Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43374.t1 | XP_013467241.1 | 94.7 | 301 | 16 | 0 | 1 | 301 | 1 | 301 | 2.70E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43374.t1 | Q9FFB6 | 69.9 | 256 | 77 | 0 | 45 | 300 | 16 | 271 | 1.3e-96 | 354.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43374.t1 | G7ZXV0 | 94.7 | 301 | 16 | 0 | 1 | 301 | 1 | 301 | 1.9e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049828 | MS.gene43374 | -0.807598 | 4.67E-50 | -1.69E-46 |
| MS.gene052290 | MS.gene43374 | -0.822925 | 1.83E-53 | -1.69E-46 |
| MS.gene053384 | MS.gene43374 | -0.820079 | 8.29E-53 | -1.69E-46 |
| MS.gene055636 | MS.gene43374 | -0.802637 | 5.10E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene43374 | -0.824677 | 7.09E-54 | -1.69E-46 |
| MS.gene056609 | MS.gene43374 | -0.812219 | 4.73E-51 | -1.69E-46 |
| MS.gene058903 | MS.gene43374 | -0.823321 | 1.48E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene43374 | -0.804631 | 1.97E-49 | -1.69E-46 |
| MS.gene059708 | MS.gene43374 | -0.8137 | 2.24E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene43374 | -0.820657 | 6.11E-53 | -1.69E-46 |
| MS.gene060005 | MS.gene43374 | -0.836011 | 1.20E-56 | -1.69E-46 |
| MS.gene060799 | MS.gene43374 | -0.805549 | 1.27E-49 | -1.69E-46 |
| MS.gene060801 | MS.gene43374 | -0.806286 | 8.86E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene43374 | -0.813729 | 2.21E-51 | -1.69E-46 |
| MS.gene061051 | MS.gene43374 | 0.803537 | 3.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43374 | MS.gene00991 | PPI |
| MS.gene43374 | MS.gene09127 | PPI |
| MS.gene96207 | MS.gene43374 | PPI |
| MS.gene43374 | MS.gene007740 | PPI |
| MS.gene43374 | MS.gene03701 | PPI |
| MS.gene43374 | MS.gene004457 | PPI |
| MS.gene43374 | MS.gene002763 | PPI |
| MS.gene43374 | MS.gene049765 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43374.t1 | MTR_1g047740 | 94.684 | 301 | 16 | 0 | 1 | 301 | 1 | 301 | 0.0 | 598 |
| MS.gene43374.t1 | MTR_3g108240 | 74.110 | 309 | 72 | 2 | 1 | 301 | 1 | 309 | 1.39e-171 | 477 |
| MS.gene43374.t1 | MTR_3g108240 | 73.463 | 309 | 72 | 3 | 1 | 301 | 1 | 307 | 7.58e-168 | 468 |
| MS.gene43374.t1 | MTR_7g102990 | 70.238 | 252 | 75 | 0 | 50 | 301 | 18 | 269 | 1.76e-140 | 398 |
| MS.gene43374.t1 | MTR_1g010150 | 83.415 | 205 | 34 | 0 | 97 | 301 | 1 | 205 | 2.33e-131 | 372 |
| MS.gene43374.t1 | MTR_4g057310 | 65.152 | 264 | 87 | 1 | 37 | 300 | 4 | 262 | 3.62e-130 | 371 |
| MS.gene43374.t1 | MTR_2g020040 | 58.000 | 250 | 104 | 1 | 48 | 297 | 10 | 258 | 2.37e-106 | 310 |
| MS.gene43374.t1 | MTR_4g057310 | 63.801 | 221 | 73 | 2 | 29 | 249 | 1 | 214 | 2.06e-103 | 301 |
| MS.gene43374.t1 | MTR_7g102990 | 69.492 | 177 | 54 | 0 | 50 | 226 | 18 | 194 | 9.77e-94 | 277 |
| MS.gene43374.t1 | MTR_8g104410 | 37.545 | 277 | 151 | 7 | 33 | 300 | 736 | 999 | 1.77e-57 | 199 |
| MS.gene43374.t1 | MTR_8g104410 | 37.545 | 277 | 151 | 7 | 33 | 300 | 972 | 1235 | 3.08e-57 | 199 |
| MS.gene43374.t1 | MTR_6g083900 | 38.163 | 283 | 152 | 7 | 30 | 301 | 956 | 1226 | 2.26e-54 | 190 |
| MS.gene43374.t1 | MTR_4g107440 | 36.823 | 277 | 150 | 8 | 26 | 297 | 1013 | 1269 | 1.85e-50 | 179 |
| MS.gene43374.t1 | MTR_1g010170 | 55.769 | 52 | 18 | 1 | 1 | 47 | 1 | 52 | 4.21e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43374.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 6.71e-145 | 410 |
| MS.gene43374.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 6.71e-145 | 410 |
| MS.gene43374.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 6.71e-145 | 410 |
| MS.gene43374.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 6.71e-145 | 410 |
| MS.gene43374.t1 | AT5G25560 | 64.333 | 300 | 90 | 3 | 14 | 301 | 24 | 318 | 4.98e-142 | 403 |
| MS.gene43374.t1 | AT5G25560 | 65.172 | 290 | 89 | 3 | 14 | 301 | 24 | 303 | 2.60e-139 | 395 |
| MS.gene43374.t1 | AT5G22920 | 66.797 | 256 | 85 | 0 | 45 | 300 | 16 | 271 | 3.07e-134 | 382 |
| MS.gene43374.t1 | AT5G22920 | 66.667 | 222 | 74 | 0 | 45 | 266 | 16 | 237 | 1.27e-114 | 330 |
| MS.gene43374.t1 | AT5G18650 | 56.693 | 254 | 109 | 1 | 44 | 297 | 6 | 258 | 3.09e-105 | 308 |
| MS.gene43374.t1 | AT3G62970 | 52.416 | 269 | 125 | 3 | 30 | 298 | 10 | 275 | 9.58e-102 | 300 |
| MS.gene43374.t1 | AT3G62970 | 53.219 | 233 | 107 | 2 | 30 | 262 | 10 | 240 | 4.58e-91 | 271 |
| MS.gene43374.t1 | AT3G62970 | 52.915 | 223 | 103 | 2 | 30 | 252 | 10 | 230 | 6.85e-86 | 258 |
| MS.gene43374.t1 | AT1G74770 | 38.851 | 296 | 155 | 8 | 7 | 297 | 983 | 1257 | 5.84e-60 | 206 |
| MS.gene43374.t1 | AT3G18290 | 38.732 | 284 | 148 | 8 | 30 | 301 | 974 | 1243 | 1.80e-57 | 199 |
| MS.gene43374.t1 | AT1G18910 | 40.727 | 275 | 139 | 8 | 27 | 297 | 998 | 1252 | 6.53e-57 | 198 |
| MS.gene43374.t1 | AT1G74770 | 37.917 | 240 | 123 | 8 | 7 | 241 | 983 | 1201 | 4.50e-43 | 158 |
Find 62 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAAGGATACATGGAATA+TGG | 0.235762 | 1.4:-32688750 | MS.gene43374:CDS |
| ACACCACAGTTAATACAATT+TGG | 0.247115 | 1.4:+32687597 | None:intergenic |
| TCTCGTCTGTCGTGTGTTAT+AGG | 0.247468 | 1.4:+32685677 | None:intergenic |
| AAGGATTCCAGATTTGATTT+TGG | 0.266935 | 1.4:+32688819 | None:intergenic |
| TTGGAGGATTAACGTCTTCT+TGG | 0.305325 | 1.4:+32688838 | None:intergenic |
| CTGTGATATGTCAAGGGTTT+GGG | 0.325412 | 1.4:-32686205 | MS.gene43374:CDS |
| ACCGGAGAAGATGCCGAATC+AGG | 0.341031 | 1.4:-32688632 | MS.gene43374:CDS |
| ACAAATGATTTGCAAGATAA+AGG | 0.341490 | 1.4:-32688765 | MS.gene43374:CDS |
| TGAGCAATACCAAAATAAAA+TGG | 0.342214 | 1.4:-32686145 | MS.gene43374:intron |
| TATTAACTGTGGTGTTTGTA+TGG | 0.349579 | 1.4:-32687589 | MS.gene43374:CDS |
| CACCTGTTTGACTTGGTGTC+GGG | 0.359703 | 1.4:+32688345 | None:intergenic |
| GTCAAGGGTTTGGGAGAGAT+TGG | 0.368404 | 1.4:-32686196 | MS.gene43374:CDS |
| TAATCCTCCAAAATCAAATC+TGG | 0.375712 | 1.4:-32688826 | MS.gene43374:CDS |
| TGGAGGATTAACGTCTTCTT+GGG | 0.398592 | 1.4:+32688839 | None:intergenic |
| TCTGTGATATGTCAAGGGTT+TGG | 0.400427 | 1.4:-32686206 | MS.gene43374:CDS |
| TTGTTGCTTCTCAACTCTGC+TGG | 0.435891 | 1.4:-32686791 | MS.gene43374:CDS |
| TGATTGCCCCGTGTGTTTCG+AGG | 0.440556 | 1.4:-32686731 | MS.gene43374:intron |
| TCAAATCTGGAATCCTTGCC+TGG | 0.447006 | 1.4:-32688813 | MS.gene43374:CDS |
| GATTCACTTGATGCTTCTCC+AGG | 0.447764 | 1.4:+32688795 | None:intergenic |
| CCCTGATTCGGCATCTTCTC+CGG | 0.448395 | 1.4:+32688631 | None:intergenic |
| GCCCCGACACCAAGTCAAAC+AGG | 0.459750 | 1.4:-32688347 | MS.gene43374:intron |
| TGCAACAAGGAGCCCTGATT+CGG | 0.470133 | 1.4:+32688619 | None:intergenic |
| ATAAAGGATACATGGAATAT+GGG | 0.477054 | 1.4:-32688749 | MS.gene43374:intron |
| GCGGAAACACCGGTCATGTT+CGG | 0.481081 | 1.4:-32685737 | MS.gene43374:CDS |
| GTAATGGCTGTGGAATTTGC+AGG | 0.495528 | 1.4:-32687345 | MS.gene43374:intron |
| CAGAACGACTTCGAACATAG+AGG | 0.501864 | 1.4:+32686225 | None:intergenic |
| TTTGCAGATGCCAACACTAC+CGG | 0.517868 | 1.4:-32688650 | MS.gene43374:intron |
| ACTTGATGCTTCTCCAGGCA+AGG | 0.518546 | 1.4:+32688800 | None:intergenic |
| GGCATCTTCTCCGGTAGTGT+TGG | 0.528892 | 1.4:+32688640 | None:intergenic |
| CCGGAGAAGATGCCGAATCA+GGG | 0.533742 | 1.4:-32688631 | MS.gene43374:CDS |
| AAGCAGCAGTACCATTGTAA+TGG | 0.540337 | 1.4:-32687361 | MS.gene43374:CDS |
| CAGTACCATTGTAATGGCTG+TGG | 0.543474 | 1.4:-32687355 | MS.gene43374:CDS |
| TGCAATGACTGCGGAAACAC+CGG | 0.544929 | 1.4:-32685747 | MS.gene43374:CDS |
| ACCTGTTTGACTTGGTGTCG+GGG | 0.548265 | 1.4:+32688346 | None:intergenic |
| ATTAACTGTGGTGTTTGTAT+GGG | 0.551930 | 1.4:-32687588 | MS.gene43374:CDS |
| AACAGTCACACCTGTGTGGA+AGG | 0.553647 | 1.4:-32686766 | MS.gene43374:CDS |
| AAAATGGAACCGAACATGAC+CGG | 0.555237 | 1.4:+32685728 | None:intergenic |
| ACACCTGTTTGACTTGGTGT+CGG | 0.555973 | 1.4:+32688344 | None:intergenic |
| AGTCGTTCTGTGATATGTCA+AGG | 0.560608 | 1.4:-32686212 | MS.gene43374:CDS |
| TGTTTCCGCAGTCATTGCAC+AGG | 0.575987 | 1.4:+32685751 | None:intergenic |
| TTTGCAAGATAAAGGATACA+TGG | 0.576830 | 1.4:-32688757 | MS.gene43374:CDS |
| ACTTTGTGCAACTGAACAAG+AGG | 0.578809 | 1.4:-32688190 | MS.gene43374:intron |
| TGTTATAGGAGTTGCAGTTG+AGG | 0.581082 | 1.4:+32685691 | None:intergenic |
| TTCTTCCATTGTAACAAGTG+TGG | 0.583354 | 1.4:-32686916 | MS.gene43374:intron |
| AAATGTTACCTCGAAACACA+CGG | 0.583489 | 1.4:+32686723 | None:intergenic |
| AATGTTACCTCGAAACACAC+GGG | 0.588310 | 1.4:+32686724 | None:intergenic |
| GTCGTTCTGTGATATGTCAA+GGG | 0.590443 | 1.4:-32686211 | MS.gene43374:CDS |
| GCTTACCACACTTGTTACAA+TGG | 0.603038 | 1.4:+32686911 | None:intergenic |
| ATGAAATGAGAGAACATCAC+CGG | 0.612682 | 1.4:-32686343 | MS.gene43374:intron |
| TTATGGATTGTATGTCCGCA+CGG | 0.613243 | 1.4:+32686377 | None:intergenic |
| AGCTTGTATCATGGGTGATG+TGG | 0.616132 | 1.4:-32688901 | None:intergenic |
| TTGCCGCCATTGTCACAATG+AGG | 0.627282 | 1.4:-32688583 | MS.gene43374:CDS |
| TTGCCTCATTGTGACAATGG+CGG | 0.629473 | 1.4:+32688580 | None:intergenic |
| AGAACGACTTCGAACATAGA+GGG | 0.631596 | 1.4:+32686226 | None:intergenic |
| CAGCCAAATTGTATTAACTG+TGG | 0.635426 | 1.4:-32687600 | MS.gene43374:CDS |
| ATGCATTGCTCCTTCCACAC+AGG | 0.659665 | 1.4:+32686756 | None:intergenic |
| GAAATTGTTGTTATGCCGTG+CGG | 0.662393 | 1.4:-32686392 | MS.gene43374:CDS |
| TATAACACACGACAGACGAG+AGG | 0.688676 | 1.4:-32685675 | MS.gene43374:CDS |
| ATGTTACCTCGAAACACACG+GGG | 0.693054 | 1.4:+32686725 | None:intergenic |
| AAATTCCACAGCCATTACAA+TGG | 0.701862 | 1.4:+32687350 | None:intergenic |
| TGGATCCTGTGCAATGACTG+CGG | 0.725144 | 1.4:-32685756 | MS.gene43374:CDS |
| GGAAAACAGTCACACCTGTG+TGG | 0.726921 | 1.4:-32686770 | MS.gene43374:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTCTATTAGAATTA+AGG | + | chr1.4:32686325-32686344 | None:intergenic | 10.0% |
| !!! | ATAAAGACTAATTTTATAAA+AGG | + | chr1.4:32685893-32685912 | None:intergenic | 10.0% |
| !!! | TGTGATATTTTTAAATTTTT+GGG | - | chr1.4:32686122-32686141 | MS.gene43374:intron | 10.0% |
| !!! | TTGTGATATTTTTAAATTTT+TGG | - | chr1.4:32686121-32686140 | MS.gene43374:intron | 10.0% |
| !! | AAAAAATAGTATATAATCAC+AGG | + | chr1.4:32686536-32686555 | None:intergenic | 15.0% |
| !! | AGTATAAATAATAAACAGTA+AGG | + | chr1.4:32688459-32688478 | None:intergenic | 15.0% |
| !! | ATAGTTATGAATATAATTCA+CGG | - | chr1.4:32687942-32687961 | MS.gene43374:intron | 15.0% |
| !! | ATTATATTCATAACTATTAC+AGG | + | chr1.4:32687939-32687958 | None:intergenic | 15.0% |
| !! | TACTGATATTGAATTTATAA+AGG | - | chr1.4:32686441-32686460 | MS.gene43374:intron | 15.0% |
| !!! | GCAAATGATAAATATTTTAT+GGG | + | chr1.4:32687405-32687424 | None:intergenic | 15.0% |
| !!! | GTGATATTTTTAAATTTTTG+GGG | - | chr1.4:32686123-32686142 | MS.gene43374:intron | 15.0% |
| !!! | TGCAAATGATAAATATTTTA+TGG | + | chr1.4:32687406-32687425 | None:intergenic | 15.0% |
| !! | AAAAACAAAATGAAACAAAG+GGG | + | chr1.4:32687328-32687347 | None:intergenic | 20.0% |
| !! | AAATTACGCTTATGAAAAAT+AGG | + | chr1.4:32686026-32686045 | None:intergenic | 20.0% |
| !! | AACAAATTGCATCATTATTA+GGG | - | chr1.4:32687277-32687296 | MS.gene43374:intron | 20.0% |
| !! | AATAAGAACAATATTCAGAA+AGG | + | chr1.4:32688285-32688304 | None:intergenic | 20.0% |
| !! | ATAAGAACAATATTCAGAAA+GGG | + | chr1.4:32688284-32688303 | None:intergenic | 20.0% |
| !! | ATATCAAAATCAATCAGTTA+AGG | + | chr1.4:32687596-32687615 | None:intergenic | 20.0% |
| !! | ATTTGTGGATATTTCAATTA+AGG | + | chr1.4:32686264-32686283 | None:intergenic | 20.0% |
| !! | CATGCATAAAGAAAATAAAA+TGG | - | chr1.4:32686683-32686702 | MS.gene43374:intron | 20.0% |
| !! | CTTACATGTATATAATCATA+GGG | + | chr1.4:32686661-32686680 | None:intergenic | 20.0% |
| !! | GAAAAACAAAATGAAACAAA+GGG | + | chr1.4:32687329-32687348 | None:intergenic | 20.0% |
| !! | TAAAAAATAAGTAATGAGAC+CGG | + | chr1.4:32686065-32686084 | None:intergenic | 20.0% |
| !! | TAACAAATTGCATCATTATT+AGG | - | chr1.4:32687276-32687295 | MS.gene43374:intron | 20.0% |
| !! | TATTGACATCTTAAATTCAA+GGG | - | chr1.4:32688756-32688775 | MS.gene43374:CDS | 20.0% |
| !! | TGAAAAACAAAATGAAACAA+AGG | + | chr1.4:32687330-32687349 | None:intergenic | 20.0% |
| !! | TGATATTGAATTTATAAAGG+AGG | - | chr1.4:32686444-32686463 | MS.gene43374:intron | 20.0% |
| !! | TTATTGACATCTTAAATTCA+AGG | - | chr1.4:32688755-32688774 | MS.gene43374:CDS | 20.0% |
| !!! | ATGCTAGAGTTATTTTAAAT+TGG | - | chr1.4:32688052-32688071 | MS.gene43374:intron | 20.0% |
| !!! | CTGATACAATAATTTTTTAC+TGG | + | chr1.4:32687995-32688014 | None:intergenic | 20.0% |
| !!! | TGATAAATATTTTATGGGAT+CGG | + | chr1.4:32687400-32687419 | None:intergenic | 20.0% |
| ! | AAAACAAAATGAAACAAAGG+GGG | + | chr1.4:32687327-32687346 | None:intergenic | 25.0% |
| ! | AGATATCTGCATCATATAAA+AGG | + | chr1.4:32687181-32687200 | None:intergenic | 25.0% |
| ! | ATAAAGGATACATGGAATAT+GGG | - | chr1.4:32685813-32685832 | MS.gene43374:intron | 25.0% |
| ! | ATTGACATCTTAAATTCAAG+GGG | - | chr1.4:32688757-32688776 | MS.gene43374:CDS | 25.0% |
| ! | CAAATAAATCCCTAAAAACA+GGG | + | chr1.4:32687461-32687480 | None:intergenic | 25.0% |
| ! | GCTTACATGTATATAATCAT+AGG | + | chr1.4:32686662-32686681 | None:intergenic | 25.0% |
| ! | TAATAAACAGTAAGGAAAAG+AGG | + | chr1.4:32688451-32688470 | None:intergenic | 25.0% |
| ! | TATGCAACATTAGAACAAAA+AGG | + | chr1.4:32687067-32687086 | None:intergenic | 25.0% |
| ! | TCATTGAGAAAAACAAAGAT+TGG | + | chr1.4:32686838-32686857 | None:intergenic | 25.0% |
| ! | TGAGCAATACCAAAATAAAA+TGG | - | chr1.4:32688417-32688436 | MS.gene43374:intron | 25.0% |
| !! | ACAAATGATTTGCAAGATAA+AGG | - | chr1.4:32685797-32685816 | MS.gene43374:intron | 25.0% |
| !! | ACTAATTTTATAAAAGGAGC+AGG | + | chr1.4:32685887-32685906 | None:intergenic | 25.0% |
| !! | GGTAACATTTACAATTTTCA+TGG | - | chr1.4:32687852-32687871 | MS.gene43374:intron | 25.0% |
| !! | TAATTTTGTGCACTTTATTC+AGG | - | chr1.4:32686339-32686358 | MS.gene43374:intron | 25.0% |
| !! | TTTCATCTATACAGCTTTTA+TGG | + | chr1.4:32688205-32688224 | None:intergenic | 25.0% |
| !!! | AAGTCTGCTTTTTATATTTC+TGG | - | chr1.4:32688090-32688109 | MS.gene43374:intron | 25.0% |
| !!! | ATTTTATTTTGGTATTGCTC+AGG | + | chr1.4:32688418-32688437 | None:intergenic | 25.0% |
| !!! | GGTATTTATTTTTGTTCTGT+TGG | - | chr1.4:32688571-32688590 | MS.gene43374:intron | 25.0% |
| !!! | TCTGTTGGTTCATTAATTTT+TGG | - | chr1.4:32688586-32688605 | MS.gene43374:CDS | 25.0% |
| AAAATCAATCAGTTAAGGCA+AGG | + | chr1.4:32687591-32687610 | None:intergenic | 30.0% | |
| AATTGCATCATTATTAGGGA+TGG | - | chr1.4:32687281-32687300 | MS.gene43374:intron | 30.0% | |
| ACACCACAGTTAATACAATT+TGG | + | chr1.4:32686968-32686987 | None:intergenic | 30.0% | |
| ACGCTTATGAAAAATAGGTA+AGG | + | chr1.4:32686021-32686040 | None:intergenic | 30.0% | |
| ATAAAAACACCTGTTTGACT+TGG | + | chr1.4:32686227-32686246 | None:intergenic | 30.0% | |
| ATGATGTGAGTATTAATCCT+AGG | - | chr1.4:32687032-32687051 | MS.gene43374:intron | 30.0% | |
| ATTAACTGTGGTGTTTGTAT+GGG | - | chr1.4:32686974-32686993 | MS.gene43374:intron | 30.0% | |
| CAAAATAGCAAGTACAAACA+TGG | + | chr1.4:32687503-32687522 | None:intergenic | 30.0% | |
| CCAAATAAATCCCTAAAAAC+AGG | + | chr1.4:32687462-32687481 | None:intergenic | 30.0% | |
| CGTTTGACATTCATGATTAT+AGG | - | chr1.4:32687748-32687767 | MS.gene43374:intron | 30.0% | |
| CTATACTTGATATGAATGAC+AGG | + | chr1.4:32688621-32688640 | None:intergenic | 30.0% | |
| CTGCATCATATAAAAGGAAA+CGG | + | chr1.4:32687175-32687194 | None:intergenic | 30.0% | |
| CTTGTATTTGATTGTATACC+AGG | - | chr1.4:32688305-32688324 | MS.gene43374:intron | 30.0% | |
| GATAAAGGATACATGGAATA+TGG | - | chr1.4:32685812-32685831 | MS.gene43374:intron | 30.0% | |
| TAATCCTCCAAAATCAAATC+TGG | - | chr1.4:32685736-32685755 | MS.gene43374:CDS | 30.0% | |
| TATTAACTGTGGTGTTTGTA+TGG | - | chr1.4:32686973-32686992 | MS.gene43374:intron | 30.0% | |
| TCAAAAATCTCATTGCAACA+AGG | + | chr1.4:32685959-32685978 | None:intergenic | 30.0% | |
| TTTGCAAGATAAAGGATACA+TGG | - | chr1.4:32685805-32685824 | MS.gene43374:intron | 30.0% | |
| TTTGTTCATATGCTTCTTTC+TGG | - | chr1.4:32685842-32685861 | MS.gene43374:intron | 30.0% | |
| TTTGTTTCATATCATTCAGC+CGG | - | chr1.4:32686043-32686062 | MS.gene43374:intron | 30.0% | |
| ! | AAATATTTTATGGGATCGGA+GGG | + | chr1.4:32687396-32687415 | None:intergenic | 30.0% |
| ! | TAAATATTTTATGGGATCGG+AGG | + | chr1.4:32687397-32687416 | None:intergenic | 30.0% |
| ! | TTCATGTCTTATTGTTGCTT+TGG | - | chr1.4:32688657-32688676 | MS.gene43374:intron | 30.0% |
| !! | AACAGGTGTTTTTATCAACT+TGG | - | chr1.4:32686232-32686251 | MS.gene43374:CDS | 30.0% |
| !! | AAGGATTCCAGATTTGATTT+TGG | + | chr1.4:32685746-32685765 | None:intergenic | 30.0% |
| !! | ACAGGTGTTTTTATCAACTT+GGG | - | chr1.4:32686233-32686252 | MS.gene43374:CDS | 30.0% |
| !! | ATTTGTTATGTTCCAGACTT+AGG | + | chr1.4:32687264-32687283 | None:intergenic | 30.0% |
| !! | GAGAACTGACCATTTTATTT+TGG | + | chr1.4:32688429-32688448 | None:intergenic | 30.0% |
| !! | TGATGCTTTTTACTACTTTC+AGG | - | chr1.4:32686937-32686956 | MS.gene43374:CDS | 30.0% |
| !!! | CCTGTTTTTAGGGATTTATT+TGG | - | chr1.4:32687459-32687478 | MS.gene43374:intron | 30.0% |
| !!! | GATGGTAACATGTTTTAATG+CGG | - | chr1.4:32687299-32687318 | MS.gene43374:intron | 30.0% |
| !!! | TCAACTTTACCCTGTTTTTA+GGG | - | chr1.4:32687449-32687468 | MS.gene43374:intron | 30.0% |
| !!! | TCTGCTTTTTATATTTCTGG+AGG | - | chr1.4:32688093-32688112 | MS.gene43374:intron | 30.0% |
| !!! | TGATATTTTTTGCACAGAAC+TGG | - | chr1.4:32687610-32687629 | MS.gene43374:intron | 30.0% |
| AAATGTTACCTCGAAACACA+CGG | + | chr1.4:32687842-32687861 | None:intergenic | 35.0% | |
| AAATTCCACAGCCATTACAA+TGG | + | chr1.4:32687215-32687234 | None:intergenic | 35.0% | |
| ACTTGATATGAATGACAGGT+AGG | + | chr1.4:32688617-32688636 | None:intergenic | 35.0% | |
| ATGAAATGAGAGAACATCAC+CGG | - | chr1.4:32688219-32688238 | MS.gene43374:intron | 35.0% | |
| CAAAAAGGAATCTCATTCCT+AGG | + | chr1.4:32687052-32687071 | None:intergenic | 35.0% | |
| CAGCCAAATTGTATTAACTG+TGG | - | chr1.4:32686962-32686981 | MS.gene43374:intron | 35.0% | |
| CATTGAGAGTCAGTTATTTG+TGG | - | chr1.4:32688726-32688745 | MS.gene43374:intron | 35.0% | |
| CGATATGCACATGTATGTAT+TGG | - | chr1.4:32688530-32688549 | MS.gene43374:intron | 35.0% | |
| CTGTTAAGCTTATTACTGTC+TGG | - | chr1.4:32686711-32686730 | MS.gene43374:intron | 35.0% | |
| GAACAATATTCAGAAAGGGA+TGG | + | chr1.4:32688280-32688299 | None:intergenic | 35.0% | |
| GAATATAATACATCCCCACT+AGG | - | chr1.4:32686596-32686615 | MS.gene43374:intron | 35.0% | |
| GCAGGTATGAAATGATAATC+TGG | - | chr1.4:32687235-32687254 | MS.gene43374:intron | 35.0% | |
| GTCCATGAAATAACAGGAAA+AGG | + | chr1.4:32686294-32686313 | None:intergenic | 35.0% | |
| TACCTTGTCCATGAAATAAC+AGG | + | chr1.4:32686300-32686319 | None:intergenic | 35.0% | |
| TCAATGCATATTGAAGGAGA+AGG | + | chr1.4:32688712-32688731 | None:intergenic | 35.0% | |
| TCATGGTTTAGAAACAGCTT+AGG | - | chr1.4:32687869-32687888 | MS.gene43374:intron | 35.0% | |
| TGACTCTCAATGCATATTGA+AGG | + | chr1.4:32688718-32688737 | None:intergenic | 35.0% | |
| TGGATAGAACACTAAGAACT+AGG | - | chr1.4:32688550-32688569 | MS.gene43374:intron | 35.0% | |
| TTAAGCTTATTACTGTCTGG+AGG | - | chr1.4:32686714-32686733 | MS.gene43374:intron | 35.0% | |
| TTCTTCCATTGTAACAAGTG+TGG | - | chr1.4:32687646-32687665 | MS.gene43374:intron | 35.0% | |
| ! | ATAATCTGGTTTCCTAAGTC+TGG | - | chr1.4:32687249-32687268 | MS.gene43374:intron | 35.0% |
| ! | GGAAAAGGTGCAAAAATTTG+TGG | + | chr1.4:32686279-32686298 | None:intergenic | 35.0% |
| !! | ATATAATCATAGGGAGCACT+AGG | + | chr1.4:32686652-32686671 | None:intergenic | 35.0% |
| !! | ATGTCTTATTGTTGCTTTGG+AGG | - | chr1.4:32688660-32688679 | MS.gene43374:intron | 35.0% |
| !! | CAGGTGTTTTTATCAACTTG+GGG | - | chr1.4:32686234-32686253 | MS.gene43374:CDS | 35.0% |
| !! | CTCAACTTTACCCTGTTTTT+AGG | - | chr1.4:32687448-32687467 | MS.gene43374:intron | 35.0% |
| !! | GATTCCAGATTTGATTTTGG+AGG | + | chr1.4:32685743-32685762 | None:intergenic | 35.0% |
| !! | TTCCTGTTATTTCATGGACA+AGG | - | chr1.4:32686295-32686314 | MS.gene43374:intron | 35.0% |
| !!! | CACCTTTTCCTGTTATTTCA+TGG | - | chr1.4:32686289-32686308 | MS.gene43374:intron | 35.0% |
| !!! | TATTTTTTGCACAGAACTGG+TGG | - | chr1.4:32687613-32687632 | MS.gene43374:intron | 35.0% |
| AAAATGGAACCGAACATGAC+CGG | + | chr1.4:32688837-32688856 | None:intergenic | 40.0% | |
| AAACAGTTTCAGCCAGCATA+TGG | + | chr1.4:32686808-32686827 | None:intergenic | 40.0% | |
| AAGCAGCAGTACCATTGTAA+TGG | - | chr1.4:32687201-32687220 | MS.gene43374:intron | 40.0% | |
| AATGTTACCTCGAAACACAC+GGG | + | chr1.4:32687841-32687860 | None:intergenic | 40.0% | |
| ACAGGGTAAAGTTGAGTACT+AGG | + | chr1.4:32687444-32687463 | None:intergenic | 40.0% | |
| ACTTTGTGCAACTGAACAAG+AGG | - | chr1.4:32686372-32686391 | MS.gene43374:CDS | 40.0% | |
| AGAACGACTTCGAACATAGA+GGG | + | chr1.4:32688339-32688358 | None:intergenic | 40.0% | |
| AGTCGTTCTGTGATATGTCA+AGG | - | chr1.4:32688350-32688369 | MS.gene43374:CDS | 40.0% | |
| ATAATACATCCCCACTAGGT+TGG | - | chr1.4:32686600-32686619 | MS.gene43374:intron | 40.0% | |
| ATCAGTTAAGGCAAGGCAAA+AGG | + | chr1.4:32687584-32687603 | None:intergenic | 40.0% | |
| CTGTGATATGTCAAGGGTTT+GGG | - | chr1.4:32688357-32688376 | MS.gene43374:CDS | 40.0% | |
| GATGGAGAAGTAAAGAGACT+AGG | + | chr1.4:32688262-32688281 | None:intergenic | 40.0% | |
| GCAAGGAATTAGAGTCTACA+AGG | + | chr1.4:32686630-32686649 | None:intergenic | 40.0% | |
| GTCGTTCTGTGATATGTCAA+GGG | - | chr1.4:32688351-32688370 | MS.gene43374:CDS | 40.0% | |
| TACACTAGTTATAGACTCGC+TGG | + | chr1.4:32687148-32687167 | None:intergenic | 40.0% | |
| TCTGTGATATGTCAAGGGTT+TGG | - | chr1.4:32688356-32688375 | MS.gene43374:CDS | 40.0% | |
| TGGAGGATTAACGTCTTCTT+GGG | + | chr1.4:32685726-32685745 | None:intergenic | 40.0% | |
| TGTTATAGGAGTTGCAGTTG+AGG | + | chr1.4:32688874-32688893 | None:intergenic | 40.0% | |
| TTGGAGGATTAACGTCTTCT+TGG | + | chr1.4:32685727-32685746 | None:intergenic | 40.0% | |
| ! | ATTCCAGATGTTTTGCGCTA+TGG | - | chr1.4:32686739-32686758 | MS.gene43374:CDS | 40.0% |
| ! | CTTTTGCCTCATTGTGACAA+TGG | + | chr1.4:32685988-32686007 | None:intergenic | 40.0% |
| ! | GAAATTGTTGTTATGCCGTG+CGG | - | chr1.4:32688170-32688189 | MS.gene43374:intron | 40.0% |
| ! | GCTTACCACACTTGTTACAA+TGG | + | chr1.4:32687654-32687673 | None:intergenic | 40.0% |
| ! | TCATGTTCGGTTCCATTTTG+TGG | - | chr1.4:32688838-32688857 | MS.gene43374:CDS | 40.0% |
| ! | TTATGGATTGTATGTCCGCA+CGG | + | chr1.4:32688188-32688207 | None:intergenic | 40.0% |
| ! | TTTTGGTATTGCTCAGGCAT+TGG | + | chr1.4:32688412-32688431 | None:intergenic | 40.0% |
| !!! | GGCATTTTAGAGCCACAAAA+TGG | + | chr1.4:32688853-32688872 | None:intergenic | 40.0% |
| ACAGGATCCAAACCTGTTAC+GGG | + | chr1.4:32688796-32688815 | None:intergenic | 45.0% | |
| ATGTTACCTCGAAACACACG+GGG | + | chr1.4:32687840-32687859 | None:intergenic | 45.0% | |
| CACAGGATCCAAACCTGTTA+CGG | + | chr1.4:32688797-32688816 | None:intergenic | 45.0% | |
| CAGAACGACTTCGAACATAG+AGG | + | chr1.4:32688340-32688359 | None:intergenic | 45.0% | |
| CAGTACCATTGTAATGGCTG+TGG | - | chr1.4:32687207-32687226 | MS.gene43374:intron | 45.0% | |
| CATAGCACAAGACCATATGC+TGG | - | chr1.4:32686793-32686812 | MS.gene43374:CDS | 45.0% | |
| CTACCATAGCGCAAAACATC+TGG | + | chr1.4:32686745-32686764 | None:intergenic | 45.0% | |
| CTGATTGTGTTACCCGTAAC+AGG | - | chr1.4:32688781-32688800 | MS.gene43374:CDS | 45.0% | |
| GATTCACTTGATGCTTCTCC+AGG | + | chr1.4:32685770-32685789 | None:intergenic | 45.0% | |
| GTAATGGCTGTGGAATTTGC+AGG | - | chr1.4:32687217-32687236 | MS.gene43374:intron | 45.0% | |
| TATAACACACGACAGACGAG+AGG | - | chr1.4:32688887-32688906 | MS.gene43374:CDS | 45.0% | |
| TCTCGTCTGTCGTGTGTTAT+AGG | + | chr1.4:32688888-32688907 | None:intergenic | 45.0% | |
| TGTGTTACCCGTAACAGGTT+TGG | - | chr1.4:32688786-32688805 | MS.gene43374:CDS | 45.0% | |
| TTGCCTCATTGTGACAATGG+CGG | + | chr1.4:32685985-32686004 | None:intergenic | 45.0% | |
| TTTGCAGATGCCAACACTAC+CGG | - | chr1.4:32685912-32685931 | MS.gene43374:intron | 45.0% | |
| ! | ACATAGAGGGCATGTATACC+TGG | + | chr1.4:32688326-32688345 | None:intergenic | 45.0% |
| ! | ATTTTATGGGATCGGAGGGA+GGG | + | chr1.4:32687392-32687411 | None:intergenic | 45.0% |
| ! | TATTTTATGGGATCGGAGGG+AGG | + | chr1.4:32687393-32687412 | None:intergenic | 45.0% |
| ! | TCAAATCTGGAATCCTTGCC+TGG | - | chr1.4:32685749-32685768 | MS.gene43374:CDS | 45.0% |
| ! | TTGTTGCTTCTCAACTCTGC+TGG | - | chr1.4:32687771-32687790 | MS.gene43374:intron | 45.0% |
| !! | ACACCTGTTTGACTTGGTGT+CGG | + | chr1.4:32686221-32686240 | None:intergenic | 45.0% |
| !! | CAGCATATGGTCTTGTGCTA+TGG | + | chr1.4:32686795-32686814 | None:intergenic | 45.0% |
| !!! | TACTATTTTTTTTTTTTTTT+TGG | - | chr1.4:32686545-32686564 | MS.gene43374:intron | 5.0% |
| AACAGTCACACCTGTGTGGA+AGG | - | chr1.4:32687796-32687815 | MS.gene43374:intron | 50.0% | |
| ACAAGGTGTGCCAACCTAGT+GGG | + | chr1.4:32686613-32686632 | None:intergenic | 50.0% | |
| ACTTGATGCTTCTCCAGGCA+AGG | + | chr1.4:32685765-32685784 | None:intergenic | 50.0% | |
| ATGCATTGCTCCTTCCACAC+AGG | + | chr1.4:32687809-32687828 | None:intergenic | 50.0% | |
| GGAAAACAGTCACACCTGTG+TGG | - | chr1.4:32687792-32687811 | MS.gene43374:intron | 50.0% | |
| GTCAAGGGTTTGGGAGAGAT+TGG | - | chr1.4:32688366-32688385 | MS.gene43374:CDS | 50.0% | |
| TACAAGGTGTGCCAACCTAG+TGG | + | chr1.4:32686614-32686633 | None:intergenic | 50.0% | |
| TGCAACAAGGAGCCCTGATT+CGG | + | chr1.4:32685946-32685965 | None:intergenic | 50.0% | |
| TGCAATGACTGCGGAAACAC+CGG | - | chr1.4:32688815-32688834 | MS.gene43374:CDS | 50.0% | |
| TGGATCCTGTGCAATGACTG+CGG | - | chr1.4:32688806-32688825 | MS.gene43374:CDS | 50.0% | |
| TGTTTCCGCAGTCATTGCAC+AGG | + | chr1.4:32688814-32688833 | None:intergenic | 50.0% | |
| TTGCCGCCATTGTCACAATG+AGG | - | chr1.4:32685979-32685998 | MS.gene43374:intron | 50.0% | |
| !! | ACCTGTTTGACTTGGTGTCG+GGG | + | chr1.4:32686219-32686238 | None:intergenic | 50.0% |
| !! | ATCATAGGGAGCACTAGGCA+AGG | + | chr1.4:32686647-32686666 | None:intergenic | 50.0% |
| !! | CACCTGTTTGACTTGGTGTC+GGG | + | chr1.4:32686220-32686239 | None:intergenic | 50.0% |
| ACCGGAGAAGATGCCGAATC+AGG | - | chr1.4:32685930-32685949 | MS.gene43374:intron | 55.0% | |
| CAAGGTGTGCCAACCTAGTG+GGG | + | chr1.4:32686612-32686631 | None:intergenic | 55.0% | |
| CCGGAGAAGATGCCGAATCA+GGG | - | chr1.4:32685931-32685950 | MS.gene43374:intron | 55.0% | |
| GCGGAAACACCGGTCATGTT+CGG | - | chr1.4:32688825-32688844 | MS.gene43374:CDS | 55.0% | |
| GGCATCTTCTCCGGTAGTGT+TGG | + | chr1.4:32685925-32685944 | None:intergenic | 55.0% | |
| TGATTGCCCCGTGTGTTTCG+AGG | - | chr1.4:32687831-32687850 | MS.gene43374:intron | 55.0% | |
| !! | CCCTGATTCGGCATCTTCTC+CGG | + | chr1.4:32685934-32685953 | None:intergenic | 55.0% |
| GCCCCGACACCAAGTCAAAC+AGG | - | chr1.4:32686215-32686234 | MS.gene43374:CDS | 60.0% | |
| TTATGGGATCGGAGGGAGGG+TGG | + | chr1.4:32687389-32687408 | None:intergenic | 60.0% | |
| ! | GGAGCTTTGTGAGCGCTCAC+CGG | + | chr1.4:32688241-32688260 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 32685671 | 32688913 | 32685671 | ID=MS.gene43374 |
| chr1.4 | mRNA | 32685671 | 32688913 | 32685671 | ID=MS.gene43374.t1;Parent=MS.gene43374 |
| chr1.4 | exon | 32688750 | 32688913 | 32688750 | ID=MS.gene43374.t1.exon1;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32688750 | 32688913 | 32688750 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32688578 | 32688665 | 32688578 | ID=MS.gene43374.t1.exon2;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32688578 | 32688665 | 32688578 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32688348 | 32688407 | 32688348 | ID=MS.gene43374.t1.exon3;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32688348 | 32688407 | 32688348 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32688191 | 32688223 | 32688191 | ID=MS.gene43374.t1.exon4;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32688191 | 32688223 | 32688191 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32687548 | 32687625 | 32687548 | ID=MS.gene43374.t1.exon5;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32687548 | 32687625 | 32687548 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32687346 | 32687389 | 32687346 | ID=MS.gene43374.t1.exon6;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32687346 | 32687389 | 32687346 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32686917 | 32686957 | 32686917 | ID=MS.gene43374.t1.exon7;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32686917 | 32686957 | 32686917 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32686732 | 32686814 | 32686732 | ID=MS.gene43374.t1.exon8;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32686732 | 32686814 | 32686732 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32686344 | 32686435 | 32686344 | ID=MS.gene43374.t1.exon9;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32686344 | 32686435 | 32686344 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32686146 | 32686257 | 32686146 | ID=MS.gene43374.t1.exon10;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32686146 | 32686257 | 32686146 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| chr1.4 | exon | 32685671 | 32685781 | 32685671 | ID=MS.gene43374.t1.exon11;Parent=MS.gene43374.t1 |
| chr1.4 | CDS | 32685671 | 32685781 | 32685671 | ID=cds.MS.gene43374.t1;Parent=MS.gene43374.t1 |
| Gene Sequence |
| Protein sequence |
