCTCAAATGGAGAA+TGG | 0.509659 | 5.1:-2802924 | MS.gene21938:CDS |
| GTCACATTTCAAAAGGTGCT+TGG | 0.511679 | 5.1:-2810809 | MS.gene21938:CDS |
| CACTCGATCTTATAGCTGGT+TGG | 0.515521 | 5.1:-2809729 | MS.gene21938:CDS |
| CTTAACAGACGAGCATAGAA+AGG | 0.518691 | 5.1:-2813072 | MS.gene21938:CDS |
| TACCATACCATGATGTAGAC+TGG | 0.519792 | 5.1:-2812315 | MS.gene21938:CDS |
| TACATTCATTAAGAATTCAC+AGG | 0.520406 | 5.1:-2810947 | MS.gene21938:intron |
| AGCTCACTCGATCTTATAGC+TGG | 0.520911 | 5.1:-2809733 | MS.gene21938:CDS |
| ATTTCTTCCCGACGATGCCT+GGG | 0.521004 | 5.1:+2808880 | None:intergenic |
| ACAGAACCAAACATGGTGCT+TGG | 0.522416 | 5.1:+2812913 | None:intergenic |
| ATTTGGTCCAACTCTAAGAA+AGG | 0.522891 | 5.1:-2810974 | MS.gene21938:CDS |
| ATGTCGCCAAAAGTTTCGGC+AGG | 0.523669 | 5.1:+2809082 | None:intergenic |
| TCGATATCGGCGAGATCTTG+TGG | 0.524363 | 5.1:+2813704 | None:intergenic |
| TGAGATTGTTGGTGAACCAT+TGG | 0.526436 | 5.1:-2810625 | MS.gene21938:CDS |
| CATACAGCTGCGCGGTGCAG+TGG | 0.527189 | 5.1:+2802951 | None:intergenic |
| GCTACAATGGAAGTCAGCTA+TGG | 0.532783 | 5.1:-2811047 | MS.gene21938:CDS |
| CAGAAACATATTCCCCATAT+GGG | 0.533568 | 5.1:-2802750 | MS.gene21938:CDS |
| CATTGGCCTGGTGATTATGC+TGG | 0.535461 | 5.1:-2813470 | MS.gene21938:CDS |
| TCAACTCTTCAGAGTCATGA+TGG | 0.536089 | 5.1:-2813494 | MS.gene21938:CDS |
| CTCTCTCCCCAACCACCAGA+TGG | 0.536827 | 5.1:+2808484 | None:intergenic |
| AAGGTTTCAGAAGATTGTCC+TGG | 0.537463 | 5.1:-2810852 | MS.gene21938:CDS |
| GGCCCGCAATTTATGTGCAA+AGG | 0.538650 | 5.1:-2812287 | MS.gene21938:intron |
| TTGTTTAATGTACGAAGCCA+TGG | 0.540863 | 5.1:+2813773 | None:intergenic |
| AAAGGCTGTCGAGACTGTAA+TGG | 0.544441 | 5.1:-2811571 | MS.gene21938:CDS |
| AATACTCGTTATATTTGCAT+AGG | 0.544620 | 5.1:-2811525 | MS.gene21938:CDS |
| TATGCATTATAGGAAGGATG+TGG | 0.544658 | 5.1:-2812444 | MS.gene21938:intron |
| CTACTAAAACTTACCAAGCC+AGG | 0.544748 | 5.1:+2813431 | None:intergenic |
| GGCTATGCTGGCTCTCATTG+AGG | 0.544878 | 5.1:-2807178 | MS.gene21938:CDS |
| ACATTGGCAAATAGACCATC+CGG | 0.547166 | 5.1:+2812413 | None:intergenic |
| TGCCAAAGAAAATCCGATGA+AGG | 0.548071 | 5.1:-2813606 | MS.gene21938:CDS |
| AGCCATAACTCAGGAGGCAG+GGG | 0.548779 | 5.1:+2812633 | None:intergenic |
| AATCACTGCAGAATGAAGAT+GGG | 0.549445 | 5.1:-2809772 | MS.gene21938:intron |
| ATATCTTGCACGAGTGGGTG+AGG | 0.549536 | 5.1:+2811663 | None:intergenic |
| TAAAAGGGCTGATTGCTGCT+GGG | 0.551591 | 5.1:-2808570 | MS.gene21938:CDS |
| TTGCAGAAGGAGGCAGTCCA+TGG | 0.553517 | 5.1:-2813790 | MS.gene21938:CDS |
| GTGTGACAACGACATTAAGA+AGG | 0.556051 | 5.1:-2813532 | MS.gene21938:CDS |
| ACTCTAAGATTGCTTGGTGA+GGG | 0.559954 | 5.1:-2812877 | MS.gene21938:CDS |
| GAATGGTGACTTTCCGCAAG+AGG | 0.565873 | 5.1:-2802907 | MS.gene21938:intron |
| TAATTACTCTGTCTATCACT+GGG | 0.569870 | 5.1:-2813109 | MS.gene21938:CDS |
| GAGCCATAACTCAGGAGGCA+GGG | 0.570773 | 5.1:+2812632 | None:intergenic |
| TTCCAGTCTACATCATGGTA+TGG | 0.571064 | 5.1:+2812313 | None:intergenic |
| TATGTATTACAGAATAAGGA+TGG | 0.571921 | 5.1:-2812961 | MS.gene21938:intron |
| GCCTTCAACAATACCTCTTG+CGG | 0.572976 | 5.1:+2802894 | None:intergenic |
| GAAGGATGTGGTGTCACTGC+CGG | 0.574105 | 5.1:-2812432 | MS.gene21938:CDS |
| TAACCTTTGCACATAAATTG+CGG | 0.575081 | 5.1:+2812284 | None:intergenic |
| TATCTATGGATTGCTGAAGA+TGG | 0.576188 | 5.1:-2811274 | MS.gene21938:CDS |
| TCGATCTTATAGCTGGTTGG+AGG | 0.576532 | 5.1:-2809726 | MS.gene21938:intron |
| AAGCCAGGCATAAGAAACAT+AGG | 0.576662 | 5.1:+2813446 | None:intergenic |
| CTACAATGGAAGTCAGCTAT+GGG | 0.577848 | 5.1:-2811046 | MS.gene21938:CDS |
| GAAATGGAAGAATGTATGGA+AGG | 0.579493 | 5.1:+2812610 | None:intergenic |
| TATTACAGAATAAGGATGGT+GGG | 0.583496 | 5.1:-2812957 | MS.gene21938:intron |
| TTCAGAGTCATGATGGACAT+TGG | 0.583711 | 5.1:-2813487 | MS.gene21938:CDS |
| TACTCTAAGATTGCTTGGTG+AGG | 0.584020 | 5.1:-2812878 | MS.gene21938:CDS |
| TTTCAACTAAAGATCATGGA+TGG | 0.584652 | 5.1:-2810782 | MS.gene21938:CDS |
| CATTTAGGAAACTATATCCC+AGG | 0.586640 | 5.1:-2808897 | MS.gene21938:CDS |
| AGGTCCCATGTAGTAAACAC+TGG | 0.589141 | 5.1:-2807204 | MS.gene21938:CDS |
| CAAAGAATATCTTGCACGAG+TGG | 0.591667 | 5.1:+2811657 | None:intergenic |
| CCTGATTCCAGTCTACATCA+TGG | 0.595918 | 5.1:+2812308 | None:intergenic |
| TGGAGATGGGGATATGGAGA+AGG | 0.599341 | 5.1:-2812845 | MS.gene21938:CDS |
| TCTAAGCAGCTCCCATCTGG+TGG | 0.600699 | 5.1:-2808496 | MS.gene21938:CDS |
| GTATTACAGAATAAGGATGG+TGG | 0.602509 | 5.1:-2812958 | MS.gene21938:intron |
| TGGGAGTTCGATCCTAACTC+CGG | 0.605594 | 5.1:-2813731 | MS.gene21938:CDS |
| CTAACCAGGTATGGTTCTTG+GGG | 0.606522 | 5.1:-2808625 | MS.gene21938:intron |
| AGTCATGATGGACATTGGCC+TGG | 0.607121 | 5.1:-2813482 | MS.gene21938:CDS |
| TCTCTCCCCAACCACCAGAT+GGG | 0.609976 | 5.1:+2808485 | None:intergenic |
| TACAGAATAAGGATGGTGGG+TGG | 0.611556 | 5.1:-2812954 | MS.gene21938:intron |
| ATTCTCCCAACGCCCATATG+GGG | 0.616092 | 5.1:+2802738 | None:intergenic |
| ATCACTGCAGAATGAAGATG+GGG | 0.616662 | 5.1:-2809771 | MS.gene21938:intron |
| ACTCAAAACAGAACCAAACA+TGG | 0.622100 | 5.1:+2812906 | None:intergenic |
| GAGTGAGCTCATATGTTGCA+AGG | 0.623263 | 5.1:+2809747 | None:intergenic |
| AAAGAATATCTTGCACGAGT+GGG | 0.627826 | 5.1:+2811658 | None:intergenic |
| CCCATGTAGTAAACACTGGG+TGG | 0.632415 | 5.1:-2807200 | MS.gene21938:CDS |
| TGAAGATGGCATGAAAATGC+AGG | 0.633629 | 5.1:-2811260 | MS.gene21938:intron |
| ATATCTGACTGCACAGCCGA+AGG | 0.633759 | 5.1:-2810756 | MS.gene21938:CDS |
| CGTGACTGGATTCTTGAGCA+TGG | 0.634097 | 5.1:-2812820 | MS.gene21938:CDS |
| CAAAGCCTGAATTGCTGCTG+AGG | 0.637022 | 5.1:+2808924 | None:intergenic |
| CCATGTAGTAAACACTGGGT+GGG | 0.637163 | 5.1:-2807199 | MS.gene21938:CDS |
| TTTCCGTACAAGTAGCACAT+TGG | 0.637997 | 5.1:+2812397 | None:intergenic |
| GCTACTCATATAACATCCTG+GGG | 0.640093 | 5.1:-2812793 | MS.gene21938:CDS |
| CTTGGTGAGGGACCAAACGA+TGG | 0.640301 | 5.1:-2812865 | MS.gene21938:CDS |
| TTATCTTTCATGTCAAAACA+AGG | 0.642811 | 5.1:-2808461 | MS.gene21938:intron |
| TCTTTGGGCAACTCTACACA+AGG | 0.644183 | 5.1:-2811640 | MS.gene21938:CDS |
| TACCATTTACTAAGATCACC+AGG | 0.645528 | 5.1:+2810834 | None:intergenic |
| TGGAAACTGAAAGTTGCAGA+AGG | 0.645676 | 5.1:-2813803 | MS.gene21938:CDS |
| GGGACCAAACGATGGAGATG+GGG | 0.649411 | 5.1:-2812857 | MS.gene21938:CDS |
| CCACCCAGTGTTTACTACAT+GGG | 0.649679 | 5.1:+2807200 | None:intergenic |
| TGTGACAACGACATTAAGAA+GGG | 0.653264 | 5.1:-2813531 | MS.gene21938:CDS |
| GGTAGAAGATCCAAATTCAG+AGG | 0.657319 | 5.1:-2811329 | MS.gene21938:CDS |
| GGAAGGAGCCATAACTCAGG+AGG | 0.659506 | 5.1:+2812627 | None:intergenic |
| GGTCCCATGTAGTAAACACT+GGG | 0.659996 | 5.1:-2807203 | MS.gene21938:CDS |
| GATGTGGTGTCACTGCCGGA+TGG | 0.661963 | 5.1:-2812428 | MS.gene21938:CDS |
| ATAGGACCAGCATAATCACC+AGG | 0.665129 | 5.1:+2813464 | None:intergenic |
| TATGGAAGGAGCCATAACTC+AGG | 0.668533 | 5.1:+2812624 | None:intergenic |
| AAACTGAAAGTTGCAGAAGG+AGG | 0.670393 | 5.1:-2813800 | MS.gene21938:CDS |
| AGGTCTGCAATACATGACGA+CGG | 0.735163 | 5.1:+2802714 | None:intergenic |
| TTATCAAGCATACAGCTGCG+CGG | 0.750861 | 5.1:+2802943 | None:intergenic |
| CTACTCATATAACATCCTGG+GGG | 0.753036 | 5.1:-2812792 | MS.gene21938:CDS |
| GACTGGATTCTTGAGCATGG+TGG | 0.757197 | 5.1:-2812817 | MS.gene21938:CDS |
| AATTACTCTGTCTATCACTG+GGG | 0.766390 | 5.1:-2813108 | MS.gene21938:CDS |
| TCACTGCAGAATGAAGATGG+GGG | 0.767587 | 5.1:-2809770 | MS.gene21938:intron |
| CGTACATTAAACAATCACGT+CGG | 0.788206 | 5.1:-2813764 | MS.gene21938:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 2802709 | 2813828 | 2802709 | ID=MS.gene21938 |
| chr5.1 | mRNA | 2802709 | 2813828 | 2802709 | ID=MS.gene21938.t1;Parent=MS.gene21938 |
| chr5.1 | exon | 2813445 | 2813828 | 2813445 | ID=MS.gene21938.t1.exon1;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2813445 | 2813828 | 2813445 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2813043 | 2813132 | 2813043 | ID=MS.gene21938.t1.exon2;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2813043 | 2813132 | 2813043 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2812777 | 2812971 | 2812777 | ID=MS.gene21938.t1.exon3;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2812777 | 2812971 | 2812777 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2812604 | 2812688 | 2812604 | ID=MS.gene21938.t1.exon4;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2812604 | 2812688 | 2812604 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2812288 | 2812454 | 2812288 | ID=MS.gene21938.t1.exon5;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2812288 | 2812454 | 2812288 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2811512 | 2811700 | 2811512 | ID=MS.gene21938.t1.exon6;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2811512 | 2811700 | 2811512 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2811261 | 2811374 | 2811261 | ID=MS.gene21938.t1.exon7;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2811261 | 2811374 | 2811261 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2810948 | 2811070 | 2810948 | ID=MS.gene21938.t1.exon8;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2810948 | 2811070 | 2810948 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2810749 | 2810871 | 2810749 | ID=MS.gene21938.t1.exon9;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2810749 | 2810871 | 2810749 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2810578 | 2810676 | 2810578 | ID=MS.gene21938.t1.exon10;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2810578 | 2810676 | 2810578 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2809727 | 2809783 | 2809727 | ID=MS.gene21938.t1.exon11;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2809727 | 2809783 | 2809727 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2809067 | 2809113 | 2809067 | ID=MS.gene21938.t1.exon12;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2809067 | 2809113 | 2809067 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2808817 | 2808960 | 2808817 | ID=MS.gene21938.t1.exon13;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2808817 | 2808960 | 2808817 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2808462 | 2808639 | 2808462 | ID=MS.gene21938.t1.exon14;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2808462 | 2808639 | 2808462 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2807170 | 2807250 | 2807170 | ID=MS.gene21938.t1.exon15;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2807170 | 2807250 | 2807170 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2802908 | 2802991 | 2802908 | ID=MS.gene21938.t1.exon16;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2802908 | 2802991 | 2802908 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| chr5.1 | exon | 2802709 | 2802822 | 2802709 | ID=MS.gene21938.t1.exon17;Parent=MS.gene21938.t1 |
| chr5.1 | CDS | 2802709 | 2802822 | 2802709 | ID=cds.MS.gene21938.t1;Parent=MS.gene21938.t1 |
| Gene Sequence |
| Protein sequence |
