Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002097.t1 | XP_003593047.1 | 97.6 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 6.80E-109 | 403.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002097.t1 | Q6IDL4 | 62.6 | 211 | 74 | 2 | 1 | 206 | 7 | 217 | 9.7e-72 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002097.t1 | A2Q3U2 | 97.6 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 4.9e-109 | 403.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047149 | MS.gene002097 | PPI |
| MS.gene002097 | MS.gene79918 | PPI |
| MS.gene002097 | MS.gene96773 | PPI |
| MS.gene002097 | MS.gene045327 | PPI |
| MS.gene002097 | MS.gene67216 | PPI |
| MS.gene002097 | MS.gene27948 | PPI |
| MS.gene002097 | MS.gene006810 | PPI |
| MS.gene75647 | MS.gene002097 | PPI |
| MS.gene002097 | MS.gene030925 | PPI |
| MS.gene002097 | MS.gene031477 | PPI |
| MS.gene002097 | MS.gene47907 | PPI |
| MS.gene002097 | MS.gene072012 | PPI |
| MS.gene77559 | MS.gene002097 | PPI |
| MS.gene002097 | MS.gene56516 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002097.t1 | MTR_2g007210 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 7.18e-151 | 417 |
| MS.gene002097.t1 | MTR_8g088940 | 72.170 | 212 | 52 | 3 | 1 | 206 | 1 | 211 | 6.58e-103 | 296 |
| MS.gene002097.t1 | MTR_3g072600 | 64.115 | 209 | 67 | 3 | 5 | 206 | 10 | 217 | 1.19e-93 | 273 |
| MS.gene002097.t1 | MTR_5g058140 | 69.519 | 187 | 55 | 1 | 20 | 206 | 28 | 212 | 1.62e-93 | 272 |
| MS.gene002097.t1 | MTR_8g088980 | 75.159 | 157 | 38 | 1 | 51 | 206 | 6 | 162 | 2.69e-83 | 244 |
| MS.gene002097.t1 | MTR_4g082315 | 41.451 | 193 | 105 | 2 | 20 | 206 | 26 | 216 | 1.73e-55 | 176 |
| MS.gene002097.t1 | MTR_6g012770 | 38.889 | 198 | 112 | 3 | 16 | 206 | 17 | 212 | 5.09e-51 | 164 |
| MS.gene002097.t1 | MTR_7g011490 | 37.019 | 208 | 123 | 2 | 5 | 206 | 7 | 212 | 9.12e-49 | 158 |
| MS.gene002097.t1 | MTR_5g042260 | 35.885 | 209 | 127 | 5 | 5 | 206 | 11 | 219 | 2.92e-40 | 137 |
| MS.gene002097.t1 | MTR_5g042270 | 35.955 | 178 | 109 | 4 | 31 | 206 | 11 | 185 | 2.52e-32 | 115 |
| MS.gene002097.t1 | MTR_5g042320 | 33.175 | 211 | 131 | 6 | 5 | 206 | 14 | 223 | 5.49e-29 | 108 |
| MS.gene002097.t1 | MTR_5g042320 | 31.325 | 166 | 104 | 6 | 5 | 161 | 14 | 178 | 2.94e-16 | 73.9 |
| MS.gene002097.t1 | MTR_7g095690 | 24.138 | 203 | 144 | 4 | 5 | 202 | 7 | 204 | 8.10e-15 | 70.5 |
| MS.gene002097.t1 | MTR_5g042300 | 30.894 | 123 | 71 | 2 | 84 | 206 | 40 | 148 | 3.31e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002097.t1 | AT1G09580 | 62.559 | 211 | 74 | 2 | 1 | 206 | 7 | 217 | 4.12e-97 | 281 |
| MS.gene002097.t1 | AT1G57620 | 64.706 | 204 | 71 | 1 | 4 | 206 | 9 | 212 | 4.14e-97 | 281 |
| MS.gene002097.t1 | AT1G21900 | 62.687 | 201 | 72 | 3 | 9 | 206 | 16 | 216 | 1.19e-87 | 257 |
| MS.gene002097.t1 | AT3G10780 | 53.234 | 201 | 83 | 4 | 14 | 206 | 20 | 217 | 4.48e-65 | 200 |
| MS.gene002097.t1 | AT1G26690 | 38.462 | 208 | 123 | 3 | 4 | 206 | 7 | 214 | 8.54e-53 | 169 |
| MS.gene002097.t1 | AT1G14010 | 39.130 | 207 | 121 | 3 | 4 | 206 | 7 | 212 | 5.51e-51 | 164 |
| MS.gene002097.t1 | AT2G03290 | 38.503 | 187 | 110 | 1 | 25 | 206 | 27 | 213 | 1.25e-48 | 158 |
| MS.gene002097.t1 | AT1G69460 | 40.104 | 192 | 111 | 2 | 19 | 206 | 23 | 214 | 2.07e-48 | 157 |
| MS.gene002097.t1 | AT3G29070 | 37.173 | 191 | 116 | 2 | 20 | 206 | 35 | 225 | 6.17e-43 | 144 |
| MS.gene002097.t1 | AT2G03040 | 33.571 | 140 | 88 | 1 | 25 | 159 | 27 | 166 | 2.02e-27 | 102 |
Find 41 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATCTTGATTGGAAAAT+TGG | 0.188133 | 2.3:-75292210 | MS.gene002097:CDS |
| GGAACTACATTGCATGCTTC+TGG | 0.224797 | 2.3:-75292266 | MS.gene002097:CDS |
| TCTAAATAAGCTTCTTCTTC+TGG | 0.233829 | 2.3:+75291633 | None:intergenic |
| TCAGAATAACGTTGTTGTTT+TGG | 0.238420 | 2.3:-75293274 | MS.gene002097:CDS |
| TCTCAGCATGTCATGCTATA+TGG | 0.316253 | 2.3:-75293341 | MS.gene002097:CDS |
| TGGATCTCATTACCTGCTTC+AGG | 0.363742 | 2.3:-75293321 | MS.gene002097:CDS |
| TATGGAGAAGAACATAGTTT+TGG | 0.368348 | 2.3:-75293385 | MS.gene002097:CDS |
| TGAGAATTTGATACGTCTTA+AGG | 0.387782 | 2.3:-75291893 | MS.gene002097:CDS |
| GAACTACATTGCATGCTTCT+GGG | 0.396433 | 2.3:-75292265 | MS.gene002097:CDS |
| TTGGAGTTGCAGCCAAGGAT+TGG | 0.411747 | 2.3:-75292191 | MS.gene002097:CDS |
| TGGAGTTGCAGCCAAGGATT+GGG | 0.416172 | 2.3:-75292190 | MS.gene002097:CDS |
| AATTTCTTCAGAAACACATT+TGG | 0.418353 | 2.3:+75293296 | None:intergenic |
| CTTGAGTTGAGAAAGCTAGA+AGG | 0.434730 | 2.3:-75291934 | MS.gene002097:CDS |
| TTATTATTAATCAGGGAAGC+AGG | 0.461349 | 2.3:-75291770 | MS.gene002097:intron |
| ACACATTTGGTTCCTGAAGC+AGG | 0.463623 | 2.3:+75293309 | None:intergenic |
| TGATGAATATTGTTTCCATA+TGG | 0.476604 | 2.3:+75292339 | None:intergenic |
| CCCACTCTCTGAAGTTGTAA+AGG | 0.497252 | 2.3:+75292287 | None:intergenic |
| TTCTGGGTTGCTCAGAATCA+TGG | 0.499578 | 2.3:-75292249 | MS.gene002097:CDS |
| ATTTGATACGTCTTAAGGAC+AGG | 0.501669 | 2.3:-75291888 | MS.gene002097:intron |
| AGCAACTGAATCCCAATCCT+TGG | 0.504479 | 2.3:+75292179 | None:intergenic |
| ATGTCAGTATGAATCTTGAT+TGG | 0.523723 | 2.3:-75292218 | MS.gene002097:CDS |
| GGTTGGTTTGATCGATCAAT+CGG | 0.527885 | 2.3:+75293234 | None:intergenic |
| CCTTTACAACTTCAGAGAGT+GGG | 0.532604 | 2.3:-75292287 | MS.gene002097:CDS |
| GAAAATTGGAGTTGCAGCCA+AGG | 0.537415 | 2.3:-75292196 | MS.gene002097:CDS |
| GCCTTTACAACTTCAGAGAG+TGG | 0.553325 | 2.3:-75292288 | MS.gene002097:CDS |
| TAATCAGGGAAGCAGGGATG+AGG | 0.558277 | 2.3:-75291763 | MS.gene002097:intron |
| TATTATTAATCAGGGAAGCA+GGG | 0.568467 | 2.3:-75291769 | MS.gene002097:intron |
| CATAATGAGAATGTTACAGT+TGG | 0.579792 | 2.3:-75292318 | MS.gene002097:CDS |
| TAAGACGTATCAAATTCTCA+TGG | 0.580213 | 2.3:+75291896 | None:intergenic |
| CCTTGACAGACAAGGTGGGT+TGG | 0.587584 | 2.3:+75293217 | None:intergenic |
| TGAATCAACAAATGCAAGAG+TGG | 0.591154 | 2.3:-75291732 | MS.gene002097:CDS |
| GAGAAAGCTAGAAGGATCAG+TGG | 0.595148 | 2.3:-75291926 | MS.gene002097:CDS |
| GTTGCTCAGAATCATGGAGG+TGG | 0.597042 | 2.3:-75292243 | MS.gene002097:CDS |
| CAACAAATGCAAGAGTGGCA+TGG | 0.610619 | 2.3:-75291727 | MS.gene002097:CDS |
| CCAACCCACCTTGTCTGTCA+AGG | 0.635683 | 2.3:-75293217 | MS.gene002097:intron |
| TGCTAGAAAAGAAAAGATTG+AGG | 0.649833 | 2.3:-75292160 | MS.gene002097:intron |
| ATGTACCTTGACAGACAAGG+TGG | 0.656190 | 2.3:+75293212 | None:intergenic |
| AAAGCTAGAAGGATCAGTGG+AGG | 0.667237 | 2.3:-75291923 | MS.gene002097:CDS |
| TGGGTTGCTCAGAATCATGG+AGG | 0.682301 | 2.3:-75292246 | MS.gene002097:CDS |
| AAAATGTACCTTGACAGACA+AGG | 0.703385 | 2.3:+75293209 | None:intergenic |
| TGTACCTTGACAGACAAGGT+GGG | 0.712167 | 2.3:+75293213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTATATTATTATTAATCA+GGG | - | chr2.3:75293241-75293260 | MS.gene002097:CDS | 15.0% |
| !! | TTGGTATATTATTATTAATC+AGG | - | chr2.3:75293240-75293259 | MS.gene002097:CDS | 15.0% |
| !!! | AAAATTTTATTGAGTAAAAG+AGG | + | chr2.3:75293187-75293206 | None:intergenic | 15.0% |
| !!! | AAATGGGTTTATTTTTTTTT+AGG | - | chr2.3:75292648-75292667 | MS.gene002097:intron | 15.0% |
| !!! | TTAATTTCATTATGTGTTTT+GGG | - | chr2.3:75291943-75291962 | MS.gene002097:CDS | 15.0% |
| !!! | TTTAATTTCATTATGTGTTT+TGG | - | chr2.3:75291942-75291961 | MS.gene002097:CDS | 15.0% |
| !! | ACAATCTATTGAATTGTAAT+TGG | - | chr2.3:75292533-75292552 | MS.gene002097:intron | 20.0% |
| !! | ATGTCAAATATAAAGTCATT+TGG | - | chr2.3:75292908-75292927 | MS.gene002097:intron | 20.0% |
| !!! | TAACAAAATCATAGTGATTT+TGG | - | chr2.3:75292368-75292387 | MS.gene002097:intron | 20.0% |
| !!! | TTACTTTAAGACTAAAAATG+AGG | - | chr2.3:75292427-75292446 | MS.gene002097:intron | 20.0% |
| ! | AACACACTACACTTAAAATA+AGG | + | chr2.3:75292602-75292621 | None:intergenic | 25.0% |
| ! | AATTTCTTCAGAAACACATT+TGG | + | chr2.3:75291725-75291744 | None:intergenic | 25.0% |
| ! | ATGAATCTTGATTGGAAAAT+TGG | - | chr2.3:75292808-75292827 | MS.gene002097:intron | 25.0% |
| ! | ATTGAATTGTAATTGGAGAA+TGG | - | chr2.3:75292540-75292559 | MS.gene002097:intron | 25.0% |
| ! | CTATGAAAGAAAATGGAAAA+GGG | + | chr2.3:75291863-75291882 | None:intergenic | 25.0% |
| ! | TGATGAATATTGTTTCCATA+TGG | + | chr2.3:75292682-75292701 | None:intergenic | 25.0% |
| ! | TTAAACGTGATTGATGTTTA+GGG | - | chr2.3:75293054-75293073 | MS.gene002097:intron | 25.0% |
| ! | TTCTCCTTATGATACAATAA+AGG | - | chr2.3:75291885-75291904 | MS.gene002097:intron | 25.0% |
| ! | TTGATTATGTTAGTGCATTT+CGG | - | chr2.3:75292014-75292033 | MS.gene002097:intron | 25.0% |
| ! | TTGTATTGTTAGTGTATGTT+TGG | - | chr2.3:75292331-75292350 | MS.gene002097:CDS | 25.0% |
| !!! | AAATCGCTTTTGTAAAATCA+CGG | - | chr2.3:75292247-75292266 | MS.gene002097:CDS | 25.0% |
| !!! | ATGGTTTAGTTTTATGTCTT+TGG | - | chr2.3:75293310-75293329 | MS.gene002097:CDS | 25.0% |
| !!! | TGGTTTAGTTTTATGTCTTT+GGG | - | chr2.3:75293311-75293330 | MS.gene002097:CDS | 25.0% |
| ATGTCAGTATGAATCTTGAT+TGG | - | chr2.3:75292800-75292819 | MS.gene002097:intron | 30.0% | |
| CACTCCTTTATTGTATCATA+AGG | + | chr2.3:75291892-75291911 | None:intergenic | 30.0% | |
| CATAATGAGAATGTTACAGT+TGG | - | chr2.3:75292700-75292719 | MS.gene002097:intron | 30.0% | |
| CCTATGAAAGAAAATGGAAA+AGG | + | chr2.3:75291864-75291883 | None:intergenic | 30.0% | |
| GAGAAACCTATGAAAGAAAA+TGG | + | chr2.3:75291870-75291889 | None:intergenic | 30.0% | |
| GTTAAACGTGATTGATGTTT+AGG | - | chr2.3:75293053-75293072 | MS.gene002097:intron | 30.0% | |
| TAAGACGTATCAAATTCTCA+TGG | + | chr2.3:75293125-75293144 | None:intergenic | 30.0% | |
| TAATAATGTAAGTGCGTGTT+TGG | + | chr2.3:75292410-75292429 | None:intergenic | 30.0% | |
| TATTATTAATCAGGGAAGCA+GGG | - | chr2.3:75293249-75293268 | MS.gene002097:CDS | 30.0% | |
| TCTTCAATTATAACATGTCG+CGG | - | chr2.3:75292476-75292495 | MS.gene002097:intron | 30.0% | |
| TGAGAATTTGATACGTCTTA+AGG | - | chr2.3:75293125-75293144 | MS.gene002097:intron | 30.0% | |
| TGATTATGTTAGTGCATTTC+GGG | - | chr2.3:75292015-75292034 | MS.gene002097:intron | 30.0% | |
| TGCTAGAAAAGAAAAGATTG+AGG | - | chr2.3:75292858-75292877 | MS.gene002097:intron | 30.0% | |
| TGTAAGTTGTCCAAGATAAA+AGG | - | chr2.3:75292956-75292975 | MS.gene002097:intron | 30.0% | |
| TTATTATTAATCAGGGAAGC+AGG | - | chr2.3:75293248-75293267 | MS.gene002097:CDS | 30.0% | |
| TTCTACCATCAAAACATCAT+AGG | + | chr2.3:75291978-75291997 | None:intergenic | 30.0% | |
| ! | CCTTGTCTAGAATTATCAAT+CGG | + | chr2.3:75291916-75291935 | None:intergenic | 30.0% |
| ! | CCTTTTCCATTTTCTTTCAT+AGG | - | chr2.3:75291861-75291880 | MS.gene002097:intron | 30.0% |
| ! | CGATTGATAATTCTAGACAA+GGG | - | chr2.3:75291914-75291933 | MS.gene002097:CDS | 30.0% |
| ! | CTTTCACTTACCTTTTATCT+TGG | + | chr2.3:75292969-75292988 | None:intergenic | 30.0% |
| ! | GGATTCATGATTTTACATTG+CGG | - | chr2.3:75292284-75292303 | MS.gene002097:CDS | 30.0% |
| !! | ATCTATCTTGGTGTCATTAA+TGG | - | chr2.3:75292106-75292125 | MS.gene002097:intron | 30.0% |
| !!! | GATGTTTTGATGGTAGAATA+GGG | - | chr2.3:75291980-75291999 | MS.gene002097:intron | 30.0% |
| !!! | TCAGAATAACGTTGTTGTTT+TGG | - | chr2.3:75291744-75291763 | MS.gene002097:CDS | 30.0% |
| !!! | TGATGTTTTGATGGTAGAAT+AGG | - | chr2.3:75291979-75291998 | MS.gene002097:intron | 30.0% |
| AAAATGTACCTTGACAGACA+AGG | + | chr2.3:75291812-75291831 | None:intergenic | 35.0% | |
| AAACACATTGTCATTGCATC+TGG | - | chr2.3:75292071-75292090 | MS.gene002097:intron | 35.0% | |
| AATCACGGTTAACACAATTG+TGG | - | chr2.3:75292262-75292281 | MS.gene002097:CDS | 35.0% | |
| ATCACGGTTAACACAATTGT+GGG | - | chr2.3:75292263-75292282 | MS.gene002097:CDS | 35.0% | |
| ATTTGATACGTCTTAAGGAC+AGG | - | chr2.3:75293130-75293149 | MS.gene002097:intron | 35.0% | |
| CATTAATGGCCCAGATTTAA+TGG | - | chr2.3:75292120-75292139 | MS.gene002097:intron | 35.0% | |
| CTTCAATTATAACATGTCGC+GGG | - | chr2.3:75292477-75292496 | MS.gene002097:intron | 35.0% | |
| GAGACATTCGATCGTTAAAT+GGG | - | chr2.3:75292632-75292651 | MS.gene002097:intron | 35.0% | |
| TGAACTTATCGTGAAATGCA+CGG | + | chr2.3:75292170-75292189 | None:intergenic | 35.0% | |
| TGAATCAACAAATGCAAGAG+TGG | - | chr2.3:75293286-75293305 | MS.gene002097:CDS | 35.0% | |
| TGAGACATTCGATCGTTAAA+TGG | - | chr2.3:75292631-75292650 | MS.gene002097:intron | 35.0% | |
| TTAGTGTATGTTTGGATGAG+TGG | - | chr2.3:75292339-75292358 | MS.gene002097:CDS | 35.0% | |
| TTTAACGATCGAATGTCTCA+AGG | + | chr2.3:75292631-75292650 | None:intergenic | 35.0% | |
| TTTGTGTGACCCAGATTTAA+TGG | + | chr2.3:75292054-75292073 | None:intergenic | 35.0% | |
| ! | CCGATTGATAATTCTAGACA+AGG | - | chr2.3:75291913-75291932 | MS.gene002097:CDS | 35.0% |
| ! | TTGATGGTAGAATAGGGTTT+AGG | - | chr2.3:75291986-75292005 | MS.gene002097:intron | 35.0% |
| !! | ACTTTGGTGCCATTAAATCT+GGG | - | chr2.3:75292042-75292061 | MS.gene002097:intron | 35.0% |
| !! | TGTGACCTATGATGTTTTGA+TGG | - | chr2.3:75291970-75291989 | MS.gene002097:intron | 35.0% |
| !! | TTTTAGGTGACATCACCATA+TGG | - | chr2.3:75292664-75292683 | MS.gene002097:intron | 35.0% |
| ACCAAGATAGATGTGTTGTG+TGG | + | chr2.3:75292098-75292117 | None:intergenic | 40.0% | |
| ACCACACAACACATCTATCT+TGG | - | chr2.3:75292094-75292113 | MS.gene002097:intron | 40.0% | |
| ATGGTAGAATAGGGTTTAGG+TGG | - | chr2.3:75291989-75292008 | MS.gene002097:intron | 40.0% | |
| CCTTTACAACTTCAGAGAGT+GGG | - | chr2.3:75292731-75292750 | MS.gene002097:intron | 40.0% | |
| GAACTACATTGCATGCTTCT+GGG | - | chr2.3:75292753-75292772 | MS.gene002097:intron | 40.0% | |
| GAACTTATCGTGAAATGCAC+GGG | + | chr2.3:75292169-75292188 | None:intergenic | 40.0% | |
| TCTCAGCATGTCATGCTATA+TGG | - | chr2.3:75291677-75291696 | MS.gene002097:CDS | 40.0% | |
| TGATAATTCTAGACAAGGGC+TGG | - | chr2.3:75291918-75291937 | MS.gene002097:CDS | 40.0% | |
| TGTCGCGGGAAATAAATTGT+CGG | - | chr2.3:75292491-75292510 | MS.gene002097:intron | 40.0% | |
| ! | CAGTTTCAGTTTTGCAGTTG+TGG | - | chr2.3:75293345-75293364 | MS.gene002097:CDS | 40.0% |
| ! | CATACCGTGCCATTAAATCT+GGG | + | chr2.3:75292132-75292151 | None:intergenic | 40.0% |
| ! | TAGCTTTTGCAAAACCGTTG+TGG | + | chr2.3:75292209-75292228 | None:intergenic | 40.0% |
| !! | CACTTTGGTGCCATTAAATC+TGG | - | chr2.3:75292041-75292060 | MS.gene002097:intron | 40.0% |
| !! | CTTGAGTTGAGAAAGCTAGA+AGG | - | chr2.3:75293084-75293103 | MS.gene002097:intron | 40.0% |
| !! | GGTTGGTTTGATCGATCAAT+CGG | + | chr2.3:75291787-75291806 | None:intergenic | 40.0% |
| AAAGCTAGAAGGATCAGTGG+AGG | - | chr2.3:75293095-75293114 | MS.gene002097:intron | 45.0% | |
| AGCAACTGAATCCCAATCCT+TGG | + | chr2.3:75292842-75292861 | None:intergenic | 45.0% | |
| ATGGCCCAGATTTAATGGCA+CGG | - | chr2.3:75292125-75292144 | MS.gene002097:intron | 45.0% | |
| ATGTACCTTGACAGACAAGG+TGG | + | chr2.3:75291809-75291828 | None:intergenic | 45.0% | |
| CAACAAATGCAAGAGTGGCA+TGG | - | chr2.3:75293291-75293310 | MS.gene002097:CDS | 45.0% | |
| CCAGATTTAATGGCACGGTA+TGG | - | chr2.3:75292130-75292149 | MS.gene002097:intron | 45.0% | |
| GAAAATTGGAGTTGCAGCCA+AGG | - | chr2.3:75292822-75292841 | MS.gene002097:intron | 45.0% | |
| GAGAAAGCTAGAAGGATCAG+TGG | - | chr2.3:75293092-75293111 | MS.gene002097:intron | 45.0% | |
| GCCTTTACAACTTCAGAGAG+TGG | - | chr2.3:75292730-75292749 | MS.gene002097:intron | 45.0% | |
| GGAACTACATTGCATGCTTC+TGG | - | chr2.3:75292752-75292771 | MS.gene002097:intron | 45.0% | |
| TGGATCTCATTACCTGCTTC+AGG | - | chr2.3:75291697-75291716 | MS.gene002097:CDS | 45.0% | |
| TGTACCTTGACAGACAAGGT+GGG | + | chr2.3:75291808-75291827 | None:intergenic | 45.0% | |
| TTCTGGGTTGCTCAGAATCA+TGG | - | chr2.3:75292769-75292788 | MS.gene002097:intron | 45.0% | |
| ! | ACACATTTGGTTCCTGAAGC+AGG | + | chr2.3:75291712-75291731 | None:intergenic | 45.0% |
| ! | CCATACCGTGCCATTAAATC+TGG | + | chr2.3:75292133-75292152 | None:intergenic | 45.0% |
| ! | GTGCGTGTTTGGATTTTCGA+TGG | + | chr2.3:75292399-75292418 | None:intergenic | 45.0% |
| !! | CCCACTCTCTGAAGTTGTAA+AGG | + | chr2.3:75292734-75292753 | None:intergenic | 45.0% |
| !!! | GTTATATATTAATTATTTTT+TGG | - | chr2.3:75293221-75293240 | MS.gene002097:CDS | 5.0% |
| GAAATGCACGGGTAGCACTT+TGG | + | chr2.3:75292158-75292177 | None:intergenic | 50.0% | |
| GTTGCTCAGAATCATGGAGG+TGG | - | chr2.3:75292775-75292794 | MS.gene002097:intron | 50.0% | |
| TAATCAGGGAAGCAGGGATG+AGG | - | chr2.3:75293255-75293274 | MS.gene002097:CDS | 50.0% | |
| TGGAGTTGCAGCCAAGGATT+GGG | - | chr2.3:75292828-75292847 | MS.gene002097:intron | 50.0% | |
| TGGGTTGCTCAGAATCATGG+AGG | - | chr2.3:75292772-75292791 | MS.gene002097:intron | 50.0% | |
| TTGGAGTTGCAGCCAAGGAT+TGG | - | chr2.3:75292827-75292846 | MS.gene002097:intron | 50.0% | |
| ! | GTGCATTTCGGGTAGCACTT+TGG | - | chr2.3:75292026-75292045 | MS.gene002097:intron | 50.0% |
| ! | GTGCTGTGTCGACATTGTGT+GGG | - | chr2.3:75292449-75292468 | MS.gene002097:intron | 50.0% |
| AGAATCGCGACGAGCCACAA+CGG | - | chr2.3:75292192-75292211 | MS.gene002097:CDS | 55.0% | |
| CCAACCCACCTTGTCTGTCA+AGG | - | chr2.3:75291801-75291820 | MS.gene002097:intron | 55.0% | |
| CCTTGACAGACAAGGTGGGT+TGG | + | chr2.3:75291804-75291823 | None:intergenic | 55.0% | |
| ! | GGTGCTGTGTCGACATTGTG+TGG | - | chr2.3:75292448-75292467 | MS.gene002097:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 75291634 | 75293406 | 75291634 | ID=MS.gene002097 |
| chr2.3 | mRNA | 75291634 | 75293406 | 75291634 | ID=MS.gene002097.t1;Parent=MS.gene002097 |
| chr2.3 | exon | 75293218 | 75293406 | 75293218 | ID=MS.gene002097.t1.exon1;Parent=MS.gene002097.t1 |
| chr2.3 | CDS | 75293218 | 75293406 | 75293218 | ID=cds.MS.gene002097.t1;Parent=MS.gene002097.t1 |
| chr2.3 | exon | 75292161 | 75292370 | 75292161 | ID=MS.gene002097.t1.exon2;Parent=MS.gene002097.t1 |
| chr2.3 | CDS | 75292161 | 75292370 | 75292161 | ID=cds.MS.gene002097.t1;Parent=MS.gene002097.t1 |
| chr2.3 | exon | 75291889 | 75291965 | 75291889 | ID=MS.gene002097.t1.exon3;Parent=MS.gene002097.t1 |
| chr2.3 | CDS | 75291889 | 75291965 | 75291889 | ID=cds.MS.gene002097.t1;Parent=MS.gene002097.t1 |
| chr2.3 | exon | 75291634 | 75291778 | 75291634 | ID=MS.gene002097.t1.exon4;Parent=MS.gene002097.t1 |
| chr2.3 | CDS | 75291634 | 75291778 | 75291634 | ID=cds.MS.gene002097.t1;Parent=MS.gene002097.t1 |
| Gene Sequence |
| Protein sequence |
