Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004913.t1 | KEH42831.1 | 97.9 | 326 | 7 | 0 | 1 | 326 | 1 | 326 | 6.40E-178 | 633.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004913.t1 | O82616 | 78.2 | 317 | 69 | 0 | 7 | 323 | 5 | 321 | 3.4e-143 | 509.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004913.t1 | A0A072VMK0 | 97.9 | 326 | 7 | 0 | 1 | 326 | 1 | 326 | 4.6e-178 | 633.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039628 | MS.gene004913 | PPI |
| MS.gene61079 | MS.gene004913 | PPI |
| MS.gene004913 | MS.gene46881 | PPI |
| MS.gene032177 | MS.gene004913 | PPI |
| MS.gene056386 | MS.gene004913 | PPI |
| MS.gene004913 | MS.gene88462 | PPI |
| MS.gene004913 | MS.gene003877 | PPI |
| MS.gene004913 | MS.gene28335 | PPI |
| MS.gene63929 | MS.gene004913 | PPI |
| MS.gene046213 | MS.gene004913 | PPI |
| MS.gene004913 | MS.gene93729 | PPI |
| MS.gene004913 | MS.gene98726 | PPI |
| MS.gene85276 | MS.gene004913 | PPI |
| MS.gene004913 | MS.gene052011 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004913.t1 | MTR_1g076850 | 97.853 | 326 | 7 | 0 | 1 | 326 | 1 | 326 | 0.0 | 653 |
| MS.gene004913.t1 | MTR_2g098950 | 66.772 | 316 | 105 | 0 | 8 | 323 | 14 | 329 | 6.64e-159 | 447 |
| MS.gene004913.t1 | MTR_4g067310 | 66.667 | 315 | 105 | 0 | 8 | 322 | 15 | 329 | 9.25e-156 | 439 |
| MS.gene004913.t1 | MTR_6g089480 | 64.401 | 309 | 108 | 2 | 15 | 321 | 1 | 309 | 3.50e-149 | 422 |
| MS.gene004913.t1 | MTR_1g101950 | 63.175 | 315 | 114 | 2 | 8 | 320 | 23 | 337 | 7.67e-148 | 419 |
| MS.gene004913.t1 | MTR_5g079460 | 66.026 | 312 | 105 | 1 | 5 | 315 | 64 | 375 | 5.51e-145 | 414 |
| MS.gene004913.t1 | MTR_6g089480 | 66.543 | 269 | 88 | 2 | 15 | 281 | 1 | 269 | 8.30e-132 | 377 |
| MS.gene004913.t1 | MTR_6g089480 | 66.543 | 269 | 88 | 2 | 15 | 281 | 1 | 269 | 1.08e-131 | 376 |
| MS.gene004913.t1 | MTR_7g075860 | 56.481 | 324 | 137 | 3 | 5 | 324 | 38 | 361 | 3.53e-130 | 375 |
| MS.gene004913.t1 | MTR_1g057810 | 50.637 | 314 | 143 | 4 | 8 | 317 | 253 | 558 | 3.10e-102 | 311 |
| MS.gene004913.t1 | MTR_1g069490 | 49.524 | 315 | 131 | 3 | 8 | 320 | 110 | 398 | 9.79e-102 | 305 |
| MS.gene004913.t1 | MTR_1g069745 | 50.865 | 289 | 128 | 4 | 34 | 320 | 9 | 285 | 1.40e-98 | 293 |
| MS.gene004913.t1 | MTR_1g105150 | 47.452 | 314 | 139 | 5 | 8 | 317 | 253 | 544 | 6.02e-90 | 279 |
| MS.gene004913.t1 | MTR_1g054730 | 45.055 | 273 | 121 | 2 | 48 | 320 | 144 | 387 | 6.15e-74 | 233 |
| MS.gene004913.t1 | MTR_5g044990 | 31.897 | 348 | 198 | 5 | 7 | 318 | 209 | 553 | 7.78e-53 | 182 |
| MS.gene004913.t1 | MTR_4g019165 | 34.906 | 318 | 174 | 4 | 34 | 318 | 133 | 450 | 1.59e-51 | 177 |
| MS.gene004913.t1 | MTR_0046s0180 | 52.427 | 103 | 49 | 0 | 218 | 320 | 7 | 109 | 2.81e-34 | 121 |
| MS.gene004913.t1 | MTR_1g070375 | 25.000 | 336 | 210 | 9 | 3 | 307 | 70 | 394 | 5.36e-14 | 72.8 |
| MS.gene004913.t1 | MTR_1g070375 | 24.662 | 296 | 195 | 7 | 45 | 323 | 1 | 285 | 3.72e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004913.t1 | AT4G10260 | 78.233 | 317 | 69 | 0 | 7 | 323 | 5 | 321 | 0.0 | 522 |
| MS.gene004913.t1 | AT3G59480 | 66.875 | 320 | 106 | 0 | 2 | 321 | 4 | 323 | 2.04e-161 | 453 |
| MS.gene004913.t1 | AT1G06020 | 67.296 | 318 | 104 | 0 | 8 | 325 | 10 | 327 | 3.49e-159 | 449 |
| MS.gene004913.t1 | AT1G06030 | 67.188 | 320 | 105 | 0 | 2 | 321 | 5 | 324 | 7.43e-159 | 447 |
| MS.gene004913.t1 | AT2G31390 | 66.879 | 314 | 104 | 0 | 8 | 321 | 9 | 322 | 2.29e-158 | 446 |
| MS.gene004913.t1 | AT1G66430 | 63.950 | 319 | 114 | 1 | 2 | 319 | 59 | 377 | 2.72e-151 | 430 |
| MS.gene004913.t1 | AT5G51830 | 63.863 | 321 | 114 | 2 | 8 | 326 | 23 | 343 | 1.28e-149 | 424 |
| MS.gene004913.t1 | AT5G51830 | 63.863 | 321 | 114 | 2 | 8 | 326 | 23 | 343 | 1.28e-149 | 424 |
| MS.gene004913.t1 | AT3G54090 | 34.072 | 361 | 190 | 7 | 7 | 320 | 102 | 461 | 6.63e-56 | 189 |
| MS.gene004913.t1 | AT1G50390 | 52.071 | 169 | 52 | 1 | 153 | 321 | 1 | 140 | 1.89e-52 | 170 |
| MS.gene004913.t1 | AT1G69200 | 31.307 | 329 | 190 | 4 | 7 | 300 | 205 | 532 | 5.16e-47 | 167 |
| MS.gene004913.t1 | AT1G06730 | 25.623 | 281 | 188 | 6 | 40 | 307 | 132 | 404 | 1.23e-11 | 65.9 |
| MS.gene004913.t1 | AT1G17160 | 23.973 | 292 | 192 | 7 | 39 | 321 | 105 | 375 | 5.36e-11 | 63.5 |
Find 76 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAAGTCTCTCTCAATTT+TGG | 0.120131 | 1.4:-63092762 | None:intergenic |
| GCAAGAGACCCTTCTATATT+TGG | 0.155547 | 1.4:+63092599 | MS.gene004913:CDS |
| ACCTTCTCTAGCAGCTTTCA+TGG | 0.275867 | 1.4:-63091649 | None:intergenic |
| CAAGAGACCCTTCTATATTT+GGG | 0.290405 | 1.4:+63092600 | MS.gene004913:CDS |
| GGCAGCATTGCCACCAAGTT+TGG | 0.291331 | 1.4:-63090714 | None:intergenic |
| AAGCATACCCCAAATATAGA+AGG | 0.366100 | 1.4:-63092608 | None:intergenic |
| AATACAAAGATATTCCATTA+TGG | 0.367235 | 1.4:+63091579 | MS.gene004913:CDS |
| ACAGCACAAGCCACATTGGC+AGG | 0.372362 | 1.4:-63090689 | None:intergenic |
| TCTGCTGAGGCTGCTAGGTC+TGG | 0.380493 | 1.4:+63091720 | MS.gene004913:CDS |
| AAGAAGCTGTTATGTCTCTA+TGG | 0.387207 | 1.4:+63091970 | MS.gene004913:CDS |
| TGGTTCTGAAATAAGACTAA+TGG | 0.387445 | 1.4:-63091604 | None:intergenic |
| ACATTGGCAGGGGCACCGCC+AGG | 0.390542 | 1.4:-63090677 | None:intergenic |
| CAAATGTCAGGCTTCCTTTG+TGG | 0.390789 | 1.4:+63091694 | MS.gene004913:CDS |
| TAAGACTAATGGATCCATAA+TGG | 0.395043 | 1.4:-63091593 | None:intergenic |
| ATTTCAAAGGAAAGTTTAGT+TGG | 0.395477 | 1.4:-63092886 | None:intergenic |
| CAGGTAGGGGATGATGAGTT+TGG | 0.399164 | 1.4:+63091366 | MS.gene004913:intron |
| TCGCCGAATGATATCACTAA+TGG | 0.409144 | 1.4:-63090584 | None:intergenic |
| GGTCTGGAATCAAAAGCATT+TGG | 0.412730 | 1.4:+63091736 | MS.gene004913:CDS |
| AAGCCTGACATTTGGATCAT+AGG | 0.423973 | 1.4:-63091685 | None:intergenic |
| ACCATGCAGATCTGCTCATA+TGG | 0.424309 | 1.4:+63091623 | MS.gene004913:CDS |
| TTTGTGACATTGAGGAAAGA+TGG | 0.427613 | 1.4:+63091474 | MS.gene004913:CDS |
| AGTTTAGTTGGCTTTAAAGC+TGG | 0.434323 | 1.4:-63092874 | None:intergenic |
| GCTTGTGCTGTGTCCAAACT+TGG | 0.436119 | 1.4:+63090701 | MS.gene004913:CDS |
| ATAACAGCTTCTTCATTCTC+AGG | 0.444898 | 1.4:-63091960 | None:intergenic |
| CACAAAGGAAGCCTGACATT+TGG | 0.445582 | 1.4:-63091693 | None:intergenic |
| GTGAAGGCAATTGACACAAC+TGG | 0.456721 | 1.4:+63092536 | MS.gene004913:CDS |
| AGACACATCTGGTGTATCCT+TGG | 0.457720 | 1.4:+63090628 | MS.gene004913:CDS |
| TTCTGAGCCTCTTCAGCAGT+TGG | 0.458744 | 1.4:-63092843 | None:intergenic |
| TCCTTTGTGGCCTTCTGCTG+AGG | 0.474259 | 1.4:+63091707 | MS.gene004913:CDS |
| AAGAAGAAGAACAAGATGTC+AGG | 0.478396 | 1.4:+63090551 | None:intergenic |
| ATTGAGGAAAGATGGAGAGA+GGG | 0.488808 | 1.4:+63091482 | MS.gene004913:CDS |
| ATTGGCAGGGGCACCGCCAG+GGG | 0.492610 | 1.4:-63090675 | None:intergenic |
| GGCCTTCTGCTGAGGCTGCT+AGG | 0.493211 | 1.4:+63091715 | MS.gene004913:CDS |
| TGCACTTCCAACTGCTGAAG+AGG | 0.495831 | 1.4:+63092836 | MS.gene004913:CDS |
| CATTGGCAGGGGCACCGCCA+GGG | 0.499364 | 1.4:-63090676 | None:intergenic |
| GATCCATTAGTGATATCATT+CGG | 0.499392 | 1.4:+63090581 | MS.gene004913:CDS |
| TCTTCAGCAGTTGGAAGTGC+AGG | 0.503583 | 1.4:-63092834 | None:intergenic |
| ATTAAGAACCTTGCCGATGA+AGG | 0.504091 | 1.4:-63090735 | None:intergenic |
| GACCTAGCAGCCTCAGCAGA+AGG | 0.506010 | 1.4:-63091717 | None:intergenic |
| AAGGATACACCAGATGTGTC+TGG | 0.508328 | 1.4:-63090626 | None:intergenic |
| AAGCTGCTTATTATCACTGA+TGG | 0.515902 | 1.4:+63092005 | MS.gene004913:CDS |
| TGTGCTGTGTCCAAACTTGG+TGG | 0.518945 | 1.4:+63090704 | MS.gene004913:CDS |
| CACAGAGGCAAGAACTGCAT+TGG | 0.524471 | 1.4:+63091449 | MS.gene004913:CDS |
| AGCAGTTGGAAGTGCAGGAA+TGG | 0.528605 | 1.4:-63092829 | None:intergenic |
| TTGACATTTGCAAATGCTTG+TGG | 0.529294 | 1.4:+63092780 | MS.gene004913:CDS |
| TGTCCTATGATCCAAATGTC+AGG | 0.532074 | 1.4:+63091682 | MS.gene004913:CDS |
| AATCAAAAGCATTTGGAATG+AGG | 0.534914 | 1.4:+63091743 | MS.gene004913:CDS |
| CATTGAGGAAAGATGGAGAG+AGG | 0.536347 | 1.4:+63091481 | MS.gene004913:CDS |
| TATTATCACTGATGGAGAGA+AGG | 0.541140 | 1.4:+63092013 | MS.gene004913:CDS |
| GGTGGCAATGCTGCCTTCAT+CGG | 0.543040 | 1.4:+63090722 | MS.gene004913:CDS |
| TTCAGTAACATATCAGCACT+AGG | 0.548072 | 1.4:-63091525 | None:intergenic |
| GCAATTGACACAACTGGTGC+TGG | 0.548770 | 1.4:+63092542 | MS.gene004913:CDS |
| TATGCTTTCATCAAAGCCCC+TGG | 0.549304 | 1.4:+63090659 | MS.gene004913:CDS |
| GAATGAGGCTGATTTCATCA+AGG | 0.550630 | 1.4:+63091758 | MS.gene004913:CDS |
| ATTATCACTGATGGAGAGAA+GGG | 0.554637 | 1.4:+63092014 | MS.gene004913:CDS |
| TAGGGGATGATGAGTTTGGA+AGG | 0.562525 | 1.4:+63091370 | MS.gene004913:CDS |
| CAGCACAAGCCACATTGGCA+GGG | 0.565146 | 1.4:-63090688 | None:intergenic |
| AGCACAAGCCACATTGGCAG+GGG | 0.566309 | 1.4:-63090687 | None:intergenic |
| GCCTCAGCAGAAGGCCACAA+AGG | 0.575264 | 1.4:-63091708 | None:intergenic |
| TCAGTAACATATCAGCACTA+GGG | 0.589086 | 1.4:-63091524 | None:intergenic |
| AGCATACCCCAAATATAGAA+GGG | 0.593760 | 1.4:-63092607 | None:intergenic |
| GGACACAGCACAAGCCACAT+TGG | 0.596726 | 1.4:-63090693 | None:intergenic |
| GCCATGAAAGCTGCTAGAGA+AGG | 0.601701 | 1.4:+63091648 | MS.gene004913:CDS |
| CAATGCTGCCTTCATCGGCA+AGG | 0.604108 | 1.4:+63090727 | MS.gene004913:CDS |
| TGGCGGTGCCCCTGCCAATG+TGG | 0.604697 | 1.4:+63090679 | MS.gene004913:CDS |
| AGCAATGTGTACAACACAGA+AGG | 0.614417 | 1.4:+63092803 | MS.gene004913:CDS |
| GGGTTGTAGATATGTCACTA+AGG | 0.615724 | 1.4:+63092034 | MS.gene004913:CDS |
| GCCATATGAGCAGATCTGCA+TGG | 0.617266 | 1.4:-63091624 | None:intergenic |
| AAGAGACCCTTCTATATTTG+GGG | 0.620591 | 1.4:+63092601 | MS.gene004913:CDS |
| GGTAAGTGGGTTCTCAGTGA+AGG | 0.620599 | 1.4:+63092520 | MS.gene004913:CDS |
| GAAAGAATCTGAATTGAACA+TGG | 0.634038 | 1.4:+63091545 | MS.gene004913:CDS |
| GCAATGTGTACAACACAGAA+GGG | 0.647308 | 1.4:+63092804 | MS.gene004913:CDS |
| TGGTGCACTTCTCAGAGATG+TGG | 0.663280 | 1.4:+63092577 | MS.gene004913:CDS |
| ATGAAAGCTGCTAGAGAAGG+TGG | 0.665141 | 1.4:+63091651 | MS.gene004913:CDS |
| GAAAGCATAAGATTCAGCCA+AGG | 0.678603 | 1.4:-63090645 | None:intergenic |
| GCTTTCATCAAAGCCCCTGG+CGG | 0.681461 | 1.4:+63090662 | MS.gene004913:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAATCTTCTTGAA+TGG | - | chr1.4:63092193-63092212 | None:intergenic | 15.0% |
| !! | TAAAAATAATCTTCTTGAAT+GGG | - | chr1.4:63092192-63092211 | None:intergenic | 15.0% |
| !! | TTTGTAAAAATAATTCTCAT+TGG | + | chr1.4:63092695-63092714 | MS.gene004913:intron | 15.0% |
| !!! | AATGAGAATTATTTTTACAA+AGG | - | chr1.4:63092696-63092715 | None:intergenic | 15.0% |
| !!! | ATAGAATATTGATAATATGA+GGG | + | chr1.4:63091266-63091285 | MS.gene004913:intron | 15.0% |
| !!! | ATTTTTATCTATTCACAAAT+AGG | + | chr1.4:63092205-63092224 | MS.gene004913:intron | 15.0% |
| !!! | TATAGAATATTGATAATATG+AGG | + | chr1.4:63091265-63091284 | MS.gene004913:intron | 15.0% |
| !!! | TTGAATTTGAAATTTCTTTA+TGG | + | chr1.4:63091793-63091812 | MS.gene004913:intron | 15.0% |
| !!! | TTTTTATCTATTCACAAATA+GGG | + | chr1.4:63092206-63092225 | MS.gene004913:intron | 15.0% |
| !! | AATACAAAGATATTCCATTA+TGG | + | chr1.4:63091579-63091598 | MS.gene004913:CDS | 20.0% |
| !! | ATAAATTTCAATGACCATAT+TGG | - | chr1.4:63091006-63091025 | None:intergenic | 20.0% |
| !! | ATATGGTCATTGAAATTTAT+AGG | + | chr1.4:63091006-63091025 | MS.gene004913:intron | 20.0% |
| !! | GATAAACATGATAGTAAAAT+GGG | - | chr1.4:63090772-63090791 | None:intergenic | 20.0% |
| !! | TTTAAAAGAATCTGTAAAAG+TGG | + | chr1.4:63091866-63091885 | MS.gene004913:intron | 20.0% |
| !!! | GCATTCATTTTAAGTATATA+TGG | - | chr1.4:63090809-63090828 | None:intergenic | 20.0% |
| ! | AAACTTACCATTCTCTATAT+AGG | + | chr1.4:63091899-63091918 | MS.gene004913:intron | 25.0% |
| ! | AAGATAAAATTAAGTCAAGC+TGG | - | chr1.4:63092384-63092403 | None:intergenic | 25.0% |
| ! | AGATAAAATTAAGTCAAGCT+GGG | - | chr1.4:63092383-63092402 | None:intergenic | 25.0% |
| ! | ATACTTAAAATGAATGCGTA+TGG | + | chr1.4:63090812-63090831 | MS.gene004913:intron | 25.0% |
| ! | CGATAAACATGATAGTAAAA+TGG | - | chr1.4:63090773-63090792 | None:intergenic | 25.0% |
| ! | CTTTATTGAATTCAACATGA+AGG | + | chr1.4:63092734-63092753 | MS.gene004913:intron | 25.0% |
| ! | TACTTAAAATGAATGCGTAT+GGG | + | chr1.4:63090813-63090832 | MS.gene004913:intron | 25.0% |
| ! | TATGGAAGTCTATTAAATGA+TGG | + | chr1.4:63091811-63091830 | MS.gene004913:intron | 25.0% |
| ! | TCAAACAATATTTCCAAAGA+TGG | - | chr1.4:63092480-63092499 | None:intergenic | 25.0% |
| ! | TTATCTTATCAAATGCATCT+CGG | + | chr1.4:63091149-63091168 | MS.gene004913:intron | 25.0% |
| ! | TTCTGAGTAAATATCCAATA+TGG | + | chr1.4:63090989-63091008 | MS.gene004913:intron | 25.0% |
| !! | AAAGAGCTCTTTTCAAAATA+TGG | - | chr1.4:63092075-63092094 | None:intergenic | 25.0% |
| !! | GTTTGAATGCAGAATTTTAA+AGG | + | chr1.4:63092494-63092513 | MS.gene004913:intron | 25.0% |
| !! | TTTTGTTAACTGATCATTAG+TGG | + | chr1.4:63092126-63092145 | MS.gene004913:intron | 25.0% |
| !!! | AATGCAGAATTTTAAAGGAA+GGG | + | chr1.4:63092499-63092518 | MS.gene004913:intron | 25.0% |
| !!! | TCGTATGTCATTTTTTTGTT+AGG | - | chr1.4:63091346-63091365 | None:intergenic | 25.0% |
| !!! | TTTTCAAAATATGGATTGGA+TGG | - | chr1.4:63092066-63092085 | None:intergenic | 25.0% |
| AAAAATGGAGTGAATACAGA+TGG | + | chr1.4:63091414-63091433 | MS.gene004913:CDS | 30.0% | |
| ACAAAAAAATGACATACGAC+AGG | + | chr1.4:63091347-63091366 | MS.gene004913:intron | 30.0% | |
| ATTTACGTATAGTCTACCAA+CGG | - | chr1.4:63090906-63090925 | None:intergenic | 30.0% | |
| CTAAACTATTCATCCATCTT+TGG | + | chr1.4:63092464-63092483 | MS.gene004913:intron | 30.0% | |
| GAAAATAGGATAGCAACTTA+TGG | - | chr1.4:63092323-63092342 | None:intergenic | 30.0% | |
| GAAAGAATCTGAATTGAACA+TGG | + | chr1.4:63091545-63091564 | MS.gene004913:CDS | 30.0% | |
| GAGGATATAACAGAAAACTA+GGG | + | chr1.4:63091833-63091852 | MS.gene004913:intron | 30.0% | |
| GAGTAGATATCCTGTTTAAT+CGG | - | chr1.4:63091315-63091334 | None:intergenic | 30.0% | |
| GATCCATTAGTGATATCATT+CGG | + | chr1.4:63090581-63090600 | MS.gene004913:CDS | 30.0% | |
| GTTTGATGTGGTATTATATG+AGG | + | chr1.4:63090942-63090961 | MS.gene004913:intron | 30.0% | |
| TATGGAGAGCTTATGAAAAT+AGG | - | chr1.4:63092337-63092356 | None:intergenic | 30.0% | |
| TCACTTACCTATATAGAGAA+TGG | - | chr1.4:63091909-63091928 | None:intergenic | 30.0% | |
| TTGATAAGATAACACAACTG+AGG | - | chr1.4:63091141-63091160 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGCTACTA+TGG | - | chr1.4:63092355-63092374 | None:intergenic | 30.0% |
| ! | GCTCTTTTCAAAATATGGAT+TGG | - | chr1.4:63092070-63092089 | None:intergenic | 30.0% |
| ! | TAAGACTAATGGATCCATAA+TGG | - | chr1.4:63091596-63091615 | None:intergenic | 30.0% |
| !! | AATCAAAAGCATTTGGAATG+AGG | + | chr1.4:63091743-63091762 | MS.gene004913:CDS | 30.0% |
| !! | AATTTTAAAGGAAGGGTAAG+TGG | + | chr1.4:63092506-63092525 | MS.gene004913:CDS | 30.0% |
| !! | ATTTTAAAGGAAGGGTAAGT+GGG | + | chr1.4:63092507-63092526 | MS.gene004913:CDS | 30.0% |
| !! | GAATGCAGAATTTTAAAGGA+AGG | + | chr1.4:63092498-63092517 | MS.gene004913:intron | 30.0% |
| !! | TGGTTCTGAAATAAGACTAA+TGG | - | chr1.4:63091607-63091626 | None:intergenic | 30.0% |
| AAAAATGACATACGACAGGT+AGG | + | chr1.4:63091351-63091370 | MS.gene004913:intron | 35.0% | |
| AAAATGACATACGACAGGTA+GGG | + | chr1.4:63091352-63091371 | MS.gene004913:intron | 35.0% | |
| AAGAAGCTGTTATGTCTCTA+TGG | + | chr1.4:63091970-63091989 | MS.gene004913:CDS | 35.0% | |
| AAGAGACCCTTCTATATTTG+GGG | + | chr1.4:63092601-63092620 | MS.gene004913:CDS | 35.0% | |
| AAGCATACCCCAAATATAGA+AGG | - | chr1.4:63092611-63092630 | None:intergenic | 35.0% | |
| AAGCTGCTTATTATCACTGA+TGG | + | chr1.4:63092005-63092024 | MS.gene004913:CDS | 35.0% | |
| AGCATACCCCAAATATAGAA+GGG | - | chr1.4:63092610-63092629 | None:intergenic | 35.0% | |
| ATAACAGCTTCTTCATTCTC+AGG | - | chr1.4:63091963-63091982 | None:intergenic | 35.0% | |
| ATAGCCTCCGTAAATATGAA+TGG | + | chr1.4:63091201-63091220 | MS.gene004913:intron | 35.0% | |
| ATTATCACTGATGGAGAGAA+GGG | + | chr1.4:63092014-63092033 | MS.gene004913:CDS | 35.0% | |
| CAAGAGACCCTTCTATATTT+GGG | + | chr1.4:63092600-63092619 | MS.gene004913:CDS | 35.0% | |
| CGGAGGCTATTAAATTGAAA+TGG | - | chr1.4:63091191-63091210 | None:intergenic | 35.0% | |
| CGTCCTTCCATTCATATTTA+CGG | - | chr1.4:63091211-63091230 | None:intergenic | 35.0% | |
| CTATACGTAAATATTCACCG+AGG | + | chr1.4:63090914-63090933 | MS.gene004913:intron | 35.0% | |
| GACTAGATTGATATGGTCAA+GGG | + | chr1.4:63091288-63091307 | MS.gene004913:intron | 35.0% | |
| GCAGACATCTTGAAGAAAAA+TGG | + | chr1.4:63091399-63091418 | MS.gene004913:CDS | 35.0% | |
| GGAAGTCTATTAAATGATGG+AGG | + | chr1.4:63091814-63091833 | MS.gene004913:intron | 35.0% | |
| GGAGGATATAACAGAAAACT+AGG | + | chr1.4:63091832-63091851 | MS.gene004913:intron | 35.0% | |
| GTAAATATTCACCGAGGTTA+TGG | + | chr1.4:63090920-63090939 | MS.gene004913:intron | 35.0% | |
| TATGAGGGACTAGATTGATA+TGG | + | chr1.4:63091281-63091300 | MS.gene004913:intron | 35.0% | |
| TATTATCACTGATGGAGAGA+AGG | + | chr1.4:63092013-63092032 | MS.gene004913:CDS | 35.0% | |
| TCAGTAACATATCAGCACTA+GGG | - | chr1.4:63091527-63091546 | None:intergenic | 35.0% | |
| TGTTCGAAACAGTCTTACAA+GGG | - | chr1.4:63092274-63092293 | None:intergenic | 35.0% | |
| TTCAGTAACATATCAGCACT+AGG | - | chr1.4:63091528-63091547 | None:intergenic | 35.0% | |
| TTGACATTTGCAAATGCTTG+TGG | + | chr1.4:63092780-63092799 | MS.gene004913:CDS | 35.0% | |
| TTGTTCGAAACAGTCTTACA+AGG | - | chr1.4:63092275-63092294 | None:intergenic | 35.0% | |
| TTTACGTATAGTCTACCAAC+GGG | - | chr1.4:63090905-63090924 | None:intergenic | 35.0% | |
| TTTGTGACATTGAGGAAAGA+TGG | + | chr1.4:63091474-63091493 | MS.gene004913:CDS | 35.0% | |
| ! | GTATTTTTCTGTCACTAGAG+TGG | - | chr1.4:63092658-63092677 | None:intergenic | 35.0% |
| ! | GTCAAAGTCTCTCTCAATTT+TGG | - | chr1.4:63092765-63092784 | None:intergenic | 35.0% |
| AAATGACATACGACAGGTAG+GGG | + | chr1.4:63091353-63091372 | MS.gene004913:intron | 40.0% | |
| AAGCCTGACATTTGGATCAT+AGG | - | chr1.4:63091688-63091707 | None:intergenic | 40.0% | |
| ACCACATCAAACCATAACCT+CGG | - | chr1.4:63090934-63090953 | None:intergenic | 40.0% | |
| AGCAATGTGTACAACACAGA+AGG | + | chr1.4:63092803-63092822 | MS.gene004913:CDS | 40.0% | |
| AGTCTTACAAGGGCTTATGT+CGG | - | chr1.4:63092264-63092283 | None:intergenic | 40.0% | |
| ATTAAGAACCTTGCCGATGA+AGG | - | chr1.4:63090738-63090757 | None:intergenic | 40.0% | |
| ATTGAGGAAAGATGGAGAGA+GGG | + | chr1.4:63091482-63091501 | MS.gene004913:CDS | 40.0% | |
| CCTCCGTAAATATGAATGGA+AGG | + | chr1.4:63091205-63091224 | MS.gene004913:intron | 40.0% | |
| CCTTCCATTCATATTTACGG+AGG | - | chr1.4:63091208-63091227 | None:intergenic | 40.0% | |
| GCAAGAGACCCTTCTATATT+TGG | + | chr1.4:63092599-63092618 | MS.gene004913:CDS | 40.0% | |
| GCAATGTGTACAACACAGAA+GGG | + | chr1.4:63092804-63092823 | MS.gene004913:CDS | 40.0% | |
| GGACTAGATTGATATGGTCA+AGG | + | chr1.4:63091287-63091306 | MS.gene004913:intron | 40.0% | |
| GGGTTGTAGATATGTCACTA+AGG | + | chr1.4:63092034-63092053 | MS.gene004913:CDS | 40.0% | |
| TAAATCGCAGCTAATGCAAG+CGG | - | chr1.4:63090863-63090882 | None:intergenic | 40.0% | |
| TCGCCGAATGATATCACTAA+TGG | - | chr1.4:63090587-63090606 | None:intergenic | 40.0% | |
| TGTCCTATGATCCAAATGTC+AGG | + | chr1.4:63091682-63091701 | MS.gene004913:CDS | 40.0% | |
| TTACGTATAGTCTACCAACG+GGG | - | chr1.4:63090904-63090923 | None:intergenic | 40.0% | |
| ! | GAAAGCATAAGATTCAGCCA+AGG | - | chr1.4:63090648-63090667 | None:intergenic | 40.0% |
| ! | GAATGAGGCTGATTTCATCA+AGG | + | chr1.4:63091758-63091777 | MS.gene004913:CDS | 40.0% |
| ! | GATTTTGTTCCAGACACATC+TGG | + | chr1.4:63090617-63090636 | MS.gene004913:CDS | 40.0% |
| ! | TGGTGTTCTTTTTGACACAG+AGG | + | chr1.4:63091434-63091453 | MS.gene004913:CDS | 40.0% |
| !! | GGTCTGGAATCAAAAGCATT+TGG | + | chr1.4:63091736-63091755 | MS.gene004913:CDS | 40.0% |
| !!! | CATTGGCTTTTGTGACATTG+AGG | + | chr1.4:63091466-63091485 | MS.gene004913:CDS | 40.0% |
| AAGGATACACCAGATGTGTC+TGG | - | chr1.4:63090629-63090648 | None:intergenic | 45.0% | |
| ACCATGCAGATCTGCTCATA+TGG | + | chr1.4:63091623-63091642 | MS.gene004913:CDS | 45.0% | |
| ACCGAGGTTATGGTTTGATG+TGG | + | chr1.4:63090930-63090949 | MS.gene004913:intron | 45.0% | |
| ACCTTCTCTAGCAGCTTTCA+TGG | - | chr1.4:63091652-63091671 | None:intergenic | 45.0% | |
| AGACACATCTGGTGTATCCT+TGG | + | chr1.4:63090628-63090647 | MS.gene004913:CDS | 45.0% | |
| ATGAAAGCTGCTAGAGAAGG+TGG | + | chr1.4:63091651-63091670 | MS.gene004913:CDS | 45.0% | |
| CAAATGTCAGGCTTCCTTTG+TGG | + | chr1.4:63091694-63091713 | MS.gene004913:CDS | 45.0% | |
| CACAAAGGAAGCCTGACATT+TGG | - | chr1.4:63091696-63091715 | None:intergenic | 45.0% | |
| CATTGAGGAAAGATGGAGAG+AGG | + | chr1.4:63091481-63091500 | MS.gene004913:CDS | 45.0% | |
| GCTTGCATTAGCTGCGATTT+AGG | + | chr1.4:63090862-63090881 | MS.gene004913:intron | 45.0% | |
| GTGAAGGCAATTGACACAAC+TGG | + | chr1.4:63092536-63092555 | MS.gene004913:CDS | 45.0% | |
| TAGGGGATGATGAGTTTGGA+AGG | + | chr1.4:63091370-63091389 | MS.gene004913:CDS | 45.0% | |
| TATGCTTTCATCAAAGCCCC+TGG | + | chr1.4:63090659-63090678 | MS.gene004913:CDS | 45.0% | |
| !!! | GGTGCTGGTGATTCTTTTGT+TGG | + | chr1.4:63092557-63092576 | MS.gene004913:CDS | 45.0% |
| CACAGAGGCAAGAACTGCAT+TGG | + | chr1.4:63091449-63091468 | MS.gene004913:CDS | 50.0% | |
| CAGGTAGGGGATGATGAGTT+TGG | + | chr1.4:63091366-63091385 | MS.gene004913:intron | 50.0% | |
| CTAATCGAGAGTTTCCCCGT+TGG | + | chr1.4:63090887-63090906 | MS.gene004913:intron | 50.0% | |
| GCAATTGACACAACTGGTGC+TGG | + | chr1.4:63092542-63092561 | MS.gene004913:CDS | 50.0% | |
| GCCATATGAGCAGATCTGCA+TGG | - | chr1.4:63091627-63091646 | None:intergenic | 50.0% | |
| GCCATGAAAGCTGCTAGAGA+AGG | + | chr1.4:63091648-63091667 | MS.gene004913:CDS | 50.0% | |
| GCTTGTGCTGTGTCCAAACT+TGG | + | chr1.4:63090701-63090720 | MS.gene004913:CDS | 50.0% | |
| GGTCAAGGGACCGATTAAAC+AGG | + | chr1.4:63091302-63091321 | MS.gene004913:intron | 50.0% | |
| TGCACTTCCAACTGCTGAAG+AGG | + | chr1.4:63092836-63092855 | MS.gene004913:CDS | 50.0% | |
| TGGTGCACTTCTCAGAGATG+TGG | + | chr1.4:63092577-63092596 | MS.gene004913:CDS | 50.0% | |
| TGTGCTGTGTCCAAACTTGG+TGG | + | chr1.4:63090704-63090723 | MS.gene004913:CDS | 50.0% | |
| TTCTGAGCCTCTTCAGCAGT+TGG | - | chr1.4:63092846-63092865 | None:intergenic | 50.0% | |
| ! | AGCAGTTGGAAGTGCAGGAA+TGG | - | chr1.4:63092832-63092851 | None:intergenic | 50.0% |
| ! | GGTAAGTGGGTTCTCAGTGA+AGG | + | chr1.4:63092520-63092539 | MS.gene004913:CDS | 50.0% |
| ! | TCTTCAGCAGTTGGAAGTGC+AGG | - | chr1.4:63092837-63092856 | None:intergenic | 50.0% |
| ACAGCACAAGCCACATTGGC+AGG | - | chr1.4:63090692-63090711 | None:intergenic | 55.0% | |
| AGCACAAGCCACATTGGCAG+GGG | - | chr1.4:63090690-63090709 | None:intergenic | 55.0% | |
| CAATGCTGCCTTCATCGGCA+AGG | + | chr1.4:63090727-63090746 | MS.gene004913:CDS | 55.0% | |
| CAGCACAAGCCACATTGGCA+GGG | - | chr1.4:63090691-63090710 | None:intergenic | 55.0% | |
| GCTTTCATCAAAGCCCCTGG+CGG | + | chr1.4:63090662-63090681 | MS.gene004913:CDS | 55.0% | |
| GGACACAGCACAAGCCACAT+TGG | - | chr1.4:63090696-63090715 | None:intergenic | 55.0% | |
| GGCAGCATTGCCACCAAGTT+TGG | - | chr1.4:63090717-63090736 | None:intergenic | 55.0% | |
| GGTGGCAATGCTGCCTTCAT+CGG | + | chr1.4:63090722-63090741 | MS.gene004913:CDS | 55.0% | |
| TCCTTTGTGGCCTTCTGCTG+AGG | + | chr1.4:63091707-63091726 | MS.gene004913:CDS | 55.0% | |
| TCGCAGCTAATGCAAGCGGA+AGG | - | chr1.4:63090859-63090878 | None:intergenic | 55.0% | |
| GACCTAGCAGCCTCAGCAGA+AGG | - | chr1.4:63091720-63091739 | None:intergenic | 60.0% | |
| GCCTCAGCAGAAGGCCACAA+AGG | - | chr1.4:63091711-63091730 | None:intergenic | 60.0% | |
| TCTGCTGAGGCTGCTAGGTC+TGG | + | chr1.4:63091720-63091739 | MS.gene004913:CDS | 60.0% | |
| GGCCTTCTGCTGAGGCTGCT+AGG | + | chr1.4:63091715-63091734 | MS.gene004913:CDS | 65.0% | |
| TGGCGGTGCCCCTGCCAATG+TGG | + | chr1.4:63090679-63090698 | MS.gene004913:CDS | 70.0% | |
| !! | ACATTGGCAGGGGCACCGCC+AGG | - | chr1.4:63090680-63090699 | None:intergenic | 70.0% |
| !! | ATTGGCAGGGGCACCGCCAG+GGG | - | chr1.4:63090678-63090697 | None:intergenic | 70.0% |
| !! | CATTGGCAGGGGCACCGCCA+GGG | - | chr1.4:63090679-63090698 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 63090566 | 63092893 | 63090566 | ID=MS.gene004913 |
| chr1.4 | mRNA | 63090566 | 63092893 | 63090566 | ID=MS.gene004913.t1;Parent=MS.gene004913 |
| chr1.4 | exon | 63090566 | 63090748 | 63090566 | ID=MS.gene004913.t1.exon1;Parent=MS.gene004913.t1 |
| chr1.4 | CDS | 63090566 | 63090748 | 63090566 | ID=cds.MS.gene004913.t1;Parent=MS.gene004913.t1 |
| chr1.4 | exon | 63091369 | 63091779 | 63091369 | ID=MS.gene004913.t1.exon2;Parent=MS.gene004913.t1 |
| chr1.4 | CDS | 63091369 | 63091779 | 63091369 | ID=cds.MS.gene004913.t1;Parent=MS.gene004913.t1 |
| chr1.4 | exon | 63091921 | 63092055 | 63091921 | ID=MS.gene004913.t1.exon3;Parent=MS.gene004913.t1 |
| chr1.4 | CDS | 63091921 | 63092055 | 63091921 | ID=cds.MS.gene004913.t1;Parent=MS.gene004913.t1 |
| chr1.4 | exon | 63092506 | 63092622 | 63092506 | ID=MS.gene004913.t1.exon4;Parent=MS.gene004913.t1 |
| chr1.4 | CDS | 63092506 | 63092622 | 63092506 | ID=cds.MS.gene004913.t1;Parent=MS.gene004913.t1 |
| chr1.4 | exon | 63092756 | 63092893 | 63092756 | ID=MS.gene004913.t1.exon5;Parent=MS.gene004913.t1 |
| chr1.4 | CDS | 63092756 | 63092893 | 63092756 | ID=cds.MS.gene004913.t1;Parent=MS.gene004913.t1 |
| Gene Sequence |
| Protein sequence |
