Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46902.t1 | RHN70724.1 | 97.7 | 309 | 7 | 0 | 1 | 309 | 1 | 309 | 1.70E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46902.t1 | Q9FFB6 | 67.9 | 265 | 85 | 0 | 44 | 308 | 7 | 271 | 1.0e-93 | 344.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46902.t1 | A0A396J207 | 97.7 | 309 | 7 | 0 | 1 | 309 | 1 | 309 | 1.2e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene46902 | -0.80048 | 1.41E-48 | -1.69E-46 |
| MS.gene050325 | MS.gene46902 | 0.819739 | 9.92E-53 | -1.69E-46 |
| MS.gene050327 | MS.gene46902 | 0.814996 | 1.16E-51 | -1.69E-46 |
| MS.gene057173 | MS.gene46902 | 0.811649 | 6.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004457 | MS.gene46902 | PPI |
| MS.gene46902 | MS.gene00991 | PPI |
| MS.gene09127 | MS.gene46902 | PPI |
| MS.gene96207 | MS.gene46902 | PPI |
| MS.gene002763 | MS.gene46902 | PPI |
| MS.gene049765 | MS.gene46902 | PPI |
| MS.gene007740 | MS.gene46902 | PPI |
| MS.gene46902 | MS.gene03701 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46902.t1 | MTR_3g108240 | 97.411 | 309 | 8 | 0 | 1 | 309 | 1 | 309 | 0.0 | 624 |
| MS.gene46902.t1 | MTR_3g108240 | 96.764 | 309 | 8 | 1 | 1 | 309 | 1 | 307 | 0.0 | 614 |
| MS.gene46902.t1 | MTR_1g047740 | 72.492 | 309 | 77 | 2 | 1 | 309 | 1 | 301 | 9.15e-169 | 470 |
| MS.gene46902.t1 | MTR_7g102990 | 71.654 | 254 | 72 | 0 | 56 | 309 | 16 | 269 | 9.94e-141 | 399 |
| MS.gene46902.t1 | MTR_4g057310 | 70.850 | 247 | 72 | 0 | 62 | 308 | 16 | 262 | 1.44e-136 | 388 |
| MS.gene46902.t1 | MTR_1g010150 | 83.902 | 205 | 33 | 0 | 105 | 309 | 1 | 205 | 8.46e-131 | 370 |
| MS.gene46902.t1 | MTR_2g020040 | 58.468 | 248 | 102 | 1 | 58 | 305 | 12 | 258 | 3.10e-108 | 315 |
| MS.gene46902.t1 | MTR_4g057310 | 70.918 | 196 | 57 | 0 | 62 | 257 | 19 | 214 | 2.34e-107 | 311 |
| MS.gene46902.t1 | MTR_7g102990 | 70.492 | 183 | 54 | 0 | 56 | 238 | 16 | 198 | 3.21e-95 | 281 |
| MS.gene46902.t1 | MTR_8g104410 | 34.343 | 297 | 166 | 8 | 27 | 308 | 717 | 999 | 4.65e-50 | 178 |
| MS.gene46902.t1 | MTR_8g104410 | 34.343 | 297 | 166 | 8 | 27 | 308 | 953 | 1235 | 6.15e-50 | 178 |
| MS.gene46902.t1 | MTR_4g107440 | 35.816 | 282 | 153 | 8 | 29 | 305 | 1011 | 1269 | 5.05e-49 | 175 |
| MS.gene46902.t1 | MTR_6g083900 | 40.000 | 250 | 131 | 8 | 62 | 305 | 986 | 1222 | 5.52e-49 | 175 |
| MS.gene46902.t1 | MTR_1g010170 | 60.465 | 43 | 17 | 0 | 1 | 43 | 1 | 43 | 6.73e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46902.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene46902.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene46902.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene46902.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene46902.t1 | AT5G25560 | 66.978 | 321 | 91 | 4 | 1 | 309 | 1 | 318 | 7.11e-152 | 428 |
| MS.gene46902.t1 | AT5G25560 | 67.846 | 311 | 90 | 4 | 1 | 309 | 1 | 303 | 3.91e-149 | 421 |
| MS.gene46902.t1 | AT5G22920 | 65.660 | 265 | 91 | 0 | 44 | 308 | 7 | 271 | 3.88e-135 | 385 |
| MS.gene46902.t1 | AT5G22920 | 64.935 | 231 | 81 | 0 | 44 | 274 | 7 | 237 | 8.89e-115 | 331 |
| MS.gene46902.t1 | AT5G18650 | 57.874 | 254 | 106 | 1 | 52 | 305 | 6 | 258 | 2.21e-110 | 321 |
| MS.gene46902.t1 | AT3G62970 | 53.968 | 252 | 114 | 2 | 55 | 306 | 26 | 275 | 1.56e-100 | 297 |
| MS.gene46902.t1 | AT3G62970 | 54.884 | 215 | 96 | 1 | 55 | 269 | 26 | 239 | 1.29e-88 | 265 |
| MS.gene46902.t1 | AT3G62970 | 54.854 | 206 | 92 | 1 | 55 | 260 | 26 | 230 | 5.15e-84 | 253 |
| MS.gene46902.t1 | AT1G74770 | 39.007 | 282 | 143 | 8 | 29 | 305 | 1000 | 1257 | 7.16e-56 | 195 |
| MS.gene46902.t1 | AT1G18910 | 39.858 | 281 | 140 | 8 | 30 | 305 | 996 | 1252 | 2.98e-54 | 191 |
| MS.gene46902.t1 | AT3G18290 | 38.976 | 254 | 135 | 7 | 62 | 309 | 1004 | 1243 | 1.64e-50 | 179 |
| MS.gene46902.t1 | AT1G74770 | 38.496 | 226 | 110 | 8 | 29 | 249 | 1000 | 1201 | 8.62e-41 | 151 |
Find 58 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGAGGATATATGGAGTA+TGG | 0.207183 | 3.1:+86375069 | MS.gene46902:CDS |
| ACCGGAGAAGGTGTCGTATT+AGG | 0.258966 | 3.1:+86375187 | MS.gene46902:CDS |
| TTTCATTCAGACAGCTCTTA+TGG | 0.265918 | 3.1:-86376768 | None:intergenic |
| TGAACCATATCTTAATAAAA+TGG | 0.283237 | 3.1:+86376988 | MS.gene46902:CDS |
| TTGTGATATGTCAAAGGTTT+GGG | 0.324215 | 3.1:+86376928 | MS.gene46902:CDS |
| CCGGAGAAGGTGTCGTATTA+GGG | 0.346547 | 3.1:+86375188 | MS.gene46902:CDS |
| TCTGTAGATGTCAACATTAC+CGG | 0.349957 | 3.1:+86375169 | MS.gene46902:intron |
| CTTGCGAGAGAGAGGATATA+TGG | 0.362778 | 3.1:+86375062 | MS.gene46902:CDS |
| ATGCATGTGCTCTTCATTTG+AGG | 0.389882 | 3.1:-86374995 | None:intergenic |
| TTTGTGATATGTCAAAGGTT+TGG | 0.406110 | 3.1:+86376927 | MS.gene46902:CDS |
| GCAGTGGTTGTGGAATTTGC+AGG | 0.412763 | 3.1:+86376140 | MS.gene46902:CDS |
| GACAGCTCTTATGGATTGTA+TGG | 0.427608 | 3.1:-86376759 | None:intergenic |
| TGCATGTGCTCTTCATTTGA+GGG | 0.437426 | 3.1:-86374994 | None:intergenic |
| CAGTACCATTGCAGTGGTTG+TGG | 0.446831 | 3.1:+86376130 | MS.gene46902:CDS |
| TCCCCGCCATCAGGTCAAAC+AGG | 0.452846 | 3.1:+86375638 | MS.gene46902:CDS |
| TTTGTGCGACAAGATGAAAC+TGG | 0.460355 | 3.1:-86377447 | None:intergenic |
| AACGGTCACCCTTGCGTGGA+AGG | 0.469907 | 3.1:+86376558 | MS.gene46902:CDS |
| ATTGTTACCTCAAAACAAAC+AGG | 0.479044 | 3.1:-86376600 | None:intergenic |
| TTCAATTTGAGTGCAATGAC+AGG | 0.480009 | 3.1:+86374938 | MS.gene46902:CDS |
| TTAAGATATGGTTCAGGCAT+CGG | 0.481734 | 3.1:-86376980 | None:intergenic |
| TGCATTGCTCCTTCCACGCA+AGG | 0.486426 | 3.1:-86376567 | None:intergenic |
| AAACTGACTTTGAGCACAAA+GGG | 0.486545 | 3.1:-86376907 | None:intergenic |
| AGAGAGGATATATGGAGTAT+GGG | 0.487300 | 3.1:+86375070 | MS.gene46902:CDS |
| TACCTGTTTGACCTGATGGC+GGG | 0.493489 | 3.1:-86375640 | None:intergenic |
| TATCAATTGCGGTGTGTGCA+TGG | 0.500787 | 3.1:+86376054 | MS.gene46902:CDS |
| CCCTAATACGACACCTTCTC+CGG | 0.508236 | 3.1:-86375188 | None:intergenic |
| AACATACCTGTTTGACCTGA+TGG | 0.508780 | 3.1:-86375644 | None:intergenic |
| GTCAGTTTGTGATATGTCAA+AGG | 0.511690 | 3.1:+86376922 | MS.gene46902:CDS |
| ACACGACATTCCCCGCCATC+AGG | 0.513051 | 3.1:+86375629 | MS.gene46902:CDS |
| GATGTCAACATTACCGGAGA+AGG | 0.534230 | 3.1:+86375175 | MS.gene46902:intron |
| TGGATCCTTTGCAATGATTG+CGG | 0.546423 | 3.1:+86377409 | MS.gene46902:CDS |
| AGAGCTGTCTGAATGAAATG+AGG | 0.554066 | 3.1:+86376773 | MS.gene46902:CDS |
| TCAAATATCTCATTGCAACA+AGG | 0.556883 | 3.1:-86375213 | None:intergenic |
| ATCAATGACTTGCGAGAGAG+AGG | 0.557776 | 3.1:+86375054 | MS.gene46902:CDS |
| TTTCGCCGCAATCATTGCAA+AGG | 0.558309 | 3.1:-86377414 | None:intergenic |
| ACCTGTTTGACCTGATGGCG+GGG | 0.562153 | 3.1:-86375639 | None:intergenic |
| GCACTCAAATTGAAGAGGCT+CGG | 0.562219 | 3.1:-86374929 | None:intergenic |
| AGTGAGCATCATGGGAGAAG+TGG | 0.570618 | 3.1:+86374894 | None:intergenic |
| ATCAATTGCGGTGTGTGCAT+GGG | 0.579084 | 3.1:+86376055 | MS.gene46902:CDS |
| TCATTGCACTCAAATTGAAG+AGG | 0.591774 | 3.1:-86374934 | None:intergenic |
| CAAATATCTCATTGCAACAA+GGG | 0.593446 | 3.1:-86375212 | None:intergenic |
| GAGCTGTCTGAATGAAATGA+GGG | 0.595369 | 3.1:+86376774 | MS.gene46902:CDS |
| AAATTCCACAACCACTGCAA+TGG | 0.598547 | 3.1:-86376135 | None:intergenic |
| CAAACTGACTTTGAGCACAA+AGG | 0.599345 | 3.1:-86376908 | None:intergenic |
| TTCTTCCACTGCTACAAGTG+TGG | 0.601466 | 3.1:+86376407 | MS.gene46902:CDS |
| TCAAATGAAGAGCACATGCA+TGG | 0.607616 | 3.1:+86374997 | MS.gene46902:CDS |
| ACTTACCACACTTGTAGCAG+TGG | 0.608628 | 3.1:-86376412 | None:intergenic |
| AAATATCTCATTGCAACAAG+GGG | 0.613018 | 3.1:-86375211 | None:intergenic |
| ACTCTGTGAGACTGAACAAG+AGG | 0.613028 | 3.1:+86375780 | MS.gene46902:CDS |
| TATAACACAAGACAAACAAG+AGG | 0.622837 | 3.1:+86377490 | MS.gene46902:CDS |
| GCATTGCTCCTTCCACGCAA+GGG | 0.626467 | 3.1:-86376566 | None:intergenic |
| TTGTCGCCATTGTCACAATG+AGG | 0.627282 | 3.1:+86375236 | MS.gene46902:CDS |
| ATACCTGTTTGACCTGATGG+CGG | 0.637436 | 3.1:-86375641 | None:intergenic |
| CAGCAGAACTGTATCAATTG+CGG | 0.643368 | 3.1:+86376043 | MS.gene46902:CDS |
| CAATGACAGGAATCTTATCA+CGG | 0.652971 | 3.1:+86374951 | MS.gene46902:CDS |
| AAGCAGCAGTACCATTGCAG+TGG | 0.661184 | 3.1:+86376124 | MS.gene46902:CDS |
| TGTATGGCCGCAATGCAACA+CGG | 0.679908 | 3.1:-86376743 | None:intergenic |
| GATGTCTCCGTGTTGCATTG+CGG | 0.707696 | 3.1:+86376736 | MS.gene46902:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAAGTCAAAT+TGG | - | chr3.1:86377214-86377233 | None:intergenic | 10.0% |
| !! | ATATAAAATAAAGTCAAATT+GGG | - | chr3.1:86377213-86377232 | None:intergenic | 10.0% |
| !!! | ATTTGACTTTATTTTATATT+TGG | + | chr3.1:86377214-86377233 | MS.gene46902:intron | 10.0% |
| !! | TTCTAAATGATATAATGAAA+TGG | - | chr3.1:86375970-86375989 | None:intergenic | 15.0% |
| !!! | AAATCATTAATTTTTTACGA+TGG | - | chr3.1:86375147-86375166 | None:intergenic | 15.0% |
| !! | TCTCAAAATTAATAACTGTT+TGG | - | chr3.1:86375903-86375922 | None:intergenic | 20.0% |
| !! | TGAACCATATCTTAATAAAA+TGG | + | chr3.1:86376988-86377007 | MS.gene46902:CDS | 20.0% |
| !! | TGTTATGAAATTACTTATGA+CGG | + | chr3.1:86375853-86375872 | MS.gene46902:intron | 20.0% |
| !! | TTACAATATAATCCTCATTA+TGG | - | chr3.1:86375351-86375370 | None:intergenic | 20.0% |
| !!! | ATATGTTTTAAAAACAGAAC+TGG | + | chr3.1:86376371-86376390 | MS.gene46902:intron | 20.0% |
| !!! | ATTTTATTAAGATATGGTTC+AGG | - | chr3.1:86376989-86377008 | None:intergenic | 20.0% |
| !!! | CTTACCATTTTATTAAGATA+TGG | - | chr3.1:86376995-86377014 | None:intergenic | 20.0% |
| !!! | TTCATTATATCATTTAGAAC+TGG | + | chr3.1:86375971-86375990 | MS.gene46902:intron | 20.0% |
| !!! | TTTGTATTTGATTTTGTATC+AGG | + | chr3.1:86376876-86376895 | MS.gene46902:intron | 20.0% |
| ! | AAATAATGATCAATCCTGTT+TGG | - | chr3.1:86377296-86377315 | None:intergenic | 25.0% |
| ! | ACAAATCACTACAATTGAAA+TGG | - | chr3.1:86376849-86376868 | None:intergenic | 25.0% |
| ! | ACTTATGACTTAGAATGAAA+TGG | + | chr3.1:86375503-86375522 | MS.gene46902:intron | 25.0% |
| ! | AGATTGAAAAGCAAATAGTA+TGG | - | chr3.1:86375110-86375129 | None:intergenic | 25.0% |
| ! | ATAGAAATAGTCTATACACA+GGG | + | chr3.1:86377239-86377258 | MS.gene46902:intron | 25.0% |
| ! | CAAAATCAAATACAAAGTTC+AGG | - | chr3.1:86376872-86376891 | None:intergenic | 25.0% |
| ! | CAAAATTAATAACTGTTTGG+AGG | - | chr3.1:86375900-86375919 | None:intergenic | 25.0% |
| ! | CAAATTTCATAGACAACTTT+AGG | + | chr3.1:86375464-86375483 | MS.gene46902:intron | 25.0% |
| ! | CATAAATTCAACAAATTGAC+AGG | - | chr3.1:86376655-86376674 | None:intergenic | 25.0% |
| ! | GATTGAAAAGCAAATAGTAT+GGG | - | chr3.1:86375109-86375128 | None:intergenic | 25.0% |
| ! | TACTCAACTTTGTTGAAAAA+CGG | + | chr3.1:86376540-86376559 | MS.gene46902:CDS | 25.0% |
| ! | TATAGAAATAGTCTATACAC+AGG | + | chr3.1:86377238-86377257 | MS.gene46902:intron | 25.0% |
| ! | TCAATACAAACAAGTCTAAA+AGG | - | chr3.1:86377022-86377041 | None:intergenic | 25.0% |
| ! | TGATTTATATATCGAGACTT+TGG | + | chr3.1:86376306-86376325 | MS.gene46902:intron | 25.0% |
| ! | TTAAAACTCTCGAATTTCTT+GGG | + | chr3.1:86375379-86375398 | MS.gene46902:intron | 25.0% |
| ! | TTTAGCTAACTTAACCAAAT+TGG | - | chr3.1:86376187-86376206 | None:intergenic | 25.0% |
| !!! | CAAATTGGTTAGCTTATTAT+CGG | - | chr3.1:86376172-86376191 | None:intergenic | 25.0% |
| !!! | CTGTCAATTTGTTGAATTTA+TGG | + | chr3.1:86376653-86376672 | MS.gene46902:intron | 25.0% |
| !!! | TAATTTTTTACGATGGCAAA+GGG | - | chr3.1:86375140-86375159 | None:intergenic | 25.0% |
| !!! | TCAATTTGTTGAATTTATGG+AGG | + | chr3.1:86376656-86376675 | MS.gene46902:intron | 25.0% |
| !!! | TTAATTTTTTACGATGGCAA+AGG | - | chr3.1:86375141-86375160 | None:intergenic | 25.0% |
| AAAATTGCAGATCTTCAATG+AGG | - | chr3.1:86375684-86375703 | None:intergenic | 30.0% | |
| AAATATCTCATTGCAACAAG+GGG | - | chr3.1:86375214-86375233 | None:intergenic | 30.0% | |
| AAGAAAAACAGTTATGAAGC+AGG | - | chr3.1:86376494-86376513 | None:intergenic | 30.0% | |
| AGAAAAAGTCATATCAACCT+TGG | - | chr3.1:86376241-86376260 | None:intergenic | 30.0% | |
| ATTGTTACCTCAAAACAAAC+AGG | - | chr3.1:86376603-86376622 | None:intergenic | 30.0% | |
| CAAATATCTCATTGCAACAA+GGG | - | chr3.1:86375215-86375234 | None:intergenic | 30.0% | |
| CGATAATAAGCTAACCAATT+TGG | + | chr3.1:86376170-86376189 | MS.gene46902:intron | 30.0% | |
| CTGTTCAGATATTTCATGTA+TGG | + | chr3.1:86375307-86375326 | MS.gene46902:intron | 30.0% | |
| GAAAAAGTCATATCAACCTT+GGG | - | chr3.1:86376240-86376259 | None:intergenic | 30.0% | |
| GAACATATCACCTGAAAAAT+TGG | - | chr3.1:86375760-86375779 | None:intergenic | 30.0% | |
| GCTTATCTCAGTTTATCTAT+TGG | - | chr3.1:86377177-86377196 | None:intergenic | 30.0% | |
| GTTAAAACTCTCGAATTTCT+TGG | + | chr3.1:86375378-86375397 | MS.gene46902:intron | 30.0% | |
| TATAACACAAGACAAACAAG+AGG | + | chr3.1:86377490-86377509 | MS.gene46902:CDS | 30.0% | |
| TCAAATATCTCATTGCAACA+AGG | - | chr3.1:86375216-86375235 | None:intergenic | 30.0% | |
| TCATCATGTACATAGTTGTA+TGG | - | chr3.1:86377338-86377357 | None:intergenic | 30.0% | |
| TCTTCATAACTTCTTTGCAT+AGG | + | chr3.1:86376510-86376529 | MS.gene46902:intron | 30.0% | |
| TTCAGATATTTCATGTATGG+TGG | + | chr3.1:86375310-86375329 | MS.gene46902:intron | 30.0% | |
| TTGTGATATGTCAAAGGTTT+GGG | + | chr3.1:86376928-86376947 | MS.gene46902:CDS | 30.0% | |
| TTTGTGATATGTCAAAGGTT+TGG | + | chr3.1:86376927-86376946 | MS.gene46902:CDS | 30.0% | |
| ! | AATGAATGCTCCAATTTTTC+AGG | + | chr3.1:86375747-86375766 | MS.gene46902:intron | 30.0% |
| !!! | ATTAAGCTGTTTTTCCAAAC+AGG | + | chr3.1:86377279-86377298 | MS.gene46902:intron | 30.0% |
| !!! | CTGTTGTTATTTTTCTGATG+AGG | + | chr3.1:86375717-86375736 | MS.gene46902:intron | 30.0% |
| !!! | GTTTTAAAAACAGAACTGGA+GGG | + | chr3.1:86376375-86376394 | MS.gene46902:intron | 30.0% |
| !!! | TCTTGTTTTTCCTTTTCTCT+TGG | + | chr3.1:86376260-86376279 | MS.gene46902:intron | 30.0% |
| !!! | TGTTTTAAAAACAGAACTGG+AGG | + | chr3.1:86376374-86376393 | MS.gene46902:intron | 30.0% |
| AAAGTCAAATTGGGTCTCTT+TGG | - | chr3.1:86377204-86377223 | None:intergenic | 35.0% | |
| AATACTGCGATCACCAATTT+CGG | - | chr3.1:86376699-86376718 | None:intergenic | 35.0% | |
| AGAGAGGATATATGGAGTAT+GGG | + | chr3.1:86375070-86375089 | MS.gene46902:CDS | 35.0% | |
| CAATGACAGGAATCTTATCA+CGG | + | chr3.1:86374951-86374970 | MS.gene46902:CDS | 35.0% | |
| CACAGTCTAGTATTTCATGA+TGG | + | chr3.1:86375276-86375295 | MS.gene46902:intron | 35.0% | |
| CATAACTACACTACCGAAAT+TGG | + | chr3.1:86376683-86376702 | MS.gene46902:intron | 35.0% | |
| GGTTTGGGAAAAAATTGACT+TGG | + | chr3.1:86376943-86376962 | MS.gene46902:CDS | 35.0% | |
| GTCAGTTTGTGATATGTCAA+AGG | + | chr3.1:86376922-86376941 | MS.gene46902:CDS | 35.0% | |
| TCATTGCACTCAAATTGAAG+AGG | - | chr3.1:86374937-86374956 | None:intergenic | 35.0% | |
| TCTGTAGATGTCAACATTAC+CGG | + | chr3.1:86375169-86375188 | MS.gene46902:intron | 35.0% | |
| TCTTATTGCTTGCCATAATG+AGG | + | chr3.1:86375336-86375355 | MS.gene46902:intron | 35.0% | |
| TTAAGATATGGTTCAGGCAT+CGG | - | chr3.1:86376983-86377002 | None:intergenic | 35.0% | |
| TTCAATTTGAGTGCAATGAC+AGG | + | chr3.1:86374938-86374957 | MS.gene46902:CDS | 35.0% | |
| TTTCATTCAGACAGCTCTTA+TGG | - | chr3.1:86376771-86376790 | None:intergenic | 35.0% | |
| ! | AAACTGACTTTGAGCACAAA+GGG | - | chr3.1:86376910-86376929 | None:intergenic | 35.0% |
| ! | ATTTTGTTCATATGCCATCG+TGG | + | chr3.1:86377312-86377331 | MS.gene46902:intron | 35.0% |
| ! | GCAAGTCATTGATCTTTTTG+TGG | - | chr3.1:86375047-86375066 | None:intergenic | 35.0% |
| ! | TCATTGATCTTTTTGTGGTC+TGG | - | chr3.1:86375042-86375061 | None:intergenic | 35.0% |
| ! | TGTTGCTTAACCAAGAGAAA+AGG | - | chr3.1:86376273-86376292 | None:intergenic | 35.0% |
| !! | GGAAAAAATTGACTTGGAAC+TGG | + | chr3.1:86376949-86376968 | MS.gene46902:CDS | 35.0% |
| !!! | AGACTTTGGTGCACTTTTTT+TGG | + | chr3.1:86376320-86376339 | MS.gene46902:intron | 35.0% |
| !!! | AGATTGTCCTGTTTGTTTTG+AGG | + | chr3.1:86376593-86376612 | MS.gene46902:CDS | 35.0% |
| !!! | TGCATGGGCAATTATTTTTG+CGG | + | chr3.1:86376070-86376089 | MS.gene46902:CDS | 35.0% |
| AAATTCCACAACCACTGCAA+TGG | - | chr3.1:86376138-86376157 | None:intergenic | 40.0% | |
| AACATACCTGTTTGACCTGA+TGG | - | chr3.1:86375647-86375666 | None:intergenic | 40.0% | |
| AATGTATTGTCCCTATCCCA+AGG | + | chr3.1:86376221-86376240 | MS.gene46902:intron | 40.0% | |
| AGAGCTGTCTGAATGAAATG+AGG | + | chr3.1:86376773-86376792 | MS.gene46902:CDS | 40.0% | |
| AGTCATATCAACCTTGGGAT+AGG | - | chr3.1:86376235-86376254 | None:intergenic | 40.0% | |
| ATGCATGTGCTCTTCATTTG+AGG | - | chr3.1:86374998-86375017 | None:intergenic | 40.0% | |
| ATTGCAGATCTTCAATGAGG+TGG | - | chr3.1:86375681-86375700 | None:intergenic | 40.0% | |
| ATTTGATGCACTCTCTTGAC+AGG | + | chr3.1:86377384-86377403 | MS.gene46902:intron | 40.0% | |
| CAAATTGGGTCTCTTTGGAT+TGG | - | chr3.1:86377199-86377218 | None:intergenic | 40.0% | |
| CAGCAGAACTGTATCAATTG+CGG | + | chr3.1:86376043-86376062 | MS.gene46902:CDS | 40.0% | |
| GAGAGAGGATATATGGAGTA+TGG | + | chr3.1:86375069-86375088 | MS.gene46902:CDS | 40.0% | |
| GAGCTGTCTGAATGAAATGA+GGG | + | chr3.1:86376774-86376793 | MS.gene46902:CDS | 40.0% | |
| GTCATATCAACCTTGGGATA+GGG | - | chr3.1:86376234-86376253 | None:intergenic | 40.0% | |
| TGCATGTGCTCTTCATTTGA+GGG | - | chr3.1:86374997-86375016 | None:intergenic | 40.0% | |
| TGGATCCTTTGCAATGATTG+CGG | + | chr3.1:86377409-86377428 | MS.gene46902:CDS | 40.0% | |
| TTTGTGCGACAAGATGAAAC+TGG | - | chr3.1:86377450-86377469 | None:intergenic | 40.0% | |
| ! | CAAACTGACTTTGAGCACAA+AGG | - | chr3.1:86376911-86376930 | None:intergenic | 40.0% |
| ! | CAAGAGAGTGCATCAAATCT+TGG | - | chr3.1:86377382-86377401 | None:intergenic | 40.0% |
| ! | CTGCAGCATCACTTTCATTT+TGG | + | chr3.1:86375549-86375568 | MS.gene46902:intron | 40.0% |
| ! | CTTTTGCCTCATTGTGACAA+TGG | - | chr3.1:86375245-86375264 | None:intergenic | 40.0% |
| ! | GACAGCTCTTATGGATTGTA+TGG | - | chr3.1:86376762-86376781 | None:intergenic | 40.0% |
| ! | TCAAATGAAGAGCACATGCA+TGG | + | chr3.1:86374997-86375016 | MS.gene46902:CDS | 40.0% |
| ! | TCTTTTTGTGGTCTGGTGAT+TGG | - | chr3.1:86375035-86375054 | None:intergenic | 40.0% |
| !!! | GCATGGGCAATTATTTTTGC+GGG | + | chr3.1:86376071-86376090 | MS.gene46902:CDS | 40.0% |
| ACATAGTTGTATGGCCACGA+TGG | - | chr3.1:86377329-86377348 | None:intergenic | 45.0% | |
| ACTCTGTGAGACTGAACAAG+AGG | + | chr3.1:86375780-86375799 | MS.gene46902:CDS | 45.0% | |
| ACTTACCACACTTGTAGCAG+TGG | - | chr3.1:86376415-86376434 | None:intergenic | 45.0% | |
| ATACCTGTTTGACCTGATGG+CGG | - | chr3.1:86375644-86375663 | None:intergenic | 45.0% | |
| ATCAATTGCGGTGTGTGCAT+GGG | + | chr3.1:86376055-86376074 | MS.gene46902:CDS | 45.0% | |
| ATGCACTCTCTTGACAGGTT+TGG | + | chr3.1:86377389-86377408 | MS.gene46902:intron | 45.0% | |
| CCTGGAAGCAGAAGATATCA+AGG | - | chr3.1:86376021-86376040 | None:intergenic | 45.0% | |
| CCTTGATATCTTCTGCTTCC+AGG | + | chr3.1:86376018-86376037 | MS.gene46902:intron | 45.0% | |
| CTTGCGAGAGAGAGGATATA+TGG | + | chr3.1:86375062-86375081 | MS.gene46902:CDS | 45.0% | |
| GATGTCAACATTACCGGAGA+AGG | + | chr3.1:86375175-86375194 | MS.gene46902:intron | 45.0% | |
| GCACTCAAATTGAAGAGGCT+CGG | - | chr3.1:86374932-86374951 | None:intergenic | 45.0% | |
| TATCAATTGCGGTGTGTGCA+TGG | + | chr3.1:86376054-86376073 | MS.gene46902:CDS | 45.0% | |
| TGATACAGTTCTGCTGAACC+TGG | - | chr3.1:86376039-86376058 | None:intergenic | 45.0% | |
| TTCTTCCACTGCTACAAGTG+TGG | + | chr3.1:86376407-86376426 | MS.gene46902:CDS | 45.0% | |
| TTGTCGCCATTGTCACAATG+AGG | + | chr3.1:86375236-86375255 | MS.gene46902:CDS | 45.0% | |
| TTTCGCCGCAATCATTGCAA+AGG | - | chr3.1:86377417-86377436 | None:intergenic | 45.0% | |
| ! | ATCAATGACTTGCGAGAGAG+AGG | + | chr3.1:86375054-86375073 | MS.gene46902:CDS | 45.0% |
| AAGCAGCAGTACCATTGCAG+TGG | + | chr3.1:86376124-86376143 | MS.gene46902:CDS | 50.0% | |
| CAGTACCATTGCAGTGGTTG+TGG | + | chr3.1:86376130-86376149 | MS.gene46902:CDS | 50.0% | |
| CCCTAATACGACACCTTCTC+CGG | - | chr3.1:86375191-86375210 | None:intergenic | 50.0% | |
| GATGTCTCCGTGTTGCATTG+CGG | + | chr3.1:86376736-86376755 | MS.gene46902:CDS | 50.0% | |
| GCAGTGGTTGTGGAATTTGC+AGG | + | chr3.1:86376140-86376159 | MS.gene46902:CDS | 50.0% | |
| TACCTGTTTGACCTGATGGC+GGG | - | chr3.1:86375643-86375662 | None:intergenic | 50.0% | |
| TGTATGGCCGCAATGCAACA+CGG | - | chr3.1:86376746-86376765 | None:intergenic | 50.0% | |
| !! | ACCGGAGAAGGTGTCGTATT+AGG | + | chr3.1:86375187-86375206 | MS.gene46902:CDS | 50.0% |
| !! | CCGGAGAAGGTGTCGTATTA+GGG | + | chr3.1:86375188-86375207 | MS.gene46902:CDS | 50.0% |
| GAAAAACGGTCACCCTTGCG+TGG | + | chr3.1:86376554-86376573 | MS.gene46902:CDS | 55.0% | |
| GCATTGCTCCTTCCACGCAA+GGG | - | chr3.1:86376569-86376588 | None:intergenic | 55.0% | |
| TGCATTGCTCCTTCCACGCA+AGG | - | chr3.1:86376570-86376589 | None:intergenic | 55.0% | |
| ! | ACCTGTTTGACCTGATGGCG+GGG | - | chr3.1:86375642-86375661 | None:intergenic | 55.0% |
| AACGGTCACCCTTGCGTGGA+AGG | + | chr3.1:86376558-86376577 | MS.gene46902:CDS | 60.0% | |
| ACACGACATTCCCCGCCATC+AGG | + | chr3.1:86375629-86375648 | MS.gene46902:CDS | 60.0% | |
| TCCCCGCCATCAGGTCAAAC+AGG | + | chr3.1:86375638-86375657 | MS.gene46902:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86374904 | 86377516 | 86374904 | ID=MS.gene46902 |
| chr3.1 | mRNA | 86374904 | 86377516 | 86374904 | ID=MS.gene46902.t1;Parent=MS.gene46902 |
| chr3.1 | exon | 86374904 | 86375091 | 86374904 | ID=MS.gene46902.t1.exon1;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86374904 | 86375091 | 86374904 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86375176 | 86375263 | 86375176 | ID=MS.gene46902.t1.exon2;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86375176 | 86375263 | 86375176 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86375600 | 86375659 | 86375600 | ID=MS.gene46902.t1.exon3;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86375600 | 86375659 | 86375600 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86375769 | 86375801 | 86375769 | ID=MS.gene46902.t1.exon4;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86375769 | 86375801 | 86375769 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86376040 | 86376161 | 86376040 | ID=MS.gene46902.t1.exon5;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86376040 | 86376161 | 86376040 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86376388 | 86376428 | 86376388 | ID=MS.gene46902.t1.exon6;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86376388 | 86376428 | 86376388 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86376532 | 86376614 | 86376532 | ID=MS.gene46902.t1.exon7;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86376532 | 86376614 | 86376532 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86376715 | 86376806 | 86376715 | ID=MS.gene46902.t1.exon8;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86376715 | 86376806 | 86376715 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86376898 | 86377009 | 86376898 | ID=MS.gene46902.t1.exon9;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86376898 | 86377009 | 86376898 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| chr3.1 | exon | 86377406 | 86377516 | 86377406 | ID=MS.gene46902.t1.exon10;Parent=MS.gene46902.t1 |
| chr3.1 | CDS | 86377406 | 86377516 | 86377406 | ID=cds.MS.gene46902.t1;Parent=MS.gene46902.t1 |
| Gene Sequence |
| Protein sequence |
