Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47907.t1 | XP_003629981.1 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.40E-112 | 415.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47907.t1 | Q6IDL4 | 67.1 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 7.1e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47907.t1 | G7L9I3 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 9.8e-113 | 415.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77559 | MS.gene47907 | PPI |
| MS.gene47907 | MS.gene96773 | PPI |
| MS.gene47907 | MS.gene67216 | PPI |
| MS.gene047149 | MS.gene47907 | PPI |
| MS.gene79918 | MS.gene47907 | PPI |
| MS.gene47907 | MS.gene045327 | PPI |
| MS.gene47907 | MS.gene030925 | PPI |
| MS.gene47907 | MS.gene006810 | PPI |
| MS.gene006810 | MS.gene47907 | PPI |
| MS.gene002097 | MS.gene47907 | PPI |
| MS.gene75647 | MS.gene47907 | PPI |
| MS.gene47907 | MS.gene072012 | PPI |
| MS.gene27948 | MS.gene47907 | PPI |
| MS.gene47907 | MS.gene031477 | PPI |
| MS.gene47907 | MS.gene56516 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47907.t1 | MTR_8g088940 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.33e-154 | 427 |
| MS.gene47907.t1 | MTR_2g007210 | 72.642 | 212 | 51 | 3 | 1 | 211 | 1 | 206 | 6.70e-111 | 316 |
| MS.gene47907.t1 | MTR_8g088980 | 92.994 | 157 | 11 | 0 | 55 | 211 | 6 | 162 | 4.01e-106 | 302 |
| MS.gene47907.t1 | MTR_3g072600 | 65.877 | 211 | 68 | 2 | 3 | 211 | 9 | 217 | 1.02e-100 | 291 |
| MS.gene47907.t1 | MTR_5g058140 | 70.213 | 188 | 53 | 2 | 24 | 211 | 28 | 212 | 2.89e-93 | 271 |
| MS.gene47907.t1 | MTR_4g082315 | 41.919 | 198 | 102 | 3 | 22 | 211 | 24 | 216 | 7.51e-55 | 174 |
| MS.gene47907.t1 | MTR_6g012770 | 40.306 | 196 | 105 | 2 | 24 | 211 | 21 | 212 | 6.75e-53 | 169 |
| MS.gene47907.t1 | MTR_7g011490 | 39.796 | 196 | 105 | 3 | 24 | 211 | 22 | 212 | 5.82e-48 | 156 |
| MS.gene47907.t1 | MTR_5g042260 | 34.579 | 214 | 126 | 4 | 8 | 211 | 10 | 219 | 2.70e-42 | 142 |
| MS.gene47907.t1 | MTR_5g042270 | 34.831 | 178 | 112 | 3 | 35 | 211 | 11 | 185 | 2.26e-32 | 115 |
| MS.gene47907.t1 | MTR_5g042320 | 33.023 | 215 | 129 | 5 | 8 | 211 | 13 | 223 | 3.00e-31 | 114 |
| MS.gene47907.t1 | MTR_5g042320 | 30.460 | 174 | 106 | 5 | 8 | 170 | 13 | 182 | 6.98e-18 | 78.6 |
| MS.gene47907.t1 | MTR_7g095690 | 26.214 | 206 | 135 | 5 | 11 | 207 | 7 | 204 | 1.92e-14 | 69.7 |
| MS.gene47907.t1 | MTR_1g102720 | 26.486 | 185 | 127 | 4 | 27 | 207 | 27 | 206 | 2.06e-13 | 66.6 |
| MS.gene47907.t1 | MTR_5g042300 | 31.707 | 123 | 69 | 3 | 89 | 211 | 41 | 148 | 4.59e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47907.t1 | AT1G09580 | 67.150 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 2.05e-106 | 305 |
| MS.gene47907.t1 | AT1G57620 | 65.714 | 210 | 72 | 0 | 2 | 211 | 3 | 212 | 3.28e-104 | 299 |
| MS.gene47907.t1 | AT1G21900 | 70.157 | 191 | 53 | 3 | 24 | 211 | 27 | 216 | 2.86e-94 | 274 |
| MS.gene47907.t1 | AT3G10780 | 55.000 | 200 | 84 | 3 | 17 | 211 | 19 | 217 | 2.24e-69 | 211 |
| MS.gene47907.t1 | AT1G14010 | 42.857 | 210 | 112 | 5 | 7 | 211 | 6 | 212 | 2.16e-52 | 168 |
| MS.gene47907.t1 | AT1G26690 | 39.713 | 209 | 115 | 5 | 8 | 211 | 12 | 214 | 2.86e-52 | 167 |
| MS.gene47907.t1 | AT1G69460 | 37.900 | 219 | 117 | 5 | 2 | 211 | 6 | 214 | 2.80e-48 | 157 |
| MS.gene47907.t1 | AT2G03290 | 38.384 | 198 | 114 | 3 | 20 | 211 | 18 | 213 | 8.32e-48 | 156 |
| MS.gene47907.t1 | AT3G29070 | 39.583 | 192 | 111 | 4 | 24 | 211 | 35 | 225 | 1.71e-44 | 148 |
| MS.gene47907.t1 | AT2G03040 | 35.762 | 151 | 89 | 4 | 20 | 164 | 18 | 166 | 4.42e-28 | 104 |
Find 51 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAACGACGACGTTATTC+TGG | 0.202384 | 4.1:+11686296 | None:intergenic |
| GGAACTACCTGGCATGCTTT+TGG | 0.252996 | 4.1:-11685210 | MS.gene47907:CDS |
| CCAGAATAACGTCGTCGTTT+TGG | 0.269487 | 4.1:-11686296 | MS.gene47907:CDS |
| GTGAACCTTGACTGGAAAAT+TGG | 0.288089 | 4.1:-11685151 | MS.gene47907:CDS |
| TACCTTCCACACTCGCTATC+TGG | 0.307658 | 4.1:-11686363 | MS.gene47907:CDS |
| TCAGAAGAAGAAGCTTATAT+AGG | 0.352870 | 4.1:-11684168 | None:intergenic |
| TTGGAATTGCAGCCAAGGAT+TGG | 0.404517 | 4.1:-11685132 | MS.gene47907:CDS |
| GATTTCTTCGGAGACGCATT+TGG | 0.406641 | 4.1:+11686318 | None:intergenic |
| TGGAATTGCAGCCAAGGATT+GGG | 0.419986 | 4.1:-11685131 | MS.gene47907:CDS |
| CTTGAGCTGAGAAAGCTAGA+AGG | 0.424644 | 4.1:-11684465 | MS.gene47907:CDS |
| GACGCATTTGGTACCGGTGG+TGG | 0.436098 | 4.1:+11686330 | None:intergenic |
| TTCGGAGACGCATTTGGTAC+CGG | 0.451076 | 4.1:+11686324 | None:intergenic |
| TGGTTTAGTATTATGTCGTT+AGG | 0.458318 | 4.1:-11684242 | MS.gene47907:CDS |
| TGAAAATTTGCTCTATCTGA+AGG | 0.460174 | 4.1:-11684424 | MS.gene47907:CDS |
| CTTTAGGTAACATCACCATA+TGG | 0.460528 | 4.1:-11685298 | MS.gene47907:intron |
| AGGTTAGTGTGAACCTTGAC+TGG | 0.462981 | 4.1:-11685159 | MS.gene47907:CDS |
| GAGTCTCAGCTTTGCAATTG+TGG | 0.475357 | 4.1:-11684208 | MS.gene47907:CDS |
| TTGGGACTCAGTTGCTAAGA+AGG | 0.475920 | 4.1:-11685113 | MS.gene47907:CDS |
| GACGTTATTCTGGATTTCTT+CGG | 0.476995 | 4.1:+11686306 | None:intergenic |
| TGATGAAGATTGTTTCCATA+TGG | 0.488589 | 4.1:+11685283 | None:intergenic |
| AGCAACTGAGTCCCAATCCT+TGG | 0.491833 | 4.1:+11685120 | None:intergenic |
| GGACTACGGGTATGATCATC+GGG | 0.494222 | 4.1:+11686256 | None:intergenic |
| GCATTTACGACTCAAGAGAC+TGG | 0.507558 | 4.1:-11685232 | MS.gene47907:CDS |
| TGACAGCGAGAGTGGGACTA+CGG | 0.514356 | 4.1:+11686242 | None:intergenic |
| CATCTACCCAAAAGCATGCC+AGG | 0.519642 | 4.1:+11685203 | None:intergenic |
| CATTACCTTGACAGCGAGAG+TGG | 0.529347 | 4.1:+11686234 | None:intergenic |
| AAAGCTAGAAGGAGCTGTAG+AGG | 0.537093 | 4.1:-11684454 | MS.gene47907:CDS |
| AGCCAGATAGCGAGTGTGGA+AGG | 0.543450 | 4.1:+11686361 | None:intergenic |
| CACAAAGAGAATACAACACA+TGG | 0.546181 | 4.1:-11685262 | MS.gene47907:CDS |
| GGGACTACGGGTATGATCAT+CGG | 0.549429 | 4.1:+11686255 | None:intergenic |
| ATTTGCTCTATCTGAAGGGA+AGG | 0.554587 | 4.1:-11684419 | MS.gene47907:intron |
| GAAAATTGGAATTGCAGCCA+AGG | 0.558923 | 4.1:-11685137 | MS.gene47907:CDS |
| CGTAAGCCAGATAGCGAGTG+TGG | 0.559231 | 4.1:+11686357 | None:intergenic |
| GATTGATTGAGAAGATGCAG+AGG | 0.562203 | 4.1:+11686389 | None:intergenic |
| TCAAGAGACTGGGAACTACC+TGG | 0.566601 | 4.1:-11685221 | MS.gene47907:CDS |
| GAAAATTTGCTCTATCTGAA+GGG | 0.566763 | 4.1:-11684423 | MS.gene47907:CDS |
| CATTTACGACTCAAGAGACT+GGG | 0.567095 | 4.1:-11685231 | MS.gene47907:CDS |
| GACAGCGAGAGTGGGACTAC+GGG | 0.568049 | 4.1:+11686243 | None:intergenic |
| TAGTCCCACTCTCGCTGTCA+AGG | 0.570992 | 4.1:-11686239 | MS.gene47907:intron |
| ATCGTGAGTGAAAGAACAAA+CGG | 0.572432 | 4.1:-11684275 | MS.gene47907:CDS |
| ACGCATTTGGTACCGGTGGT+GGG | 0.588544 | 4.1:+11686331 | None:intergenic |
| TGGCTTACGTTACCCACCAC+CGG | 0.590818 | 4.1:-11686343 | MS.gene47907:CDS |
| TGCTAAGAAGGAGAAGATTG+AGG | 0.593000 | 4.1:-11685101 | MS.gene47907:intron |
| GAACAAACGGCAGAGTGGCA+TGG | 0.610011 | 4.1:-11684262 | MS.gene47907:CDS |
| TGTTCAGGGAAGCAGAGATG+AGG | 0.614511 | 4.1:-11684298 | MS.gene47907:intron |
| ATGTCGTTAGGTATCTGCAT+TGG | 0.618449 | 4.1:-11684230 | MS.gene47907:CDS |
| ATTACCTTGACAGCGAGAGT+GGG | 0.651605 | 4.1:+11686235 | None:intergenic |
| GGAGACGCATTTGGTACCGG+TGG | 0.661357 | 4.1:+11686327 | None:intergenic |
| GGGTAATCAAGGAGGTCACG+AGG | 0.668890 | 4.1:-11685179 | MS.gene47907:CDS |
| TGAAAGAACAAACGGCAGAG+TGG | 0.682661 | 4.1:-11684267 | MS.gene47907:CDS |
| ACAAAGAGAATACAACACAT+GGG | 0.710335 | 4.1:-11685261 | MS.gene47907:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAATGTAATCTGTT+GGG | - | chr4.1:11685651-11685670 | MS.gene47907:intron | 15.0% |
| !! | AATTGACGTAATTAGTAATA+TGG | - | chr4.1:11684585-11684604 | MS.gene47907:intron | 20.0% |
| !! | AGAGATATAGATTTAAATTC+AGG | + | chr4.1:11686027-11686046 | None:intergenic | 20.0% |
| !! | ATCCAAAAACAAAACAAAAT+AGG | + | chr4.1:11684843-11684862 | None:intergenic | 20.0% |
| !! | CATTATAAAATGTAATCTGT+TGG | - | chr4.1:11685650-11685669 | MS.gene47907:intron | 20.0% |
| !!! | CATTGTTATATGTCTATTTT+TGG | - | chr4.1:11684887-11684906 | MS.gene47907:intron | 20.0% |
| !!! | CTGATAACTATTTGTTAAAA+TGG | - | chr4.1:11685246-11685265 | MS.gene47907:CDS | 20.0% |
| !!! | TAACTTGTAATGTTTTCTTT+AGG | - | chr4.1:11685273-11685292 | MS.gene47907:CDS | 20.0% |
| !!! | TTGGAAAATATTTCTGTTTA+GGG | - | chr4.1:11685790-11685809 | MS.gene47907:intron | 20.0% |
| ! | AAGTATGAAAGAATCCAAAT+CGG | + | chr4.1:11685695-11685714 | None:intergenic | 25.0% |
| ! | ACAGAGTAAAGATCAATTTA+TGG | + | chr4.1:11684954-11684973 | None:intergenic | 25.0% |
| ! | ATGAATAATTGATTATGCTG+AGG | - | chr4.1:11685900-11685919 | MS.gene47907:intron | 25.0% |
| ! | ATTAATTGTCAGCTATTGAA+AGG | + | chr4.1:11685538-11685557 | None:intergenic | 25.0% |
| ! | CCACGAAATTAAAATGAAAA+GGG | + | chr4.1:11684400-11684419 | None:intergenic | 25.0% |
| ! | GTATCAATCACATATAGAAA+CGG | + | chr4.1:11686089-11686108 | None:intergenic | 25.0% |
| ! | GTTGATCAACAAAAGAAATT+AGG | + | chr4.1:11684751-11684770 | None:intergenic | 25.0% |
| ! | TATAGATTTAAATTCAGGTG+CGG | + | chr4.1:11686022-11686041 | None:intergenic | 25.0% |
| ! | TTCAAATGAAAATGTCATAG+TGG | - | chr4.1:11685205-11685224 | MS.gene47907:CDS | 25.0% |
| ! | TTGGATATATTAATCGATGA+GGG | - | chr4.1:11684857-11684876 | MS.gene47907:intron | 25.0% |
| ! | TTTGGATATATTAATCGATG+AGG | - | chr4.1:11684856-11684875 | MS.gene47907:intron | 25.0% |
| !! | GTTGGAAAATATTTCTGTTT+AGG | - | chr4.1:11685789-11685808 | MS.gene47907:intron | 25.0% |
| !!! | ATTTGTTGATGATCACAAAA+TGG | - | chr4.1:11684659-11684678 | MS.gene47907:intron | 25.0% |
| !!! | CCTTTTCATTTTAATTTCGT+GGG | - | chr4.1:11684398-11684417 | MS.gene47907:intron | 25.0% |
| !!! | GACCTATTTTGTTTTGTTTT+TGG | - | chr4.1:11684838-11684857 | MS.gene47907:intron | 25.0% |
| !!! | GTTCTTTTGATTGTAGAAAA+TGG | - | chr4.1:11685027-11685046 | MS.gene47907:intron | 25.0% |
| AACCAAACAAATCAGAACAA+TGG | + | chr4.1:11684466-11684485 | None:intergenic | 30.0% | |
| AAGATTGAGGTAAGTAGATA+TGG | - | chr4.1:11685499-11685518 | MS.gene47907:intron | 30.0% | |
| ACAAAGAGAATACAACACAT+GGG | - | chr4.1:11685326-11685345 | MS.gene47907:intron | 30.0% | |
| AGATCCATCATTATTGATGT+CGG | + | chr4.1:11685758-11685777 | None:intergenic | 30.0% | |
| AGCTGACAATTAATTACTCA+AGG | - | chr4.1:11685544-11685563 | MS.gene47907:intron | 30.0% | |
| ATGGTTTACTACATTTCTTG+AGG | + | chr4.1:11685930-11685949 | None:intergenic | 30.0% | |
| CCCACGAAATTAAAATGAAA+AGG | + | chr4.1:11684401-11684420 | None:intergenic | 30.0% | |
| CTATATGTGATTGATACCTA+GGG | - | chr4.1:11686092-11686111 | MS.gene47907:intron | 30.0% | |
| GACGTAATTAGTAATATGGA+TGG | - | chr4.1:11684589-11684608 | MS.gene47907:intron | 30.0% | |
| TATATCTCTTCTGTTTGCTT+TGG | - | chr4.1:11686038-11686057 | MS.gene47907:intron | 30.0% | |
| TCTATATGTGATTGATACCT+AGG | - | chr4.1:11686091-11686110 | MS.gene47907:intron | 30.0% | |
| TGATGAAGATTGTTTCCATA+TGG | + | chr4.1:11685307-11685326 | None:intergenic | 30.0% | |
| TGGATCTTCTTACTATATGT+TGG | - | chr4.1:11685771-11685790 | MS.gene47907:intron | 30.0% | |
| TGGTTTAGTATTATGTCGTT+AGG | - | chr4.1:11686345-11686364 | MS.gene47907:CDS | 30.0% | |
| ! | AAGTAACTATAGTCTTGAGA+TGG | + | chr4.1:11685957-11685976 | None:intergenic | 30.0% |
| ! | ATAGAGCAAATTTTCATGGA+TGG | + | chr4.1:11686159-11686178 | None:intergenic | 30.0% |
| ! | ATAGTCTTGAGATGGAAAAA+TGG | + | chr4.1:11685949-11685968 | None:intergenic | 30.0% |
| ! | ATGCATTTTTATATTGTCCG+TGG | - | chr4.1:11684796-11684815 | MS.gene47907:intron | 30.0% |
| ! | GAAAATTTGCTCTATCTGAA+GGG | - | chr4.1:11686164-11686183 | MS.gene47907:intron | 30.0% |
| ! | TCAGATAGAGCAAATTTTCA+TGG | + | chr4.1:11686163-11686182 | None:intergenic | 30.0% |
| ! | TGAAAATTTGCTCTATCTGA+AGG | - | chr4.1:11686163-11686182 | MS.gene47907:intron | 30.0% |
| ! | TTGACATTGTTCTTCTGTTT+TGG | - | chr4.1:11684505-11684524 | MS.gene47907:intron | 30.0% |
| !! | TCTGATTTGTTTGGTTTCTA+GGG | - | chr4.1:11684470-11684489 | MS.gene47907:CDS | 30.0% |
| !! | TTCCATTGTTCTGATTTGTT+TGG | - | chr4.1:11684461-11684480 | MS.gene47907:CDS | 30.0% |
| !! | TTCTGATTTGTTTGGTTTCT+AGG | - | chr4.1:11684469-11684488 | MS.gene47907:CDS | 30.0% |
| !!! | ATATTTTGTGCTGTTTGTTC+AGG | - | chr4.1:11686274-11686293 | MS.gene47907:CDS | 30.0% |
| !!! | CCCTTTTCATTTTAATTTCG+TGG | - | chr4.1:11684397-11684416 | MS.gene47907:intron | 30.0% |
| !!! | GTTCAAGCACTGTTTTAAAA+TGG | - | chr4.1:11685591-11685610 | MS.gene47907:intron | 30.0% |
| !!! | TATTTTGTGCTGTTTGTTCA+GGG | - | chr4.1:11686275-11686294 | MS.gene47907:CDS | 30.0% |
| ACATGTGGATTCGATTTAGT+CGG | - | chr4.1:11685077-11685096 | MS.gene47907:intron | 35.0% | |
| ATCGTGAGTGAAAGAACAAA+CGG | - | chr4.1:11686312-11686331 | MS.gene47907:CDS | 35.0% | |
| CACAAAGAGAATACAACACA+TGG | - | chr4.1:11685325-11685344 | MS.gene47907:intron | 35.0% | |
| CTTTAGGTAACATCACCATA+TGG | - | chr4.1:11685289-11685308 | MS.gene47907:CDS | 35.0% | |
| GACGTTATTCTGGATTTCTT+CGG | + | chr4.1:11684284-11684303 | None:intergenic | 35.0% | |
| GATCCATCATTATTGATGTC+GGG | + | chr4.1:11685757-11685776 | None:intergenic | 35.0% | |
| GCAAGAAAATTGATCCGATT+TGG | - | chr4.1:11685678-11685697 | MS.gene47907:intron | 35.0% | |
| TACAAAAATGTCTTGCACGT+TGG | - | chr4.1:11685106-11685125 | MS.gene47907:CDS | 35.0% | |
| TCATGACTTTCAGATCGTAT+CGG | + | chr4.1:11685168-11685187 | None:intergenic | 35.0% | |
| TCTCGTGTAACATGAAAGTA+AGG | - | chr4.1:11685988-11686007 | MS.gene47907:intron | 35.0% | |
| TTTCATGTTACACGAGAGAA+TGG | + | chr4.1:11685985-11686004 | None:intergenic | 35.0% | |
| ! | CAATTCCAATTTTCCAGTCA+AGG | + | chr4.1:11685444-11685463 | None:intergenic | 35.0% |
| ! | TTTTTATATTGTCCGTGGTG+TGG | - | chr4.1:11684801-11684820 | MS.gene47907:intron | 35.0% |
| !!! | GTTCTTCTGTTTTGGTCAAT+TGG | - | chr4.1:11684513-11684532 | MS.gene47907:intron | 35.0% |
| !!! | TTCTGTTTTGGTCAATTGGT+GGG | - | chr4.1:11684517-11684536 | MS.gene47907:intron | 35.0% |
| ATATACCGCTCACATACATG+TGG | - | chr4.1:11685062-11685081 | MS.gene47907:intron | 40.0% | |
| ATGTCGTTAGGTATCTGCAT+TGG | - | chr4.1:11686357-11686376 | MS.gene47907:CDS | 40.0% | |
| ATTTGCTCTATCTGAAGGGA+AGG | - | chr4.1:11686168-11686187 | MS.gene47907:intron | 40.0% | |
| CATTTACGACTCAAGAGACT+GGG | - | chr4.1:11685356-11685375 | MS.gene47907:intron | 40.0% | |
| CTAGAAGTTGTTGACGTGAT+TGG | + | chr4.1:11686202-11686221 | None:intergenic | 40.0% | |
| GAAAATTGGAATTGCAGCCA+AGG | - | chr4.1:11685450-11685469 | MS.gene47907:intron | 40.0% | |
| GATTGATTGAGAAGATGCAG+AGG | + | chr4.1:11684201-11684220 | None:intergenic | 40.0% | |
| GTACCCGACATCAATAATGA+TGG | - | chr4.1:11685751-11685770 | MS.gene47907:intron | 40.0% | |
| GTGAACCTTGACTGGAAAAT+TGG | - | chr4.1:11685436-11685455 | MS.gene47907:intron | 40.0% | |
| TGCTAAGAAGGAGAAGATTG+AGG | - | chr4.1:11685486-11685505 | MS.gene47907:intron | 40.0% | |
| ! | TGTCCAGTTCTGTCTTTTGA+GGG | - | chr4.1:11684983-11685002 | MS.gene47907:intron | 40.0% |
| !!! | CTTCTGTTTTGGTCAATTGG+TGG | - | chr4.1:11684516-11684535 | MS.gene47907:intron | 40.0% |
| AAAGCTAGAAGGAGCTGTAG+AGG | - | chr4.1:11686133-11686152 | MS.gene47907:intron | 45.0% | |
| AGGTTAGTGTGAACCTTGAC+TGG | - | chr4.1:11685428-11685447 | MS.gene47907:intron | 45.0% | |
| AGTACTATGACACCACACCA+CGG | + | chr4.1:11684816-11684835 | None:intergenic | 45.0% | |
| ATCCCCTCAAAAGACAGAAC+TGG | + | chr4.1:11684989-11685008 | None:intergenic | 45.0% | |
| ATTACCTTGACAGCGAGAGT+GGG | + | chr4.1:11684355-11684374 | None:intergenic | 45.0% | |
| CCAAAACGACGACGTTATTC+TGG | + | chr4.1:11684294-11684313 | None:intergenic | 45.0% | |
| CGAATCCACATGTATGTGAG+CGG | + | chr4.1:11685070-11685089 | None:intergenic | 45.0% | |
| CTTGAGCTGAGAAAGCTAGA+AGG | - | chr4.1:11686122-11686141 | MS.gene47907:intron | 45.0% | |
| GAGTCTCAGCTTTGCAATTG+TGG | - | chr4.1:11686379-11686398 | MS.gene47907:CDS | 45.0% | |
| GATTTCTTCGGAGACGCATT+TGG | + | chr4.1:11684272-11684291 | None:intergenic | 45.0% | |
| GCATTTACGACTCAAGAGAC+TGG | - | chr4.1:11685355-11685374 | MS.gene47907:intron | 45.0% | |
| TGAAAGAACAAACGGCAGAG+TGG | - | chr4.1:11686320-11686339 | MS.gene47907:CDS | 45.0% | |
| TGGAATTGCAGCCAAGGATT+GGG | - | chr4.1:11685456-11685475 | MS.gene47907:intron | 45.0% | |
| TGTGGATTCGATTTAGTCGG+TGG | - | chr4.1:11685080-11685099 | MS.gene47907:intron | 45.0% | |
| TTGGAATTGCAGCCAAGGAT+TGG | - | chr4.1:11685455-11685474 | MS.gene47907:intron | 45.0% | |
| TTGGGACTCAGTTGCTAAGA+AGG | - | chr4.1:11685474-11685493 | MS.gene47907:intron | 45.0% | |
| ! | CCAGAATAACGTCGTCGTTT+TGG | - | chr4.1:11684291-11684310 | MS.gene47907:CDS | 45.0% |
| ! | CTGTCCAGTTCTGTCTTTTG+AGG | - | chr4.1:11684982-11685001 | MS.gene47907:intron | 45.0% |
| ! | GAACTACCTGGCATGCTTTT+GGG | - | chr4.1:11685378-11685397 | MS.gene47907:intron | 45.0% |
| ! | GTCCAGTTCTGTCTTTTGAG+GGG | - | chr4.1:11684984-11685003 | MS.gene47907:intron | 45.0% |
| !! | TGGCATGCTTTTGGGTAGAT+GGG | - | chr4.1:11685386-11685405 | MS.gene47907:intron | 45.0% |
| AGATCAAACCTACGCTGCTC+AGG | + | chr4.1:11684915-11684934 | None:intergenic | 50.0% | |
| AGCAACTGAGTCCCAATCCT+TGG | + | chr4.1:11685470-11685489 | None:intergenic | 50.0% | |
| CATTACCTTGACAGCGAGAG+TGG | + | chr4.1:11684356-11684375 | None:intergenic | 50.0% | |
| GGACTACGGGTATGATCATC+GGG | + | chr4.1:11684334-11684353 | None:intergenic | 50.0% | |
| GGGACTACGGGTATGATCAT+CGG | + | chr4.1:11684335-11684354 | None:intergenic | 50.0% | |
| GTAGATGGGGGTAATCAAGG+AGG | - | chr4.1:11685400-11685419 | MS.gene47907:intron | 50.0% | |
| TACCTTCCACACTCGCTATC+TGG | - | chr4.1:11684224-11684243 | MS.gene47907:CDS | 50.0% | |
| TCAAGAGACTGGGAACTACC+TGG | - | chr4.1:11685366-11685385 | MS.gene47907:intron | 50.0% | |
| TGGGTAGATGGGGGTAATCA+AGG | - | chr4.1:11685397-11685416 | MS.gene47907:intron | 50.0% | |
| TGTTCAGGGAAGCAGAGATG+AGG | - | chr4.1:11686289-11686308 | MS.gene47907:CDS | 50.0% | |
| TTCGGAGACGCATTTGGTAC+CGG | + | chr4.1:11684266-11684285 | None:intergenic | 50.0% | |
| ! | CATCTACCCAAAAGCATGCC+AGG | + | chr4.1:11685387-11685406 | None:intergenic | 50.0% |
| ! | GGAACTACCTGGCATGCTTT+TGG | - | chr4.1:11685377-11685396 | MS.gene47907:intron | 50.0% |
| !! | CTGGCATGCTTTTGGGTAGA+TGG | - | chr4.1:11685385-11685404 | MS.gene47907:intron | 50.0% |
| !! | GCATGCTTTTGGGTAGATGG+GGG | - | chr4.1:11685388-11685407 | MS.gene47907:intron | 50.0% |
| !! | GGCATGCTTTTGGGTAGATG+GGG | - | chr4.1:11685387-11685406 | MS.gene47907:intron | 50.0% |
| AGCCAGATAGCGAGTGTGGA+AGG | + | chr4.1:11684229-11684248 | None:intergenic | 55.0% | |
| CAGCTCAAGCTCAACTCCCT+AGG | + | chr4.1:11686111-11686130 | None:intergenic | 55.0% | |
| CGTAAGCCAGATAGCGAGTG+TGG | + | chr4.1:11684233-11684252 | None:intergenic | 55.0% | |
| GAACAAACGGCAGAGTGGCA+TGG | - | chr4.1:11686325-11686344 | MS.gene47907:CDS | 55.0% | |
| GGGTAATCAAGGAGGTCACG+AGG | - | chr4.1:11685408-11685427 | MS.gene47907:intron | 55.0% | |
| TAGTCCCACTCTCGCTGTCA+AGG | - | chr4.1:11684348-11684367 | MS.gene47907:intron | 55.0% | |
| TGACAGCGAGAGTGGGACTA+CGG | + | chr4.1:11684348-11684367 | None:intergenic | 55.0% | |
| TGGCTTACGTTACCCACCAC+CGG | - | chr4.1:11684244-11684263 | MS.gene47907:CDS | 55.0% | |
| !! | ACGCATTTGGTACCGGTGGT+GGG | + | chr4.1:11684259-11684278 | None:intergenic | 55.0% |
| !!! | TTTTGGAGCCTGAGCAGCGT+AGG | - | chr4.1:11684904-11684923 | MS.gene47907:intron | 55.0% |
| GACAGCGAGAGTGGGACTAC+GGG | + | chr4.1:11684347-11684366 | None:intergenic | 60.0% | |
| ! | GGAGACGCATTTGGTACCGG+TGG | + | chr4.1:11684263-11684282 | None:intergenic | 60.0% |
| !! | GACGCATTTGGTACCGGTGG+TGG | + | chr4.1:11684260-11684279 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11684169 | 11686440 | 11684169 | ID=MS.gene47907 |
| chr4.1 | mRNA | 11684169 | 11686440 | 11684169 | ID=MS.gene47907.t1;Parent=MS.gene47907 |
| chr4.1 | exon | 11686240 | 11686440 | 11686240 | ID=MS.gene47907.t1.exon1;Parent=MS.gene47907.t1 |
| chr4.1 | CDS | 11686240 | 11686440 | 11686240 | ID=cds.MS.gene47907.t1;Parent=MS.gene47907.t1 |
| chr4.1 | exon | 11685102 | 11685314 | 11685102 | ID=MS.gene47907.t1.exon2;Parent=MS.gene47907.t1 |
| chr4.1 | CDS | 11685102 | 11685314 | 11685102 | ID=cds.MS.gene47907.t1;Parent=MS.gene47907.t1 |
| chr4.1 | exon | 11684420 | 11684496 | 11684420 | ID=MS.gene47907.t1.exon3;Parent=MS.gene47907.t1 |
| chr4.1 | CDS | 11684420 | 11684496 | 11684420 | ID=cds.MS.gene47907.t1;Parent=MS.gene47907.t1 |
| chr4.1 | exon | 11684169 | 11684313 | 11684169 | ID=MS.gene47907.t1.exon4;Parent=MS.gene47907.t1 |
| chr4.1 | CDS | 11684169 | 11684313 | 11684169 | ID=cds.MS.gene47907.t1;Parent=MS.gene47907.t1 |
| Gene Sequence |
| Protein sequence |
