Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27948.t1 | XP_003629981.1 | 97.2 | 211 | 4 | 1 | 1 | 209 | 1 | 211 | 4.80E-110 | 407.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27948.t1 | Q6IDL4 | 66.2 | 207 | 67 | 2 | 6 | 209 | 11 | 217 | 3.3e-75 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27948.t1 | G7L9I3 | 97.2 | 211 | 4 | 1 | 1 | 209 | 1 | 211 | 3.5e-110 | 407.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27948 | MS.gene072012 | PPI |
| MS.gene27948 | MS.gene67216 | PPI |
| MS.gene27948 | MS.gene56516 | PPI |
| MS.gene002097 | MS.gene27948 | PPI |
| MS.gene27948 | MS.gene96773 | PPI |
| MS.gene27948 | MS.gene045327 | PPI |
| MS.gene75647 | MS.gene27948 | PPI |
| MS.gene27948 | MS.gene006810 | PPI |
| MS.gene77559 | MS.gene27948 | PPI |
| MS.gene047149 | MS.gene27948 | PPI |
| MS.gene27948 | MS.gene030925 | PPI |
| MS.gene27948 | MS.gene031477 | PPI |
| MS.gene27948 | MS.gene47907 | PPI |
| MS.gene79918 | MS.gene27948 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27948.t1 | MTR_8g088940 | 97.156 | 211 | 4 | 1 | 1 | 209 | 1 | 211 | 2.26e-151 | 418 |
| MS.gene27948.t1 | MTR_2g007210 | 71.698 | 212 | 51 | 4 | 1 | 209 | 1 | 206 | 1.37e-107 | 307 |
| MS.gene27948.t1 | MTR_8g088980 | 98.630 | 146 | 2 | 0 | 64 | 209 | 17 | 162 | 1.56e-105 | 301 |
| MS.gene27948.t1 | MTR_3g072600 | 64.929 | 211 | 68 | 2 | 3 | 209 | 9 | 217 | 2.04e-98 | 285 |
| MS.gene27948.t1 | MTR_5g058140 | 69.892 | 186 | 55 | 1 | 24 | 209 | 28 | 212 | 2.76e-93 | 271 |
| MS.gene27948.t1 | MTR_4g082315 | 42.347 | 196 | 102 | 3 | 22 | 209 | 24 | 216 | 3.17e-54 | 172 |
| MS.gene27948.t1 | MTR_6g012770 | 40.206 | 194 | 106 | 2 | 24 | 209 | 21 | 212 | 6.23e-52 | 166 |
| MS.gene27948.t1 | MTR_7g011490 | 39.691 | 194 | 106 | 3 | 24 | 209 | 22 | 212 | 6.10e-47 | 154 |
| MS.gene27948.t1 | MTR_5g042260 | 34.906 | 212 | 126 | 4 | 8 | 209 | 10 | 219 | 1.52e-41 | 140 |
| MS.gene27948.t1 | MTR_5g042270 | 34.091 | 176 | 114 | 2 | 35 | 209 | 11 | 185 | 2.30e-32 | 115 |
| MS.gene27948.t1 | MTR_5g042320 | 32.864 | 213 | 130 | 5 | 8 | 209 | 13 | 223 | 1.02e-31 | 115 |
| MS.gene27948.t1 | MTR_5g042320 | 30.233 | 172 | 107 | 5 | 8 | 168 | 13 | 182 | 2.18e-18 | 79.7 |
| MS.gene27948.t1 | MTR_7g095690 | 25.980 | 204 | 136 | 5 | 11 | 205 | 7 | 204 | 2.41e-13 | 66.6 |
| MS.gene27948.t1 | MTR_5g042300 | 31.707 | 123 | 69 | 3 | 87 | 209 | 41 | 148 | 4.24e-13 | 64.7 |
| MS.gene27948.t1 | MTR_1g102720 | 26.946 | 167 | 116 | 3 | 39 | 205 | 46 | 206 | 2.42e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27948.t1 | AT1G09580 | 66.184 | 207 | 67 | 2 | 6 | 209 | 11 | 217 | 5.45e-103 | 296 |
| MS.gene27948.t1 | AT1G57620 | 64.762 | 210 | 72 | 1 | 2 | 209 | 3 | 212 | 6.00e-101 | 291 |
| MS.gene27948.t1 | AT1G21900 | 70.157 | 191 | 51 | 3 | 24 | 209 | 27 | 216 | 3.85e-92 | 269 |
| MS.gene27948.t1 | AT3G10780 | 54.500 | 200 | 83 | 4 | 17 | 209 | 19 | 217 | 1.51e-66 | 204 |
| MS.gene27948.t1 | AT1G14010 | 42.381 | 210 | 111 | 5 | 7 | 209 | 6 | 212 | 1.77e-51 | 165 |
| MS.gene27948.t1 | AT1G26690 | 39.713 | 209 | 113 | 5 | 8 | 209 | 12 | 214 | 3.34e-51 | 165 |
| MS.gene27948.t1 | AT1G69460 | 37.788 | 217 | 118 | 5 | 2 | 209 | 6 | 214 | 5.39e-47 | 154 |
| MS.gene27948.t1 | AT2G03290 | 38.000 | 200 | 110 | 4 | 20 | 209 | 18 | 213 | 2.75e-46 | 152 |
| MS.gene27948.t1 | AT3G29070 | 38.542 | 192 | 111 | 4 | 24 | 209 | 35 | 225 | 1.03e-43 | 146 |
| MS.gene27948.t1 | AT2G03040 | 34.437 | 151 | 89 | 4 | 20 | 162 | 18 | 166 | 1.39e-26 | 100 |
Find 51 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAACGACGACGTTATTC+TGG | 0.202384 | 4.4:+12123352 | None:intergenic |
| GGAACTACCTGGCATGCTTT+TGG | 0.252996 | 4.4:-12122276 | MS.gene27948:CDS |
| CCAGAATAACGTCGTCGTTT+TGG | 0.269487 | 4.4:-12123352 | MS.gene27948:CDS |
| GTGAACCTTGACTGGAAAAT+TGG | 0.288089 | 4.4:-12122217 | MS.gene27948:CDS |
| TACCTTCCACACTCGCTATC+TGG | 0.307658 | 4.4:-12123419 | MS.gene27948:CDS |
| TTGGAATTGCAGCCAAGGAT+TGG | 0.404517 | 4.4:-12122198 | MS.gene27948:CDS |
| GATTTCTTCGGAGACGCATT+TGG | 0.406641 | 4.4:+12123374 | None:intergenic |
| TGGAATTGCAGCCAAGGATT+GGG | 0.419986 | 4.4:-12122197 | MS.gene27948:CDS |
| CTTGAGCTGAGAAAGCTAGA+AGG | 0.424644 | 4.4:-12120972 | MS.gene27948:CDS |
| GACGCATTTGGTACCGGTGG+TGG | 0.436098 | 4.4:+12123386 | None:intergenic |
| TTCGGAGACGCATTTGGTAC+CGG | 0.451076 | 4.4:+12123380 | None:intergenic |
| TGGTTTAGTATTATGTCGTT+AGG | 0.458318 | 4.4:-12120749 | MS.gene27948:CDS |
| CTTTAGGTAACATCACCATA+TGG | 0.460528 | 4.4:-12122364 | MS.gene27948:intron |
| TTGGGACTCTGTTGCTAAGA+AGG | 0.460678 | 4.4:-12122179 | MS.gene27948:CDS |
| AGGTTAGTGTGAACCTTGAC+TGG | 0.462981 | 4.4:-12122225 | MS.gene27948:CDS |
| GACGTTATTCTGGATTTCTT+CGG | 0.476995 | 4.4:+12123362 | None:intergenic |
| GGACTGCGGGTATGATCATC+GGG | 0.487606 | 4.4:+12123312 | None:intergenic |
| TGATGAAGATTGTTTCCATA+TGG | 0.488589 | 4.4:+12122349 | None:intergenic |
| AGCAACAGAGTCCCAATCCT+TGG | 0.491478 | 4.4:+12122186 | None:intergenic |
| GCATTTACGACTCAAGAGAC+TGG | 0.507558 | 4.4:-12122298 | MS.gene27948:CDS |
| CATTGCCTTGACAGCGAGAG+TGG | 0.515621 | 4.4:+12123290 | None:intergenic |
| CATCTACCCAAAAGCATGCC+AGG | 0.519642 | 4.4:+12122269 | None:intergenic |
| TGAGAATTTGCTCTATCTGA+AGG | 0.520005 | 4.4:-12120931 | MS.gene27948:CDS |
| GAGTTTCAGCTTTACAATTG+TGG | 0.527308 | 4.4:-12120715 | MS.gene27948:CDS |
| AAAGCTAGAAGGAGCTGTAG+AGG | 0.537093 | 4.4:-12120961 | MS.gene27948:CDS |
| GGGACTGCGGGTATGATCAT+CGG | 0.537965 | 4.4:+12123311 | None:intergenic |
| AGCCAGATAGCGAGTGTGGA+AGG | 0.543450 | 4.4:+12123417 | None:intergenic |
| CACAAAGAGAATACAACACA+TGG | 0.546181 | 4.4:-12122328 | MS.gene27948:CDS |
| TCAGATAGAGCAAATTCTCA+TGG | 0.549018 | 4.4:+12120934 | None:intergenic |
| GACAGCGAGAGTGGGACTGC+GGG | 0.552072 | 4.4:+12123299 | None:intergenic |
| GAAAATTGGAATTGCAGCCA+AGG | 0.558923 | 4.4:-12122203 | MS.gene27948:CDS |
| CGTAAGCCAGATAGCGAGTG+TGG | 0.559231 | 4.4:+12123413 | None:intergenic |
| GATTGATTGAGAAGATGCAG+AGG | 0.562203 | 4.4:+12123445 | None:intergenic |
| ATTTGCTCTATCTGAAGGGA+AGG | 0.563345 | 4.4:-12120926 | MS.gene27948:intron |
| TCAAGAGACTGGGAACTACC+TGG | 0.566601 | 4.4:-12122287 | MS.gene27948:CDS |
| CATTTACGACTCAAGAGACT+GGG | 0.567095 | 4.4:-12122297 | MS.gene27948:CDS |
| ATAGAGCAAATTCTCATGGA+TGG | 0.574638 | 4.4:+12120938 | None:intergenic |
| ACGCATTTGGTACCGGTGGT+GGG | 0.588544 | 4.4:+12123387 | None:intergenic |
| TGGCTTACGTTACCCACCAC+CGG | 0.590818 | 4.4:-12123399 | MS.gene27948:CDS |
| TGCTAAGAAGGAGAAGATTG+AGG | 0.592200 | 4.4:-12122167 | MS.gene27948:intron |
| GAGAATTTGCTCTATCTGAA+GGG | 0.598320 | 4.4:-12120930 | MS.gene27948:CDS |
| ATCGTGAGTGAAAGAACGAA+TGG | 0.605321 | 4.4:-12120782 | MS.gene27948:CDS |
| TGACAGCGAGAGTGGGACTG+CGG | 0.610073 | 4.4:+12123298 | None:intergenic |
| GAACGAATGGCAGAGTGGCA+TGG | 0.612930 | 4.4:-12120769 | MS.gene27948:CDS |
| TGTTCAGGGAAGCAGAGATG+AGG | 0.614511 | 4.4:-12120805 | MS.gene27948:intron |
| ATGTCGTTAGGTATCTGCAT+TGG | 0.618449 | 4.4:-12120737 | MS.gene27948:CDS |
| ATTGCCTTGACAGCGAGAGT+GGG | 0.637048 | 4.4:+12123291 | None:intergenic |
| GGAGACGCATTTGGTACCGG+TGG | 0.661357 | 4.4:+12123383 | None:intergenic |
| GGGTAATCAAGGAGGTCACG+AGG | 0.668890 | 4.4:-12122245 | MS.gene27948:CDS |
| TGAAAGAACGAATGGCAGAG+TGG | 0.690016 | 4.4:-12120774 | MS.gene27948:CDS |
| ACAAAGAGAATACAACACAT+GGG | 0.710335 | 4.4:-12122327 | MS.gene27948:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAATTTAAGAGTTTA+AGG | - | chr4.4:12122708-12122727 | MS.gene27948:intron | 10.0% |
| !!! | ATAAGTAATTTTTTTTTGTA+GGG | - | chr4.4:12122769-12122788 | MS.gene27948:intron | 10.0% |
| !!! | TATAAGTAATTTTTTTTTGT+AGG | - | chr4.4:12122768-12122787 | MS.gene27948:intron | 10.0% |
| !!! | TTTTTTTTTGCATTATAAAA+TGG | - | chr4.4:12122149-12122168 | MS.gene27948:intron | 10.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr4.4:12122798-12122817 | MS.gene27948:intron | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | chr4.4:12122458-12122477 | None:intergenic | 15.0% |
| !! | AATGCAAAAAAAAATCTTTA+AGG | + | chr4.4:12122143-12122162 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr4.4:12122386-12122405 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | + | chr4.4:12122577-12122596 | None:intergenic | 15.0% |
| !! | TATTAAAAAAAATGTATAGC+AGG | + | chr4.4:12122887-12122906 | None:intergenic | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | + | chr4.4:12122542-12122561 | None:intergenic | 15.0% |
| !!! | ATCATTTAAAATAAGCAATT+AGG | + | chr4.4:12121213-12121232 | None:intergenic | 15.0% |
| !!! | ATTATAAAATGGAATCTTTT+AGG | - | chr4.4:12122160-12122179 | MS.gene27948:intron | 15.0% |
| !! | AAACAAAATTTACTTTAGCA+GGG | - | chr4.4:12122737-12122756 | MS.gene27948:intron | 20.0% |
| !! | ATTTAGGGATAATATAATCT+AGG | - | chr4.4:12122311-12122330 | MS.gene27948:CDS | 20.0% |
| !! | GGTATAGATTTAAATAGATA+TGG | + | chr4.4:12123078-12123097 | None:intergenic | 20.0% |
| !! | TAAACAAAATTTACTTTAGC+AGG | - | chr4.4:12122736-12122755 | MS.gene27948:intron | 20.0% |
| !! | TTGGAAAATATCTCTATTTA+GGG | - | chr4.4:12122296-12122315 | MS.gene27948:CDS | 20.0% |
| !! | TTTAGGGATAATATAATCTA+GGG | - | chr4.4:12122312-12122331 | MS.gene27948:CDS | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | - | chr4.4:12122488-12122507 | MS.gene27948:intron | 20.0% |
| !!! | TATAGGGTTAAATATGTTTT+TGG | + | chr4.4:12122856-12122875 | None:intergenic | 20.0% |
| !!! | TTACTTGTAATGTTTTCTTT+AGG | - | chr4.4:12121770-12121789 | MS.gene27948:intron | 20.0% |
| !!! | TTCAATTTTGATCATTTGAT+GGG | - | chr4.4:12121022-12121041 | MS.gene27948:intron | 20.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | chr4.4:12122447-12122466 | None:intergenic | 25.0% |
| ! | ACAGAGTAAAGTTCAATTTA+TGG | + | chr4.4:12121428-12121447 | None:intergenic | 25.0% |
| ! | ATAGCAGGAAATAGATTATA+GGG | + | chr4.4:12122872-12122891 | None:intergenic | 25.0% |
| ! | CCACGAAATTAAAATGAAAA+GGG | + | chr4.4:12120907-12120926 | None:intergenic | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | - | chr4.4:12122512-12122531 | MS.gene27948:intron | 25.0% |
| ! | GTTGATCAACAAAAGAAATT+AGG | + | chr4.4:12121254-12121273 | None:intergenic | 25.0% |
| ! | GTTGGAAAATATCTCTATTT+AGG | - | chr4.4:12122295-12122314 | MS.gene27948:CDS | 25.0% |
| ! | TATAGCAGGAAATAGATTAT+AGG | + | chr4.4:12122873-12122892 | None:intergenic | 25.0% |
| ! | TCTTGTGTAACATTAAAGTA+AGG | - | chr4.4:12123044-12123063 | MS.gene27948:intron | 25.0% |
| ! | TTAGAAAATCTCTTACACAT+TGG | - | chr4.4:12121580-12121599 | MS.gene27948:intron | 25.0% |
| ! | TTCAAATGAAAATGTCATAG+TGG | - | chr4.4:12121702-12121721 | MS.gene27948:intron | 25.0% |
| !! | AAGAGATTTTCTAATTTCCA+TGG | + | chr4.4:12121574-12121593 | None:intergenic | 25.0% |
| !! | ATTAATCTTTTGCGACTTTT+TGG | - | chr4.4:12123279-12123298 | MS.gene27948:intron | 25.0% |
| !! | TAGAAAGTCGCAATTTTATA+GGG | - | chr4.4:12122829-12122848 | MS.gene27948:intron | 25.0% |
| !! | TTAGAAAGTCGCAATTTTAT+AGG | - | chr4.4:12122828-12122847 | MS.gene27948:intron | 25.0% |
| !!! | ATTTGTTGATGATCACAAAA+TGG | - | chr4.4:12121162-12121181 | MS.gene27948:intron | 25.0% |
| !!! | CCTTTTCATTTTAATTTCGT+GGG | - | chr4.4:12120905-12120924 | MS.gene27948:intron | 25.0% |
| !!! | CTGATAACAGTTTGTTAAAA+TGG | - | chr4.4:12121743-12121762 | MS.gene27948:intron | 25.0% |
| !!! | CTTCAATTTTGATCATTTGA+TGG | - | chr4.4:12121021-12121040 | MS.gene27948:intron | 25.0% |
| !!! | GTTCTTTTGATTGTAGAAAA+TGG | - | chr4.4:12121501-12121520 | MS.gene27948:intron | 25.0% |
| !!! | TCTAGGGTTAATTATGTTTT+TGG | - | chr4.4:12122328-12122347 | MS.gene27948:CDS | 25.0% |
| !!! | TGATTTGTTGAATAATGCAT+TGG | - | chr4.4:12121046-12121065 | MS.gene27948:intron | 25.0% |
| AACCAAACAAATCAGAACAA+TGG | + | chr4.4:12120972-12120991 | None:intergenic | 30.0% | |
| AAGATTGAGGTAAGTAGATA+TGG | - | chr4.4:12121996-12122015 | MS.gene27948:intron | 30.0% | |
| AAGTAAGGACTAAACTTAGA+AGG | + | chr4.4:12122832-12122813 | None:intergenic | 30.0% | |
| ACAAAGAGAATACAACACAT+GGG | - | chr4.4:12121823-12121842 | MS.gene27948:intron | 30.0% | |
| AGCTGACAATTAATTACTCA+AGG | - | chr4.4:12122041-12122060 | MS.gene27948:intron | 30.0% | |
| AGGATCTTCTTACTATATGT+TGG | - | chr4.4:12122277-12122296 | MS.gene27948:CDS | 30.0% | |
| ATAGCTCACTAAATTTCTTG+AGG | + | chr4.4:12122984-12123003 | None:intergenic | 30.0% | |
| ATATATCGTTCACATACATG+TGG | - | chr4.4:12121536-12121555 | MS.gene27948:intron | 30.0% | |
| ATGAAAGTGATTCATGACTT+AGG | + | chr4.4:12121676-12121695 | None:intergenic | 30.0% | |
| ATGAATAATTGATTGTGCTG+AGG | - | chr4.4:12122954-12122973 | MS.gene27948:intron | 30.0% | |
| CCCACGAAATTAAAATGAAA+AGG | + | chr4.4:12120908-12120927 | None:intergenic | 30.0% | |
| CTATATGTGATTGATACCTA+GGG | - | chr4.4:12123148-12123167 | MS.gene27948:intron | 30.0% | |
| GTACTCGACATAAATAATGA+AGG | - | chr4.4:12122257-12122276 | MS.gene27948:CDS | 30.0% | |
| TAATGTTACACAAGAGAGAA+TGG | + | chr4.4:12123039-12123058 | None:intergenic | 30.0% | |
| TCTATATGTGATTGATACCT+AGG | - | chr4.4:12123147-12123166 | MS.gene27948:intron | 30.0% | |
| TGATGAAGATTGTTTCCATA+TGG | + | chr4.4:12121804-12121823 | None:intergenic | 30.0% | |
| TGGTTTAGTATTATGTCGTT+AGG | - | chr4.4:12123401-12123420 | MS.gene27948:CDS | 30.0% | |
| TTTCATCTCTAATACCAGTA+TGG | + | chr4.4:12122219-12122238 | None:intergenic | 30.0% | |
| ! | TGTTGATCAACAATTTTCTG+TGG | - | chr4.4:12121263-12121282 | MS.gene27948:intron | 30.0% |
| !! | TCTGATTTGTTTGGTTTCTA+GGG | - | chr4.4:12120976-12120995 | MS.gene27948:CDS | 30.0% |
| !! | TTCCATTGTTCTGATTTGTT+TGG | - | chr4.4:12120967-12120986 | MS.gene27948:CDS | 30.0% |
| !! | TTCTGATTTGTTTGGTTTCT+AGG | - | chr4.4:12120975-12120994 | MS.gene27948:CDS | 30.0% |
| !!! | ATATTTTGTGCTGTTTGTTC+AGG | - | chr4.4:12123330-12123349 | MS.gene27948:CDS | 30.0% |
| !!! | CCCTTTTCATTTTAATTTCG+TGG | - | chr4.4:12120904-12120923 | MS.gene27948:intron | 30.0% |
| !!! | CGAAAAGCATTTTTAAACAG+TGG | + | chr4.4:12122097-12122116 | None:intergenic | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | + | chr4.4:12122415-12122434 | None:intergenic | 30.0% |
| !!! | TATTTTGTGCTGTTTGTTCA+GGG | - | chr4.4:12123331-12123350 | MS.gene27948:CDS | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | + | chr4.4:12122416-12122435 | None:intergenic | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | + | chr4.4:12122539-12122558 | None:intergenic | 30.0% |
| AAGTAACTAAAGTCTCGAGA+TGG | + | chr4.4:12123011-12123030 | None:intergenic | 35.0% | |
| ATAGAGCAAATTCTCATGGA+TGG | + | chr4.4:12123215-12123234 | None:intergenic | 35.0% | |
| CACAAAGAGAATACAACACA+TGG | - | chr4.4:12121822-12121841 | MS.gene27948:intron | 35.0% | |
| CAGTATGGAAGAATCCAAAT+CGG | + | chr4.4:12122204-12122223 | None:intergenic | 35.0% | |
| CTAGAAATTGTTGACGTGAT+TGG | + | chr4.4:12123258-12123277 | None:intergenic | 35.0% | |
| CTTTAGGTAACATCACCATA+TGG | - | chr4.4:12121786-12121805 | MS.gene27948:intron | 35.0% | |
| GACGTTATTCTGGATTTCTT+CGG | + | chr4.4:12120791-12120810 | None:intergenic | 35.0% | |
| GAGTTTCAGCTTTACAATTG+TGG | - | chr4.4:12123435-12123454 | MS.gene27948:CDS | 35.0% | |
| GTCAAACTACTATAACACGA+CGG | + | chr4.4:12121303-12121322 | None:intergenic | 35.0% | |
| GTGAGAAAATTGATCCGATT+TGG | - | chr4.4:12122187-12122206 | MS.gene27948:CDS | 35.0% | |
| TATACCTCTTCTGTTTGCTT+TGG | - | chr4.4:12123092-12123111 | MS.gene27948:intron | 35.0% | |
| TATTCCAAAGCAAACAGAAG+AGG | + | chr4.4:12123099-12123118 | None:intergenic | 35.0% | |
| TCAGATAGAGCAAATTCTCA+TGG | + | chr4.4:12123219-12123238 | None:intergenic | 35.0% | |
| ! | CAAGTTTAGAACACTACGAA+AGG | + | chr4.4:12122674-12122693 | None:intergenic | 35.0% |
| ! | CAATTCCAATTTTCCAGTCA+AGG | + | chr4.4:12121941-12121960 | None:intergenic | 35.0% |
| ! | GAGAATTTGCTCTATCTGAA+GGG | - | chr4.4:12123220-12123239 | MS.gene27948:intron | 35.0% |
| ! | TAGAAGGTCGCAATTTTGTA+GGG | + | chr4.4:12122355-12122374 | None:intergenic | 35.0% |
| ! | TGAGAATTTGCTCTATCTGA+AGG | - | chr4.4:12123219-12123238 | MS.gene27948:intron | 35.0% |
| ! | TGTCGAGTTCAATCTTTTGA+GGG | - | chr4.4:12121457-12121476 | MS.gene27948:intron | 35.0% |
| ! | TTAGAAGGTCGCAATTTTGT+AGG | + | chr4.4:12122356-12122375 | None:intergenic | 35.0% |
| ATCGTGAGTGAAAGAACGAA+TGG | - | chr4.4:12123368-12123387 | MS.gene27948:CDS | 40.0% | |
| ATGTCGTTAGGTATCTGCAT+TGG | - | chr4.4:12123413-12123432 | MS.gene27948:CDS | 40.0% | |
| ATTTGCTCTATCTGAAGGGA+AGG | - | chr4.4:12123224-12123243 | MS.gene27948:intron | 40.0% | |
| CATTTACGACTCAAGAGACT+GGG | - | chr4.4:12121853-12121872 | MS.gene27948:intron | 40.0% | |
| GAAAATTGGAATTGCAGCCA+AGG | - | chr4.4:12121947-12121966 | MS.gene27948:intron | 40.0% | |
| GATTGATTGAGAAGATGCAG+AGG | + | chr4.4:12120708-12120727 | None:intergenic | 40.0% | |
| GTGAACCTTGACTGGAAAAT+TGG | - | chr4.4:12121933-12121952 | MS.gene27948:intron | 40.0% | |
| TGCTAAGAAGGAGAAGATTG+AGG | - | chr4.4:12121983-12122002 | MS.gene27948:intron | 40.0% | |
| TGTGGATTCGATTTAGTCCA+TGG | - | chr4.4:12121554-12121573 | MS.gene27948:intron | 40.0% | |
| ! | CGATTTGGATTCTTCCATAC+TGG | - | chr4.4:12122202-12122221 | MS.gene27948:CDS | 40.0% |
| ! | CTGTCGAGTTCAATCTTTTG+AGG | - | chr4.4:12121456-12121475 | MS.gene27948:intron | 40.0% |
| ! | GTCGAGTTCAATCTTTTGAG+GGG | - | chr4.4:12121458-12121477 | MS.gene27948:intron | 40.0% |
| !! | GAGGTGTTTTCGTACGAAAA+TGG | - | chr4.4:12121630-12121649 | MS.gene27948:intron | 40.0% |
| AAAGCTAGAAGGAGCTGTAG+AGG | - | chr4.4:12123189-12123208 | MS.gene27948:intron | 45.0% | |
| AGGTTAGTGTGAACCTTGAC+TGG | - | chr4.4:12121925-12121944 | MS.gene27948:intron | 45.0% | |
| CCAAAACGACGACGTTATTC+TGG | + | chr4.4:12120801-12120820 | None:intergenic | 45.0% | |
| CTTGAGCTGAGAAAGCTAGA+AGG | - | chr4.4:12123178-12123197 | MS.gene27948:intron | 45.0% | |
| GAAAACACCTCAGCACACAA+AGG | + | chr4.4:12121621-12121640 | None:intergenic | 45.0% | |
| GATTTCTTCGGAGACGCATT+TGG | + | chr4.4:12120779-12120798 | None:intergenic | 45.0% | |
| GCAATATCCTTTGTGTGCTG+AGG | - | chr4.4:12121611-12121630 | MS.gene27948:intron | 45.0% | |
| GCATTTACGACTCAAGAGAC+TGG | - | chr4.4:12121852-12121871 | MS.gene27948:intron | 45.0% | |
| TGAAAGAACGAATGGCAGAG+TGG | - | chr4.4:12123376-12123395 | MS.gene27948:CDS | 45.0% | |
| TGGAATTGCAGCCAAGGATT+GGG | - | chr4.4:12121953-12121972 | MS.gene27948:intron | 45.0% | |
| TTGGAATTGCAGCCAAGGAT+TGG | - | chr4.4:12121952-12121971 | MS.gene27948:intron | 45.0% | |
| TTGGGACTCTGTTGCTAAGA+AGG | - | chr4.4:12121971-12121990 | MS.gene27948:intron | 45.0% | |
| ! | CCAGAATAACGTCGTCGTTT+TGG | - | chr4.4:12120798-12120817 | MS.gene27948:CDS | 45.0% |
| ! | GAACTACCTGGCATGCTTTT+GGG | - | chr4.4:12121875-12121894 | MS.gene27948:intron | 45.0% |
| !! | TGGCATGCTTTTGGGTAGAT+GGG | - | chr4.4:12121883-12121902 | MS.gene27948:intron | 45.0% |
| !! | TATTAATATAATAACAAAAT+AGG | + | chr4.4:12121325-12121344 | None:intergenic | 5.0% |
| AGATCAAACCTACGCTGCTC+AGG | + | chr4.4:12121389-12121408 | None:intergenic | 50.0% | |
| AGCAACAGAGTCCCAATCCT+TGG | + | chr4.4:12121967-12121986 | None:intergenic | 50.0% | |
| ATTGCCTTGACAGCGAGAGT+GGG | + | chr4.4:12120862-12120881 | None:intergenic | 50.0% | |
| GTAGATGGGGGTAATCAAGG+AGG | - | chr4.4:12121897-12121916 | MS.gene27948:intron | 50.0% | |
| TACCTTCCACACTCGCTATC+TGG | - | chr4.4:12120731-12120750 | MS.gene27948:CDS | 50.0% | |
| TCAAGAGACTGGGAACTACC+TGG | - | chr4.4:12121863-12121882 | MS.gene27948:intron | 50.0% | |
| TGGGTAGATGGGGGTAATCA+AGG | - | chr4.4:12121894-12121913 | MS.gene27948:intron | 50.0% | |
| TGTTCAGGGAAGCAGAGATG+AGG | - | chr4.4:12123345-12123364 | MS.gene27948:CDS | 50.0% | |
| TTCGGAGACGCATTTGGTAC+CGG | + | chr4.4:12120773-12120792 | None:intergenic | 50.0% | |
| ! | CATCTACCCAAAAGCATGCC+AGG | + | chr4.4:12121884-12121903 | None:intergenic | 50.0% |
| ! | GGAACTACCTGGCATGCTTT+TGG | - | chr4.4:12121874-12121893 | MS.gene27948:intron | 50.0% |
| !! | CTGGCATGCTTTTGGGTAGA+TGG | - | chr4.4:12121882-12121901 | MS.gene27948:intron | 50.0% |
| !! | GCATGCTTTTGGGTAGATGG+GGG | - | chr4.4:12121885-12121904 | MS.gene27948:intron | 50.0% |
| !! | GGCATGCTTTTGGGTAGATG+GGG | - | chr4.4:12121884-12121903 | MS.gene27948:intron | 50.0% |
| !!! | TTTTGAAGCCTGAGCAGCGT+AGG | - | chr4.4:12121378-12121397 | MS.gene27948:intron | 50.0% |
| AGCCAGATAGCGAGTGTGGA+AGG | + | chr4.4:12120736-12120755 | None:intergenic | 55.0% | |
| CAGCTCAAGCTCAACTCCCT+AGG | + | chr4.4:12123167-12123186 | None:intergenic | 55.0% | |
| CATTGCCTTGACAGCGAGAG+TGG | + | chr4.4:12120863-12120882 | None:intergenic | 55.0% | |
| CGTAAGCCAGATAGCGAGTG+TGG | + | chr4.4:12120740-12120759 | None:intergenic | 55.0% | |
| GAACGAATGGCAGAGTGGCA+TGG | - | chr4.4:12123381-12123400 | MS.gene27948:CDS | 55.0% | |
| GGACTGCGGGTATGATCATC+GGG | + | chr4.4:12120841-12120860 | None:intergenic | 55.0% | |
| GGGACTGCGGGTATGATCAT+CGG | + | chr4.4:12120842-12120861 | None:intergenic | 55.0% | |
| GGGTAATCAAGGAGGTCACG+AGG | - | chr4.4:12121905-12121924 | MS.gene27948:intron | 55.0% | |
| TGGCTTACGTTACCCACCAC+CGG | - | chr4.4:12120751-12120770 | MS.gene27948:CDS | 55.0% | |
| !! | ACGCATTTGGTACCGGTGGT+GGG | + | chr4.4:12120766-12120785 | None:intergenic | 55.0% |
| CAGTCCCACTCTCGCTGTCA+AGG | - | chr4.4:12120855-12120874 | MS.gene27948:intron | 60.0% | |
| TGACAGCGAGAGTGGGACTG+CGG | + | chr4.4:12120855-12120874 | None:intergenic | 60.0% | |
| ! | GGAGACGCATTTGGTACCGG+TGG | + | chr4.4:12120770-12120789 | None:intergenic | 60.0% |
| !! | GACGCATTTGGTACCGGTGG+TGG | + | chr4.4:12120767-12120786 | None:intergenic | 60.0% |
| GACAGCGAGAGTGGGACTGC+GGG | + | chr4.4:12120854-12120873 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12120676 | 12123496 | 12120676 | ID=MS.gene27948 |
| chr4.4 | mRNA | 12120676 | 12123496 | 12120676 | ID=MS.gene27948.t1;Parent=MS.gene27948 |
| chr4.4 | exon | 12123302 | 12123496 | 12123302 | ID=MS.gene27948.t1.exon1;Parent=MS.gene27948.t1 |
| chr4.4 | CDS | 12123302 | 12123496 | 12123302 | ID=cds.MS.gene27948.t1;Parent=MS.gene27948.t1 |
| chr4.4 | exon | 12122168 | 12122380 | 12122168 | ID=MS.gene27948.t1.exon2;Parent=MS.gene27948.t1 |
| chr4.4 | CDS | 12122168 | 12122380 | 12122168 | ID=cds.MS.gene27948.t1;Parent=MS.gene27948.t1 |
| chr4.4 | exon | 12120927 | 12121003 | 12120927 | ID=MS.gene27948.t1.exon3;Parent=MS.gene27948.t1 |
| chr4.4 | CDS | 12120927 | 12121003 | 12120927 | ID=cds.MS.gene27948.t1;Parent=MS.gene27948.t1 |
| chr4.4 | exon | 12120676 | 12120820 | 12120676 | ID=MS.gene27948.t1.exon4;Parent=MS.gene27948.t1 |
| chr4.4 | CDS | 12120676 | 12120820 | 12120676 | ID=cds.MS.gene27948.t1;Parent=MS.gene27948.t1 |
| Gene Sequence |
| Protein sequence |
