Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46900.t1 | RHN70724.1 | 97.7 | 309 | 7 | 0 | 1 | 309 | 1 | 309 | 1.70E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46900.t1 | Q9FFB6 | 67.9 | 265 | 85 | 0 | 44 | 308 | 7 | 271 | 1.0e-93 | 344.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46900.t1 | A0A396J207 | 97.7 | 309 | 7 | 0 | 1 | 309 | 1 | 309 | 1.2e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene46900 | -0.803187 | 3.93E-49 | -1.69E-46 |
| MS.gene050325 | MS.gene46900 | 0.822903 | 1.85E-53 | -1.69E-46 |
| MS.gene050327 | MS.gene46900 | 0.819302 | 1.25E-52 | -1.69E-46 |
| MS.gene050800 | MS.gene46900 | 0.800361 | 1.49E-48 | -1.69E-46 |
| MS.gene057173 | MS.gene46900 | 0.816428 | 5.56E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09127 | MS.gene46900 | PPI |
| MS.gene96207 | MS.gene46900 | PPI |
| MS.gene002763 | MS.gene46900 | PPI |
| MS.gene46900 | MS.gene03701 | PPI |
| MS.gene007740 | MS.gene46900 | PPI |
| MS.gene049765 | MS.gene46900 | PPI |
| MS.gene46900 | MS.gene00991 | PPI |
| MS.gene004457 | MS.gene46900 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46900.t1 | MTR_3g108240 | 97.411 | 309 | 8 | 0 | 1 | 309 | 1 | 309 | 0.0 | 624 |
| MS.gene46900.t1 | MTR_3g108240 | 96.764 | 309 | 8 | 1 | 1 | 309 | 1 | 307 | 0.0 | 614 |
| MS.gene46900.t1 | MTR_1g047740 | 72.492 | 309 | 77 | 2 | 1 | 309 | 1 | 301 | 9.15e-169 | 470 |
| MS.gene46900.t1 | MTR_7g102990 | 71.654 | 254 | 72 | 0 | 56 | 309 | 16 | 269 | 9.94e-141 | 399 |
| MS.gene46900.t1 | MTR_4g057310 | 70.850 | 247 | 72 | 0 | 62 | 308 | 16 | 262 | 1.44e-136 | 388 |
| MS.gene46900.t1 | MTR_1g010150 | 83.902 | 205 | 33 | 0 | 105 | 309 | 1 | 205 | 8.46e-131 | 370 |
| MS.gene46900.t1 | MTR_2g020040 | 58.468 | 248 | 102 | 1 | 58 | 305 | 12 | 258 | 3.10e-108 | 315 |
| MS.gene46900.t1 | MTR_4g057310 | 70.918 | 196 | 57 | 0 | 62 | 257 | 19 | 214 | 2.34e-107 | 311 |
| MS.gene46900.t1 | MTR_7g102990 | 70.492 | 183 | 54 | 0 | 56 | 238 | 16 | 198 | 3.21e-95 | 281 |
| MS.gene46900.t1 | MTR_8g104410 | 34.343 | 297 | 166 | 8 | 27 | 308 | 717 | 999 | 4.65e-50 | 178 |
| MS.gene46900.t1 | MTR_8g104410 | 34.343 | 297 | 166 | 8 | 27 | 308 | 953 | 1235 | 6.15e-50 | 178 |
| MS.gene46900.t1 | MTR_4g107440 | 35.816 | 282 | 153 | 8 | 29 | 305 | 1011 | 1269 | 5.05e-49 | 175 |
| MS.gene46900.t1 | MTR_6g083900 | 40.000 | 250 | 131 | 8 | 62 | 305 | 986 | 1222 | 5.52e-49 | 175 |
| MS.gene46900.t1 | MTR_1g010170 | 60.465 | 43 | 17 | 0 | 1 | 43 | 1 | 43 | 6.73e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46900.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene46900.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene46900.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene46900.t1 | AT5G25560 | 69.132 | 311 | 91 | 3 | 1 | 309 | 1 | 308 | 7.48e-155 | 435 |
| MS.gene46900.t1 | AT5G25560 | 66.978 | 321 | 91 | 4 | 1 | 309 | 1 | 318 | 7.11e-152 | 428 |
| MS.gene46900.t1 | AT5G25560 | 67.846 | 311 | 90 | 4 | 1 | 309 | 1 | 303 | 3.91e-149 | 421 |
| MS.gene46900.t1 | AT5G22920 | 65.660 | 265 | 91 | 0 | 44 | 308 | 7 | 271 | 3.88e-135 | 385 |
| MS.gene46900.t1 | AT5G22920 | 64.935 | 231 | 81 | 0 | 44 | 274 | 7 | 237 | 8.89e-115 | 331 |
| MS.gene46900.t1 | AT5G18650 | 57.874 | 254 | 106 | 1 | 52 | 305 | 6 | 258 | 2.21e-110 | 321 |
| MS.gene46900.t1 | AT3G62970 | 53.968 | 252 | 114 | 2 | 55 | 306 | 26 | 275 | 1.56e-100 | 297 |
| MS.gene46900.t1 | AT3G62970 | 54.884 | 215 | 96 | 1 | 55 | 269 | 26 | 239 | 1.29e-88 | 265 |
| MS.gene46900.t1 | AT3G62970 | 54.854 | 206 | 92 | 1 | 55 | 260 | 26 | 230 | 5.15e-84 | 253 |
| MS.gene46900.t1 | AT1G74770 | 39.007 | 282 | 143 | 8 | 29 | 305 | 1000 | 1257 | 7.16e-56 | 195 |
| MS.gene46900.t1 | AT1G18910 | 39.858 | 281 | 140 | 8 | 30 | 305 | 996 | 1252 | 2.98e-54 | 191 |
| MS.gene46900.t1 | AT3G18290 | 38.976 | 254 | 135 | 7 | 62 | 309 | 1004 | 1243 | 1.64e-50 | 179 |
| MS.gene46900.t1 | AT1G74770 | 38.496 | 226 | 110 | 8 | 29 | 249 | 1000 | 1201 | 8.62e-41 | 151 |
Find 58 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGAGGATATATGGAGTA+TGG | 0.207183 | 3.1:+86298861 | MS.gene46900:CDS |
| ACCGGAGAAGGTGTCGTATT+AGG | 0.258966 | 3.1:+86298979 | MS.gene46900:CDS |
| TTTCATTCAGACAGCTCTTA+TGG | 0.265918 | 3.1:-86300564 | None:intergenic |
| TGAACCATATCTTAATAAAA+TGG | 0.283237 | 3.1:+86300784 | MS.gene46900:CDS |
| TTGTGATATGTCAAAGGTTT+GGG | 0.324215 | 3.1:+86300724 | MS.gene46900:CDS |
| CCGGAGAAGGTGTCGTATTA+GGG | 0.346547 | 3.1:+86298980 | MS.gene46900:CDS |
| TCTGTAGATGTCAACATTAC+CGG | 0.349957 | 3.1:+86298961 | MS.gene46900:intron |
| CTTGCGAGAGAGAGGATATA+TGG | 0.362778 | 3.1:+86298854 | MS.gene46900:CDS |
| ATGCATGTGCTCTTCATTTG+AGG | 0.389882 | 3.1:-86298787 | None:intergenic |
| TTTGTGATATGTCAAAGGTT+TGG | 0.406110 | 3.1:+86300723 | MS.gene46900:CDS |
| GCAGTGGTTGTGGAATTTGC+AGG | 0.412763 | 3.1:+86299934 | MS.gene46900:CDS |
| GACAGCTCTTATGGATTGTA+TGG | 0.427608 | 3.1:-86300555 | None:intergenic |
| TGCATGTGCTCTTCATTTGA+GGG | 0.437426 | 3.1:-86298786 | None:intergenic |
| CAGTACCATTGCAGTGGTTG+TGG | 0.446831 | 3.1:+86299924 | MS.gene46900:CDS |
| TCCCCGCCATCAGGTCAAAC+AGG | 0.452846 | 3.1:+86299431 | MS.gene46900:CDS |
| TTTGTGCGACAAGATGAAAC+TGG | 0.460355 | 3.1:-86301243 | None:intergenic |
| AACGGTCACCCTTGCGTGGA+AGG | 0.469907 | 3.1:+86300354 | MS.gene46900:CDS |
| ATTGTTACCTCAAAACAAAC+AGG | 0.479044 | 3.1:-86300396 | None:intergenic |
| TTCAATTTGAGTGCAATGAC+AGG | 0.480009 | 3.1:+86298730 | MS.gene46900:CDS |
| TTAAGATATGGTTCAGGCAT+CGG | 0.481734 | 3.1:-86300776 | None:intergenic |
| TGCATTGCTCCTTCCACGCA+AGG | 0.486426 | 3.1:-86300363 | None:intergenic |
| AAACTGACTTTGAGCACAAA+GGG | 0.486545 | 3.1:-86300703 | None:intergenic |
| AGAGAGGATATATGGAGTAT+GGG | 0.487300 | 3.1:+86298862 | MS.gene46900:CDS |
| TACCTGTTTGACCTGATGGC+GGG | 0.493489 | 3.1:-86299433 | None:intergenic |
| TATCAATTGCGGTGTGTGCA+TGG | 0.500787 | 3.1:+86299848 | MS.gene46900:CDS |
| CCCTAATACGACACCTTCTC+CGG | 0.508236 | 3.1:-86298980 | None:intergenic |
| AACATACCTGTTTGACCTGA+TGG | 0.508780 | 3.1:-86299437 | None:intergenic |
| GTCAGTTTGTGATATGTCAA+AGG | 0.511690 | 3.1:+86300718 | MS.gene46900:CDS |
| ACACGACATTCCCCGCCATC+AGG | 0.513051 | 3.1:+86299422 | MS.gene46900:CDS |
| GATGTCAACATTACCGGAGA+AGG | 0.534230 | 3.1:+86298967 | MS.gene46900:intron |
| TGGATCCTTTGCAATGATTG+CGG | 0.546423 | 3.1:+86301205 | MS.gene46900:CDS |
| AGAGCTGTCTGAATGAAATG+AGG | 0.554066 | 3.1:+86300569 | MS.gene46900:CDS |
| TCAAATATCTCATTGCAACA+AGG | 0.556883 | 3.1:-86299005 | None:intergenic |
| ATCAATGACTTGCGAGAGAG+AGG | 0.557776 | 3.1:+86298846 | MS.gene46900:CDS |
| TTTCGCCGCAATCATTGCAA+AGG | 0.558309 | 3.1:-86301210 | None:intergenic |
| ACCTGTTTGACCTGATGGCG+GGG | 0.562153 | 3.1:-86299432 | None:intergenic |
| GCACTCAAATTGAAGAGGCT+CGG | 0.562219 | 3.1:-86298721 | None:intergenic |
| AGTGAGCATCATGGGAGAAG+TGG | 0.570618 | 3.1:+86298686 | None:intergenic |
| ATCAATTGCGGTGTGTGCAT+GGG | 0.579084 | 3.1:+86299849 | MS.gene46900:CDS |
| TCATTGCACTCAAATTGAAG+AGG | 0.591774 | 3.1:-86298726 | None:intergenic |
| CAAATATCTCATTGCAACAA+GGG | 0.593446 | 3.1:-86299004 | None:intergenic |
| GAGCTGTCTGAATGAAATGA+GGG | 0.595369 | 3.1:+86300570 | MS.gene46900:CDS |
| AAATTCCACAACCACTGCAA+TGG | 0.598547 | 3.1:-86299929 | None:intergenic |
| CAAACTGACTTTGAGCACAA+AGG | 0.599345 | 3.1:-86300704 | None:intergenic |
| TTCTTCCACTGCTACAAGTG+TGG | 0.601466 | 3.1:+86300202 | MS.gene46900:CDS |
| TCAAATGAAGAGCACATGCA+TGG | 0.607616 | 3.1:+86298789 | MS.gene46900:CDS |
| ACTTACCACACTTGTAGCAG+TGG | 0.608628 | 3.1:-86300207 | None:intergenic |
| AAATATCTCATTGCAACAAG+GGG | 0.613018 | 3.1:-86299003 | None:intergenic |
| ACTCTGTGAGACTGAACAAG+AGG | 0.613028 | 3.1:+86299573 | MS.gene46900:CDS |
| TATAACACAAGACAAACAAG+AGG | 0.622837 | 3.1:+86301286 | MS.gene46900:CDS |
| GCATTGCTCCTTCCACGCAA+GGG | 0.626467 | 3.1:-86300362 | None:intergenic |
| TTGTCGCCATTGTCACAATG+AGG | 0.627282 | 3.1:+86299028 | MS.gene46900:CDS |
| ATACCTGTTTGACCTGATGG+CGG | 0.637436 | 3.1:-86299434 | None:intergenic |
| CAGCAGAACTGTATCAATTG+CGG | 0.643368 | 3.1:+86299837 | MS.gene46900:CDS |
| CAATGACAGGAATCTTATCA+CGG | 0.652971 | 3.1:+86298743 | MS.gene46900:CDS |
| AAGCAGCAGTACCATTGCAG+TGG | 0.661184 | 3.1:+86299918 | MS.gene46900:CDS |
| TGTATGGCCGCAATGCAACA+CGG | 0.679908 | 3.1:-86300539 | None:intergenic |
| GATGTCTCCGTGTTGCATTG+CGG | 0.707696 | 3.1:+86300532 | MS.gene46900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAAGTCAAAT+TGG | - | chr3.1:86301010-86301029 | None:intergenic | 10.0% |
| !! | ATATAAAATAAAGTCAAATT+GGG | - | chr3.1:86301009-86301028 | None:intergenic | 10.0% |
| !!! | ATTTGACTTTATTTTATATT+TGG | + | chr3.1:86301010-86301029 | MS.gene46900:intron | 10.0% |
| !! | TTCTAAATGATATAATGAAA+TGG | - | chr3.1:86299763-86299782 | None:intergenic | 15.0% |
| !!! | AAATCATTAATTTTTTACGA+TGG | - | chr3.1:86298939-86298958 | None:intergenic | 15.0% |
| !! | TACAATATAATCCTCATTTA+TGG | - | chr3.1:86299143-86299162 | None:intergenic | 20.0% |
| !! | TCTCAAAATTAATAACTGTT+TGG | - | chr3.1:86299696-86299715 | None:intergenic | 20.0% |
| !! | TGAACCATATCTTAATAAAA+TGG | + | chr3.1:86300784-86300803 | MS.gene46900:CDS | 20.0% |
| !! | TGTTATGAAATTACTTATGA+CGG | + | chr3.1:86299646-86299665 | MS.gene46900:intron | 20.0% |
| !!! | ATATGTTTTAAAAACAGAAC+TGG | + | chr3.1:86300166-86300185 | MS.gene46900:intron | 20.0% |
| !!! | ATTTTATTAAGATATGGTTC+AGG | - | chr3.1:86300785-86300804 | None:intergenic | 20.0% |
| !!! | CTTACCATTTTATTAAGATA+TGG | - | chr3.1:86300791-86300810 | None:intergenic | 20.0% |
| !!! | TTCATTATATCATTTAGAAC+TGG | + | chr3.1:86299764-86299783 | MS.gene46900:intron | 20.0% |
| !!! | TTTGTATTTGATTTTGTATC+AGG | + | chr3.1:86300672-86300691 | MS.gene46900:intron | 20.0% |
| ! | AAATAATGATCAATCCTGTT+TGG | - | chr3.1:86301092-86301111 | None:intergenic | 25.0% |
| ! | ACAAATCACTACAATTGAAA+TGG | - | chr3.1:86300645-86300664 | None:intergenic | 25.0% |
| ! | ACTTATGACTTAGAATGAAA+TGG | + | chr3.1:86299296-86299315 | MS.gene46900:intron | 25.0% |
| ! | AGATTGAAAAGCAAATAGTA+TGG | - | chr3.1:86298902-86298921 | None:intergenic | 25.0% |
| ! | ATAGAAATAGTCTATACACA+GGG | + | chr3.1:86301035-86301054 | MS.gene46900:intron | 25.0% |
| ! | CAAAATCAAATACAAAGTTC+AGG | - | chr3.1:86300668-86300687 | None:intergenic | 25.0% |
| ! | CAAAATTAATAACTGTTTGG+AGG | - | chr3.1:86299693-86299712 | None:intergenic | 25.0% |
| ! | CAAATTTCATAGACAACTTT+AGG | + | chr3.1:86299257-86299276 | MS.gene46900:intron | 25.0% |
| ! | CATAAATTCAACAAATTGAC+AGG | - | chr3.1:86300451-86300470 | None:intergenic | 25.0% |
| ! | GATTGAAAAGCAAATAGTAT+GGG | - | chr3.1:86298901-86298920 | None:intergenic | 25.0% |
| ! | TACTCAACTTTGTTGAAAAA+CGG | + | chr3.1:86300336-86300355 | MS.gene46900:CDS | 25.0% |
| ! | TATAGAAATAGTCTATACAC+AGG | + | chr3.1:86301034-86301053 | MS.gene46900:intron | 25.0% |
| ! | TCAATACAAACAAGTCTAAA+AGG | - | chr3.1:86300818-86300837 | None:intergenic | 25.0% |
| ! | TGATTTATATATCGAGACTT+TGG | + | chr3.1:86300101-86300120 | MS.gene46900:intron | 25.0% |
| ! | TTAAAACTCTCGAATTTCTT+GGG | + | chr3.1:86299172-86299191 | MS.gene46900:intron | 25.0% |
| ! | TTTAGCTAACTTAACCAAAT+TGG | - | chr3.1:86299981-86300000 | None:intergenic | 25.0% |
| !!! | CAAATTGGTTAGCTTATTAT+CGG | - | chr3.1:86299966-86299985 | None:intergenic | 25.0% |
| !!! | CTGTCAATTTGTTGAATTTA+TGG | + | chr3.1:86300449-86300468 | MS.gene46900:intron | 25.0% |
| !!! | TAATTTTTTACGATGGCAAA+GGG | - | chr3.1:86298932-86298951 | None:intergenic | 25.0% |
| !!! | TCAATTTGTTGAATTTATGG+AGG | + | chr3.1:86300452-86300471 | MS.gene46900:intron | 25.0% |
| !!! | TTAATTTTTTACGATGGCAA+AGG | - | chr3.1:86298933-86298952 | None:intergenic | 25.0% |
| AAAATTGCAGATCTTCAATG+AGG | - | chr3.1:86299477-86299496 | None:intergenic | 30.0% | |
| AAATATCTCATTGCAACAAG+GGG | - | chr3.1:86299006-86299025 | None:intergenic | 30.0% | |
| AAGAAAAACAGTTATGAAGC+AGG | - | chr3.1:86300290-86300309 | None:intergenic | 30.0% | |
| AGAAAAAGTCATATCAACCT+TGG | - | chr3.1:86300035-86300054 | None:intergenic | 30.0% | |
| ATTGTTACCTCAAAACAAAC+AGG | - | chr3.1:86300399-86300418 | None:intergenic | 30.0% | |
| CAAATATCTCATTGCAACAA+GGG | - | chr3.1:86299007-86299026 | None:intergenic | 30.0% | |
| CGATAATAAGCTAACCAATT+TGG | + | chr3.1:86299964-86299983 | MS.gene46900:intron | 30.0% | |
| CTGTTCAGATATTTCATGTA+TGG | + | chr3.1:86299099-86299118 | MS.gene46900:intron | 30.0% | |
| GAAAAAGTCATATCAACCTT+GGG | - | chr3.1:86300034-86300053 | None:intergenic | 30.0% | |
| GAACATATCACCTGAAAAAT+TGG | - | chr3.1:86299553-86299572 | None:intergenic | 30.0% | |
| GCTTATCTCAGTTTATCTAT+TGG | - | chr3.1:86300973-86300992 | None:intergenic | 30.0% | |
| GTTAAAACTCTCGAATTTCT+TGG | + | chr3.1:86299171-86299190 | MS.gene46900:intron | 30.0% | |
| TATAACACAAGACAAACAAG+AGG | + | chr3.1:86301286-86301305 | MS.gene46900:CDS | 30.0% | |
| TCAAATATCTCATTGCAACA+AGG | - | chr3.1:86299008-86299027 | None:intergenic | 30.0% | |
| TCATCATGTACATAGTTGTA+TGG | - | chr3.1:86301134-86301153 | None:intergenic | 30.0% | |
| TCTTCATAACTTCTTTGCAT+AGG | + | chr3.1:86300306-86300325 | MS.gene46900:intron | 30.0% | |
| TTCAGATATTTCATGTATGG+TGG | + | chr3.1:86299102-86299121 | MS.gene46900:intron | 30.0% | |
| TTGTGATATGTCAAAGGTTT+GGG | + | chr3.1:86300724-86300743 | MS.gene46900:CDS | 30.0% | |
| TTTGTGATATGTCAAAGGTT+TGG | + | chr3.1:86300723-86300742 | MS.gene46900:CDS | 30.0% | |
| ! | AATGAATGCTCCAATTTTTC+AGG | + | chr3.1:86299540-86299559 | MS.gene46900:intron | 30.0% |
| !!! | ATTAAGCTGTTTTTCCAAAC+AGG | + | chr3.1:86301075-86301094 | MS.gene46900:intron | 30.0% |
| !!! | CTGTTGTTATTTTTCTGATG+AGG | + | chr3.1:86299510-86299529 | MS.gene46900:intron | 30.0% |
| !!! | GTTTTAAAAACAGAACTGGA+GGG | + | chr3.1:86300170-86300189 | MS.gene46900:intron | 30.0% |
| !!! | TCTTGTTTTTCCTTTTCTCT+TGG | + | chr3.1:86300054-86300073 | MS.gene46900:intron | 30.0% |
| !!! | TGTTTTAAAAACAGAACTGG+AGG | + | chr3.1:86300169-86300188 | MS.gene46900:intron | 30.0% |
| AAAGTCAAATTGGGTCTCTT+TGG | - | chr3.1:86301000-86301019 | None:intergenic | 35.0% | |
| AATACTGCGATCACCAATTT+CGG | - | chr3.1:86300495-86300514 | None:intergenic | 35.0% | |
| AGAGAGGATATATGGAGTAT+GGG | + | chr3.1:86298862-86298881 | MS.gene46900:CDS | 35.0% | |
| CAATGACAGGAATCTTATCA+CGG | + | chr3.1:86298743-86298762 | MS.gene46900:CDS | 35.0% | |
| CACAGTCTAGTATTTCATGA+TGG | + | chr3.1:86299068-86299087 | MS.gene46900:intron | 35.0% | |
| CATAACTACACTACCGAAAT+TGG | + | chr3.1:86300479-86300498 | MS.gene46900:intron | 35.0% | |
| CTTATTGCTTGCCATAAATG+AGG | + | chr3.1:86299129-86299148 | MS.gene46900:intron | 35.0% | |
| GGTTTGGGAAAAAATTGACT+TGG | + | chr3.1:86300739-86300758 | MS.gene46900:CDS | 35.0% | |
| GTCAGTTTGTGATATGTCAA+AGG | + | chr3.1:86300718-86300737 | MS.gene46900:CDS | 35.0% | |
| TCATTGCACTCAAATTGAAG+AGG | - | chr3.1:86298729-86298748 | None:intergenic | 35.0% | |
| TCTGTAGATGTCAACATTAC+CGG | + | chr3.1:86298961-86298980 | MS.gene46900:intron | 35.0% | |
| TTAAGATATGGTTCAGGCAT+CGG | - | chr3.1:86300779-86300798 | None:intergenic | 35.0% | |
| TTCAATTTGAGTGCAATGAC+AGG | + | chr3.1:86298730-86298749 | MS.gene46900:CDS | 35.0% | |
| TTTCATTCAGACAGCTCTTA+TGG | - | chr3.1:86300567-86300586 | None:intergenic | 35.0% | |
| ! | AAACTGACTTTGAGCACAAA+GGG | - | chr3.1:86300706-86300725 | None:intergenic | 35.0% |
| ! | ATTTTGTTCATATGCCATCG+TGG | + | chr3.1:86301108-86301127 | MS.gene46900:intron | 35.0% |
| ! | GCAAGTCATTGATCTTTTTG+TGG | - | chr3.1:86298839-86298858 | None:intergenic | 35.0% |
| ! | TCATTGATCTTTTTGTGGTC+TGG | - | chr3.1:86298834-86298853 | None:intergenic | 35.0% |
| ! | TGTTGCTTAACCAAGAGAAA+AGG | - | chr3.1:86300067-86300086 | None:intergenic | 35.0% |
| !! | GGAAAAAATTGACTTGGAAC+TGG | + | chr3.1:86300745-86300764 | MS.gene46900:CDS | 35.0% |
| !!! | AGACTTTGGTGCACTTTTTT+TGG | + | chr3.1:86300115-86300134 | MS.gene46900:intron | 35.0% |
| !!! | AGATTGTCCTGTTTGTTTTG+AGG | + | chr3.1:86300389-86300408 | MS.gene46900:CDS | 35.0% |
| !!! | TGCATGGGCAATTATTTTTG+CGG | + | chr3.1:86299864-86299883 | MS.gene46900:CDS | 35.0% |
| AAATTCCACAACCACTGCAA+TGG | - | chr3.1:86299932-86299951 | None:intergenic | 40.0% | |
| AACATACCTGTTTGACCTGA+TGG | - | chr3.1:86299440-86299459 | None:intergenic | 40.0% | |
| AATGTATTGTCCCTATCCCA+AGG | + | chr3.1:86300015-86300034 | MS.gene46900:intron | 40.0% | |
| AGAGCTGTCTGAATGAAATG+AGG | + | chr3.1:86300569-86300588 | MS.gene46900:CDS | 40.0% | |
| AGTCATATCAACCTTGGGAT+AGG | - | chr3.1:86300029-86300048 | None:intergenic | 40.0% | |
| ATGCATGTGCTCTTCATTTG+AGG | - | chr3.1:86298790-86298809 | None:intergenic | 40.0% | |
| ATTGCAGATCTTCAATGAGG+TGG | - | chr3.1:86299474-86299493 | None:intergenic | 40.0% | |
| ATTTGATGCACTCTCTTGAC+AGG | + | chr3.1:86301180-86301199 | MS.gene46900:intron | 40.0% | |
| CAAATTGGGTCTCTTTGGAT+TGG | - | chr3.1:86300995-86301014 | None:intergenic | 40.0% | |
| CAGCAGAACTGTATCAATTG+CGG | + | chr3.1:86299837-86299856 | MS.gene46900:CDS | 40.0% | |
| GAGAGAGGATATATGGAGTA+TGG | + | chr3.1:86298861-86298880 | MS.gene46900:CDS | 40.0% | |
| GAGCTGTCTGAATGAAATGA+GGG | + | chr3.1:86300570-86300589 | MS.gene46900:CDS | 40.0% | |
| GTCATATCAACCTTGGGATA+GGG | - | chr3.1:86300028-86300047 | None:intergenic | 40.0% | |
| TGCATGTGCTCTTCATTTGA+GGG | - | chr3.1:86298789-86298808 | None:intergenic | 40.0% | |
| TGGATCCTTTGCAATGATTG+CGG | + | chr3.1:86301205-86301224 | MS.gene46900:CDS | 40.0% | |
| TTTGTGCGACAAGATGAAAC+TGG | - | chr3.1:86301246-86301265 | None:intergenic | 40.0% | |
| ! | CAAACTGACTTTGAGCACAA+AGG | - | chr3.1:86300707-86300726 | None:intergenic | 40.0% |
| ! | CAAGAGAGTGCATCAAATCT+TGG | - | chr3.1:86301178-86301197 | None:intergenic | 40.0% |
| ! | CTGCAGCATCACTTTCATTT+TGG | + | chr3.1:86299342-86299361 | MS.gene46900:intron | 40.0% |
| ! | CTTTTGCCTCATTGTGACAA+TGG | - | chr3.1:86299037-86299056 | None:intergenic | 40.0% |
| ! | GACAGCTCTTATGGATTGTA+TGG | - | chr3.1:86300558-86300577 | None:intergenic | 40.0% |
| ! | TCAAATGAAGAGCACATGCA+TGG | + | chr3.1:86298789-86298808 | MS.gene46900:CDS | 40.0% |
| ! | TCTTTTTGTGGTCTGGTGAT+TGG | - | chr3.1:86298827-86298846 | None:intergenic | 40.0% |
| !!! | GCATGGGCAATTATTTTTGC+GGG | + | chr3.1:86299865-86299884 | MS.gene46900:CDS | 40.0% |
| ACATAGTTGTATGGCCACGA+TGG | - | chr3.1:86301125-86301144 | None:intergenic | 45.0% | |
| ACTCTGTGAGACTGAACAAG+AGG | + | chr3.1:86299573-86299592 | MS.gene46900:CDS | 45.0% | |
| ACTTACCACACTTGTAGCAG+TGG | - | chr3.1:86300210-86300229 | None:intergenic | 45.0% | |
| ATACCTGTTTGACCTGATGG+CGG | - | chr3.1:86299437-86299456 | None:intergenic | 45.0% | |
| ATCAATTGCGGTGTGTGCAT+GGG | + | chr3.1:86299849-86299868 | MS.gene46900:CDS | 45.0% | |
| ATGCACTCTCTTGACAGGTT+TGG | + | chr3.1:86301185-86301204 | MS.gene46900:intron | 45.0% | |
| CCTGGAAGCAGAAGATATCA+AGG | - | chr3.1:86299815-86299834 | None:intergenic | 45.0% | |
| CCTTGATATCTTCTGCTTCC+AGG | + | chr3.1:86299812-86299831 | MS.gene46900:intron | 45.0% | |
| CTTGCGAGAGAGAGGATATA+TGG | + | chr3.1:86298854-86298873 | MS.gene46900:CDS | 45.0% | |
| GATGTCAACATTACCGGAGA+AGG | + | chr3.1:86298967-86298986 | MS.gene46900:intron | 45.0% | |
| GCACTCAAATTGAAGAGGCT+CGG | - | chr3.1:86298724-86298743 | None:intergenic | 45.0% | |
| TATCAATTGCGGTGTGTGCA+TGG | + | chr3.1:86299848-86299867 | MS.gene46900:CDS | 45.0% | |
| TGATACAGTTCTGCTGAACC+TGG | - | chr3.1:86299833-86299852 | None:intergenic | 45.0% | |
| TTCTTCCACTGCTACAAGTG+TGG | + | chr3.1:86300202-86300221 | MS.gene46900:CDS | 45.0% | |
| TTGTCGCCATTGTCACAATG+AGG | + | chr3.1:86299028-86299047 | MS.gene46900:CDS | 45.0% | |
| TTTCGCCGCAATCATTGCAA+AGG | - | chr3.1:86301213-86301232 | None:intergenic | 45.0% | |
| ! | ATCAATGACTTGCGAGAGAG+AGG | + | chr3.1:86298846-86298865 | MS.gene46900:CDS | 45.0% |
| AAGCAGCAGTACCATTGCAG+TGG | + | chr3.1:86299918-86299937 | MS.gene46900:CDS | 50.0% | |
| CAGTACCATTGCAGTGGTTG+TGG | + | chr3.1:86299924-86299943 | MS.gene46900:CDS | 50.0% | |
| CCCTAATACGACACCTTCTC+CGG | - | chr3.1:86298983-86299002 | None:intergenic | 50.0% | |
| GATGTCTCCGTGTTGCATTG+CGG | + | chr3.1:86300532-86300551 | MS.gene46900:CDS | 50.0% | |
| GCAGTGGTTGTGGAATTTGC+AGG | + | chr3.1:86299934-86299953 | MS.gene46900:CDS | 50.0% | |
| TACCTGTTTGACCTGATGGC+GGG | - | chr3.1:86299436-86299455 | None:intergenic | 50.0% | |
| TGTATGGCCGCAATGCAACA+CGG | - | chr3.1:86300542-86300561 | None:intergenic | 50.0% | |
| !! | ACCGGAGAAGGTGTCGTATT+AGG | + | chr3.1:86298979-86298998 | MS.gene46900:CDS | 50.0% |
| !! | CCGGAGAAGGTGTCGTATTA+GGG | + | chr3.1:86298980-86298999 | MS.gene46900:CDS | 50.0% |
| GAAAAACGGTCACCCTTGCG+TGG | + | chr3.1:86300350-86300369 | MS.gene46900:CDS | 55.0% | |
| GCATTGCTCCTTCCACGCAA+GGG | - | chr3.1:86300365-86300384 | None:intergenic | 55.0% | |
| TGCATTGCTCCTTCCACGCA+AGG | - | chr3.1:86300366-86300385 | None:intergenic | 55.0% | |
| ! | ACCTGTTTGACCTGATGGCG+GGG | - | chr3.1:86299435-86299454 | None:intergenic | 55.0% |
| AACGGTCACCCTTGCGTGGA+AGG | + | chr3.1:86300354-86300373 | MS.gene46900:CDS | 60.0% | |
| ACACGACATTCCCCGCCATC+AGG | + | chr3.1:86299422-86299441 | MS.gene46900:CDS | 60.0% | |
| TCCCCGCCATCAGGTCAAAC+AGG | + | chr3.1:86299431-86299450 | MS.gene46900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86298696 | 86301312 | 86298696 | ID=MS.gene46900 |
| chr3.1 | mRNA | 86298696 | 86301312 | 86298696 | ID=MS.gene46900.t1;Parent=MS.gene46900 |
| chr3.1 | exon | 86298696 | 86298883 | 86298696 | ID=MS.gene46900.t1.exon1;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86298696 | 86298883 | 86298696 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86298968 | 86299055 | 86298968 | ID=MS.gene46900.t1.exon2;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86298968 | 86299055 | 86298968 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86299393 | 86299452 | 86299393 | ID=MS.gene46900.t1.exon3;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86299393 | 86299452 | 86299393 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86299562 | 86299594 | 86299562 | ID=MS.gene46900.t1.exon4;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86299562 | 86299594 | 86299562 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86299834 | 86299955 | 86299834 | ID=MS.gene46900.t1.exon5;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86299834 | 86299955 | 86299834 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86300183 | 86300223 | 86300183 | ID=MS.gene46900.t1.exon6;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86300183 | 86300223 | 86300183 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86300328 | 86300410 | 86300328 | ID=MS.gene46900.t1.exon7;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86300328 | 86300410 | 86300328 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86300511 | 86300602 | 86300511 | ID=MS.gene46900.t1.exon8;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86300511 | 86300602 | 86300511 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86300694 | 86300805 | 86300694 | ID=MS.gene46900.t1.exon9;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86300694 | 86300805 | 86300694 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| chr3.1 | exon | 86301202 | 86301312 | 86301202 | ID=MS.gene46900.t1.exon10;Parent=MS.gene46900.t1 |
| chr3.1 | CDS | 86301202 | 86301312 | 86301202 | ID=cds.MS.gene46900.t1;Parent=MS.gene46900.t1 |
| Gene Sequence |
| Protein sequence |
