Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005346.t1 | XP_013469086.1 | 97.3 | 337 | 9 | 0 | 1 | 337 | 1 | 337 | 4.40E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005346.t1 | F4K1B4 | 74.3 | 331 | 84 | 1 | 7 | 337 | 6 | 335 | 2.8e-68 | 260.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005346.t1 | A0A072VM81 | 97.3 | 337 | 9 | 0 | 1 | 337 | 1 | 337 | 3.2e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005346 | MS.gene058831 | PPI |
| MS.gene21056 | MS.gene005346 | PPI |
| MS.gene74542 | MS.gene005346 | PPI |
| MS.gene005346 | MS.gene023667 | PPI |
| MS.gene005346 | MS.gene03069 | PPI |
| MS.gene40748 | MS.gene005346 | PPI |
| MS.gene02100 | MS.gene005346 | PPI |
| MS.gene20985 | MS.gene005346 | PPI |
| MS.gene005346 | MS.gene20985 | PPI |
| MS.gene005346 | MS.gene47863 | PPI |
| MS.gene27907 | MS.gene005346 | PPI |
| MS.gene058821 | MS.gene005346 | PPI |
| MS.gene005346 | MS.gene003302 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005346.t1 | MTR_1g484830 | 96.736 | 337 | 11 | 0 | 1 | 337 | 1 | 337 | 0.0 | 648 |
| MS.gene005346.t1 | MTR_7g012670 | 73.214 | 56 | 13 | 1 | 136 | 191 | 2 | 55 | 2.49e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005346.t1 | AT5G26770 | 70.270 | 333 | 94 | 2 | 7 | 337 | 6 | 335 | 5.34e-164 | 461 |
| MS.gene005346.t1 | AT5G26770 | 70.270 | 333 | 94 | 2 | 7 | 337 | 6 | 335 | 5.34e-164 | 461 |
| MS.gene005346.t1 | AT5G26770 | 65.730 | 356 | 94 | 3 | 7 | 337 | 6 | 358 | 1.40e-158 | 448 |
| MS.gene005346.t1 | AT5G26770 | 65.730 | 356 | 94 | 3 | 7 | 337 | 6 | 358 | 1.40e-158 | 448 |
| MS.gene005346.t1 | AT5G26770 | 64.264 | 333 | 94 | 3 | 7 | 337 | 6 | 315 | 2.01e-144 | 410 |
| MS.gene005346.t1 | AT1G09470 | 61.162 | 327 | 126 | 1 | 11 | 337 | 11 | 336 | 1.74e-135 | 389 |
| MS.gene005346.t1 | AT5G26770 | 69.643 | 280 | 85 | 0 | 7 | 286 | 6 | 285 | 1.39e-134 | 385 |
| MS.gene005346.t1 | AT3G05830 | 63.314 | 338 | 121 | 3 | 1 | 337 | 1 | 336 | 1.10e-132 | 381 |
| MS.gene005346.t1 | AT3G05830 | 63.314 | 338 | 121 | 3 | 1 | 337 | 1 | 336 | 1.10e-132 | 381 |
| MS.gene005346.t1 | AT3G05830 | 60.969 | 351 | 121 | 4 | 1 | 337 | 1 | 349 | 3.94e-129 | 373 |
| MS.gene005346.t1 | AT1G09470 | 59.939 | 327 | 129 | 2 | 11 | 337 | 11 | 335 | 9.89e-129 | 371 |
| MS.gene005346.t1 | AT1G09470 | 59.939 | 327 | 129 | 2 | 11 | 337 | 11 | 335 | 9.89e-129 | 371 |
| MS.gene005346.t1 | AT1G09483 | 67.925 | 106 | 32 | 2 | 233 | 337 | 1 | 105 | 2.25e-42 | 142 |
Find 59 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTTGATCCTTTGTTAA+AGG | 0.155858 | 1.1:-62674930 | MS.gene005346:CDS |
| AAAAGCAAAATCAGAATTTC+TGG | 0.170355 | 1.1:-62671953 | MS.gene005346:CDS |
| TAGAATTGAGCGTGATATTA+TGG | 0.255210 | 1.1:-62672779 | MS.gene005346:CDS |
| ATTCATCTTCTCTATATTCT+TGG | 0.267671 | 1.1:+62672690 | None:intergenic |
| TTGTGAACTGCGAAAATTAT+TGG | 0.291074 | 1.1:-62672725 | MS.gene005346:CDS |
| TGGTAAATTGCAGAAGAAAT+TGG | 0.293833 | 1.1:-62674513 | MS.gene005346:CDS |
| GTCTTTAGCTTCTGAGTTGA+AGG | 0.308444 | 1.1:-62674867 | MS.gene005346:CDS |
| AAGATTATGGAAATGGAAAT+TGG | 0.308528 | 1.1:-62674533 | MS.gene005346:CDS |
| AGAGACAAATGCAAAGATTA+TGG | 0.320596 | 1.1:-62674546 | MS.gene005346:CDS |
| CTTCTGAGTTGAAGGAGCTT+AGG | 0.360827 | 1.1:-62674859 | MS.gene005346:CDS |
| TTCATCTTCTCTATATTCTT+GGG | 0.365124 | 1.1:+62672691 | None:intergenic |
| GAAACAACGGCGTGCTGATC+AGG | 0.366383 | 1.1:-62672442 | MS.gene005346:CDS |
| AAATGCAAAGATTATGGAAA+TGG | 0.386311 | 1.1:-62674540 | MS.gene005346:CDS |
| CAGAATTTCTGGGACACCTC+TGG | 0.394928 | 1.1:-62671942 | MS.gene005346:CDS |
| AATATTGATTCAGCACATAA+AGG | 0.405506 | 1.1:-62673040 | MS.gene005346:intron |
| TAATTTACAGAAGGATCTTA+AGG | 0.405711 | 1.1:-62672842 | MS.gene005346:CDS |
| ATGGAGGCTCTTGCAAAATC+CGG | 0.409298 | 1.1:-62672760 | MS.gene005346:CDS |
| CATCATCCTTAACAACTAGT+AGG | 0.410309 | 1.1:+62672665 | None:intergenic |
| GAAGAAGAGAGTGTTGAAGT+TGG | 0.430394 | 1.1:-62672415 | MS.gene005346:CDS |
| GAATAACCTACTAGTTGTTA+AGG | 0.433462 | 1.1:-62672671 | MS.gene005346:CDS |
| TTAAGATCATGTCTGCTCAT+TGG | 0.439395 | 1.1:-62672618 | MS.gene005346:CDS |
| GAAGGAGCTTAGGAGTCGTT+TGG | 0.443244 | 1.1:-62674849 | MS.gene005346:CDS |
| AGTTATAGTTTCTTTAACAT+AGG | 0.452026 | 1.1:+62674811 | None:intergenic |
| ATCAACTGAAGCTTGTTTGT+CGG | 0.455999 | 1.1:+62674943 | None:intergenic |
| TAGGAGTCGTTTGGCTTCAC+AGG | 0.456534 | 1.1:-62674840 | MS.gene005346:CDS |
| AAAGCAAAATCAGAATTTCT+GGG | 0.467333 | 1.1:-62671952 | MS.gene005346:CDS |
| CTCAGACGCGCAAACTTCAA+AGG | 0.472445 | 1.1:-62672368 | MS.gene005346:CDS |
| GTCTATGTCCATGCTAGTCT+TGG | 0.474536 | 1.1:-62671904 | MS.gene005346:CDS |
| TGATGAAATAGTTAGACTTA+AGG | 0.477477 | 1.1:-62672647 | MS.gene005346:CDS |
| GACTAAGGAATTAGAATCAC+AGG | 0.477639 | 1.1:-62672587 | MS.gene005346:intron |
| TTCAAACTCTTCTGCTGAGA+AGG | 0.479809 | 1.1:-62674465 | MS.gene005346:intron |
| TGGAGGCTCTTGCAAAATCC+GGG | 0.480155 | 1.1:-62672759 | MS.gene005346:CDS |
| CGAGCAGATGGGAGAGCGAC+GGG | 0.486908 | 1.1:-62672039 | MS.gene005346:intron |
| TTCACAATCCTTGTTCTCCC+CGG | 0.489475 | 1.1:+62672741 | None:intergenic |
| GAACTTAAAGATCAATTAGC+AGG | 0.491351 | 1.1:-62672002 | MS.gene005346:CDS |
| TGCAAAATCCGGGGAGAACA+AGG | 0.494274 | 1.1:-62672749 | MS.gene005346:CDS |
| AGGAAAGCAACAAACAGTTT+CGG | 0.509158 | 1.1:-62671982 | MS.gene005346:CDS |
| GATTCAGCACATAAAGGAGT+TGG | 0.509544 | 1.1:-62673034 | MS.gene005346:intron |
| TCATTCAAATCCTTTAACAA+AGG | 0.512856 | 1.1:+62674920 | None:intergenic |
| TATGTCCATGCTAGTCTTGG+TGG | 0.514229 | 1.1:-62671901 | MS.gene005346:CDS |
| ACTGCGAAAATTATTGGATG+AGG | 0.521280 | 1.1:-62672719 | MS.gene005346:CDS |
| TCATTGGAAGCTCAAGACTA+AGG | 0.525004 | 1.1:-62672602 | MS.gene005346:CDS |
| TAAAGAAACTATAACTAGAC+AGG | 0.541041 | 1.1:-62674804 | MS.gene005346:intron |
| ACAGAAGGATCTTAAGGCAA+GGG | 0.550488 | 1.1:-62672836 | MS.gene005346:CDS |
| TACAGAAGGATCTTAAGGCA+AGG | 0.554800 | 1.1:-62672837 | MS.gene005346:CDS |
| CTGCGCTGATTGAGCTGATG+CGG | 0.556870 | 1.1:+62672960 | None:intergenic |
| TCAGACGCGCAAACTTCAAA+GGG | 0.558261 | 1.1:-62672367 | MS.gene005346:intron |
| TTGTTTGTCGGAAATTGACA+TGG | 0.561919 | 1.1:+62674955 | None:intergenic |
| GCAGCTTGATAATTTACAGA+AGG | 0.573568 | 1.1:-62672851 | MS.gene005346:CDS |
| GAAGTTGGAATTCTGTCTGC+AGG | 0.579748 | 1.1:-62672400 | MS.gene005346:CDS |
| TCGAGCAGATGGGAGAGCGA+CGG | 0.608995 | 1.1:-62672040 | MS.gene005346:intron |
| TAGTTCTCTAAGAGAGCATG+AGG | 0.613433 | 1.1:-62672896 | MS.gene005346:CDS |
| AAATACCACCAAGACTAGCA+TGG | 0.627363 | 1.1:+62671896 | None:intergenic |
| AATTGAGCGTGATATTATGG+AGG | 0.642028 | 1.1:-62672776 | MS.gene005346:CDS |
| GAGGAACGCGTACTTAGACT+AGG | 0.642257 | 1.1:-62672877 | MS.gene005346:CDS |
| TGTTTGTCGGAAATTGACAT+GGG | 0.647558 | 1.1:+62674956 | None:intergenic |
| GCTCGTAATAGCTAGAGCAA+CGG | 0.671851 | 1.1:-62672995 | MS.gene005346:CDS |
| AAACACAGTTGGAGAAACAA+CGG | 0.679696 | 1.1:-62672455 | MS.gene005346:intron |
| GGAGGCTCTTGCAAAATCCG+GGG | 0.684234 | 1.1:-62672758 | MS.gene005346:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAACAAAAAGTTT+AGG | - | chr1.1:62672741-62672760 | MS.gene005346:CDS | 10.0% |
| !!! | AAATTTTTGTATCAGTTTTA+CGG | - | chr1.1:62673104-62673123 | MS.gene005346:intron | 15.0% |
| !!! | TTATTTTGTTTTTCTCTTTT+TGG | - | chr1.1:62672130-62672149 | MS.gene005346:intron | 15.0% |
| !! | AAATATAATCCTTAAATTGC+AGG | + | chr1.1:62672259-62672278 | None:intergenic | 20.0% |
| !! | ACTTATAAGATATGATGTAT+AGG | + | chr1.1:62673473-62673492 | None:intergenic | 20.0% |
| !! | AGTTATAGTTTCTTTAACAT+AGG | + | chr1.1:62672029-62672048 | None:intergenic | 20.0% |
| !! | ATGATAAAAAACAAAGCTTT+CGG | - | chr1.1:62671936-62671955 | MS.gene005346:CDS | 20.0% |
| !! | CCATGAAAAGAATAATAATA+AGG | + | chr1.1:62672419-62672438 | None:intergenic | 20.0% |
| !! | GAACTTATAAATAAGAATTC+TGG | + | chr1.1:62673294-62673313 | None:intergenic | 20.0% |
| !! | TTTAAAGGTTAATGCATAAT+TGG | + | chr1.1:62673539-62673558 | None:intergenic | 20.0% |
| !!! | AAGTTACAATTTTTATAGCA+TGG | + | chr1.1:62672156-62672175 | None:intergenic | 20.0% |
| !!! | AATATCAATCATTCTACTTT+TGG | - | chr1.1:62672183-62672202 | MS.gene005346:intron | 20.0% |
| !!! | AATTATTTGACCATTGTTTT+GGG | - | chr1.1:62674603-62674622 | MS.gene005346:intron | 20.0% |
| !!! | CCTTATTATTATTCTTTTCA+TGG | - | chr1.1:62672416-62672435 | MS.gene005346:CDS | 20.0% |
| !!! | TTAAGGATTATATTTTTCAC+AGG | - | chr1.1:62672264-62672283 | MS.gene005346:intron | 20.0% |
| !!! | TTAATTCTTCAATTTTGTCT+AGG | - | chr1.1:62672964-62672983 | MS.gene005346:CDS | 20.0% |
| !!! | TTTTTCTTCATTAAGGAATA+AGG | + | chr1.1:62673624-62673643 | None:intergenic | 20.0% |
| ! | AAAAGCAAAATCAGAATTTC+TGG | - | chr1.1:62674884-62674903 | MS.gene005346:CDS | 25.0% |
| ! | AAAGCAAAATCAGAATTTCT+GGG | - | chr1.1:62674885-62674904 | MS.gene005346:CDS | 25.0% |
| ! | AAATGCAAAGATTATGGAAA+TGG | - | chr1.1:62672297-62672316 | MS.gene005346:intron | 25.0% |
| ! | AAATTGAAGAATTAACATCC+TGG | + | chr1.1:62672959-62672978 | None:intergenic | 25.0% |
| ! | AAGATTATGGAAATGGAAAT+TGG | - | chr1.1:62672304-62672323 | MS.gene005346:intron | 25.0% |
| ! | AATCCATCAATGAACTTAAA+TGG | + | chr1.1:62674359-62674378 | None:intergenic | 25.0% |
| ! | AGTAACAAGATCCTAAAAAA+TGG | + | chr1.1:62672631-62672650 | None:intergenic | 25.0% |
| ! | ATTCATCTTCTCTATATTCT+TGG | + | chr1.1:62674150-62674169 | None:intergenic | 25.0% |
| ! | ATTCTTTGTAACTAAAGTCT+TGG | - | chr1.1:62673750-62673769 | MS.gene005346:intron | 25.0% |
| ! | CTAGAGTACAATCTATTTAA+AGG | + | chr1.1:62673554-62673573 | None:intergenic | 25.0% |
| ! | GTAACAAGATCCTAAAAAAT+GGG | + | chr1.1:62672630-62672649 | None:intergenic | 25.0% |
| ! | TAAAGAAACTATAACTAGAC+AGG | - | chr1.1:62672033-62672052 | MS.gene005346:CDS | 25.0% |
| ! | TAAGGTACAGTATATGTAAT+TGG | + | chr1.1:62672401-62672420 | None:intergenic | 25.0% |
| ! | TAAGTTCTTTACATTAGTAG+CGG | - | chr1.1:62672845-62672864 | MS.gene005346:CDS | 25.0% |
| ! | TAATTTACAGAAGGATCTTA+AGG | - | chr1.1:62673995-62674014 | MS.gene005346:intron | 25.0% |
| ! | TATATGAACGAGTAATAACA+CGG | + | chr1.1:62674297-62674316 | None:intergenic | 25.0% |
| ! | TCATTCAAATCCTTTAACAA+AGG | + | chr1.1:62671920-62671939 | None:intergenic | 25.0% |
| ! | TGATGAAATAGTTAGACTTA+AGG | - | chr1.1:62674190-62674209 | MS.gene005346:intron | 25.0% |
| ! | TTCATCTTCTCTATATTCTT+GGG | + | chr1.1:62674149-62674168 | None:intergenic | 25.0% |
| !! | AATCCATTTAAGTTCATTGA+TGG | - | chr1.1:62674353-62674372 | MS.gene005346:intron | 25.0% |
| !! | GAATTATTTGACCATTGTTT+TGG | - | chr1.1:62674602-62674621 | MS.gene005346:intron | 25.0% |
| !! | TGTCATCTTTTTCTTCATTA+AGG | + | chr1.1:62673631-62673650 | None:intergenic | 25.0% |
| !! | TGTGATTATTCTGAAAAATG+TGG | + | chr1.1:62672990-62673009 | None:intergenic | 25.0% |
| !!! | AATATTGATTCAGCACATAA+AGG | - | chr1.1:62673797-62673816 | MS.gene005346:intron | 25.0% |
| !!! | AGCTTTCTTTTCTTTATTTG+AGG | - | chr1.1:62674322-62674341 | MS.gene005346:intron | 25.0% |
| !!! | ATAATTTTTCTAGCCAGTAA+TGG | - | chr1.1:62673389-62673408 | MS.gene005346:intron | 25.0% |
| !!! | ATATAATGCAGTTTTGGTAA+TGG | + | chr1.1:62673665-62673684 | None:intergenic | 25.0% |
| !!! | CTATTAGTCTTGATTTTCTT+TGG | + | chr1.1:62672788-62672807 | None:intergenic | 25.0% |
| !!! | TTTTTTAGTCCTGCAATTTA+AGG | - | chr1.1:62672247-62672266 | MS.gene005346:intron | 25.0% |
| AACAAAAAGTTTAGGTGAGA+TGG | - | chr1.1:62672749-62672768 | MS.gene005346:CDS | 30.0% | |
| AAGAAACACTTGGACAAATA+AGG | - | chr1.1:62674647-62674666 | MS.gene005346:intron | 30.0% | |
| AATTAACATCCTGGTTAGAA+AGG | + | chr1.1:62672950-62672969 | None:intergenic | 30.0% | |
| AGAATCGTGCAAAAAAAAAG+TGG | + | chr1.1:62672497-62672516 | None:intergenic | 30.0% | |
| AGAGACAAATGCAAAGATTA+TGG | - | chr1.1:62672291-62672310 | MS.gene005346:intron | 30.0% | |
| AGGAAATGCTTAAATGTTTG+TGG | - | chr1.1:62674533-62674552 | MS.gene005346:CDS | 30.0% | |
| AGTACAATAAGTGACTTCAA+TGG | + | chr1.1:62673322-62673341 | None:intergenic | 30.0% | |
| ATATGAACGAGTAATAACAC+GGG | + | chr1.1:62674296-62674315 | None:intergenic | 30.0% | |
| ATCACGTGAGTATATTCAAT+AGG | - | chr1.1:62673358-62673377 | MS.gene005346:intron | 30.0% | |
| ATTAACATCCTGGTTAGAAA+GGG | + | chr1.1:62672949-62672968 | None:intergenic | 30.0% | |
| CATGGTTTATGAATATCTCT+TGG | - | chr1.1:62672434-62672453 | MS.gene005346:CDS | 30.0% | |
| CTTCGAACTTCAAAAAGAAT+TGG | - | chr1.1:62673908-62673927 | MS.gene005346:intron | 30.0% | |
| GAACTTAAAGATCAATTAGC+AGG | - | chr1.1:62674835-62674854 | MS.gene005346:CDS | 30.0% | |
| GAATAACCTACTAGTTGTTA+AGG | - | chr1.1:62674166-62674185 | MS.gene005346:intron | 30.0% | |
| GCATTTAGATAAGAAACACT+TGG | - | chr1.1:62674637-62674656 | MS.gene005346:intron | 30.0% | |
| TAAATTCTTGCCCAAAACAA+TGG | + | chr1.1:62674616-62674635 | None:intergenic | 30.0% | |
| TAGAATTGAGCGTGATATTA+TGG | - | chr1.1:62674058-62674077 | MS.gene005346:intron | 30.0% | |
| TATAATGTAGGGAGAGAATT+GGG | - | chr1.1:62673049-62673068 | MS.gene005346:intron | 30.0% | |
| TATGTATCATAATGTTCCGT+TGG | + | chr1.1:62673708-62673727 | None:intergenic | 30.0% | |
| TCACGTGAGTATATTCAATA+GGG | - | chr1.1:62673359-62673378 | MS.gene005346:intron | 30.0% | |
| TCACTTATTGTACTGCAATA+TGG | - | chr1.1:62673328-62673347 | MS.gene005346:intron | 30.0% | |
| TCATTACTTCATCGATAACT+TGG | + | chr1.1:62673504-62673523 | None:intergenic | 30.0% | |
| TGGTAAATTGCAGAAGAAAT+TGG | - | chr1.1:62672324-62672343 | MS.gene005346:intron | 30.0% | |
| TTATAATGTAGGGAGAGAAT+TGG | - | chr1.1:62673048-62673067 | MS.gene005346:intron | 30.0% | |
| TTATTGTACTGCAATATGGA+AGG | - | chr1.1:62673332-62673351 | MS.gene005346:intron | 30.0% | |
| TTCAGTTGATCCTTTGTTAA+AGG | - | chr1.1:62671907-62671926 | MS.gene005346:CDS | 30.0% | |
| TTGTGAACTGCGAAAATTAT+TGG | - | chr1.1:62674112-62674131 | MS.gene005346:intron | 30.0% | |
| ! | GTCAGAATATAATGCAGTTT+TGG | + | chr1.1:62673671-62673690 | None:intergenic | 30.0% |
| ! | TATGAGTGATTTTCCAACTT+AGG | + | chr1.1:62673085-62673104 | None:intergenic | 30.0% |
| ! | TCGATGAAGTAATGAACTTT+TGG | - | chr1.1:62673509-62673528 | MS.gene005346:intron | 30.0% |
| ! | TGATTTCACTAAGTTGACTA+AGG | + | chr1.1:62674756-62674775 | None:intergenic | 30.0% |
| ! | TTTTCATTGATGTGCATGAT+TGG | - | chr1.1:62674684-62674703 | MS.gene005346:intron | 30.0% |
| !! | GAACTTAAATGGATTAGCTA+TGG | + | chr1.1:62674348-62674367 | None:intergenic | 30.0% |
| !! | TTCATTTTAGCATATCCCAT+TGG | - | chr1.1:62672666-62672685 | MS.gene005346:CDS | 30.0% |
| !!! | CTGTTATAGATCTGCTTTTT+GGG | - | chr1.1:62674571-62674590 | MS.gene005346:intron | 30.0% |
| AAACACAGTTGGAGAAACAA+CGG | - | chr1.1:62674382-62674401 | MS.gene005346:intron | 35.0% | |
| AATTCAGTTCATACCCTACA+AGG | + | chr1.1:62672886-62672905 | None:intergenic | 35.0% | |
| AATTGAGCGTGATATTATGG+AGG | - | chr1.1:62674061-62674080 | MS.gene005346:intron | 35.0% | |
| ACTGCGAAAATTATTGGATG+AGG | - | chr1.1:62674118-62674137 | MS.gene005346:intron | 35.0% | |
| AGAAAAAAATGAGCAGCTTC+AGG | - | chr1.1:62672348-62672367 | MS.gene005346:intron | 35.0% | |
| AGGAAAGCAACAAACAGTTT+CGG | - | chr1.1:62674855-62674874 | MS.gene005346:CDS | 35.0% | |
| ATAAGTGACTTCAATGGTGA+AGG | + | chr1.1:62673316-62673335 | None:intergenic | 35.0% | |
| ATTCAGTTCATACCCTACAA+GGG | + | chr1.1:62672885-62672904 | None:intergenic | 35.0% | |
| CATCATCCTTAACAACTAGT+AGG | + | chr1.1:62674175-62674194 | None:intergenic | 35.0% | |
| GAATTCTTATCGACCTTTGT+TGG | - | chr1.1:62672901-62672920 | MS.gene005346:CDS | 35.0% | |
| GACTAAGGAATTAGAATCAC+AGG | - | chr1.1:62674250-62674269 | MS.gene005346:intron | 35.0% | |
| GAGTATATTCAATAGGGACT+GGG | - | chr1.1:62673365-62673384 | MS.gene005346:intron | 35.0% | |
| GGGATATGCTAAAATGAAAG+AGG | + | chr1.1:62672664-62672683 | None:intergenic | 35.0% | |
| GGGTCATTTGAATGTACTAT+TGG | + | chr1.1:62673168-62673187 | None:intergenic | 35.0% | |
| GTTTGTGGTTACAGTGAATT+GGG | - | chr1.1:62674548-62674567 | MS.gene005346:CDS | 35.0% | |
| TGAGTATATTCAATAGGGAC+TGG | - | chr1.1:62673364-62673383 | MS.gene005346:intron | 35.0% | |
| TGTTTGTGGTTACAGTGAAT+TGG | - | chr1.1:62674547-62674566 | MS.gene005346:CDS | 35.0% | |
| TTAAGATCATGTCTGCTCAT+TGG | - | chr1.1:62674219-62674238 | MS.gene005346:intron | 35.0% | |
| ! | ACTAGTTCTCTATTGACCAA+CGG | - | chr1.1:62673689-62673708 | MS.gene005346:intron | 35.0% |
| ! | AGTGATTTTCCAACTTAGGA+TGG | + | chr1.1:62673081-62673100 | None:intergenic | 35.0% |
| ! | ATCAACTGAAGCTTGTTTGT+CGG | + | chr1.1:62671897-62671916 | None:intergenic | 35.0% |
| ! | ATTTTCTTTGGCCCAAGTAA+AGG | + | chr1.1:62672776-62672795 | None:intergenic | 35.0% |
| ! | CATCACAATTTTGAATCCAG+AGG | + | chr1.1:62674914-62674933 | None:intergenic | 35.0% |
| ! | GATGGATTTCAAAACACAGT+TGG | - | chr1.1:62674371-62674390 | MS.gene005346:intron | 35.0% |
| ! | GCAGCTTGATAATTTACAGA+AGG | - | chr1.1:62673986-62674005 | MS.gene005346:intron | 35.0% |
| ! | GTAAGAGAGTTTTCCAACAA+AGG | + | chr1.1:62672917-62672936 | None:intergenic | 35.0% |
| !! | GCTGTTATAGATCTGCTTTT+TGG | - | chr1.1:62674570-62674589 | MS.gene005346:intron | 35.0% |
| !! | GTTTGCTTTTCTAGCAGAAA+TGG | - | chr1.1:62672534-62672553 | MS.gene005346:intron | 35.0% |
| !! | TCTTGGTGGTATTTTCAAAG+CGG | - | chr1.1:62674950-62674969 | MS.gene005346:CDS | 35.0% |
| !!! | ACACTAGATGCCCATTTTTT+AGG | - | chr1.1:62672617-62672636 | MS.gene005346:CDS | 35.0% |
| !!! | CTTTTTGAAGTTCGAAGCAT+TGG | + | chr1.1:62673905-62673924 | None:intergenic | 35.0% |
| !!! | GCACTCATTTTGTGTCATTT+AGG | - | chr1.1:62674513-62674532 | MS.gene005346:CDS | 35.0% |
| !!! | TTCTACTTTTGGAGTCTTTG+TGG | - | chr1.1:62672194-62672213 | MS.gene005346:intron | 35.0% |
| AAACTACCAATGCTCTAGCA+CGG | + | chr1.1:62673195-62673214 | None:intergenic | 40.0% | |
| AAATACCACCAAGACTAGCA+TGG | + | chr1.1:62674944-62674963 | None:intergenic | 40.0% | |
| AAGAATTCTGGCAGCATCTA+TGG | + | chr1.1:62673282-62673301 | None:intergenic | 40.0% | |
| ACAGAAGGATCTTAAGGCAA+GGG | - | chr1.1:62674001-62674020 | MS.gene005346:intron | 40.0% | |
| AGTCTTTGTGGTTGTTTGTG+GGG | - | chr1.1:62672206-62672225 | MS.gene005346:intron | 40.0% | |
| GACTAAGGATGTTCAGATGA+TGG | + | chr1.1:62674741-62674760 | None:intergenic | 40.0% | |
| GAGTCTTTGTGGTTGTTTGT+GGG | - | chr1.1:62672205-62672224 | MS.gene005346:intron | 40.0% | |
| GATAAGATCCTCTCCATTAC+TGG | + | chr1.1:62673405-62673424 | None:intergenic | 40.0% | |
| GATTCAGCACATAAAGGAGT+TGG | - | chr1.1:62673803-62673822 | MS.gene005346:intron | 40.0% | |
| TAATAACACGGGCAAAGATC+AGG | + | chr1.1:62674285-62674304 | None:intergenic | 40.0% | |
| TACAGAAGGATCTTAAGGCA+AGG | - | chr1.1:62674000-62674019 | MS.gene005346:intron | 40.0% | |
| TCATTGGAAGCTCAAGACTA+AGG | - | chr1.1:62674235-62674254 | MS.gene005346:intron | 40.0% | |
| TGCAAATATGGGCACAACAT+AGG | + | chr1.1:62673243-62673262 | None:intergenic | 40.0% | |
| TTCAAACTCTTCTGCTGAGA+AGG | - | chr1.1:62672372-62672391 | MS.gene005346:CDS | 40.0% | |
| ! | GTCTTTAGCTTCTGAGTTGA+AGG | - | chr1.1:62671970-62671989 | MS.gene005346:CDS | 40.0% |
| ! | TAGTTCTCTAAGAGAGCATG+AGG | - | chr1.1:62673941-62673960 | MS.gene005346:intron | 40.0% |
| !! | GAAGAAGAGAGTGTTGAAGT+TGG | - | chr1.1:62674422-62674441 | MS.gene005346:intron | 40.0% |
| !! | GTATGTGTTTTCGAGCAGAT+GGG | - | chr1.1:62674787-62674806 | MS.gene005346:intron | 40.0% |
| !! | TAGCATATCCCATTGGTCTT+TGG | - | chr1.1:62672673-62672692 | MS.gene005346:CDS | 40.0% |
| !! | TGTATGTGTTTTCGAGCAGA+TGG | - | chr1.1:62674786-62674805 | MS.gene005346:intron | 40.0% |
| !! | TTTTCTAGCCAGTAATGGAG+AGG | - | chr1.1:62673394-62673413 | MS.gene005346:intron | 40.0% |
| AACTACCAATGCTCTAGCAC+GGG | + | chr1.1:62673194-62673213 | None:intergenic | 45.0% | |
| ACCTTCTCACCAAAGACCAA+TGG | + | chr1.1:62672685-62672704 | None:intergenic | 45.0% | |
| AGGTGAGATGGACCTTTACT+TGG | - | chr1.1:62672761-62672780 | MS.gene005346:CDS | 45.0% | |
| ATGGAGGCTCTTGCAAAATC+CGG | - | chr1.1:62674077-62674096 | MS.gene005346:intron | 45.0% | |
| ATTTGATCTCACGCCCTTGT+AGG | - | chr1.1:62672869-62672888 | MS.gene005346:CDS | 45.0% | |
| CCTTCTCACCAAAGACCAAT+GGG | + | chr1.1:62672684-62672703 | None:intergenic | 45.0% | |
| GAAGTTGGAATTCTGTCTGC+AGG | - | chr1.1:62674437-62674456 | MS.gene005346:intron | 45.0% | |
| GCTCGTAATAGCTAGAGCAA+CGG | - | chr1.1:62673842-62673861 | MS.gene005346:intron | 45.0% | |
| GGAGTCTTTGTGGTTGTTTG+TGG | - | chr1.1:62672204-62672223 | MS.gene005346:intron | 45.0% | |
| GGTGAGATGGACCTTTACTT+GGG | - | chr1.1:62672762-62672781 | MS.gene005346:CDS | 45.0% | |
| TCAGACGCGCAAACTTCAAA+GGG | - | chr1.1:62674470-62674489 | MS.gene005346:CDS | 45.0% | |
| TCTATGGCAATTGGGTAGCA+CGG | + | chr1.1:62673266-62673285 | None:intergenic | 45.0% | |
| TGGCAGCATCTATGGCAATT+GGG | + | chr1.1:62673274-62673293 | None:intergenic | 45.0% | |
| TGTAGGGAGAGAATTGGGAT+TGG | - | chr1.1:62673054-62673073 | MS.gene005346:intron | 45.0% | |
| TTCACAATCCTTGTTCTCCC+CGG | + | chr1.1:62674099-62674118 | None:intergenic | 45.0% | |
| TTTGATCTCACGCCCTTGTA+GGG | - | chr1.1:62672870-62672889 | MS.gene005346:CDS | 45.0% | |
| ! | CTTCTGAGTTGAAGGAGCTT+AGG | - | chr1.1:62671978-62671997 | MS.gene005346:CDS | 45.0% |
| ! | CTTGTTGTCCCTTTCTAACC+AGG | - | chr1.1:62672938-62672957 | MS.gene005346:CDS | 45.0% |
| ! | GTCTATGTCCATGCTAGTCT+TGG | - | chr1.1:62674933-62674952 | MS.gene005346:CDS | 45.0% |
| !! | TATGTCCATGCTAGTCTTGG+TGG | - | chr1.1:62674936-62674955 | MS.gene005346:CDS | 45.0% |
| !! | AATAAAATTAATTATAATGT+AGG | - | chr1.1:62673037-62673056 | MS.gene005346:intron | 5.0% |
| !! | ATAAAATTAATTATAATGTA+GGG | - | chr1.1:62673038-62673057 | MS.gene005346:intron | 5.0% |
| !! | TTATTATTATAAAAGAAAAA+AGG | + | chr1.1:62672731-62672750 | None:intergenic | 5.0% |
| !!! | TTAATTTTATTTATTTGATT+TGG | + | chr1.1:62673028-62673047 | None:intergenic | 5.0% |
| ACTACCAATGCTCTAGCACG+GGG | + | chr1.1:62673193-62673212 | None:intergenic | 50.0% | |
| CTCAGACGCGCAAACTTCAA+AGG | - | chr1.1:62674469-62674488 | MS.gene005346:CDS | 50.0% | |
| CTGGCAGCATCTATGGCAAT+TGG | + | chr1.1:62673275-62673294 | None:intergenic | 50.0% | |
| GAAGGAGCTTAGGAGTCGTT+TGG | - | chr1.1:62671988-62672007 | MS.gene005346:CDS | 50.0% | |
| GAGGAACGCGTACTTAGACT+AGG | - | chr1.1:62673960-62673979 | MS.gene005346:intron | 50.0% | |
| GGGTAGCACGGTGCAAATAT+GGG | + | chr1.1:62673254-62673273 | None:intergenic | 50.0% | |
| TGCAAAATCCGGGGAGAACA+AGG | - | chr1.1:62674088-62674107 | MS.gene005346:intron | 50.0% | |
| TGGAGGCTCTTGCAAAATCC+GGG | - | chr1.1:62674078-62674097 | MS.gene005346:intron | 50.0% | |
| TGGGTAGCACGGTGCAAATA+TGG | + | chr1.1:62673255-62673274 | None:intergenic | 50.0% | |
| TGTGGTTGTTTGTGGGGTCA+AGG | - | chr1.1:62672212-62672231 | MS.gene005346:intron | 50.0% | |
| ! | TAGGAGTCGTTTGGCTTCAC+AGG | - | chr1.1:62671997-62672016 | MS.gene005346:CDS | 50.0% |
| !! | CAGAATTTCTGGGACACCTC+TGG | - | chr1.1:62674895-62674914 | MS.gene005346:CDS | 50.0% |
| !! | CCCATTGGTCTTTGGTGAGA+AGG | - | chr1.1:62672681-62672700 | MS.gene005346:CDS | 50.0% |
| !! | GGGATTGGTCCATCCTAAGT+TGG | - | chr1.1:62673069-62673088 | MS.gene005346:intron | 50.0% |
| CAATGCTCTAGCACGGGGAA+GGG | + | chr1.1:62673188-62673207 | None:intergenic | 55.0% | |
| GGAGGCTCTTGCAAAATCCG+GGG | - | chr1.1:62674079-62674098 | MS.gene005346:intron | 55.0% | |
| ! | GAAACAACGGCGTGCTGATC+AGG | - | chr1.1:62674395-62674414 | MS.gene005346:intron | 55.0% |
| !! | CTGCGCTGATTGAGCTGATG+CGG | + | chr1.1:62673880-62673899 | None:intergenic | 55.0% |
| CCAATGCTCTAGCACGGGGA+AGG | + | chr1.1:62673189-62673208 | None:intergenic | 60.0% | |
| CCTTCCCCGTGCTAGAGCAT+TGG | - | chr1.1:62673186-62673205 | MS.gene005346:intron | 60.0% | |
| TCGAGCAGATGGGAGAGCGA+CGG | - | chr1.1:62674797-62674816 | MS.gene005346:intron | 60.0% | |
| CGAGCAGATGGGAGAGCGAC+GGG | - | chr1.1:62674798-62674817 | MS.gene005346:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 62671884 | 62674975 | 62671884 | ID=MS.gene005346 |
| chr1.1 | mRNA | 62671884 | 62674975 | 62671884 | ID=MS.gene005346.t1;Parent=MS.gene005346 |
| chr1.1 | exon | 62674805 | 62674975 | 62674805 | ID=MS.gene005346.t1.exon1;Parent=MS.gene005346.t1 |
| chr1.1 | CDS | 62674805 | 62674975 | 62674805 | ID=cds.MS.gene005346.t1;Parent=MS.gene005346.t1 |
| chr1.1 | exon | 62674466 | 62674573 | 62674466 | ID=MS.gene005346.t1.exon2;Parent=MS.gene005346.t1 |
| chr1.1 | CDS | 62674466 | 62674573 | 62674466 | ID=cds.MS.gene005346.t1;Parent=MS.gene005346.t1 |
| chr1.1 | exon | 62672588 | 62673049 | 62672588 | ID=MS.gene005346.t1.exon3;Parent=MS.gene005346.t1 |
| chr1.1 | CDS | 62672588 | 62673049 | 62672588 | ID=cds.MS.gene005346.t1;Parent=MS.gene005346.t1 |
| chr1.1 | exon | 62672368 | 62672469 | 62672368 | ID=MS.gene005346.t1.exon4;Parent=MS.gene005346.t1 |
| chr1.1 | CDS | 62672368 | 62672469 | 62672368 | ID=cds.MS.gene005346.t1;Parent=MS.gene005346.t1 |
| chr1.1 | exon | 62671884 | 62672054 | 62671884 | ID=MS.gene005346.t1.exon5;Parent=MS.gene005346.t1 |
| chr1.1 | CDS | 62671884 | 62672054 | 62671884 | ID=cds.MS.gene005346.t1;Parent=MS.gene005346.t1 |
| Gene Sequence |
| Protein sequence |
