Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21056.t1 | XP_013469086.1 | 93.5 | 337 | 22 | 0 | 1 | 337 | 1 | 337 | 2.40E-87 | 332.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21056.t1 | F4K1B4 | 70.4 | 331 | 97 | 1 | 7 | 337 | 6 | 335 | 1.7e-60 | 234.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21056.t1 | A0A072VM81 | 93.5 | 337 | 22 | 0 | 1 | 337 | 1 | 337 | 1.7e-87 | 332.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene21056 | 0.830178 | 3.40E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene21056 | 0.812016 | 5.24E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene21056 | 0.83194 | 1.26E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene21056 | 0.842361 | 2.71E-58 | -1.69E-46 |
| MS.gene049499 | MS.gene21056 | 0.809651 | 1.70E-50 | -1.69E-46 |
| MS.gene049786 | MS.gene21056 | 0.806013 | 1.01E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene21056 | 0.857023 | 2.16E-62 | -1.69E-46 |
| MS.gene050414 | MS.gene21056 | 0.812082 | 5.07E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene21056 | 0.801159 | 1.03E-48 | -1.69E-46 |
| MS.gene050571 | MS.gene21056 | 0.806195 | 9.26E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene21056 | 0.808349 | 3.24E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene21056 | 0.875106 | 4.00E-68 | -1.69E-46 |
| MS.gene050759 | MS.gene21056 | 0.829137 | 6.09E-55 | -1.69E-46 |
| MS.gene050941 | MS.gene21056 | 0.823429 | 1.39E-53 | -1.69E-46 |
| MS.gene050962 | MS.gene21056 | 0.817984 | 2.48E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene21056 | 0.821176 | 4.64E-53 | -1.69E-46 |
| MS.gene051490 | MS.gene21056 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene051852 | MS.gene21056 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene051856 | MS.gene21056 | 0.818628 | 1.78E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene21056 | 0.812139 | 4.93E-51 | -1.69E-46 |
| MS.gene052052 | MS.gene21056 | 0.80839 | 3.17E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene21056 | 0.819472 | 1.14E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene21056 | 0.830274 | 3.22E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene21056 | 0.85002 | 2.22E-60 | -1.69E-46 |
| MS.gene052493 | MS.gene21056 | 0.804406 | 2.19E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene21056 | 0.810136 | 1.34E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene21056 | 0.853978 | 1.67E-61 | -1.69E-46 |
| MS.gene053226 | MS.gene21056 | 0.804799 | 1.82E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene21056 | 0.80291 | 4.48E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene21056 | 0.804606 | 1.99E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene21056 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene21056 | 0.818234 | 2.18E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene21056 | 0.830376 | 3.04E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene21056 | 0.808975 | 2.38E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene21056 | 0.810741 | 9.91E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene21056 | 0.83129 | 1.82E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene21056 | 0.801189 | 1.01E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene21056 | 0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene21056 | 0.804205 | 2.42E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene21056 | 0.873196 | 1.77E-67 | -1.69E-46 |
| MS.gene05552 | MS.gene21056 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene21056 | 0.846145 | 2.61E-59 | -1.69E-46 |
| MS.gene056045 | MS.gene21056 | 0.823978 | 1.03E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene21056 | 0.868004 | 9.01E-66 | -1.69E-46 |
| MS.gene056308 | MS.gene21056 | 0.804682 | 1.92E-49 | -1.69E-46 |
| MS.gene056509 | MS.gene21056 | 0.807575 | 4.73E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene21056 | 0.809195 | 2.13E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene21056 | 0.802076 | 6.66E-49 | -1.69E-46 |
| MS.gene056831 | MS.gene21056 | 0.833102 | 6.47E-56 | -1.69E-46 |
| MS.gene057034 | MS.gene21056 | 0.808543 | 2.94E-50 | -1.69E-46 |
| MS.gene057155 | MS.gene21056 | 0.801263 | 9.78E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene21056 | -0.815448 | 9.20E-52 | -1.69E-46 |
| MS.gene057919 | MS.gene21056 | 0.805687 | 1.18E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene21056 | 0.82162 | 3.67E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene21056 | 0.814421 | 1.55E-51 | -1.69E-46 |
| MS.gene058429 | MS.gene21056 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene21056 | 0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene21056 | 0.825664 | 4.14E-54 | -1.69E-46 |
| MS.gene059283 | MS.gene21056 | 0.8232 | 1.57E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene21056 | 0.81517 | 1.06E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene21056 | 0.820165 | 7.92E-53 | -1.69E-46 |
| MS.gene060435 | MS.gene21056 | 0.849434 | 3.24E-60 | -1.69E-46 |
| MS.gene06052 | MS.gene21056 | 0.838608 | 2.60E-57 | -1.69E-46 |
| MS.gene060802 | MS.gene21056 | 0.808894 | 2.48E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene21056 | 0.804272 | 2.34E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene21056 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene060870 | MS.gene21056 | 0.807772 | 4.29E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene21056 | 0.837765 | 4.29E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene21056 | 0.813064 | 3.09E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene21056 | 0.819017 | 1.45E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene21056 | 0.828321 | 9.60E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene21056 | 0.844191 | 8.81E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21056 | MS.gene005346 | PPI |
| MS.gene21056 | MS.gene023667 | PPI |
| MS.gene21056 | MS.gene74542 | PPI |
| MS.gene27907 | MS.gene21056 | PPI |
| MS.gene21056 | MS.gene03069 | PPI |
| MS.gene21056 | MS.gene40748 | PPI |
| MS.gene21056 | MS.gene20985 | PPI |
| MS.gene21056 | MS.gene47863 | PPI |
| MS.gene21056 | MS.gene003302 | PPI |
| MS.gene21056 | MS.gene058821 | PPI |
| MS.gene21056 | MS.gene058831 | PPI |
| MS.gene21056 | MS.gene02100 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21056.t1 | MTR_1g484830 | 97.626 | 337 | 8 | 0 | 1 | 337 | 1 | 337 | 0.0 | 652 |
| MS.gene21056.t1 | MTR_7g012670 | 75.000 | 56 | 12 | 1 | 136 | 191 | 2 | 55 | 8.39e-18 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21056.t1 | AT5G26770 | 70.270 | 333 | 94 | 2 | 7 | 337 | 6 | 335 | 2.54e-164 | 462 |
| MS.gene21056.t1 | AT5G26770 | 70.270 | 333 | 94 | 2 | 7 | 337 | 6 | 335 | 2.54e-164 | 462 |
| MS.gene21056.t1 | AT5G26770 | 65.730 | 356 | 94 | 3 | 7 | 337 | 6 | 358 | 6.96e-159 | 449 |
| MS.gene21056.t1 | AT5G26770 | 65.730 | 356 | 94 | 3 | 7 | 337 | 6 | 358 | 6.96e-159 | 449 |
| MS.gene21056.t1 | AT5G26770 | 64.264 | 333 | 94 | 3 | 7 | 337 | 6 | 315 | 1.46e-144 | 411 |
| MS.gene21056.t1 | AT1G09470 | 61.468 | 327 | 125 | 1 | 11 | 337 | 11 | 336 | 1.88e-136 | 391 |
| MS.gene21056.t1 | AT5G26770 | 69.643 | 280 | 85 | 0 | 7 | 286 | 6 | 285 | 1.12e-134 | 385 |
| MS.gene21056.t1 | AT3G05830 | 63.018 | 338 | 122 | 3 | 1 | 337 | 1 | 336 | 1.51e-132 | 381 |
| MS.gene21056.t1 | AT3G05830 | 63.018 | 338 | 122 | 3 | 1 | 337 | 1 | 336 | 1.51e-132 | 381 |
| MS.gene21056.t1 | AT1G09470 | 60.245 | 327 | 128 | 2 | 11 | 337 | 11 | 335 | 8.95e-130 | 374 |
| MS.gene21056.t1 | AT1G09470 | 60.245 | 327 | 128 | 2 | 11 | 337 | 11 | 335 | 8.95e-130 | 374 |
| MS.gene21056.t1 | AT3G05830 | 60.684 | 351 | 122 | 4 | 1 | 337 | 1 | 349 | 5.59e-129 | 372 |
| MS.gene21056.t1 | AT1G09483 | 67.925 | 106 | 32 | 2 | 233 | 337 | 1 | 105 | 2.30e-42 | 142 |
Find 56 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTTGATCCTTTGTTAA+AGG | 0.155858 | 1.4:+68571670 | MS.gene21056:CDS |
| AAAAGCAAAATCAGAATTTC+TGG | 0.195429 | 1.4:+68574619 | MS.gene21056:CDS |
| TGGTAAATTGCAAAAGAAAT+TGG | 0.246412 | 1.4:+68572064 | MS.gene21056:CDS |
| TAGAATTGAGCGTGATATTA+TGG | 0.255210 | 1.4:+68573796 | MS.gene21056:CDS |
| TTCATCTTCTCTATATTCTT+AGG | 0.270281 | 1.4:-68573884 | None:intergenic |
| TTGTGAACTGCGAAAATTAT+TGG | 0.291074 | 1.4:+68573850 | MS.gene21056:CDS |
| GTCTTTAGCTTCTGAGTTGA+AGG | 0.308444 | 1.4:+68571733 | MS.gene21056:CDS |
| AAGATTATGGAAATGGAAAT+TGG | 0.308528 | 1.4:+68572044 | MS.gene21056:CDS |
| AGAGACAAATGCAAAGATTA+TGG | 0.320596 | 1.4:+68572031 | MS.gene21056:CDS |
| AAATGCAAAGATTATGGAAA+TGG | 0.386311 | 1.4:+68572037 | MS.gene21056:CDS |
| CAGAATTTCTGGGACACCTC+TGG | 0.394928 | 1.4:+68574630 | MS.gene21056:CDS |
| AATATTGATTCAGCACATAA+AGG | 0.405506 | 1.4:+68573535 | MS.gene21056:intron |
| TAATTTACAGAAGGATCTTA+AGG | 0.405711 | 1.4:+68573733 | MS.gene21056:CDS |
| ATGGAGGCTCTCGCAAAATC+CGG | 0.409252 | 1.4:+68573815 | MS.gene21056:CDS |
| GAAACAACGACGTGCTGATC+AGG | 0.420227 | 1.4:+68574133 | MS.gene21056:CDS |
| GAAGGAGCTTCGAAGTCGTT+TGG | 0.422346 | 1.4:+68571751 | MS.gene21056:CDS |
| GAATAAGCTACTGGTTGTTA+AGG | 0.427044 | 1.4:+68573904 | MS.gene21056:CDS |
| GAAGAAGAGAGTGTTGAAGT+TGG | 0.430394 | 1.4:+68574160 | MS.gene21056:CDS |
| TCGAAGTCGTTTGGCTTCGC+AGG | 0.437680 | 1.4:+68571760 | MS.gene21056:CDS |
| TTAAGATCATGTCTGCTCAT+TGG | 0.439395 | 1.4:+68573957 | MS.gene21056:CDS |
| CGCAAAATCCGGGGAGAACA+AGG | 0.444877 | 1.4:+68573826 | MS.gene21056:CDS |
| ATCAACTGAAGCTTGTTTGT+CGG | 0.455999 | 1.4:-68571657 | None:intergenic |
| AGTTAGAGTTTCTTTAACAT+AGG | 0.456089 | 1.4:-68571789 | None:intergenic |
| CTCAGACGCGCAAACTTCAA+AGG | 0.472445 | 1.4:+68574207 | MS.gene21056:CDS |
| GTCTATGTCCATGCTAGTCT+TGG | 0.474536 | 1.4:+68574668 | MS.gene21056:CDS |
| TGATGAAATAGTTAGACTTA+AGG | 0.477477 | 1.4:+68573928 | MS.gene21056:CDS |
| GACTAAGGAATTAGAATCAC+AGG | 0.477639 | 1.4:+68573988 | MS.gene21056:CDS |
| TTCAAACTCTTCTGCTGAGA+AGG | 0.479809 | 1.4:+68572112 | MS.gene21056:CDS |
| TGGAGGCTCTCGCAAAATCC+GGG | 0.485779 | 1.4:+68573816 | MS.gene21056:CDS |
| CGAGCAGATGGGAGAGCGAC+GGG | 0.486908 | 1.4:+68574533 | MS.gene21056:intron |
| TTCACAATCCTTGTTCTCCC+CGG | 0.489475 | 1.4:-68573834 | None:intergenic |
| GAACTTAAAGATCAATTAGC+AGG | 0.491351 | 1.4:+68574570 | MS.gene21056:CDS |
| AGGAAAGCAACAAACAGTTT+CGG | 0.509158 | 1.4:+68574590 | MS.gene21056:CDS |
| GATTCAGCACATAAAGGAGT+TGG | 0.509544 | 1.4:+68573541 | MS.gene21056:intron |
| TCATTCAAATCCTTTAACAA+AGG | 0.512856 | 1.4:-68571680 | None:intergenic |
| TATGTCCATGCTAGTCTTGG+TGG | 0.514229 | 1.4:+68574671 | MS.gene21056:CDS |
| ACTGCGAAAATTATTGGATG+AGG | 0.521280 | 1.4:+68573856 | MS.gene21056:CDS |
| TCATTGGAAGCTCAAGACTA+AGG | 0.525004 | 1.4:+68573973 | MS.gene21056:CDS |
| TAAAGAAACTCTAACTAGAC+AGG | 0.538869 | 1.4:+68571796 | MS.gene21056:CDS |
| AGAGAAGATGAATAAGCTAC+TGG | 0.539996 | 1.4:+68573895 | MS.gene21056:CDS |
| AAAGCAAAATCAGAATTTCT+GGG | 0.542452 | 1.4:+68574620 | MS.gene21056:CDS |
| ACAGAAGGATCTTAAGGCAA+GGG | 0.550488 | 1.4:+68573739 | MS.gene21056:CDS |
| TACAGAAGGATCTTAAGGCA+AGG | 0.554800 | 1.4:+68573738 | MS.gene21056:CDS |
| CTGCGCTGATTGAGCTGATG+CGG | 0.556870 | 1.4:-68573615 | None:intergenic |
| TCAGACGCGCAAACTTCAAA+GGG | 0.558261 | 1.4:+68574208 | MS.gene21056:CDS |
| TTGTTTGTCGGAAATTGACA+TGG | 0.561919 | 1.4:-68571645 | None:intergenic |
| GCAGCTTGATAATTTACAGA+AGG | 0.573568 | 1.4:+68573724 | MS.gene21056:CDS |
| GAAGTTGGAATTCTGTCTGC+AGG | 0.579748 | 1.4:+68574175 | MS.gene21056:CDS |
| TCGAGCAGATGGGAGAGCGA+CGG | 0.608995 | 1.4:+68574532 | MS.gene21056:intron |
| TAGTTCTCTAAGAGAGCATG+AGG | 0.613433 | 1.4:+68573679 | MS.gene21056:CDS |
| GAGGAACGCGTAATTAGACT+AGG | 0.621102 | 1.4:+68573698 | MS.gene21056:CDS |
| AAATACCACCAAGACTAGCA+TGG | 0.627363 | 1.4:-68574676 | None:intergenic |
| AATTGAGCGTGATATTATGG+AGG | 0.642028 | 1.4:+68573799 | MS.gene21056:CDS |
| TGTTTGTCGGAAATTGACAT+GGG | 0.647558 | 1.4:-68571644 | None:intergenic |
| GGAGGCTCTCGCAAAATCCG+GGG | 0.664732 | 1.4:+68573817 | MS.gene21056:CDS |
| GCTCGTAATAGCTAGAGCAA+CGG | 0.671851 | 1.4:+68573580 | MS.gene21056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAACAAAAAGTTT+AGG | + | chr1.4:68572486-68572505 | MS.gene21056:intron | 10.0% |
| !! | TATAAAAGAAAAAAGGTAAT+AGG | - | chr1.4:68572469-68572488 | None:intergenic | 15.0% |
| !!! | AAATTTTTGTATCAGTTTTA+CGG | + | chr1.4:68572843-68572862 | MS.gene21056:intron | 15.0% |
| !!! | AATTATTTGACCATTTTTTT+GGG | + | chr1.4:68574341-68574360 | MS.gene21056:intron | 15.0% |
| !!! | ACATATTTTACTTAACAATA+AGG | + | chr1.4:68572573-68572592 | MS.gene21056:intron | 15.0% |
| !!! | TTAATTCTTCAATTTTTTCT+AGG | + | chr1.4:68572709-68572728 | MS.gene21056:intron | 15.0% |
| !! | AATCCATCAATAAACTTAAA+TGG | - | chr1.4:68574097-68574116 | None:intergenic | 20.0% |
| !! | ACTTATAAGATATGATGTAT+AGG | - | chr1.4:68573211-68573230 | None:intergenic | 20.0% |
| !! | ATGATAAAAAACAAAGCTTT+CGG | + | chr1.4:68571699-68571718 | MS.gene21056:CDS | 20.0% |
| !! | GAACTTATAAATAAGAATTC+TGG | - | chr1.4:68573032-68573051 | None:intergenic | 20.0% |
| !! | TTTAAAGGTTAATGCATAAT+TGG | - | chr1.4:68573277-68573296 | None:intergenic | 20.0% |
| !!! | AAATTAATTTTAATGTAGGG+AGG | + | chr1.4:68572780-68572799 | MS.gene21056:intron | 20.0% |
| !!! | AAGTTACAATTTTTTTAGCA+TGG | - | chr1.4:68571900-68571919 | None:intergenic | 20.0% |
| !!! | AATCCATTTAAGTTTATTGA+TGG | + | chr1.4:68574091-68574110 | MS.gene21056:intron | 20.0% |
| !!! | GAATTATTTGACCATTTTTT+TGG | + | chr1.4:68574340-68574359 | MS.gene21056:intron | 20.0% |
| !!! | TTATACAAGTTTTCATTGAT+GGG | + | chr1.4:68574410-68574429 | MS.gene21056:intron | 20.0% |
| !!! | TTATGGATTATATTTTTCAC+AGG | + | chr1.4:68572004-68572023 | MS.gene21056:intron | 20.0% |
| !!! | TTTTTCTTCATTAAGGAATA+AGG | - | chr1.4:68573362-68573381 | None:intergenic | 20.0% |
| !!! | TTTTTTAGTACTGCAATTTA+TGG | + | chr1.4:68571987-68572006 | MS.gene21056:intron | 20.0% |
| ! | AAAAGCAAAATCAGAATTTC+TGG | + | chr1.4:68574619-68574638 | MS.gene21056:CDS | 25.0% |
| ! | AAAGCAAAATCAGAATTTCT+GGG | + | chr1.4:68574620-68574639 | MS.gene21056:CDS | 25.0% |
| ! | AAATGCAAAGATTATGGAAA+TGG | + | chr1.4:68572037-68572056 | MS.gene21056:CDS | 25.0% |
| ! | AACCACGAAAAGAAATAATA+AGG | - | chr1.4:68572158-68572177 | None:intergenic | 25.0% |
| ! | AAGATTATGGAAATGGAAAT+TGG | + | chr1.4:68572044-68572063 | MS.gene21056:CDS | 25.0% |
| ! | AATTAACATCCTAGTTAGAA+AGG | - | chr1.4:68572695-68572714 | None:intergenic | 25.0% |
| ! | AATTCAGTTCATATCTACAA+GGG | - | chr1.4:68572631-68572650 | None:intergenic | 25.0% |
| ! | AGTAACAAGATCCTAAAAAA+TGG | - | chr1.4:68572376-68572395 | None:intergenic | 25.0% |
| ! | AGTTAGAGTTTCTTTAACAT+AGG | - | chr1.4:68571792-68571811 | None:intergenic | 25.0% |
| ! | ATATGAACGAGTAATAACAA+GGG | - | chr1.4:68574034-68574053 | None:intergenic | 25.0% |
| ! | ATTAACATCCTAGTTAGAAA+GGG | - | chr1.4:68572694-68572713 | None:intergenic | 25.0% |
| ! | ATTACTCGTTCATATACTTA+GGG | + | chr1.4:68574039-68574058 | MS.gene21056:intron | 25.0% |
| ! | ATTCTTTGTAACTAAAGTCT+CGG | + | chr1.4:68573488-68573507 | MS.gene21056:intron | 25.0% |
| ! | CTAGAGTACAATCTATTTAA+AGG | - | chr1.4:68573292-68573311 | None:intergenic | 25.0% |
| ! | GATAAGAAACACTACAAATA+AGG | + | chr1.4:68574382-68574401 | MS.gene21056:intron | 25.0% |
| ! | GTAACAAGATCCTAAAAAAT+GGG | - | chr1.4:68572375-68572394 | None:intergenic | 25.0% |
| ! | TAAATTCTTGCCCAAAAAAA+TGG | - | chr1.4:68574354-68574373 | None:intergenic | 25.0% |
| ! | TAATTTACAGAAGGATCTTA+AGG | + | chr1.4:68573733-68573752 | MS.gene21056:CDS | 25.0% |
| ! | TATATGAACGAGTAATAACA+AGG | - | chr1.4:68574035-68574054 | None:intergenic | 25.0% |
| ! | TATTACTCGTTCATATACTT+AGG | + | chr1.4:68574038-68574057 | MS.gene21056:intron | 25.0% |
| ! | TCATTCAAATCCTTTAACAA+AGG | - | chr1.4:68571683-68571702 | None:intergenic | 25.0% |
| ! | TGATGAAATAGTTAGACTTA+AGG | + | chr1.4:68573928-68573947 | MS.gene21056:CDS | 25.0% |
| ! | TGGTAAATTGCAAAAGAAAT+TGG | + | chr1.4:68572064-68572083 | MS.gene21056:CDS | 25.0% |
| ! | TTCATCTTCTCTATATTCTT+AGG | - | chr1.4:68573887-68573906 | None:intergenic | 25.0% |
| !! | AGTATCAATCATTCTACTTT+TGG | + | chr1.4:68571927-68571946 | MS.gene21056:intron | 25.0% |
| !! | CTTATACAAGTTTTCATTGA+TGG | + | chr1.4:68574409-68574428 | MS.gene21056:intron | 25.0% |
| !! | TGTCATCTTTTTCTTCATTA+AGG | - | chr1.4:68573369-68573388 | None:intergenic | 25.0% |
| !!! | AAACTTAAATGGATTAGCTA+TGG | - | chr1.4:68574086-68574105 | None:intergenic | 25.0% |
| !!! | AATATTGATTCAGCACATAA+AGG | + | chr1.4:68573535-68573554 | MS.gene21056:intron | 25.0% |
| !!! | ATAATTTTTCTAGCCAGTAA+TGG | + | chr1.4:68573127-68573146 | MS.gene21056:intron | 25.0% |
| !!! | ATTAGTCTTAAGACTTTCTT+TGG | - | chr1.4:68572532-68572551 | None:intergenic | 25.0% |
| !!! | GAAATTCTGATTTTGCTTTT+CGG | - | chr1.4:68574619-68574638 | None:intergenic | 25.0% |
| !!! | TACCTTATTATTTCTTTTCG+TGG | + | chr1.4:68572153-68572172 | MS.gene21056:intron | 25.0% |
| !!! | TTGTTCTGTTTTTCTCTTTT+TGG | + | chr1.4:68571874-68571893 | MS.gene21056:intron | 25.0% |
| AACAAAAAGTTTAGGTGAGA+TGG | + | chr1.4:68572494-68572513 | MS.gene21056:intron | 30.0% | |
| AGAGACAAATGCAAAGATTA+TGG | + | chr1.4:68572031-68572050 | MS.gene21056:CDS | 30.0% | |
| AGGAAATGCTTAAATGTTTG+TGG | + | chr1.4:68574271-68574290 | MS.gene21056:intron | 30.0% | |
| ATAAGTGACTTCAATAGTGA+AGG | - | chr1.4:68573054-68573073 | None:intergenic | 30.0% | |
| ATCACGTGAGTATATTCAAT+AGG | + | chr1.4:68573096-68573115 | MS.gene21056:intron | 30.0% | |
| CTTCGAACTTCAAAAAGAAT+TGG | + | chr1.4:68573646-68573665 | MS.gene21056:CDS | 30.0% | |
| GAACTTAAAGATCAATTAGC+AGG | + | chr1.4:68574570-68574589 | MS.gene21056:CDS | 30.0% | |
| GAATTCAGTTCATATCTACA+AGG | - | chr1.4:68572632-68572651 | None:intergenic | 30.0% | |
| GGGTCATTTGAATATACAAT+TGG | - | chr1.4:68572907-68572926 | None:intergenic | 30.0% | |
| GTAAATGATCGCATGATAAT+AGG | - | chr1.4:68574451-68574470 | None:intergenic | 30.0% | |
| TAAAGAAACTCTAACTAGAC+AGG | + | chr1.4:68571796-68571815 | MS.gene21056:CDS | 30.0% | |
| TAAGGTCTTTACATTAGTAG+CGG | + | chr1.4:68572591-68572610 | MS.gene21056:intron | 30.0% | |
| TAGAATTGAGCGTGATATTA+TGG | + | chr1.4:68573796-68573815 | MS.gene21056:CDS | 30.0% | |
| TCACGTGAGTATATTCAATA+GGG | + | chr1.4:68573097-68573116 | MS.gene21056:intron | 30.0% | |
| TCACTTATTGTACTGCAATA+TGG | + | chr1.4:68573066-68573085 | MS.gene21056:intron | 30.0% | |
| TCATTACTTCATCGATAACT+TGG | - | chr1.4:68573242-68573261 | None:intergenic | 30.0% | |
| TGTGGTAATTCAGAAAAATG+TGG | - | chr1.4:68572735-68572754 | None:intergenic | 30.0% | |
| TTATTGTACTGCAATATGGA+AGG | + | chr1.4:68573070-68573089 | MS.gene21056:intron | 30.0% | |
| TTCAGTTGATCCTTTGTTAA+AGG | + | chr1.4:68571670-68571689 | MS.gene21056:CDS | 30.0% | |
| TTGTGAACTGCGAAAATTAT+TGG | + | chr1.4:68573850-68573869 | MS.gene21056:CDS | 30.0% | |
| TTTAATGTAGGGAGGAAATT+GGG | + | chr1.4:68572788-68572807 | MS.gene21056:intron | 30.0% | |
| ! | AGTGATTTTCCAACTTAGAA+TGG | - | chr1.4:68572820-68572839 | None:intergenic | 30.0% |
| ! | ATAAGAGAGTTTTCCAACAA+TGG | - | chr1.4:68572662-68572681 | None:intergenic | 30.0% |
| ! | TCGATGAAGTAATGAACTTT+TGG | + | chr1.4:68573247-68573266 | MS.gene21056:intron | 30.0% |
| ! | TGATTTCACTAAGTTGACTA+AGG | - | chr1.4:68574491-68574510 | None:intergenic | 30.0% |
| ! | TTTTAATGTAGGGAGGAAAT+TGG | + | chr1.4:68572787-68572806 | MS.gene21056:intron | 30.0% |
| !! | ATCTAATGCAGTTTTGGTAA+TGG | - | chr1.4:68573403-68573422 | None:intergenic | 30.0% |
| !! | GGCTTTCTTTTCTTTATTTG+AGG | + | chr1.4:68574060-68574079 | MS.gene21056:intron | 30.0% |
| !! | TTCATTTTAGCATATCCCAT+TGG | + | chr1.4:68572411-68572430 | MS.gene21056:intron | 30.0% |
| !! | TTGATTTGGTAATAAGCTTG+TGG | - | chr1.4:68572753-68572772 | None:intergenic | 30.0% |
| !!! | CTGTTATAGATCTGCTTTTT+GGG | + | chr1.4:68574309-68574328 | MS.gene21056:intron | 30.0% |
| AATTGAGCGTGATATTATGG+AGG | + | chr1.4:68573799-68573818 | MS.gene21056:CDS | 35.0% | |
| ACTGCGAAAATTATTGGATG+AGG | + | chr1.4:68573856-68573875 | MS.gene21056:CDS | 35.0% | |
| AGAAAAAAATGAGCAGCTTC+AGG | + | chr1.4:68572088-68572107 | MS.gene21056:CDS | 35.0% | |
| AGAAGGTTGAGTAGATACTT+TGG | + | chr1.4:68572443-68572462 | MS.gene21056:intron | 35.0% | |
| AGAGAAGATGAATAAGCTAC+TGG | + | chr1.4:68573895-68573914 | MS.gene21056:CDS | 35.0% | |
| AGGAAAGCAACAAACAGTTT+CGG | + | chr1.4:68574590-68574609 | MS.gene21056:CDS | 35.0% | |
| CGTGGTTTATGAATATCTCT+TGG | + | chr1.4:68572171-68572190 | MS.gene21056:intron | 35.0% | |
| CTATGTACATAATGTTCCGT+TGG | - | chr1.4:68573446-68573465 | None:intergenic | 35.0% | |
| GAATCGTGCAAAACAAAAAG+TGG | - | chr1.4:68572234-68572253 | None:intergenic | 35.0% | |
| GAATTCTTATCGACCATTGT+TGG | + | chr1.4:68572646-68572665 | MS.gene21056:intron | 35.0% | |
| GACTAAGGAATTAGAATCAC+AGG | + | chr1.4:68573988-68574007 | MS.gene21056:CDS | 35.0% | |
| GAGTATATTCAATAGGGACT+GGG | + | chr1.4:68573103-68573122 | MS.gene21056:intron | 35.0% | |
| GGAAAACTCTCTTATTCTTG+TGG | + | chr1.4:68572667-68572686 | MS.gene21056:intron | 35.0% | |
| GGGATATGCTAAAATGAAAG+AGG | - | chr1.4:68572409-68572428 | None:intergenic | 35.0% | |
| GTTTGTGGTTACAGTGAATT+GGG | + | chr1.4:68574286-68574305 | MS.gene21056:intron | 35.0% | |
| TAATAACAAGGGCAAAGATC+AGG | - | chr1.4:68574023-68574042 | None:intergenic | 35.0% | |
| TGAGTATATTCAATAGGGAC+TGG | + | chr1.4:68573102-68573121 | MS.gene21056:intron | 35.0% | |
| TGTTTGTGGTTACAGTGAAT+TGG | + | chr1.4:68574285-68574304 | MS.gene21056:intron | 35.0% | |
| TTAAGATCATGTCTGCTCAT+TGG | + | chr1.4:68573957-68573976 | MS.gene21056:CDS | 35.0% | |
| ! | ATCAACTGAAGCTTGTTTGT+CGG | - | chr1.4:68571660-68571679 | None:intergenic | 35.0% |
| ! | CATCACAATTTTGAATCCAG+AGG | - | chr1.4:68574649-68574668 | None:intergenic | 35.0% |
| ! | GAATAAGCTACTGGTTGTTA+AGG | + | chr1.4:68573904-68573923 | MS.gene21056:CDS | 35.0% |
| ! | GATGGATTTCAAAACACAGT+TGG | + | chr1.4:68574109-68574128 | MS.gene21056:intron | 35.0% |
| ! | GCAGCTTGATAATTTACAGA+AGG | + | chr1.4:68573724-68573743 | MS.gene21056:CDS | 35.0% |
| ! | GTCAGAATCTAATGCAGTTT+TGG | - | chr1.4:68573409-68573428 | None:intergenic | 35.0% |
| !! | GCTGTTATAGATCTGCTTTT+TGG | + | chr1.4:68574308-68574327 | MS.gene21056:intron | 35.0% |
| !! | TCTTGGTGGTATTTTCAAAG+CGG | + | chr1.4:68574685-68574704 | MS.gene21056:CDS | 35.0% |
| !! | TTTTCATTGATGGGCATGAT+TGG | + | chr1.4:68574419-68574438 | MS.gene21056:intron | 35.0% |
| !!! | ACACTAGATGCCCATTTTTT+AGG | + | chr1.4:68572362-68572381 | MS.gene21056:intron | 35.0% |
| !!! | GCACTCATTTTGTGTCATTT+AGG | + | chr1.4:68574251-68574270 | MS.gene21056:intron | 35.0% |
| !!! | GTTTGCTTTTCTAGCTGAAA+TGG | + | chr1.4:68572274-68572293 | MS.gene21056:intron | 35.0% |
| !!! | TTCTACTTTTGGAGTCTTTG+TGG | + | chr1.4:68571938-68571957 | MS.gene21056:intron | 35.0% |
| AAATACCACCAAGACTAGCA+TGG | - | chr1.4:68574679-68574698 | None:intergenic | 40.0% | |
| AAGAATTCTGGCAGCATCTA+TGG | - | chr1.4:68573020-68573039 | None:intergenic | 40.0% | |
| ACAGAAGGATCTTAAGGCAA+GGG | + | chr1.4:68573739-68573758 | MS.gene21056:CDS | 40.0% | |
| GACTAAGGATGTTCAGATGA+TGG | - | chr1.4:68574476-68574495 | None:intergenic | 40.0% | |
| GACTTTCTTTGGCCAAGTAA+AGG | - | chr1.4:68572521-68572540 | None:intergenic | 40.0% | |
| GATAAGATCCTCTCCATTAC+TGG | - | chr1.4:68573143-68573162 | None:intergenic | 40.0% | |
| GATTCAGCACATAAAGGAGT+TGG | + | chr1.4:68573541-68573560 | MS.gene21056:intron | 40.0% | |
| TACAGAAGGATCTTAAGGCA+AGG | + | chr1.4:68573738-68573757 | MS.gene21056:CDS | 40.0% | |
| TCATTGGAAGCTCAAGACTA+AGG | + | chr1.4:68573973-68573992 | MS.gene21056:CDS | 40.0% | |
| TGCAAATATGGGCACAACAT+AGG | - | chr1.4:68572981-68573000 | None:intergenic | 40.0% | |
| TTCAAACTCTTCTGCTGAGA+AGG | + | chr1.4:68572112-68572131 | MS.gene21056:CDS | 40.0% | |
| ! | ACTAGTTCTCTGTTGACCAA+CGG | + | chr1.4:68573427-68573446 | MS.gene21056:intron | 40.0% |
| ! | GTCTTTAGCTTCTGAGTTGA+AGG | + | chr1.4:68571733-68571752 | MS.gene21056:CDS | 40.0% |
| ! | TAGTTCTCTAAGAGAGCATG+AGG | + | chr1.4:68573679-68573698 | MS.gene21056:CDS | 40.0% |
| ! | TTTGGAGTCTTTGTGGTTGT+GGG | + | chr1.4:68571945-68571964 | MS.gene21056:intron | 40.0% |
| !! | GAAGAAGAGAGTGTTGAAGT+TGG | + | chr1.4:68574160-68574179 | MS.gene21056:CDS | 40.0% |
| !! | TAGCATATCCCATTGGTCTT+TGG | + | chr1.4:68572418-68572437 | MS.gene21056:intron | 40.0% |
| !! | TTTTCTAGCCAGTAATGGAG+AGG | + | chr1.4:68573132-68573151 | MS.gene21056:intron | 40.0% |
| !!! | CTTTTTGAAGTTCGAAGCAC+TGG | - | chr1.4:68573643-68573662 | None:intergenic | 40.0% |
| !!! | TTTTGGAGTCTTTGTGGTTG+TGG | + | chr1.4:68571944-68571963 | MS.gene21056:intron | 40.0% |
| AAACTACCAACGCTCTAGCA+CGG | - | chr1.4:68572933-68572952 | None:intergenic | 45.0% | |
| ACCTTCTCACCAAAGACCAA+TGG | - | chr1.4:68572430-68572449 | None:intergenic | 45.0% | |
| AGGTGAGATGGACCTTTACT+TGG | + | chr1.4:68572506-68572525 | MS.gene21056:intron | 45.0% | |
| CCTTCTCACCAAAGACCAAT+GGG | - | chr1.4:68572429-68572448 | None:intergenic | 45.0% | |
| CTTGTGGTCCCTTTCTAACT+AGG | + | chr1.4:68572683-68572702 | MS.gene21056:intron | 45.0% | |
| GAAGTTGGAATTCTGTCTGC+AGG | + | chr1.4:68574175-68574194 | MS.gene21056:CDS | 45.0% | |
| GAGGAACGCGTAATTAGACT+AGG | + | chr1.4:68573698-68573717 | MS.gene21056:CDS | 45.0% | |
| GCTCGTAATAGCTAGAGCAA+CGG | + | chr1.4:68573580-68573599 | MS.gene21056:CDS | 45.0% | |
| GGGTAGCATGGTGCAAATAT+GGG | - | chr1.4:68572992-68573011 | None:intergenic | 45.0% | |
| TCAGACGCGCAAACTTCAAA+GGG | + | chr1.4:68574208-68574227 | MS.gene21056:CDS | 45.0% | |
| TCTATGGCAATTGGGTAGCA+TGG | - | chr1.4:68573004-68573023 | None:intergenic | 45.0% | |
| TGGCAGCATCTATGGCAATT+GGG | - | chr1.4:68573012-68573031 | None:intergenic | 45.0% | |
| TGGGTAGCATGGTGCAAATA+TGG | - | chr1.4:68572993-68573012 | None:intergenic | 45.0% | |
| TGTAGGGAGGAAATTGGGAT+TGG | + | chr1.4:68572793-68572812 | MS.gene21056:intron | 45.0% | |
| TTCACAATCCTTGTTCTCCC+CGG | - | chr1.4:68573837-68573856 | None:intergenic | 45.0% | |
| TTGGAGTCTTTGTGGTTGTG+GGG | + | chr1.4:68571946-68571965 | MS.gene21056:intron | 45.0% | |
| ! | GTCTATGTCCATGCTAGTCT+TGG | + | chr1.4:68574668-68574687 | MS.gene21056:CDS | 45.0% |
| !! | GCATGTGTTTTCGAGCAGAT+GGG | + | chr1.4:68574522-68574541 | MS.gene21056:intron | 45.0% |
| !! | GGGATTGGTCCATTCTAAGT+TGG | + | chr1.4:68572808-68572827 | MS.gene21056:intron | 45.0% |
| !! | TATGTCCATGCTAGTCTTGG+TGG | + | chr1.4:68574671-68574690 | MS.gene21056:CDS | 45.0% |
| !! | TGCATGTGTTTTCGAGCAGA+TGG | + | chr1.4:68574521-68574540 | MS.gene21056:intron | 45.0% |
| !! | TTATTATTATAAAAGAAAAA+AGG | - | chr1.4:68572476-68572495 | None:intergenic | 5.0% |
| !!! | ATTAAAATTAATTTTAATGT+AGG | + | chr1.4:68572776-68572795 | MS.gene21056:intron | 5.0% |
| !!! | TTAAAATTAATTTTAATGTA+GGG | + | chr1.4:68572777-68572796 | MS.gene21056:intron | 5.0% |
| !!! | TTAATTTTAATTTTTTGATT+TGG | - | chr1.4:68572767-68572786 | None:intergenic | 5.0% |
| AACTACCAACGCTCTAGCAC+GGG | - | chr1.4:68572932-68572951 | None:intergenic | 50.0% | |
| ATGGAGGCTCTCGCAAAATC+CGG | + | chr1.4:68573815-68573834 | MS.gene21056:CDS | 50.0% | |
| CTCAGACGCGCAAACTTCAA+AGG | + | chr1.4:68574207-68574226 | MS.gene21056:CDS | 50.0% | |
| CTGGCAGCATCTATGGCAAT+TGG | - | chr1.4:68573013-68573032 | None:intergenic | 50.0% | |
| GAAGGAGCTTCGAAGTCGTT+TGG | + | chr1.4:68571751-68571770 | MS.gene21056:CDS | 50.0% | |
| TCTTTGTGGTTGTGGGGTCA+AGG | + | chr1.4:68571952-68571971 | MS.gene21056:intron | 50.0% | |
| ! | GAAACAACGACGTGCTGATC+AGG | + | chr1.4:68574133-68574152 | MS.gene21056:CDS | 50.0% |
| !! | CAGAATTTCTGGGACACCTC+TGG | + | chr1.4:68574630-68574649 | MS.gene21056:CDS | 50.0% |
| !! | CCCATTGGTCTTTGGTGAGA+AGG | + | chr1.4:68572426-68572445 | MS.gene21056:intron | 50.0% |
| CGCAAAATCCGGGGAGAACA+AGG | + | chr1.4:68573826-68573845 | MS.gene21056:CDS | 55.0% | |
| TGGAGGCTCTCGCAAAATCC+GGG | + | chr1.4:68573816-68573835 | MS.gene21056:CDS | 55.0% | |
| ! | TCGAAGTCGTTTGGCTTCGC+AGG | + | chr1.4:68571760-68571779 | MS.gene21056:CDS | 55.0% |
| !! | CTGCGCTGATTGAGCTGATG+CGG | - | chr1.4:68573618-68573637 | None:intergenic | 55.0% |
| ACCAACGCTCTAGCACGGGA+AGG | - | chr1.4:68572928-68572947 | None:intergenic | 60.0% | |
| CCAACGCTCTAGCACGGGAA+GGG | - | chr1.4:68572927-68572946 | None:intergenic | 60.0% | |
| GGAGGCTCTCGCAAAATCCG+GGG | + | chr1.4:68573817-68573836 | MS.gene21056:CDS | 60.0% | |
| TCGAGCAGATGGGAGAGCGA+CGG | + | chr1.4:68574532-68574551 | MS.gene21056:intron | 60.0% | |
| CCCTTCCCGTGCTAGAGCGT+TGG | + | chr1.4:68572924-68572943 | MS.gene21056:intron | 65.0% | |
| CGAGCAGATGGGAGAGCGAC+GGG | + | chr1.4:68574533-68574552 | MS.gene21056:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 68571647 | 68574710 | 68571647 | ID=MS.gene21056 |
| chr1.4 | mRNA | 68571647 | 68574710 | 68571647 | ID=MS.gene21056.t1;Parent=MS.gene21056 |
| chr1.4 | exon | 68571647 | 68571817 | 68571647 | ID=MS.gene21056.t1.exon1;Parent=MS.gene21056.t1 |
| chr1.4 | CDS | 68571647 | 68571817 | 68571647 | ID=cds.MS.gene21056.t1;Parent=MS.gene21056.t1 |
| chr1.4 | exon | 68572026 | 68572133 | 68572026 | ID=MS.gene21056.t1.exon2;Parent=MS.gene21056.t1 |
| chr1.4 | CDS | 68572026 | 68572133 | 68572026 | ID=cds.MS.gene21056.t1;Parent=MS.gene21056.t1 |
| chr1.4 | exon | 68573548 | 68574009 | 68573548 | ID=MS.gene21056.t1.exon3;Parent=MS.gene21056.t1 |
| chr1.4 | CDS | 68573548 | 68574009 | 68573548 | ID=cds.MS.gene21056.t1;Parent=MS.gene21056.t1 |
| chr1.4 | exon | 68574128 | 68574229 | 68574128 | ID=MS.gene21056.t1.exon4;Parent=MS.gene21056.t1 |
| chr1.4 | CDS | 68574128 | 68574229 | 68574128 | ID=cds.MS.gene21056.t1;Parent=MS.gene21056.t1 |
| chr1.4 | exon | 68574540 | 68574710 | 68574540 | ID=MS.gene21056.t1.exon5;Parent=MS.gene21056.t1 |
| chr1.4 | CDS | 68574540 | 68574710 | 68574540 | ID=cds.MS.gene21056.t1;Parent=MS.gene21056.t1 |
| Gene Sequence |
| Protein sequence |
