Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67216.t1 | XP_003629981.1 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.40E-112 | 415.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67216.t1 | Q6IDL4 | 67.1 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 7.1e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67216.t1 | G7L9I3 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 9.8e-113 | 415.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052793 | MS.gene67216 | 0.803572 | 3.27E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene67216 | 0.802467 | 5.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27948 | MS.gene67216 | PPI |
| MS.gene67216 | MS.gene045327 | PPI |
| MS.gene002097 | MS.gene67216 | PPI |
| MS.gene47907 | MS.gene67216 | PPI |
| MS.gene75647 | MS.gene67216 | PPI |
| MS.gene77559 | MS.gene67216 | PPI |
| MS.gene031477 | MS.gene67216 | PPI |
| MS.gene96773 | MS.gene67216 | PPI |
| MS.gene67216 | MS.gene030925 | PPI |
| MS.gene79918 | MS.gene67216 | PPI |
| MS.gene67216 | MS.gene072012 | PPI |
| MS.gene047149 | MS.gene67216 | PPI |
| MS.gene67216 | MS.gene56516 | PPI |
| MS.gene67216 | MS.gene96773 | PPI |
| MS.gene006810 | MS.gene67216 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67216.t1 | MTR_8g088940 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.33e-154 | 427 |
| MS.gene67216.t1 | MTR_2g007210 | 72.642 | 212 | 51 | 3 | 1 | 211 | 1 | 206 | 6.70e-111 | 316 |
| MS.gene67216.t1 | MTR_8g088980 | 92.994 | 157 | 11 | 0 | 55 | 211 | 6 | 162 | 4.01e-106 | 302 |
| MS.gene67216.t1 | MTR_3g072600 | 65.877 | 211 | 68 | 2 | 3 | 211 | 9 | 217 | 1.02e-100 | 291 |
| MS.gene67216.t1 | MTR_5g058140 | 70.213 | 188 | 53 | 2 | 24 | 211 | 28 | 212 | 2.89e-93 | 271 |
| MS.gene67216.t1 | MTR_4g082315 | 41.919 | 198 | 102 | 3 | 22 | 211 | 24 | 216 | 7.51e-55 | 174 |
| MS.gene67216.t1 | MTR_6g012770 | 40.306 | 196 | 105 | 2 | 24 | 211 | 21 | 212 | 6.75e-53 | 169 |
| MS.gene67216.t1 | MTR_7g011490 | 39.796 | 196 | 105 | 3 | 24 | 211 | 22 | 212 | 5.82e-48 | 156 |
| MS.gene67216.t1 | MTR_5g042260 | 34.579 | 214 | 126 | 4 | 8 | 211 | 10 | 219 | 2.70e-42 | 142 |
| MS.gene67216.t1 | MTR_5g042270 | 34.831 | 178 | 112 | 3 | 35 | 211 | 11 | 185 | 2.26e-32 | 115 |
| MS.gene67216.t1 | MTR_5g042320 | 33.023 | 215 | 129 | 5 | 8 | 211 | 13 | 223 | 3.00e-31 | 114 |
| MS.gene67216.t1 | MTR_5g042320 | 30.460 | 174 | 106 | 5 | 8 | 170 | 13 | 182 | 6.98e-18 | 78.6 |
| MS.gene67216.t1 | MTR_7g095690 | 26.214 | 206 | 135 | 5 | 11 | 207 | 7 | 204 | 1.92e-14 | 69.7 |
| MS.gene67216.t1 | MTR_1g102720 | 26.486 | 185 | 127 | 4 | 27 | 207 | 27 | 206 | 2.06e-13 | 66.6 |
| MS.gene67216.t1 | MTR_5g042300 | 31.707 | 123 | 69 | 3 | 89 | 211 | 41 | 148 | 4.59e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67216.t1 | AT1G09580 | 67.150 | 207 | 67 | 1 | 6 | 211 | 11 | 217 | 2.05e-106 | 305 |
| MS.gene67216.t1 | AT1G57620 | 65.714 | 210 | 72 | 0 | 2 | 211 | 3 | 212 | 3.28e-104 | 299 |
| MS.gene67216.t1 | AT1G21900 | 70.157 | 191 | 53 | 3 | 24 | 211 | 27 | 216 | 2.86e-94 | 274 |
| MS.gene67216.t1 | AT3G10780 | 55.000 | 200 | 84 | 3 | 17 | 211 | 19 | 217 | 2.24e-69 | 211 |
| MS.gene67216.t1 | AT1G14010 | 42.857 | 210 | 112 | 5 | 7 | 211 | 6 | 212 | 2.16e-52 | 168 |
| MS.gene67216.t1 | AT1G26690 | 39.713 | 209 | 115 | 5 | 8 | 211 | 12 | 214 | 2.86e-52 | 167 |
| MS.gene67216.t1 | AT1G69460 | 37.900 | 219 | 117 | 5 | 2 | 211 | 6 | 214 | 2.80e-48 | 157 |
| MS.gene67216.t1 | AT2G03290 | 38.384 | 198 | 114 | 3 | 20 | 211 | 18 | 213 | 8.32e-48 | 156 |
| MS.gene67216.t1 | AT3G29070 | 39.583 | 192 | 111 | 4 | 24 | 211 | 35 | 225 | 1.71e-44 | 148 |
| MS.gene67216.t1 | AT2G03040 | 35.762 | 151 | 89 | 4 | 20 | 164 | 18 | 166 | 4.42e-28 | 104 |
Find 51 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAACGACGACGTTATTC+TGG | 0.202384 | 4.2:+12429487 | None:intergenic |
| GGAACTACCTGGCATGCTTT+TGG | 0.252996 | 4.2:-12428402 | MS.gene67216:CDS |
| CCAGAATAACGTCGTCGTTT+TGG | 0.269487 | 4.2:-12429487 | MS.gene67216:CDS |
| GTGAACCTTGACTGGAAAAT+TGG | 0.288089 | 4.2:-12428343 | MS.gene67216:CDS |
| TACCTTCCACACTCGCTATC+TGG | 0.307658 | 4.2:-12429554 | MS.gene67216:CDS |
| TCAGAAGAAGAAGCTTATAT+AGG | 0.352870 | 4.2:-12427360 | None:intergenic |
| TTGGAATTGCAGCCAAGGAT+TGG | 0.404517 | 4.2:-12428324 | MS.gene67216:CDS |
| GATTTCTTCGGAGACGCATT+TGG | 0.406641 | 4.2:+12429509 | None:intergenic |
| TGGAATTGCAGCCAAGGATT+GGG | 0.419986 | 4.2:-12428323 | MS.gene67216:CDS |
| CTTGAGCTGAGAAAGCTAGA+AGG | 0.424644 | 4.2:-12427657 | MS.gene67216:CDS |
| GACGCATTTGGTACCGGTGG+TGG | 0.436098 | 4.2:+12429521 | None:intergenic |
| TTCGGAGACGCATTTGGTAC+CGG | 0.451076 | 4.2:+12429515 | None:intergenic |
| TGGTTTAGTATTATGTCGTT+AGG | 0.458318 | 4.2:-12427434 | MS.gene67216:CDS |
| TGAAAATTTGCTCTATCTGA+AGG | 0.460174 | 4.2:-12427616 | MS.gene67216:CDS |
| CTTTAGGTAACATCACCATA+TGG | 0.460528 | 4.2:-12428490 | MS.gene67216:intron |
| AGGTTAGTGTGAACCTTGAC+TGG | 0.462981 | 4.2:-12428351 | MS.gene67216:CDS |
| GAGTCTCAGCTTTGCAATTG+TGG | 0.475357 | 4.2:-12427400 | MS.gene67216:CDS |
| TTGGGACTCAGTTGCTAAGA+AGG | 0.475920 | 4.2:-12428305 | MS.gene67216:CDS |
| GACGTTATTCTGGATTTCTT+CGG | 0.476995 | 4.2:+12429497 | None:intergenic |
| TGATGAAGATTGTTTCCATA+TGG | 0.488589 | 4.2:+12428475 | None:intergenic |
| AGCAACTGAGTCCCAATCCT+TGG | 0.491833 | 4.2:+12428312 | None:intergenic |
| GGACTACGGGTATGATCATC+GGG | 0.494222 | 4.2:+12429447 | None:intergenic |
| GCATTTACGACTCAAGAGAC+TGG | 0.507558 | 4.2:-12428424 | MS.gene67216:CDS |
| TGACAGCGAGAGTGGGACTA+CGG | 0.514356 | 4.2:+12429433 | None:intergenic |
| CATCTACCCAAAAGCATGCC+AGG | 0.519642 | 4.2:+12428395 | None:intergenic |
| CATTACCTTGACAGCGAGAG+TGG | 0.529347 | 4.2:+12429425 | None:intergenic |
| CACAAAGAGAACACAACACA+TGG | 0.530469 | 4.2:-12428454 | MS.gene67216:CDS |
| AAAGCTAGAAGGAGCTGTAG+AGG | 0.537093 | 4.2:-12427646 | MS.gene67216:CDS |
| AGCCAGATAGCGAGTGTGGA+AGG | 0.543450 | 4.2:+12429552 | None:intergenic |
| GGGACTACGGGTATGATCAT+CGG | 0.549429 | 4.2:+12429446 | None:intergenic |
| ATTTGCTCTATCTGAAGGGA+AGG | 0.554587 | 4.2:-12427611 | MS.gene67216:intron |
| GAAAATTGGAATTGCAGCCA+AGG | 0.558923 | 4.2:-12428329 | MS.gene67216:CDS |
| CGTAAGCCAGATAGCGAGTG+TGG | 0.559231 | 4.2:+12429548 | None:intergenic |
| GATTGATTGAGAAGATGCAG+AGG | 0.562203 | 4.2:+12429580 | None:intergenic |
| TCAAGAGACTGGGAACTACC+TGG | 0.566601 | 4.2:-12428413 | MS.gene67216:CDS |
| GAAAATTTGCTCTATCTGAA+GGG | 0.566763 | 4.2:-12427615 | MS.gene67216:CDS |
| CATTTACGACTCAAGAGACT+GGG | 0.567095 | 4.2:-12428423 | MS.gene67216:CDS |
| GACAGCGAGAGTGGGACTAC+GGG | 0.568049 | 4.2:+12429434 | None:intergenic |
| TAGTCCCACTCTCGCTGTCA+AGG | 0.570992 | 4.2:-12429430 | MS.gene67216:intron |
| ATCGTGAGTGAAAGAACAAA+CGG | 0.572432 | 4.2:-12427467 | MS.gene67216:CDS |
| ACGCATTTGGTACCGGTGGT+GGG | 0.588544 | 4.2:+12429522 | None:intergenic |
| TGGCTTACGTTACCCACCAC+CGG | 0.590818 | 4.2:-12429534 | MS.gene67216:CDS |
| TGCTAAGAAGGAGAAGATTG+AGG | 0.593000 | 4.2:-12428293 | MS.gene67216:intron |
| GAACAAACGGCAGAGTGGCA+TGG | 0.610011 | 4.2:-12427454 | MS.gene67216:CDS |
| TGTTCAGGGAAGCAGAGATG+AGG | 0.614511 | 4.2:-12427490 | MS.gene67216:intron |
| ATGTCGTTAGGTATCTGCAT+TGG | 0.618449 | 4.2:-12427422 | MS.gene67216:CDS |
| ATTACCTTGACAGCGAGAGT+GGG | 0.651605 | 4.2:+12429426 | None:intergenic |
| GGAGACGCATTTGGTACCGG+TGG | 0.661357 | 4.2:+12429518 | None:intergenic |
| GGGTAATCAAGGAGGTCACG+AGG | 0.668890 | 4.2:-12428371 | MS.gene67216:CDS |
| TGAAAGAACAAACGGCAGAG+TGG | 0.682661 | 4.2:-12427459 | MS.gene67216:CDS |
| ACAAAGAGAACACAACACAT+GGG | 0.726810 | 4.2:-12428453 | MS.gene67216:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAAAATGTAATCTTTT+GGG | - | chr4.2:12428842-12428861 | MS.gene67216:intron | 10.0% |
| !!! | CATTATAAAATGTAATCTTT+TGG | - | chr4.2:12428841-12428860 | MS.gene67216:intron | 15.0% |
| !! | AATTGACGTAATTAGTAATA+TGG | - | chr4.2:12427776-12427795 | MS.gene67216:intron | 20.0% |
| !! | AGAGATATAGATTTAAATTC+AGG | + | chr4.2:12429218-12429237 | None:intergenic | 20.0% |
| !! | ATCCAAAAACAAAACAAAAT+AGG | + | chr4.2:12428034-12428053 | None:intergenic | 20.0% |
| !!! | CATTGTTATATGTCTATTTT+TGG | - | chr4.2:12428078-12428097 | MS.gene67216:intron | 20.0% |
| !!! | CTGATAACAATTTGTTAAAA+TGG | - | chr4.2:12428437-12428456 | MS.gene67216:CDS | 20.0% |
| !!! | TAACTTGTAATGTTTTCTTT+AGG | - | chr4.2:12428464-12428483 | MS.gene67216:CDS | 20.0% |
| !!! | TTGGAAAATATTTCTGTTTA+GGG | - | chr4.2:12428981-12429000 | MS.gene67216:intron | 20.0% |
| ! | AAGTATGAAAGAATCCAAAT+CGG | + | chr4.2:12428886-12428905 | None:intergenic | 25.0% |
| ! | ACAGAGTAAAGATCAATTTA+TGG | + | chr4.2:12428145-12428164 | None:intergenic | 25.0% |
| ! | ATGAATAATTGATTATGCTG+AGG | - | chr4.2:12429091-12429110 | MS.gene67216:intron | 25.0% |
| ! | ATTAATTGTCAGCTATTGAA+AGG | + | chr4.2:12428729-12428748 | None:intergenic | 25.0% |
| ! | CCACGAAATTAAAATGAAAA+GGG | + | chr4.2:12427592-12427611 | None:intergenic | 25.0% |
| ! | GTATCAATCACATATAGAAA+CGG | + | chr4.2:12429280-12429299 | None:intergenic | 25.0% |
| ! | GTTGATCAACAAAAGAAATT+AGG | + | chr4.2:12427942-12427961 | None:intergenic | 25.0% |
| ! | TATAGATTTAAATTCAGGTG+CGG | + | chr4.2:12429213-12429232 | None:intergenic | 25.0% |
| ! | TTCAAATGAAAATGTCATAG+TGG | - | chr4.2:12428396-12428415 | MS.gene67216:CDS | 25.0% |
| ! | TTGGATATATTAATCGATGA+GGG | - | chr4.2:12428048-12428067 | MS.gene67216:intron | 25.0% |
| ! | TTTGGATATATTAATCGATG+AGG | - | chr4.2:12428047-12428066 | MS.gene67216:intron | 25.0% |
| !! | GTTGGAAAATATTTCTGTTT+AGG | - | chr4.2:12428980-12428999 | MS.gene67216:intron | 25.0% |
| !!! | ATTTGTTGATGATCACAAAA+TGG | - | chr4.2:12427850-12427869 | MS.gene67216:intron | 25.0% |
| !!! | CCTTTTCATTTTAATTTCGT+GGG | - | chr4.2:12427590-12427609 | MS.gene67216:intron | 25.0% |
| !!! | GACCTATTTTGTTTTGTTTT+TGG | - | chr4.2:12428029-12428048 | MS.gene67216:intron | 25.0% |
| !!! | GTTCAAGCATTGTTTTAAAA+TGG | - | chr4.2:12428782-12428801 | MS.gene67216:intron | 25.0% |
| !!! | GTTCTTTTGATTGTAGAAAA+TGG | - | chr4.2:12428218-12428237 | MS.gene67216:intron | 25.0% |
| AACCAAACAAATCAGAACAA+TGG | + | chr4.2:12427658-12427677 | None:intergenic | 30.0% | |
| AAGATTGAGGTAAGTAGATA+TGG | - | chr4.2:12428690-12428709 | MS.gene67216:intron | 30.0% | |
| AGATCCATCATTATTGATGT+CGG | + | chr4.2:12428949-12428968 | None:intergenic | 30.0% | |
| AGCTGACAATTAATTACTCA+AGG | - | chr4.2:12428735-12428754 | MS.gene67216:intron | 30.0% | |
| ATGGTTTACTACATTTCTTG+AGG | + | chr4.2:12429121-12429140 | None:intergenic | 30.0% | |
| CCCACGAAATTAAAATGAAA+AGG | + | chr4.2:12427593-12427612 | None:intergenic | 30.0% | |
| CTATATGTGATTGATACCTA+GGG | - | chr4.2:12429283-12429302 | MS.gene67216:intron | 30.0% | |
| GACGTAATTAGTAATATGGA+TGG | - | chr4.2:12427780-12427799 | MS.gene67216:intron | 30.0% | |
| TATATCTCTTCTGTTTGCTT+TGG | - | chr4.2:12429229-12429248 | MS.gene67216:intron | 30.0% | |
| TCTATATGTGATTGATACCT+AGG | - | chr4.2:12429282-12429301 | MS.gene67216:intron | 30.0% | |
| TGATGAAGATTGTTTCCATA+TGG | + | chr4.2:12428498-12428517 | None:intergenic | 30.0% | |
| TGGATCTTCTTACTATATGT+TGG | - | chr4.2:12428962-12428981 | MS.gene67216:intron | 30.0% | |
| TGGTTTAGTATTATGTCGTT+AGG | - | chr4.2:12429536-12429555 | MS.gene67216:CDS | 30.0% | |
| ! | AAGTAACTATAGTCTTGAGA+TGG | + | chr4.2:12429148-12429167 | None:intergenic | 30.0% |
| ! | ATAGAGCAAATTTTCATGGA+TGG | + | chr4.2:12429350-12429369 | None:intergenic | 30.0% |
| ! | ATAGTCTTGAGATGGAAAAA+TGG | + | chr4.2:12429140-12429159 | None:intergenic | 30.0% |
| ! | ATGCATTTTTATATTGTCCG+TGG | - | chr4.2:12427987-12428006 | MS.gene67216:intron | 30.0% |
| ! | GAAAATTTGCTCTATCTGAA+GGG | - | chr4.2:12429355-12429374 | MS.gene67216:intron | 30.0% |
| ! | TCAGATAGAGCAAATTTTCA+TGG | + | chr4.2:12429354-12429373 | None:intergenic | 30.0% |
| ! | TGAAAATTTGCTCTATCTGA+AGG | - | chr4.2:12429354-12429373 | MS.gene67216:intron | 30.0% |
| ! | TTGACATTGTTCTTCTGTTT+TGG | - | chr4.2:12427697-12427716 | MS.gene67216:intron | 30.0% |
| !! | TCTGATTTGTTTGGTTTCTA+GGG | - | chr4.2:12427662-12427681 | MS.gene67216:CDS | 30.0% |
| !! | TTCCATTGTTCTGATTTGTT+TGG | - | chr4.2:12427653-12427672 | MS.gene67216:CDS | 30.0% |
| !! | TTCTGATTTGTTTGGTTTCT+AGG | - | chr4.2:12427661-12427680 | MS.gene67216:CDS | 30.0% |
| !!! | ATATTTTGTGCTGTTTGTTC+AGG | - | chr4.2:12429465-12429484 | MS.gene67216:CDS | 30.0% |
| !!! | CCCTTTTCATTTTAATTTCG+TGG | - | chr4.2:12427589-12427608 | MS.gene67216:intron | 30.0% |
| !!! | TATTTTGTGCTGTTTGTTCA+GGG | - | chr4.2:12429466-12429485 | MS.gene67216:CDS | 30.0% |
| ACAAAGAGAACACAACACAT+GGG | - | chr4.2:12428517-12428536 | MS.gene67216:intron | 35.0% | |
| ATCGTGAGTGAAAGAACAAA+CGG | - | chr4.2:12429503-12429522 | MS.gene67216:CDS | 35.0% | |
| CTTTAGGTAACATCACCATA+TGG | - | chr4.2:12428480-12428499 | MS.gene67216:CDS | 35.0% | |
| GACGTTATTCTGGATTTCTT+CGG | + | chr4.2:12427476-12427495 | None:intergenic | 35.0% | |
| GATCCATCATTATTGATGTC+GGG | + | chr4.2:12428948-12428967 | None:intergenic | 35.0% | |
| GCAAGAAAATTGATCCGATT+TGG | - | chr4.2:12428869-12428888 | MS.gene67216:intron | 35.0% | |
| TCATGACTTTCAGATCGTAT+CGG | + | chr4.2:12428359-12428378 | None:intergenic | 35.0% | |
| TCTCGTGTAACATGAAAGTA+AGG | - | chr4.2:12429179-12429198 | MS.gene67216:intron | 35.0% | |
| TTTCATGTTACACGAGAGAA+TGG | + | chr4.2:12429176-12429195 | None:intergenic | 35.0% | |
| ! | CAATTCCAATTTTCCAGTCA+AGG | + | chr4.2:12428635-12428654 | None:intergenic | 35.0% |
| ! | TTTTTATATTGTCCGTGGTG+TGG | - | chr4.2:12427992-12428011 | MS.gene67216:intron | 35.0% |
| !!! | GTTCTTCTGTTTTGGTCAAT+TGG | - | chr4.2:12427705-12427724 | MS.gene67216:intron | 35.0% |
| !!! | TTCTGTTTTGGTCAATTGGT+GGG | - | chr4.2:12427709-12427728 | MS.gene67216:intron | 35.0% |
| ATATACCGCTCACATACATG+TGG | - | chr4.2:12428253-12428272 | MS.gene67216:intron | 40.0% | |
| ATGTCGTTAGGTATCTGCAT+TGG | - | chr4.2:12429548-12429567 | MS.gene67216:CDS | 40.0% | |
| ATTTGCTCTATCTGAAGGGA+AGG | - | chr4.2:12429359-12429378 | MS.gene67216:intron | 40.0% | |
| CACAAAGAGAACACAACACA+TGG | - | chr4.2:12428516-12428535 | MS.gene67216:intron | 40.0% | |
| CATTTACGACTCAAGAGACT+GGG | - | chr4.2:12428547-12428566 | MS.gene67216:intron | 40.0% | |
| CTAGAAGTTGTTGACGTGAT+TGG | + | chr4.2:12429393-12429412 | None:intergenic | 40.0% | |
| GAAAATTGGAATTGCAGCCA+AGG | - | chr4.2:12428641-12428660 | MS.gene67216:intron | 40.0% | |
| GATTGATTGAGAAGATGCAG+AGG | + | chr4.2:12427393-12427412 | None:intergenic | 40.0% | |
| GTACCCGACATCAATAATGA+TGG | - | chr4.2:12428942-12428961 | MS.gene67216:intron | 40.0% | |
| GTGAACCTTGACTGGAAAAT+TGG | - | chr4.2:12428627-12428646 | MS.gene67216:intron | 40.0% | |
| TACGAAAATGTCTTGCACGT+TGG | - | chr4.2:12428297-12428316 | MS.gene67216:CDS | 40.0% | |
| TGCTAAGAAGGAGAAGATTG+AGG | - | chr4.2:12428677-12428696 | MS.gene67216:intron | 40.0% | |
| TGTGGATTCGATTTAGTCGT+TGG | - | chr4.2:12428271-12428290 | MS.gene67216:intron | 40.0% | |
| ! | TGTCCAGTTCTGTCTTTTGA+GGG | - | chr4.2:12428174-12428193 | MS.gene67216:intron | 40.0% |
| !!! | CTTCTGTTTTGGTCAATTGG+TGG | - | chr4.2:12427708-12427727 | MS.gene67216:intron | 40.0% |
| AAAGCTAGAAGGAGCTGTAG+AGG | - | chr4.2:12429324-12429343 | MS.gene67216:intron | 45.0% | |
| AGGTTAGTGTGAACCTTGAC+TGG | - | chr4.2:12428619-12428638 | MS.gene67216:intron | 45.0% | |
| AGTACTATGACACCACACCA+CGG | + | chr4.2:12428007-12428026 | None:intergenic | 45.0% | |
| ATCCCCTCAAAAGACAGAAC+TGG | + | chr4.2:12428180-12428199 | None:intergenic | 45.0% | |
| ATTACCTTGACAGCGAGAGT+GGG | + | chr4.2:12427547-12427566 | None:intergenic | 45.0% | |
| CCAAAACGACGACGTTATTC+TGG | + | chr4.2:12427486-12427505 | None:intergenic | 45.0% | |
| CGAATCCACATGTATGTGAG+CGG | + | chr4.2:12428261-12428280 | None:intergenic | 45.0% | |
| CTTGAGCTGAGAAAGCTAGA+AGG | - | chr4.2:12429313-12429332 | MS.gene67216:intron | 45.0% | |
| GAGTCTCAGCTTTGCAATTG+TGG | - | chr4.2:12429570-12429589 | MS.gene67216:CDS | 45.0% | |
| GATTTCTTCGGAGACGCATT+TGG | + | chr4.2:12427464-12427483 | None:intergenic | 45.0% | |
| GCATTTACGACTCAAGAGAC+TGG | - | chr4.2:12428546-12428565 | MS.gene67216:intron | 45.0% | |
| TGAAAGAACAAACGGCAGAG+TGG | - | chr4.2:12429511-12429530 | MS.gene67216:CDS | 45.0% | |
| TGGAATTGCAGCCAAGGATT+GGG | - | chr4.2:12428647-12428666 | MS.gene67216:intron | 45.0% | |
| TTGGAATTGCAGCCAAGGAT+TGG | - | chr4.2:12428646-12428665 | MS.gene67216:intron | 45.0% | |
| TTGGGACTCAGTTGCTAAGA+AGG | - | chr4.2:12428665-12428684 | MS.gene67216:intron | 45.0% | |
| ! | CCAGAATAACGTCGTCGTTT+TGG | - | chr4.2:12427483-12427502 | MS.gene67216:CDS | 45.0% |
| ! | CTGTCCAGTTCTGTCTTTTG+AGG | - | chr4.2:12428173-12428192 | MS.gene67216:intron | 45.0% |
| ! | GAACTACCTGGCATGCTTTT+GGG | - | chr4.2:12428569-12428588 | MS.gene67216:intron | 45.0% |
| ! | GTCCAGTTCTGTCTTTTGAG+GGG | - | chr4.2:12428175-12428194 | MS.gene67216:intron | 45.0% |
| !! | TGGCATGCTTTTGGGTAGAT+GGG | - | chr4.2:12428577-12428596 | MS.gene67216:intron | 45.0% |
| AGATCAAACCTACGCTGCTC+AGG | + | chr4.2:12428106-12428125 | None:intergenic | 50.0% | |
| AGCAACTGAGTCCCAATCCT+TGG | + | chr4.2:12428661-12428680 | None:intergenic | 50.0% | |
| CATTACCTTGACAGCGAGAG+TGG | + | chr4.2:12427548-12427567 | None:intergenic | 50.0% | |
| GGACTACGGGTATGATCATC+GGG | + | chr4.2:12427526-12427545 | None:intergenic | 50.0% | |
| GGGACTACGGGTATGATCAT+CGG | + | chr4.2:12427527-12427546 | None:intergenic | 50.0% | |
| GTAGATGGGGGTAATCAAGG+AGG | - | chr4.2:12428591-12428610 | MS.gene67216:intron | 50.0% | |
| TACCTTCCACACTCGCTATC+TGG | - | chr4.2:12427416-12427435 | MS.gene67216:CDS | 50.0% | |
| TCAAGAGACTGGGAACTACC+TGG | - | chr4.2:12428557-12428576 | MS.gene67216:intron | 50.0% | |
| TGGGTAGATGGGGGTAATCA+AGG | - | chr4.2:12428588-12428607 | MS.gene67216:intron | 50.0% | |
| TGTTCAGGGAAGCAGAGATG+AGG | - | chr4.2:12429480-12429499 | MS.gene67216:CDS | 50.0% | |
| TTCGGAGACGCATTTGGTAC+CGG | + | chr4.2:12427458-12427477 | None:intergenic | 50.0% | |
| ! | CATCTACCCAAAAGCATGCC+AGG | + | chr4.2:12428578-12428597 | None:intergenic | 50.0% |
| ! | GGAACTACCTGGCATGCTTT+TGG | - | chr4.2:12428568-12428587 | MS.gene67216:intron | 50.0% |
| !! | CTGGCATGCTTTTGGGTAGA+TGG | - | chr4.2:12428576-12428595 | MS.gene67216:intron | 50.0% |
| !! | GCATGCTTTTGGGTAGATGG+GGG | - | chr4.2:12428579-12428598 | MS.gene67216:intron | 50.0% |
| !! | GGCATGCTTTTGGGTAGATG+GGG | - | chr4.2:12428578-12428597 | MS.gene67216:intron | 50.0% |
| AGCCAGATAGCGAGTGTGGA+AGG | + | chr4.2:12427421-12427440 | None:intergenic | 55.0% | |
| CAGCTCAAGCTCAACTCCCT+AGG | + | chr4.2:12429302-12429321 | None:intergenic | 55.0% | |
| CGTAAGCCAGATAGCGAGTG+TGG | + | chr4.2:12427425-12427444 | None:intergenic | 55.0% | |
| GAACAAACGGCAGAGTGGCA+TGG | - | chr4.2:12429516-12429535 | MS.gene67216:CDS | 55.0% | |
| GGGTAATCAAGGAGGTCACG+AGG | - | chr4.2:12428599-12428618 | MS.gene67216:intron | 55.0% | |
| TAGTCCCACTCTCGCTGTCA+AGG | - | chr4.2:12427540-12427559 | MS.gene67216:intron | 55.0% | |
| TGACAGCGAGAGTGGGACTA+CGG | + | chr4.2:12427540-12427559 | None:intergenic | 55.0% | |
| TGGCTTACGTTACCCACCAC+CGG | - | chr4.2:12427436-12427455 | MS.gene67216:CDS | 55.0% | |
| !! | ACGCATTTGGTACCGGTGGT+GGG | + | chr4.2:12427451-12427470 | None:intergenic | 55.0% |
| !!! | TTTTGGAGCCTGAGCAGCGT+AGG | - | chr4.2:12428095-12428114 | MS.gene67216:intron | 55.0% |
| GACAGCGAGAGTGGGACTAC+GGG | + | chr4.2:12427539-12427558 | None:intergenic | 60.0% | |
| ! | GGAGACGCATTTGGTACCGG+TGG | + | chr4.2:12427455-12427474 | None:intergenic | 60.0% |
| !! | GACGCATTTGGTACCGGTGG+TGG | + | chr4.2:12427452-12427471 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12427361 | 12429631 | 12427361 | ID=MS.gene67216 |
| chr4.2 | mRNA | 12427361 | 12429631 | 12427361 | ID=MS.gene67216.t1;Parent=MS.gene67216 |
| chr4.2 | exon | 12429431 | 12429631 | 12429431 | ID=MS.gene67216.t1.exon1;Parent=MS.gene67216.t1 |
| chr4.2 | CDS | 12429431 | 12429631 | 12429431 | ID=cds.MS.gene67216.t1;Parent=MS.gene67216.t1 |
| chr4.2 | exon | 12428294 | 12428506 | 12428294 | ID=MS.gene67216.t1.exon2;Parent=MS.gene67216.t1 |
| chr4.2 | CDS | 12428294 | 12428506 | 12428294 | ID=cds.MS.gene67216.t1;Parent=MS.gene67216.t1 |
| chr4.2 | exon | 12427612 | 12427688 | 12427612 | ID=MS.gene67216.t1.exon3;Parent=MS.gene67216.t1 |
| chr4.2 | CDS | 12427612 | 12427688 | 12427612 | ID=cds.MS.gene67216.t1;Parent=MS.gene67216.t1 |
| chr4.2 | exon | 12427361 | 12427505 | 12427361 | ID=MS.gene67216.t1.exon4;Parent=MS.gene67216.t1 |
| chr4.2 | CDS | 12427361 | 12427505 | 12427361 | ID=cds.MS.gene67216.t1;Parent=MS.gene67216.t1 |
| Gene Sequence |
| Protein sequence |
