Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072012.t1 | XP_003593047.1 | 97.6 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 6.80E-109 | 403.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072012.t1 | Q6IDL4 | 62.6 | 211 | 74 | 2 | 1 | 206 | 7 | 217 | 9.7e-72 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072012.t1 | A2Q3U2 | 97.6 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 4.9e-109 | 403.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27948 | MS.gene072012 | PPI |
| MS.gene96773 | MS.gene072012 | PPI |
| MS.gene030925 | MS.gene072012 | PPI |
| MS.gene79918 | MS.gene072012 | PPI |
| MS.gene047149 | MS.gene072012 | PPI |
| MS.gene072012 | MS.gene56516 | PPI |
| MS.gene045327 | MS.gene072012 | PPI |
| MS.gene67216 | MS.gene072012 | PPI |
| MS.gene56516 | MS.gene072012 | PPI |
| MS.gene006810 | MS.gene072012 | PPI |
| MS.gene002097 | MS.gene072012 | PPI |
| MS.gene47907 | MS.gene072012 | PPI |
| MS.gene75647 | MS.gene072012 | PPI |
| MS.gene77559 | MS.gene072012 | PPI |
| MS.gene031477 | MS.gene072012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072012.t1 | MTR_2g007210 | 97.573 | 206 | 5 | 0 | 1 | 206 | 1 | 206 | 7.18e-151 | 417 |
| MS.gene072012.t1 | MTR_8g088940 | 72.170 | 212 | 52 | 3 | 1 | 206 | 1 | 211 | 6.58e-103 | 296 |
| MS.gene072012.t1 | MTR_3g072600 | 64.115 | 209 | 67 | 3 | 5 | 206 | 10 | 217 | 1.19e-93 | 273 |
| MS.gene072012.t1 | MTR_5g058140 | 69.519 | 187 | 55 | 1 | 20 | 206 | 28 | 212 | 1.62e-93 | 272 |
| MS.gene072012.t1 | MTR_8g088980 | 75.159 | 157 | 38 | 1 | 51 | 206 | 6 | 162 | 2.69e-83 | 244 |
| MS.gene072012.t1 | MTR_4g082315 | 41.451 | 193 | 105 | 2 | 20 | 206 | 26 | 216 | 1.73e-55 | 176 |
| MS.gene072012.t1 | MTR_6g012770 | 38.889 | 198 | 112 | 3 | 16 | 206 | 17 | 212 | 5.09e-51 | 164 |
| MS.gene072012.t1 | MTR_7g011490 | 37.019 | 208 | 123 | 2 | 5 | 206 | 7 | 212 | 9.12e-49 | 158 |
| MS.gene072012.t1 | MTR_5g042260 | 35.885 | 209 | 127 | 5 | 5 | 206 | 11 | 219 | 2.92e-40 | 137 |
| MS.gene072012.t1 | MTR_5g042270 | 35.955 | 178 | 109 | 4 | 31 | 206 | 11 | 185 | 2.52e-32 | 115 |
| MS.gene072012.t1 | MTR_5g042320 | 33.175 | 211 | 131 | 6 | 5 | 206 | 14 | 223 | 5.49e-29 | 108 |
| MS.gene072012.t1 | MTR_5g042320 | 31.325 | 166 | 104 | 6 | 5 | 161 | 14 | 178 | 2.94e-16 | 73.9 |
| MS.gene072012.t1 | MTR_7g095690 | 24.138 | 203 | 144 | 4 | 5 | 202 | 7 | 204 | 8.10e-15 | 70.5 |
| MS.gene072012.t1 | MTR_5g042300 | 30.894 | 123 | 71 | 2 | 84 | 206 | 40 | 148 | 3.31e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072012.t1 | AT1G09580 | 62.559 | 211 | 74 | 2 | 1 | 206 | 7 | 217 | 4.12e-97 | 281 |
| MS.gene072012.t1 | AT1G57620 | 64.706 | 204 | 71 | 1 | 4 | 206 | 9 | 212 | 4.14e-97 | 281 |
| MS.gene072012.t1 | AT1G21900 | 62.687 | 201 | 72 | 3 | 9 | 206 | 16 | 216 | 1.19e-87 | 257 |
| MS.gene072012.t1 | AT3G10780 | 53.234 | 201 | 83 | 4 | 14 | 206 | 20 | 217 | 4.48e-65 | 200 |
| MS.gene072012.t1 | AT1G26690 | 38.462 | 208 | 123 | 3 | 4 | 206 | 7 | 214 | 8.54e-53 | 169 |
| MS.gene072012.t1 | AT1G14010 | 39.130 | 207 | 121 | 3 | 4 | 206 | 7 | 212 | 5.51e-51 | 164 |
| MS.gene072012.t1 | AT2G03290 | 38.503 | 187 | 110 | 1 | 25 | 206 | 27 | 213 | 1.25e-48 | 158 |
| MS.gene072012.t1 | AT1G69460 | 40.104 | 192 | 111 | 2 | 19 | 206 | 23 | 214 | 2.07e-48 | 157 |
| MS.gene072012.t1 | AT3G29070 | 37.173 | 191 | 116 | 2 | 20 | 206 | 35 | 225 | 6.17e-43 | 144 |
| MS.gene072012.t1 | AT2G03040 | 33.571 | 140 | 88 | 1 | 25 | 159 | 27 | 166 | 2.02e-27 | 102 |
Find 41 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAATCTTGATTGGAAAAT+TGG | 0.188133 | 2.4:-75590492 | MS.gene072012:CDS |
| GGAACTACATTGCATGCTTC+TGG | 0.224797 | 2.4:-75590548 | MS.gene072012:CDS |
| TCTAAATAAGCTTCTTCTTC+TGG | 0.233829 | 2.4:+75589918 | None:intergenic |
| TCAGAATAACGTTGTTGTTT+TGG | 0.238420 | 2.4:-75591576 | MS.gene072012:CDS |
| TCTCAGCATGTCATGCTATA+TGG | 0.316253 | 2.4:-75591643 | MS.gene072012:CDS |
| TGGATCTCATTACCTGCTTC+AGG | 0.363742 | 2.4:-75591623 | MS.gene072012:CDS |
| TATGGAGAAGAACATAGTTT+TGG | 0.368348 | 2.4:-75591687 | MS.gene072012:CDS |
| TGAGAATTTGATACGTCTTA+AGG | 0.387782 | 2.4:-75590175 | MS.gene072012:CDS |
| GAACTACATTGCATGCTTCT+GGG | 0.396433 | 2.4:-75590547 | MS.gene072012:CDS |
| TTGGAGTTGCAGCCAAGGAT+TGG | 0.411747 | 2.4:-75590473 | MS.gene072012:CDS |
| TGGAGTTGCAGCCAAGGATT+GGG | 0.416172 | 2.4:-75590472 | MS.gene072012:CDS |
| AATTTCTTCAGAAACACATT+TGG | 0.418353 | 2.4:+75591598 | None:intergenic |
| CTTGAGTTGAGAAAGCTAGA+AGG | 0.434730 | 2.4:-75590216 | MS.gene072012:CDS |
| ACACATTTGGTTCCTGAAGC+AGG | 0.463623 | 2.4:+75591611 | None:intergenic |
| ATATTATTAATCAGGGAAGC+AGG | 0.472514 | 2.4:-75590055 | MS.gene072012:intron |
| TGATGAATATTGTTTCCATA+TGG | 0.476604 | 2.4:+75590621 | None:intergenic |
| CCCACTCTCTGAAGTTGTAA+AGG | 0.497252 | 2.4:+75590569 | None:intergenic |
| TTCTGGGTTGCTCAGAATCA+TGG | 0.499578 | 2.4:-75590531 | MS.gene072012:CDS |
| ATTTGATACGTCTTAAGGAC+AGG | 0.501669 | 2.4:-75590170 | MS.gene072012:intron |
| AGCAACTGAATCCCAATCCT+TGG | 0.504479 | 2.4:+75590461 | None:intergenic |
| ATGTCAGTATGAATCTTGAT+TGG | 0.523723 | 2.4:-75590500 | MS.gene072012:CDS |
| GGTTGGTTTGATCGATCAAT+CGG | 0.527885 | 2.4:+75591536 | None:intergenic |
| CCTTTACAACTTCAGAGAGT+GGG | 0.532604 | 2.4:-75590569 | MS.gene072012:CDS |
| GAAAATTGGAGTTGCAGCCA+AGG | 0.537415 | 2.4:-75590478 | MS.gene072012:CDS |
| GCCTTTACAACTTCAGAGAG+TGG | 0.553325 | 2.4:-75590570 | MS.gene072012:CDS |
| TAATCAGGGAAGCAGGGATG+AGG | 0.558277 | 2.4:-75590048 | MS.gene072012:intron |
| CATAATGAGAATGTTACAGT+TGG | 0.579792 | 2.4:-75590600 | MS.gene072012:CDS |
| TAAGACGTATCAAATTCTCA+TGG | 0.580213 | 2.4:+75590178 | None:intergenic |
| CCTTGACAGACAAGGTGGGT+TGG | 0.587584 | 2.4:+75591519 | None:intergenic |
| TGAATCAACAAATGCAAGAG+TGG | 0.591154 | 2.4:-75590017 | MS.gene072012:CDS |
| GAGAAAGCTAGAAGGATCAG+TGG | 0.595148 | 2.4:-75590208 | MS.gene072012:CDS |
| GTTGCTCAGAATCATGGAGG+TGG | 0.597042 | 2.4:-75590525 | MS.gene072012:CDS |
| TATTATTAATCAGGGAAGCA+GGG | 0.610388 | 2.4:-75590054 | MS.gene072012:intron |
| CAACAAATGCAAGAGTGGCA+TGG | 0.610619 | 2.4:-75590012 | MS.gene072012:CDS |
| CCAACCCACCTTGTCTGTCA+AGG | 0.635683 | 2.4:-75591519 | MS.gene072012:intron |
| TGCTAGAAAAGAAAAGATTG+AGG | 0.649833 | 2.4:-75590442 | MS.gene072012:intron |
| ATGTACCTTGACAGACAAGG+TGG | 0.656190 | 2.4:+75591514 | None:intergenic |
| AAAGCTAGAAGGATCAGTGG+AGG | 0.667237 | 2.4:-75590205 | MS.gene072012:CDS |
| TGGGTTGCTCAGAATCATGG+AGG | 0.682301 | 2.4:-75590528 | MS.gene072012:CDS |
| AAAATGTACCTTGACAGACA+AGG | 0.703385 | 2.4:+75591511 | None:intergenic |
| TGTACCTTGACAGACAAGGT+GGG | 0.712167 | 2.4:+75591515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTATTGAGTAAAAG+AGG | + | chr2.4:75591492-75591511 | None:intergenic | 15.0% |
| !!! | TGGGTTTATTTTTTTTTTTT+AGG | - | chr2.4:75590953-75590972 | MS.gene072012:intron | 15.0% |
| !!! | TTAATTTCATTATGTGTTTT+GGG | - | chr2.4:75590228-75590247 | MS.gene072012:CDS | 15.0% |
| !!! | TTTAATTTCATTATGTGTTT+TGG | - | chr2.4:75590227-75590246 | MS.gene072012:CDS | 15.0% |
| !!! | TTTTGGTATATTATTAATCA+GGG | - | chr2.4:75591543-75591562 | MS.gene072012:CDS | 15.0% |
| !!! | TTTTTGGTATATTATTAATC+AGG | - | chr2.4:75591542-75591561 | MS.gene072012:CDS | 15.0% |
| !! | ACAATCTATTGAATTGTAAT+TGG | - | chr2.4:75590835-75590854 | MS.gene072012:intron | 20.0% |
| !! | ATGTCAAATATAAAGTCATT+TGG | - | chr2.4:75591213-75591232 | MS.gene072012:intron | 20.0% |
| !!! | TAACAAAATCATAGTGATTT+TGG | - | chr2.4:75590670-75590689 | MS.gene072012:intron | 20.0% |
| !!! | TTACTTTAAGACTAAAAATG+AGG | - | chr2.4:75590729-75590748 | MS.gene072012:intron | 20.0% |
| ! | AACACACTACACTTAAAATA+AGG | + | chr2.4:75590904-75590923 | None:intergenic | 25.0% |
| ! | AATTTCTTCAGAAACACATT+TGG | + | chr2.4:75590010-75590029 | None:intergenic | 25.0% |
| ! | ATGAATCTTGATTGGAAAAT+TGG | - | chr2.4:75591113-75591132 | MS.gene072012:intron | 25.0% |
| ! | ATTGAATTGTAATTGGAGAA+TGG | - | chr2.4:75590842-75590861 | MS.gene072012:intron | 25.0% |
| ! | CTATGAAAGAAAATGGAAAA+GGG | + | chr2.4:75590148-75590167 | None:intergenic | 25.0% |
| ! | TGATGAATATTGTTTCCATA+TGG | + | chr2.4:75590987-75591006 | None:intergenic | 25.0% |
| ! | TTAAACGTGATTGATGTTTA+GGG | - | chr2.4:75591359-75591378 | MS.gene072012:intron | 25.0% |
| ! | TTCTCCTTATGATACAATAA+AGG | - | chr2.4:75590170-75590189 | MS.gene072012:intron | 25.0% |
| ! | TTGATTATGTTAGTGCATTT+CGG | - | chr2.4:75590299-75590318 | MS.gene072012:intron | 25.0% |
| ! | TTGTATTGTTAGTGTATGTT+TGG | - | chr2.4:75590633-75590652 | MS.gene072012:CDS | 25.0% |
| !!! | AAATCGCTTTTGTAAAATCA+CGG | - | chr2.4:75590549-75590568 | MS.gene072012:CDS | 25.0% |
| !!! | ATGGTTTAGTTTTATGTCTT+TGG | - | chr2.4:75591612-75591631 | MS.gene072012:CDS | 25.0% |
| !!! | TGGTTTAGTTTTATGTCTTT+GGG | - | chr2.4:75591613-75591632 | MS.gene072012:CDS | 25.0% |
| ATATTATTAATCAGGGAAGC+AGG | - | chr2.4:75591550-75591569 | MS.gene072012:CDS | 30.0% | |
| ATGTCAGTATGAATCTTGAT+TGG | - | chr2.4:75591105-75591124 | MS.gene072012:intron | 30.0% | |
| CACTCCTTTATTGTATCATA+AGG | + | chr2.4:75590177-75590196 | None:intergenic | 30.0% | |
| CATAATGAGAATGTTACAGT+TGG | - | chr2.4:75591005-75591024 | MS.gene072012:intron | 30.0% | |
| CCTATGAAAGAAAATGGAAA+AGG | + | chr2.4:75590149-75590168 | None:intergenic | 30.0% | |
| GAGAAACCTATGAAAGAAAA+TGG | + | chr2.4:75590155-75590174 | None:intergenic | 30.0% | |
| GTTAAACGTGATTGATGTTT+AGG | - | chr2.4:75591358-75591377 | MS.gene072012:intron | 30.0% | |
| TAAGACGTATCAAATTCTCA+TGG | + | chr2.4:75591430-75591449 | None:intergenic | 30.0% | |
| TAATAATGTAAGTGCGTGTT+TGG | + | chr2.4:75590712-75590731 | None:intergenic | 30.0% | |
| TATTATTAATCAGGGAAGCA+GGG | - | chr2.4:75591551-75591570 | MS.gene072012:CDS | 30.0% | |
| TCTTCAATTATAACATGTCG+CGG | - | chr2.4:75590778-75590797 | MS.gene072012:intron | 30.0% | |
| TGAGAATTTGATACGTCTTA+AGG | - | chr2.4:75591430-75591449 | MS.gene072012:intron | 30.0% | |
| TGATTATGTTAGTGCATTTC+GGG | - | chr2.4:75590300-75590319 | MS.gene072012:intron | 30.0% | |
| TGCTAGAAAAGAAAAGATTG+AGG | - | chr2.4:75591163-75591182 | MS.gene072012:intron | 30.0% | |
| TGTAAGTTGTCCAAGATAAA+AGG | - | chr2.4:75591261-75591280 | MS.gene072012:intron | 30.0% | |
| TTCTACCATCAAAACATCAT+AGG | + | chr2.4:75590263-75590282 | None:intergenic | 30.0% | |
| ! | CCTTGTCTAGAATTATCAAT+CGG | + | chr2.4:75590201-75590220 | None:intergenic | 30.0% |
| ! | CCTTTTCCATTTTCTTTCAT+AGG | - | chr2.4:75590146-75590165 | MS.gene072012:intron | 30.0% |
| ! | CGATTGATAATTCTAGACAA+GGG | - | chr2.4:75590199-75590218 | MS.gene072012:CDS | 30.0% |
| ! | CTTTCACTTACCTTTTATCT+TGG | + | chr2.4:75591274-75591293 | None:intergenic | 30.0% |
| ! | GGATTCATGATTTTACATTG+CGG | - | chr2.4:75590586-75590605 | MS.gene072012:CDS | 30.0% |
| !! | ATCTATCTTGGTGTCATTAA+TGG | - | chr2.4:75590408-75590427 | MS.gene072012:intron | 30.0% |
| !!! | GATGTTTTGATGGTAGAATA+GGG | - | chr2.4:75590265-75590284 | MS.gene072012:intron | 30.0% |
| !!! | TCAGAATAACGTTGTTGTTT+TGG | - | chr2.4:75590029-75590048 | MS.gene072012:CDS | 30.0% |
| !!! | TGATGTTTTGATGGTAGAAT+AGG | - | chr2.4:75590264-75590283 | MS.gene072012:intron | 30.0% |
| AAAATGTACCTTGACAGACA+AGG | + | chr2.4:75590097-75590116 | None:intergenic | 35.0% | |
| AAACACATTGTCATTGCATC+TGG | - | chr2.4:75590373-75590392 | MS.gene072012:intron | 35.0% | |
| AATCACGGTTAACACAATTG+TGG | - | chr2.4:75590564-75590583 | MS.gene072012:CDS | 35.0% | |
| ATCACGGTTAACACAATTGT+GGG | - | chr2.4:75590565-75590584 | MS.gene072012:CDS | 35.0% | |
| ATTTGATACGTCTTAAGGAC+AGG | - | chr2.4:75591435-75591454 | MS.gene072012:intron | 35.0% | |
| CATTAATGGCCCAGATTTAA+TGG | - | chr2.4:75590422-75590441 | MS.gene072012:intron | 35.0% | |
| CTTCAATTATAACATGTCGC+GGG | - | chr2.4:75590779-75590798 | MS.gene072012:intron | 35.0% | |
| GAGACATTCGATCGTTAAAT+GGG | - | chr2.4:75590934-75590953 | MS.gene072012:intron | 35.0% | |
| TGAACTTATCGTGAAATGCA+CGG | + | chr2.4:75590472-75590491 | None:intergenic | 35.0% | |
| TGAATCAACAAATGCAAGAG+TGG | - | chr2.4:75591588-75591607 | MS.gene072012:CDS | 35.0% | |
| TGAGACATTCGATCGTTAAA+TGG | - | chr2.4:75590933-75590952 | MS.gene072012:intron | 35.0% | |
| TTAGTGTATGTTTGGATGAG+TGG | - | chr2.4:75590641-75590660 | MS.gene072012:intron | 35.0% | |
| TTTAACGATCGAATGTCTCA+AGG | + | chr2.4:75590933-75590952 | None:intergenic | 35.0% | |
| TTTGTGTGACCCAGATTTAA+TGG | + | chr2.4:75590356-75590375 | None:intergenic | 35.0% | |
| ! | CCGATTGATAATTCTAGACA+AGG | - | chr2.4:75590198-75590217 | MS.gene072012:CDS | 35.0% |
| ! | TTGATGGTAGAATAGGGTTT+AGG | - | chr2.4:75590271-75590290 | MS.gene072012:intron | 35.0% |
| !! | TGTGACCTATGATGTTTTGA+TGG | - | chr2.4:75590255-75590274 | MS.gene072012:intron | 35.0% |
| !! | TTTTAGGTGACATCACCATA+TGG | - | chr2.4:75590969-75590988 | MS.gene072012:intron | 35.0% |
| ACCAAGATAGATGTGTTGTG+TGG | + | chr2.4:75590400-75590419 | None:intergenic | 40.0% | |
| ACCACACAACACATCTATCT+TGG | - | chr2.4:75590396-75590415 | MS.gene072012:intron | 40.0% | |
| ATGGTAGAATAGGGTTTAGG+TGG | - | chr2.4:75590274-75590293 | MS.gene072012:intron | 40.0% | |
| CCTTTACAACTTCAGAGAGT+GGG | - | chr2.4:75591036-75591055 | MS.gene072012:intron | 40.0% | |
| GAACTACATTGCATGCTTCT+GGG | - | chr2.4:75591058-75591077 | MS.gene072012:intron | 40.0% | |
| GAACTTATCGTGAAATGCAC+GGG | + | chr2.4:75590471-75590490 | None:intergenic | 40.0% | |
| TCTCAGCATGTCATGCTATA+TGG | - | chr2.4:75589962-75589981 | MS.gene072012:CDS | 40.0% | |
| TGATAATTCTAGACAAGGGC+TGG | - | chr2.4:75590203-75590222 | MS.gene072012:CDS | 40.0% | |
| TGTCGCGGGAAATAAATTGT+CGG | - | chr2.4:75590793-75590812 | MS.gene072012:intron | 40.0% | |
| ! | CAGTTTCAGTTTTGCAGTTG+TGG | - | chr2.4:75591647-75591666 | MS.gene072012:CDS | 40.0% |
| ! | CATACCGTGCCATTAAATCT+GGG | + | chr2.4:75590434-75590453 | None:intergenic | 40.0% |
| ! | TAGCTTTTGCAAAACCGTTG+TGG | + | chr2.4:75590511-75590530 | None:intergenic | 40.0% |
| !! | CTTGAGTTGAGAAAGCTAGA+AGG | - | chr2.4:75591389-75591408 | MS.gene072012:intron | 40.0% |
| !! | GGTTGGTTTGATCGATCAAT+CGG | + | chr2.4:75590072-75590091 | None:intergenic | 40.0% |
| !! | TAGCACTTTGGTGCCATTAA+TGG | - | chr2.4:75590323-75590342 | MS.gene072012:intron | 40.0% |
| AAAGCTAGAAGGATCAGTGG+AGG | - | chr2.4:75591400-75591419 | MS.gene072012:intron | 45.0% | |
| AGCAACTGAATCCCAATCCT+TGG | + | chr2.4:75591147-75591166 | None:intergenic | 45.0% | |
| ATGGCCCAGATTTAATGGCA+CGG | - | chr2.4:75590427-75590446 | MS.gene072012:intron | 45.0% | |
| ATGTACCTTGACAGACAAGG+TGG | + | chr2.4:75590094-75590113 | None:intergenic | 45.0% | |
| CAACAAATGCAAGAGTGGCA+TGG | - | chr2.4:75591593-75591612 | MS.gene072012:CDS | 45.0% | |
| CCAGATTTAATGGCACGGTA+TGG | - | chr2.4:75590432-75590451 | MS.gene072012:intron | 45.0% | |
| GAAAATTGGAGTTGCAGCCA+AGG | - | chr2.4:75591127-75591146 | MS.gene072012:intron | 45.0% | |
| GAGAAAGCTAGAAGGATCAG+TGG | - | chr2.4:75591397-75591416 | MS.gene072012:intron | 45.0% | |
| GCCTTTACAACTTCAGAGAG+TGG | - | chr2.4:75591035-75591054 | MS.gene072012:intron | 45.0% | |
| GGAACTACATTGCATGCTTC+TGG | - | chr2.4:75591057-75591076 | MS.gene072012:intron | 45.0% | |
| GTGACCCAGATTTAATGGCA+CGG | + | chr2.4:75590351-75590370 | None:intergenic | 45.0% | |
| TGGATCTCATTACCTGCTTC+AGG | - | chr2.4:75589982-75590001 | MS.gene072012:CDS | 45.0% | |
| TGTACCTTGACAGACAAGGT+GGG | + | chr2.4:75590093-75590112 | None:intergenic | 45.0% | |
| TTCTGGGTTGCTCAGAATCA+TGG | - | chr2.4:75591074-75591093 | MS.gene072012:intron | 45.0% | |
| ! | ACACATTTGGTTCCTGAAGC+AGG | + | chr2.4:75589997-75590016 | None:intergenic | 45.0% |
| ! | CCATACCGTGCCATTAAATC+TGG | + | chr2.4:75590435-75590454 | None:intergenic | 45.0% |
| ! | GTGCGTGTTTGGATTTTCGA+TGG | + | chr2.4:75590701-75590720 | None:intergenic | 45.0% |
| !! | CCCACTCTCTGAAGTTGTAA+AGG | + | chr2.4:75591039-75591058 | None:intergenic | 45.0% |
| !! | TAATGGCACGGTGCCATTAA+TGG | + | chr2.4:75590339-75590358 | None:intergenic | 45.0% |
| !!! | GTTATATATTAATTATTTTT+TGG | - | chr2.4:75591526-75591545 | MS.gene072012:CDS | 5.0% |
| GAAATGCACGGGTAGCACTT+TGG | + | chr2.4:75590460-75590479 | None:intergenic | 50.0% | |
| GTTGCTCAGAATCATGGAGG+TGG | - | chr2.4:75591080-75591099 | MS.gene072012:intron | 50.0% | |
| TAATCAGGGAAGCAGGGATG+AGG | - | chr2.4:75591557-75591576 | MS.gene072012:CDS | 50.0% | |
| TGGAGTTGCAGCCAAGGATT+GGG | - | chr2.4:75591133-75591152 | MS.gene072012:intron | 50.0% | |
| TGGGTTGCTCAGAATCATGG+AGG | - | chr2.4:75591077-75591096 | MS.gene072012:intron | 50.0% | |
| TTGGAGTTGCAGCCAAGGAT+TGG | - | chr2.4:75591132-75591151 | MS.gene072012:intron | 50.0% | |
| ! | GGCACCGTGCCATTAAATCT+GGG | - | chr2.4:75590344-75590363 | MS.gene072012:intron | 50.0% |
| ! | GTGCATTTCGGGTAGCACTT+TGG | - | chr2.4:75590311-75590330 | MS.gene072012:intron | 50.0% |
| ! | GTGCTGTGTCGACATTGTGT+GGG | - | chr2.4:75590751-75590770 | MS.gene072012:intron | 50.0% |
| ! | TGGCACCGTGCCATTAAATC+TGG | - | chr2.4:75590343-75590362 | MS.gene072012:intron | 50.0% |
| AGAATCGCGACGAGCCACAA+CGG | - | chr2.4:75590494-75590513 | MS.gene072012:CDS | 55.0% | |
| CCAACCCACCTTGTCTGTCA+AGG | - | chr2.4:75590086-75590105 | MS.gene072012:intron | 55.0% | |
| CCTTGACAGACAAGGTGGGT+TGG | + | chr2.4:75590089-75590108 | None:intergenic | 55.0% | |
| ! | GGTGCTGTGTCGACATTGTG+TGG | - | chr2.4:75590750-75590769 | MS.gene072012:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 75589919 | 75591708 | 75589919 | ID=MS.gene072012 |
| chr2.4 | mRNA | 75589919 | 75591708 | 75589919 | ID=MS.gene072012.t1;Parent=MS.gene072012 |
| chr2.4 | exon | 75591520 | 75591708 | 75591520 | ID=MS.gene072012.t1.exon1;Parent=MS.gene072012.t1 |
| chr2.4 | CDS | 75591520 | 75591708 | 75591520 | ID=cds.MS.gene072012.t1;Parent=MS.gene072012.t1 |
| chr2.4 | exon | 75590443 | 75590652 | 75590443 | ID=MS.gene072012.t1.exon2;Parent=MS.gene072012.t1 |
| chr2.4 | CDS | 75590443 | 75590652 | 75590443 | ID=cds.MS.gene072012.t1;Parent=MS.gene072012.t1 |
| chr2.4 | exon | 75590171 | 75590247 | 75590171 | ID=MS.gene072012.t1.exon3;Parent=MS.gene072012.t1 |
| chr2.4 | CDS | 75590171 | 75590247 | 75590171 | ID=cds.MS.gene072012.t1;Parent=MS.gene072012.t1 |
| chr2.4 | exon | 75589919 | 75590063 | 75589919 | ID=MS.gene072012.t1.exon4;Parent=MS.gene072012.t1 |
| chr2.4 | CDS | 75589919 | 75590063 | 75589919 | ID=cds.MS.gene072012.t1;Parent=MS.gene072012.t1 |
| Gene Sequence |
| Protein sequence |
