Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030925.t1 | XP_003629981.1 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.40E-112 | 415.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030925.t1 | Q6IDL4 | 67.1 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 7.1e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030925.t1 | G7L9I3 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 9.8e-113 | 415.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79918 | MS.gene030925 | PPI |
| MS.gene030925 | MS.gene072012 | PPI |
| MS.gene047149 | MS.gene030925 | PPI |
| MS.gene030925 | MS.gene56516 | PPI |
| MS.gene045327 | MS.gene030925 | PPI |
| MS.gene67216 | MS.gene030925 | PPI |
| MS.gene006810 | MS.gene030925 | PPI |
| MS.gene002097 | MS.gene030925 | PPI |
| MS.gene47907 | MS.gene030925 | PPI |
| MS.gene75647 | MS.gene030925 | PPI |
| MS.gene77559 | MS.gene030925 | PPI |
| MS.gene031477 | MS.gene030925 | PPI |
| MS.gene27948 | MS.gene030925 | PPI |
| MS.gene96773 | MS.gene030925 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030925.t1 | MTR_8g088940 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.33e-154 | 427 |
| MS.gene030925.t1 | MTR_2g007210 | 72.642 | 212 | 51 | 3 | 1 | 211 | 1 | 206 | 6.70e-111 | 316 |
| MS.gene030925.t1 | MTR_8g088980 | 92.994 | 157 | 11 | 0 | 55 | 211 | 6 | 162 | 4.01e-106 | 302 |
| MS.gene030925.t1 | MTR_3g072600 | 65.877 | 211 | 68 | 2 | 3 | 211 | 9 | 217 | 1.02e-100 | 291 |
| MS.gene030925.t1 | MTR_5g058140 | 70.213 | 188 | 53 | 2 | 24 | 211 | 28 | 212 | 2.89e-93 | 271 |
| MS.gene030925.t1 | MTR_4g082315 | 41.919 | 198 | 102 | 3 | 22 | 211 | 24 | 216 | 7.51e-55 | 174 |
| MS.gene030925.t1 | MTR_6g012770 | 40.306 | 196 | 105 | 2 | 24 | 211 | 21 | 212 | 6.75e-53 | 169 |
| MS.gene030925.t1 | MTR_7g011490 | 39.796 | 196 | 105 | 3 | 24 | 211 | 22 | 212 | 5.82e-48 | 156 |
| MS.gene030925.t1 | MTR_5g042260 | 34.579 | 214 | 126 | 4 | 8 | 211 | 10 | 219 | 2.70e-42 | 142 |
| MS.gene030925.t1 | MTR_5g042270 | 34.831 | 178 | 112 | 3 | 35 | 211 | 11 | 185 | 2.26e-32 | 115 |
| MS.gene030925.t1 | MTR_5g042320 | 33.023 | 215 | 129 | 5 | 8 | 211 | 13 | 223 | 3.00e-31 | 114 |
| MS.gene030925.t1 | MTR_5g042320 | 30.460 | 174 | 106 | 5 | 8 | 170 | 13 | 182 | 6.98e-18 | 78.6 |
| MS.gene030925.t1 | MTR_7g095690 | 26.214 | 206 | 135 | 5 | 11 | 207 | 7 | 204 | 1.92e-14 | 69.7 |
| MS.gene030925.t1 | MTR_1g102720 | 26.486 | 185 | 127 | 4 | 27 | 207 | 27 | 206 | 2.06e-13 | 66.6 |
| MS.gene030925.t1 | MTR_5g042300 | 31.707 | 123 | 69 | 3 | 89 | 211 | 41 | 148 | 4.59e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030925.t1 | AT1G09580 | 67.150 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 2.05e-106 | 305 |
| MS.gene030925.t1 | AT1G57620 | 65.714 | 210 | 72 | 0 | 2 | 211 | 3 | 212 | 3.28e-104 | 299 |
| MS.gene030925.t1 | AT1G21900 | 70.157 | 191 | 53 | 3 | 24 | 211 | 27 | 216 | 2.86e-94 | 274 |
| MS.gene030925.t1 | AT3G10780 | 55.000 | 200 | 84 | 3 | 17 | 211 | 19 | 217 | 2.24e-69 | 211 |
| MS.gene030925.t1 | AT1G14010 | 42.857 | 210 | 112 | 5 | 7 | 211 | 6 | 212 | 2.16e-52 | 168 |
| MS.gene030925.t1 | AT1G26690 | 39.713 | 209 | 115 | 5 | 8 | 211 | 12 | 214 | 2.86e-52 | 167 |
| MS.gene030925.t1 | AT1G69460 | 37.900 | 219 | 117 | 5 | 2 | 211 | 6 | 214 | 2.80e-48 | 157 |
| MS.gene030925.t1 | AT2G03290 | 38.384 | 198 | 114 | 3 | 20 | 211 | 18 | 213 | 8.32e-48 | 156 |
| MS.gene030925.t1 | AT3G29070 | 39.583 | 192 | 111 | 4 | 24 | 211 | 35 | 225 | 1.71e-44 | 148 |
| MS.gene030925.t1 | AT2G03040 | 35.762 | 151 | 89 | 4 | 20 | 164 | 18 | 166 | 4.42e-28 | 104 |
Find 55 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAACGACGACGTTATTC+TGG | 0.202384 | 4.3:+11304261 | None:intergenic |
| GGAACTACCTGGCATGCTTT+TGG | 0.252996 | 4.3:-11303171 | MS.gene030925:CDS |
| CCTATATAAGCTTCTTCTTC+TGG | 0.253533 | 4.3:+11302100 | None:intergenic |
| CCAGAATAACGTCGTCGTTT+TGG | 0.269487 | 4.3:-11304261 | MS.gene030925:CDS |
| GTGAACCTTGACTGGAAAAT+TGG | 0.288089 | 4.3:-11303112 | MS.gene030925:CDS |
| TACCTTCCACACTCGCTATC+TGG | 0.307658 | 4.3:-11304328 | MS.gene030925:CDS |
| TGGTTTAGTATTATGTCTTT+AGG | 0.332504 | 4.3:-11302174 | MS.gene030925:CDS |
| CCAGAAGAAGAAGCTTATAT+AGG | 0.366996 | 4.3:-11302100 | None:intergenic |
| TGAGAATTTGCTCTATTTGA+AGG | 0.372931 | 4.3:-11302362 | MS.gene030925:CDS |
| TTGGAATTGCAGCCAAGGAT+TGG | 0.404517 | 4.3:-11303093 | MS.gene030925:CDS |
| GATTTCTTCGGAGACGCATT+TGG | 0.406641 | 4.3:+11304283 | None:intergenic |
| TGGAATTGCAGCCAAGGATT+GGG | 0.419986 | 4.3:-11303092 | MS.gene030925:CDS |
| GACGCATTTGGTACCGGTGG+TGG | 0.436098 | 4.3:+11304295 | None:intergenic |
| CTTGAATTGAGAAAGCTAGA+AGG | 0.437577 | 4.3:-11302403 | MS.gene030925:CDS |
| TTCGGAGACGCATTTGGTAC+CGG | 0.451076 | 4.3:+11304289 | None:intergenic |
| TTGGGACTCGGTTGCTAAGA+AGG | 0.456822 | 4.3:-11303074 | MS.gene030925:CDS |
| CTTTAGGTAACATCACCATA+TGG | 0.460528 | 4.3:-11303259 | MS.gene030925:intron |
| AGGTTAGTGTGAACCTTGAC+TGG | 0.462981 | 4.3:-11303120 | MS.gene030925:CDS |
| GAGTTTCAGCTTTGCAATTG+TGG | 0.474103 | 4.3:-11302140 | MS.gene030925:CDS |
| GACGTTATTCTGGATTTCTT+CGG | 0.476995 | 4.3:+11304271 | None:intergenic |
| TGATGAAGATTGTTTCCATA+TGG | 0.488589 | 4.3:+11303244 | None:intergenic |
| GGACTACGGGTATGATCATC+GGG | 0.494222 | 4.3:+11304221 | None:intergenic |
| AGCAACCGAGTCCCAATCCT+TGG | 0.499689 | 4.3:+11303081 | None:intergenic |
| TGCAGCCAAGGATTGGGACT+CGG | 0.501839 | 4.3:-11303086 | MS.gene030925:CDS |
| ATTTGCTCTATTTGAAGGGA+AGG | 0.504729 | 4.3:-11302357 | MS.gene030925:intron |
| GCATTTACGACTCAAGAGAC+TGG | 0.507558 | 4.3:-11303193 | MS.gene030925:CDS |
| TGACAGCGAGAGTGGGACTA+CGG | 0.514356 | 4.3:+11304207 | None:intergenic |
| CATCTACCCAAAAGCATGCC+AGG | 0.519642 | 4.3:+11303164 | None:intergenic |
| TCAAATAGAGCAAATTCTCA+TGG | 0.524282 | 4.3:+11302365 | None:intergenic |
| GAGAATTTGCTCTATTTGAA+GGG | 0.524711 | 4.3:-11302361 | MS.gene030925:CDS |
| CATTACCTTGACAGCGAGAG+TGG | 0.529347 | 4.3:+11304199 | None:intergenic |
| ATTGTGAGTGAAAGAACAAA+TGG | 0.529414 | 4.3:-11302207 | MS.gene030925:CDS |
| CACAAAGAGAACACAACACA+TGG | 0.530469 | 4.3:-11303223 | MS.gene030925:CDS |
| AGCCAGATAGCGAGTGTGGA+AGG | 0.543450 | 4.3:+11304326 | None:intergenic |
| AAAGCTAGAAGGAGCAGTAG+AGG | 0.547380 | 4.3:-11302392 | MS.gene030925:CDS |
| GGGACTACGGGTATGATCAT+CGG | 0.549429 | 4.3:+11304220 | None:intergenic |
| ATAGAGCAAATTCTCATGGA+TGG | 0.557245 | 4.3:+11302369 | None:intergenic |
| GAAAATTGGAATTGCAGCCA+AGG | 0.558923 | 4.3:-11303098 | MS.gene030925:CDS |
| CGTAAGCCAGATAGCGAGTG+TGG | 0.559231 | 4.3:+11304322 | None:intergenic |
| GATTGATTGAGAAGATGCAG+AGG | 0.562203 | 4.3:+11304354 | None:intergenic |
| TCAAGAGACTGGGAACTACC+TGG | 0.566601 | 4.3:-11303182 | MS.gene030925:CDS |
| CATTTACGACTCAAGAGACT+GGG | 0.567095 | 4.3:-11303192 | MS.gene030925:CDS |
| GACAGCGAGAGTGGGACTAC+GGG | 0.568049 | 4.3:+11304208 | None:intergenic |
| TAGTCCCACTCTCGCTGTCA+AGG | 0.570992 | 4.3:-11304204 | MS.gene030925:intron |
| ACGCATTTGGTACCGGTGGT+GGG | 0.588544 | 4.3:+11304296 | None:intergenic |
| TGGCTTACGTTACCCACCAC+CGG | 0.590818 | 4.3:-11304308 | MS.gene030925:CDS |
| ATGTCTTTAGGCATCTGCAT+TGG | 0.592711 | 4.3:-11302162 | MS.gene030925:CDS |
| TGCTAAGAAGGAGAAGATTG+AGG | 0.600933 | 4.3:-11303062 | MS.gene030925:intron |
| GAACAAATGGCAGAGTGGCA+TGG | 0.606109 | 4.3:-11302194 | MS.gene030925:CDS |
| TGTTCAGGGAAGCAGAGATG+AGG | 0.607580 | 4.3:-11302230 | MS.gene030925:intron |
| ATTACCTTGACAGCGAGAGT+GGG | 0.651605 | 4.3:+11304200 | None:intergenic |
| GGAGACGCATTTGGTACCGG+TGG | 0.661357 | 4.3:+11304292 | None:intergenic |
| TGAAAGAACAAATGGCAGAG+TGG | 0.668163 | 4.3:-11302199 | MS.gene030925:CDS |
| GGGTAATCAAGGAGGTCACG+AGG | 0.668890 | 4.3:-11303140 | MS.gene030925:CDS |
| ACAAAGAGAACACAACACAT+GGG | 0.726810 | 4.3:-11303222 | MS.gene030925:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATAACATGAAAGTA+AGG | - | chr4.3:11303952-11303971 | MS.gene030925:intron | 15.0% |
| !!! | AGATTTTTTGCATTATAAAA+TGG | - | chr4.3:11303582-11303601 | MS.gene030925:intron | 15.0% |
| !! | AATTGACGTAATTAGTAATA+TGG | - | chr4.3:11302521-11302540 | MS.gene030925:intron | 20.0% |
| !! | ATATAATATGAAATGAGTTC+AGG | - | chr4.3:11303508-11303527 | MS.gene030925:intron | 20.0% |
| !! | ATCCAAAAACAAAACAAAAT+AGG | + | chr4.3:11302779-11302798 | None:intergenic | 20.0% |
| !! | GTATAGATTTAATCTAGATT+TGG | + | chr4.3:11303986-11304005 | None:intergenic | 20.0% |
| !! | TTATAAAATGGAAATCTTCT+AGG | - | chr4.3:11303594-11303613 | MS.gene030925:intron | 20.0% |
| !! | TTGGAAAATATGTCTATTTA+GGG | - | chr4.3:11303748-11303767 | MS.gene030925:intron | 20.0% |
| !! | TTTCATGTTATATATAAGAG+AGG | + | chr4.3:11303949-11303968 | None:intergenic | 20.0% |
| !!! | CATTGTTATATGTCTATTTT+TGG | - | chr4.3:11302823-11302842 | MS.gene030925:intron | 20.0% |
| !!! | CTGATAACAATTTGTTAAAA+TGG | - | chr4.3:11303182-11303201 | MS.gene030925:CDS | 20.0% |
| !!! | TAACTTGTAATGTTTTCTTT+AGG | - | chr4.3:11303209-11303228 | MS.gene030925:CDS | 20.0% |
| ! | ACAGAGTAAAGATCAATTTA+TGG | + | chr4.3:11302890-11302909 | None:intergenic | 25.0% |
| ! | ATAGTTTACTAAATTGCTTG+AGG | + | chr4.3:11303889-11303908 | None:intergenic | 25.0% |
| ! | ATTTAGTTACAGAATCAGAA+GGG | + | chr4.3:11304037-11304056 | None:intergenic | 25.0% |
| ! | CCACGAAATTAAAATGAAAA+GGG | + | chr4.3:11302332-11302351 | None:intergenic | 25.0% |
| ! | GTTGATCAACAAAAGAAATT+AGG | + | chr4.3:11302687-11302706 | None:intergenic | 25.0% |
| ! | GTTGGAAAATATGTCTATTT+AGG | - | chr4.3:11303747-11303766 | MS.gene030925:intron | 25.0% |
| ! | TGGTTTAGTATTATGTCTTT+AGG | - | chr4.3:11304310-11304329 | MS.gene030925:CDS | 25.0% |
| ! | TTCAAATGAAAATGTCATAG+TGG | - | chr4.3:11303141-11303160 | MS.gene030925:CDS | 25.0% |
| ! | TTGGATATATTAATCGATGA+GGG | - | chr4.3:11302793-11302812 | MS.gene030925:intron | 25.0% |
| ! | TTTGGATATATTAATCGATG+AGG | - | chr4.3:11302792-11302811 | MS.gene030925:intron | 25.0% |
| !! | TATTTTGTGTTCTTTGTTCA+GGG | - | chr4.3:11304240-11304259 | MS.gene030925:CDS | 25.0% |
| !!! | ATTTGTTGATGATCACAAAA+TGG | - | chr4.3:11302595-11302614 | MS.gene030925:intron | 25.0% |
| !!! | CCTTTTCATTTTAATTTCGT+GGG | - | chr4.3:11302330-11302349 | MS.gene030925:intron | 25.0% |
| !!! | GACCTATTTTGTTTTGTTTT+TGG | - | chr4.3:11302774-11302793 | MS.gene030925:intron | 25.0% |
| !!! | GTTCTTTTGATTGTAGAAAA+TGG | - | chr4.3:11302963-11302982 | MS.gene030925:intron | 25.0% |
| AAAGTTTGGAAGGAAAAGAA+AGG | + | chr4.3:11304203-11304222 | None:intergenic | 30.0% | |
| AACCAAACAAATCAGAACAA+TGG | + | chr4.3:11302398-11302417 | None:intergenic | 30.0% | |
| AATGCACCCTACATAAATAA+TGG | - | chr4.3:11303709-11303728 | MS.gene030925:intron | 30.0% | |
| ACATCCACCATTATTTATGT+AGG | + | chr4.3:11303719-11303738 | None:intergenic | 30.0% | |
| ACTAAATGTGATTGATACCT+AGG | - | chr4.3:11304050-11304069 | MS.gene030925:intron | 30.0% | |
| ATAACATGAAAGTAAGGTAG+AGG | - | chr4.3:11303958-11303977 | MS.gene030925:intron | 30.0% | |
| ATTGTGAGTGAAAGAACAAA+TGG | - | chr4.3:11304277-11304296 | MS.gene030925:CDS | 30.0% | |
| CATCCACCATTATTTATGTA+GGG | + | chr4.3:11303718-11303737 | None:intergenic | 30.0% | |
| CATTTAGTTACAGAATCAGA+AGG | + | chr4.3:11304038-11304057 | None:intergenic | 30.0% | |
| CCCACGAAATTAAAATGAAA+AGG | + | chr4.3:11302333-11302352 | None:intergenic | 30.0% | |
| CTAAATGTGATTGATACCTA+GGG | - | chr4.3:11304051-11304070 | MS.gene030925:intron | 30.0% | |
| GACGTAATTAGTAATATGGA+TGG | - | chr4.3:11302525-11302544 | MS.gene030925:intron | 30.0% | |
| GTAAACTATTTATCCATCTC+AGG | - | chr4.3:11303900-11303919 | MS.gene030925:intron | 30.0% | |
| TCAAATAGAGCAAATTCTCA+TGG | + | chr4.3:11304122-11304141 | None:intergenic | 30.0% | |
| TCAGAAGGGAAAAAACATTT+CGG | + | chr4.3:11304023-11304042 | None:intergenic | 30.0% | |
| TGATGAAGATTGTTTCCATA+TGG | + | chr4.3:11303243-11303262 | None:intergenic | 30.0% | |
| ! | ATGCATTTTTATATTGTCCG+TGG | - | chr4.3:11302732-11302751 | MS.gene030925:intron | 30.0% |
| ! | GAGAATTTGCTCTATTTGAA+GGG | - | chr4.3:11304123-11304142 | MS.gene030925:intron | 30.0% |
| ! | GTATTTTGTGTTCTTTGTTC+AGG | - | chr4.3:11304239-11304258 | MS.gene030925:CDS | 30.0% |
| ! | TGAGAATTTGCTCTATTTGA+AGG | - | chr4.3:11304122-11304141 | MS.gene030925:intron | 30.0% |
| ! | TTGACATTGTTCTTCTGTTT+TGG | - | chr4.3:11302437-11302456 | MS.gene030925:intron | 30.0% |
| !! | GATAAAAGTGTTGATGTGAT+TGG | + | chr4.3:11304162-11304181 | None:intergenic | 30.0% |
| !! | TCTGATTTGTTTGGTTTCTA+GGG | - | chr4.3:11302402-11302421 | MS.gene030925:CDS | 30.0% |
| !! | TTCCATTGTTCTGATTTGTT+TGG | - | chr4.3:11302393-11302412 | MS.gene030925:CDS | 30.0% |
| !! | TTCTGATTTGTTTGGTTTCT+AGG | - | chr4.3:11302401-11302420 | MS.gene030925:CDS | 30.0% |
| !!! | CCCTTTTCATTTTAATTTCG+TGG | - | chr4.3:11302329-11302348 | MS.gene030925:intron | 30.0% |
| ACAAAGAGAACACAACACAT+GGG | - | chr4.3:11303262-11303281 | MS.gene030925:intron | 35.0% | |
| ACATGTGGATTCGATTTAGT+CGG | - | chr4.3:11303013-11303032 | MS.gene030925:intron | 35.0% | |
| ACGCATAAGAAAAGTTTGGA+AGG | + | chr4.3:11304213-11304232 | None:intergenic | 35.0% | |
| ATAGAGCAAATTCTCATGGA+TGG | + | chr4.3:11304118-11304137 | None:intergenic | 35.0% | |
| ATTTGCTCTATTTGAAGGGA+AGG | - | chr4.3:11304127-11304146 | MS.gene030925:intron | 35.0% | |
| CTTGAATTGAGAAAGCTAGA+AGG | - | chr4.3:11304081-11304100 | MS.gene030925:intron | 35.0% | |
| CTTTAGGTAACATCACCATA+TGG | - | chr4.3:11303225-11303244 | MS.gene030925:CDS | 35.0% | |
| GACGTTATTCTGGATTTCTT+CGG | + | chr4.3:11302216-11302235 | None:intergenic | 35.0% | |
| GTACACGCATAAGAAAAGTT+TGG | + | chr4.3:11304217-11304236 | None:intergenic | 35.0% | |
| TCATGACTTTCAGATCGTAT+CGG | + | chr4.3:11303104-11303123 | None:intergenic | 35.0% | |
| ! | CAATTCCAATTTTCCAGTCA+AGG | + | chr4.3:11303380-11303399 | None:intergenic | 35.0% |
| ! | TGGTGGATGTTACTAAATGT+TGG | - | chr4.3:11303729-11303748 | MS.gene030925:intron | 35.0% |
| ! | TTTTTATATTGTCCGTGGTG+TGG | - | chr4.3:11302737-11302756 | MS.gene030925:intron | 35.0% |
| !!! | GTTCTTCTGTTTTGGTCAAT+TGG | - | chr4.3:11302445-11302464 | MS.gene030925:intron | 35.0% |
| !!! | TTCTGTTTTGGTCAATTGGT+GGG | - | chr4.3:11302449-11302468 | MS.gene030925:intron | 35.0% |
| AGTAATTGTCAGCCATTGAG+AGG | + | chr4.3:11303475-11303494 | None:intergenic | 40.0% | |
| ATATACCGCTCACATACATG+TGG | - | chr4.3:11302998-11303017 | MS.gene030925:intron | 40.0% | |
| ATGTCTTTAGGCATCTGCAT+TGG | - | chr4.3:11304322-11304341 | MS.gene030925:CDS | 40.0% | |
| CACAAAGAGAACACAACACA+TGG | - | chr4.3:11303261-11303280 | MS.gene030925:intron | 40.0% | |
| CATTTACGACTCAAGAGACT+GGG | - | chr4.3:11303292-11303311 | MS.gene030925:intron | 40.0% | |
| GAAAATTGGAATTGCAGCCA+AGG | - | chr4.3:11303386-11303405 | MS.gene030925:intron | 40.0% | |
| GAGTTTCAGCTTTGCAATTG+TGG | - | chr4.3:11304344-11304363 | MS.gene030925:CDS | 40.0% | |
| GATTGATTGAGAAGATGCAG+AGG | + | chr4.3:11302133-11302152 | None:intergenic | 40.0% | |
| GCACCCTACATAAATAATGG+TGG | - | chr4.3:11303712-11303731 | MS.gene030925:intron | 40.0% | |
| GTGAACCTTGACTGGAAAAT+TGG | - | chr4.3:11303372-11303391 | MS.gene030925:intron | 40.0% | |
| TACGAAAATGTCTTGCACGT+TGG | - | chr4.3:11303042-11303061 | MS.gene030925:intron | 40.0% | |
| TGAAAGAACAAATGGCAGAG+TGG | - | chr4.3:11304285-11304304 | MS.gene030925:CDS | 40.0% | |
| TGCTAAGAAGGAGAAGATTG+AGG | - | chr4.3:11303422-11303441 | MS.gene030925:intron | 40.0% | |
| ! | TGTCCAGTTCTGTCTTTTGA+GGG | - | chr4.3:11302919-11302938 | MS.gene030925:intron | 40.0% |
| !! | GTTCAGGCACTGTTTTACAA+TGG | - | chr4.3:11303524-11303543 | MS.gene030925:intron | 40.0% |
| !!! | CTTCTGTTTTGGTCAATTGG+TGG | - | chr4.3:11302448-11302467 | MS.gene030925:intron | 40.0% |
| AAAGCTAGAAGGAGCAGTAG+AGG | - | chr4.3:11304092-11304111 | MS.gene030925:intron | 45.0% | |
| AGGTTAGTGTGAACCTTGAC+TGG | - | chr4.3:11303364-11303383 | MS.gene030925:intron | 45.0% | |
| AGTAAGCTACAGTCCTGAGA+TGG | + | chr4.3:11303916-11303935 | None:intergenic | 45.0% | |
| AGTACTATGACACCACACCA+CGG | + | chr4.3:11302752-11302771 | None:intergenic | 45.0% | |
| ATCCCCTCAAAAGACAGAAC+TGG | + | chr4.3:11302925-11302944 | None:intergenic | 45.0% | |
| ATTACCTTGACAGCGAGAGT+GGG | + | chr4.3:11302287-11302306 | None:intergenic | 45.0% | |
| CAATTCAAGCTCAACTCCCT+AGG | + | chr4.3:11304070-11304089 | None:intergenic | 45.0% | |
| CATTTCGGATCAAACAGCAG+AGG | + | chr4.3:11304008-11304027 | None:intergenic | 45.0% | |
| CCAAAACGACGACGTTATTC+TGG | + | chr4.3:11302226-11302245 | None:intergenic | 45.0% | |
| CGAATCCACATGTATGTGAG+CGG | + | chr4.3:11303006-11303025 | None:intergenic | 45.0% | |
| GATTTCTTCGGAGACGCATT+TGG | + | chr4.3:11302204-11302223 | None:intergenic | 45.0% | |
| GCATTTACGACTCAAGAGAC+TGG | - | chr4.3:11303291-11303310 | MS.gene030925:intron | 45.0% | |
| GCGAGAAAATTGATCCGACT+TGG | - | chr4.3:11303621-11303640 | MS.gene030925:intron | 45.0% | |
| TGGAATTGCAGCCAAGGATT+GGG | - | chr4.3:11303392-11303411 | MS.gene030925:intron | 45.0% | |
| TGTGGATTCGATTTAGTCGG+TGG | - | chr4.3:11303016-11303035 | MS.gene030925:intron | 45.0% | |
| TGTGTGACTCTACCTCTCAA+TGG | - | chr4.3:11303460-11303479 | MS.gene030925:intron | 45.0% | |
| TTGGAATTGCAGCCAAGGAT+TGG | - | chr4.3:11303391-11303410 | MS.gene030925:intron | 45.0% | |
| ! | CCAGAATAACGTCGTCGTTT+TGG | - | chr4.3:11302223-11302242 | MS.gene030925:CDS | 45.0% |
| ! | CTGTCCAGTTCTGTCTTTTG+AGG | - | chr4.3:11302918-11302937 | MS.gene030925:intron | 45.0% |
| ! | GAACTACCTGGCATGCTTTT+GGG | - | chr4.3:11303314-11303333 | MS.gene030925:intron | 45.0% |
| ! | GTCCAGTTCTGTCTTTTGAG+GGG | - | chr4.3:11302920-11302939 | MS.gene030925:intron | 45.0% |
| !! | AAACACGAGAGCATCCAAGT+CGG | + | chr4.3:11303638-11303657 | None:intergenic | 45.0% |
| !! | TGGCATGCTTTTGGGTAGAT+GGG | - | chr4.3:11303322-11303341 | MS.gene030925:intron | 45.0% |
| AGATCAAACCTACGCTGCTC+AGG | + | chr4.3:11302851-11302870 | None:intergenic | 50.0% | |
| CATTACCTTGACAGCGAGAG+TGG | + | chr4.3:11302288-11302307 | None:intergenic | 50.0% | |
| GAACAAATGGCAGAGTGGCA+TGG | - | chr4.3:11304290-11304309 | MS.gene030925:CDS | 50.0% | |
| GGACTACGGGTATGATCATC+GGG | + | chr4.3:11302266-11302285 | None:intergenic | 50.0% | |
| GGGACTACGGGTATGATCAT+CGG | + | chr4.3:11302267-11302286 | None:intergenic | 50.0% | |
| GTAGATGGGGGTAATCAAGG+AGG | - | chr4.3:11303336-11303355 | MS.gene030925:intron | 50.0% | |
| TACCTTCCACACTCGCTATC+TGG | - | chr4.3:11302156-11302175 | MS.gene030925:CDS | 50.0% | |
| TCAAGAGACTGGGAACTACC+TGG | - | chr4.3:11303302-11303321 | MS.gene030925:intron | 50.0% | |
| TGGGTAGATGGGGGTAATCA+AGG | - | chr4.3:11303333-11303352 | MS.gene030925:intron | 50.0% | |
| TGTTCAGGGAAGCAGAGATG+AGG | - | chr4.3:11304254-11304273 | MS.gene030925:CDS | 50.0% | |
| TTCGGAGACGCATTTGGTAC+CGG | + | chr4.3:11302198-11302217 | None:intergenic | 50.0% | |
| ! | CATCTACCCAAAAGCATGCC+AGG | + | chr4.3:11303323-11303342 | None:intergenic | 50.0% |
| ! | GGAACTACCTGGCATGCTTT+TGG | - | chr4.3:11303313-11303332 | MS.gene030925:intron | 50.0% |
| ! | TTGGGACTCGGTTGCTAAGA+AGG | - | chr4.3:11303410-11303429 | MS.gene030925:intron | 50.0% |
| !! | CTGGCATGCTTTTGGGTAGA+TGG | - | chr4.3:11303321-11303340 | MS.gene030925:intron | 50.0% |
| !! | GCATGCTTTTGGGTAGATGG+GGG | - | chr4.3:11303324-11303343 | MS.gene030925:intron | 50.0% |
| !! | GGCATGCTTTTGGGTAGATG+GGG | - | chr4.3:11303323-11303342 | MS.gene030925:intron | 50.0% |
| AGCAACCGAGTCCCAATCCT+TGG | + | chr4.3:11303406-11303425 | None:intergenic | 55.0% | |
| AGCCAGATAGCGAGTGTGGA+AGG | + | chr4.3:11302161-11302180 | None:intergenic | 55.0% | |
| CGTAAGCCAGATAGCGAGTG+TGG | + | chr4.3:11302165-11302184 | None:intergenic | 55.0% | |
| GGGTAATCAAGGAGGTCACG+AGG | - | chr4.3:11303344-11303363 | MS.gene030925:intron | 55.0% | |
| TAGTCCCACTCTCGCTGTCA+AGG | - | chr4.3:11302280-11302299 | MS.gene030925:intron | 55.0% | |
| TGACAGCGAGAGTGGGACTA+CGG | + | chr4.3:11302280-11302299 | None:intergenic | 55.0% | |
| TGCAGCCAAGGATTGGGACT+CGG | - | chr4.3:11303398-11303417 | MS.gene030925:intron | 55.0% | |
| TGGCTTACGTTACCCACCAC+CGG | - | chr4.3:11302176-11302195 | MS.gene030925:CDS | 55.0% | |
| !! | ACGCATTTGGTACCGGTGGT+GGG | + | chr4.3:11302191-11302210 | None:intergenic | 55.0% |
| !!! | TTTTGGAGCCTGAGCAGCGT+AGG | - | chr4.3:11302840-11302859 | MS.gene030925:intron | 55.0% |
| GACAGCGAGAGTGGGACTAC+GGG | + | chr4.3:11302279-11302298 | None:intergenic | 60.0% | |
| ! | GGAGACGCATTTGGTACCGG+TGG | + | chr4.3:11302195-11302214 | None:intergenic | 60.0% |
| !! | GACGCATTTGGTACCGGTGG+TGG | + | chr4.3:11302192-11302211 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 11302101 | 11304405 | 11302101 | ID=MS.gene030925 |
| chr4.3 | mRNA | 11302101 | 11304405 | 11302101 | ID=MS.gene030925.t1;Parent=MS.gene030925 |
| chr4.3 | exon | 11304205 | 11304405 | 11304205 | ID=MS.gene030925.t1.exon1;Parent=MS.gene030925.t1 |
| chr4.3 | CDS | 11304205 | 11304405 | 11304205 | ID=cds.MS.gene030925.t1;Parent=MS.gene030925.t1 |
| chr4.3 | exon | 11303063 | 11303275 | 11303063 | ID=MS.gene030925.t1.exon2;Parent=MS.gene030925.t1 |
| chr4.3 | CDS | 11303063 | 11303275 | 11303063 | ID=cds.MS.gene030925.t1;Parent=MS.gene030925.t1 |
| chr4.3 | exon | 11302358 | 11302434 | 11302358 | ID=MS.gene030925.t1.exon3;Parent=MS.gene030925.t1 |
| chr4.3 | CDS | 11302358 | 11302434 | 11302358 | ID=cds.MS.gene030925.t1;Parent=MS.gene030925.t1 |
| chr4.3 | exon | 11302101 | 11302245 | 11302101 | ID=MS.gene030925.t1.exon4;Parent=MS.gene030925.t1 |
| chr4.3 | CDS | 11302101 | 11302245 | 11302101 | ID=cds.MS.gene030925.t1;Parent=MS.gene030925.t1 |
| Gene Sequence |
| Protein sequence |
