AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20985


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20985.t1 MTR_1g484830 97.626 337 8 0 1 337 1 337 0.0 652
MS.gene20985.t1 MTR_7g012670 75.000 56 12 1 136 191 2 55 8.39e-18 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20985.t1 AT5G26770 70.270 333 94 2 7 337 6 335 2.54e-164 462
MS.gene20985.t1 AT5G26770 70.270 333 94 2 7 337 6 335 2.54e-164 462
MS.gene20985.t1 AT5G26770 65.730 356 94 3 7 337 6 358 6.96e-159 449
MS.gene20985.t1 AT5G26770 65.730 356 94 3 7 337 6 358 6.96e-159 449
MS.gene20985.t1 AT5G26770 64.264 333 94 3 7 337 6 315 1.46e-144 411
MS.gene20985.t1 AT1G09470 61.468 327 125 1 11 337 11 336 1.88e-136 391
MS.gene20985.t1 AT5G26770 69.643 280 85 0 7 286 6 285 1.12e-134 385
MS.gene20985.t1 AT3G05830 63.018 338 122 3 1 337 1 336 1.51e-132 381
MS.gene20985.t1 AT3G05830 63.018 338 122 3 1 337 1 336 1.51e-132 381
MS.gene20985.t1 AT1G09470 60.245 327 128 2 11 337 11 335 8.95e-130 374
MS.gene20985.t1 AT1G09470 60.245 327 128 2 11 337 11 335 8.95e-130 374
MS.gene20985.t1 AT3G05830 60.684 351 122 4 1 337 1 349 5.59e-129 372
MS.gene20985.t1 AT1G09483 67.925 106 32 2 233 337 1 105 2.30e-42 142

Find 56 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTTGATCCTTTGTTAA+AGG 0.155858 1.3:-60149391 MS.gene20985:CDS
AAAAGCAAAATCAGAATTTC+TGG 0.195429 1.3:-60146445 MS.gene20985:CDS
TAGAATTGAGCGTGATATTA+TGG 0.255210 1.3:-60147268 MS.gene20985:CDS
TTCATCTTCTCTATATTCTT+AGG 0.270281 1.3:+60147180 None:intergenic
TTGTGAACTGCGAAAATTAT+TGG 0.291074 1.3:-60147214 MS.gene20985:CDS
TGGTAAATTGCAGAAGAAAT+TGG 0.293833 1.3:-60148998 MS.gene20985:CDS
GTCTTTAGCTTCTGAGTTGA+AGG 0.308444 1.3:-60149328 MS.gene20985:CDS
AAGATTATGGAAATGGAAAT+TGG 0.308528 1.3:-60149018 MS.gene20985:CDS
AGAGACAAATGCAAAGATTA+TGG 0.320596 1.3:-60149031 MS.gene20985:CDS
AAATGCAAAGATTATGGAAA+TGG 0.386311 1.3:-60149025 MS.gene20985:CDS
CAGAATTTCTGGGACACCTC+TGG 0.394928 1.3:-60146434 MS.gene20985:CDS
AATATTGATTCAGCACATAA+AGG 0.405506 1.3:-60147529 MS.gene20985:intron
TAATTTACAGAAGGATCTTA+AGG 0.405711 1.3:-60147331 MS.gene20985:CDS
ATGGAGGCTCTCGCAAAATC+CGG 0.409252 1.3:-60147249 MS.gene20985:CDS
GAAACAACGACGTGCTGATC+AGG 0.420227 1.3:-60146931 MS.gene20985:CDS
GAAGGAGCTTCGAAGTCGTT+TGG 0.422346 1.3:-60149310 MS.gene20985:CDS
GAATAAGCTACTGGTTGTTA+AGG 0.427044 1.3:-60147160 MS.gene20985:CDS
GAAGAAGAGAGTGTTGAAGT+TGG 0.430394 1.3:-60146904 MS.gene20985:CDS
TCGAAGTCGTTTGGCTTCGC+AGG 0.437680 1.3:-60149301 MS.gene20985:CDS
TTAAGATCATGTCTGCTCAT+TGG 0.439395 1.3:-60147107 MS.gene20985:CDS
CGCAAAATCCGGGGAGAACA+AGG 0.444877 1.3:-60147238 MS.gene20985:CDS
ATCAACTGAAGCTTGTTTGT+CGG 0.455999 1.3:+60149404 None:intergenic
AGTTAGAGTTTCTTTAACAT+AGG 0.456089 1.3:+60149272 None:intergenic
CTCAGACGCGCAAACTTCAA+AGG 0.472445 1.3:-60146857 MS.gene20985:CDS
GTCTATGTCCATGCTAGTCT+TGG 0.474536 1.3:-60146396 MS.gene20985:CDS
TGATGAAATAGTTAGACTTA+AGG 0.477477 1.3:-60147136 MS.gene20985:CDS
GACTAAGGAATTAGAATCAC+AGG 0.477639 1.3:-60147076 MS.gene20985:intron
TTCAAACTCTTCTGCTGAGA+AGG 0.479809 1.3:-60148950 MS.gene20985:intron
TGGAGGCTCTCGCAAAATCC+GGG 0.485779 1.3:-60147248 MS.gene20985:CDS
CGAGCAGATGGGAGAGCGAC+GGG 0.486908 1.3:-60146531 MS.gene20985:intron
TTCACAATCCTTGTTCTCCC+CGG 0.489475 1.3:+60147230 None:intergenic
GAACTTAAAGATCAATTAGC+AGG 0.491351 1.3:-60146494 MS.gene20985:CDS
AGGAAAGCAACAAACAGTTT+CGG 0.509158 1.3:-60146474 MS.gene20985:CDS
GATTCAGCACATAAAGGAGT+TGG 0.509544 1.3:-60147523 MS.gene20985:intron
TCATTCAAATCCTTTAACAA+AGG 0.512856 1.3:+60149381 None:intergenic
TATGTCCATGCTAGTCTTGG+TGG 0.514229 1.3:-60146393 MS.gene20985:CDS
ACTGCGAAAATTATTGGATG+AGG 0.521280 1.3:-60147208 MS.gene20985:CDS
TCATTGGAAGCTCAAGACTA+AGG 0.525004 1.3:-60147091 MS.gene20985:CDS
TAAAGAAACTCTAACTAGAC+AGG 0.538869 1.3:-60149265 MS.gene20985:intron
AGAGAAGATGAATAAGCTAC+TGG 0.539996 1.3:-60147169 MS.gene20985:CDS
AAAGCAAAATCAGAATTTCT+GGG 0.542452 1.3:-60146444 MS.gene20985:CDS
ACAGAAGGATCTTAAGGCAA+GGG 0.550488 1.3:-60147325 MS.gene20985:CDS
TACAGAAGGATCTTAAGGCA+AGG 0.554800 1.3:-60147326 MS.gene20985:CDS
CTGCGCTGATTGAGCTGATG+CGG 0.556870 1.3:+60147449 None:intergenic
TCAGACGCGCAAACTTCAAA+GGG 0.558261 1.3:-60146856 MS.gene20985:intron
TTGTTTGTCGGAAATTGACA+TGG 0.561919 1.3:+60149416 None:intergenic
GCAGCTTGATAATTTACAGA+AGG 0.573568 1.3:-60147340 MS.gene20985:CDS
GAAGTTGGAATTCTGTCTGC+AGG 0.579748 1.3:-60146889 MS.gene20985:CDS
TCGAGCAGATGGGAGAGCGA+CGG 0.608995 1.3:-60146532 MS.gene20985:intron
TAGTTCTCTAAGAGAGCATG+AGG 0.613433 1.3:-60147385 MS.gene20985:CDS
GAGGAACGCGTAATTAGACT+AGG 0.621102 1.3:-60147366 MS.gene20985:CDS
AAATACCACCAAGACTAGCA+TGG 0.627363 1.3:+60146388 None:intergenic
AATTGAGCGTGATATTATGG+AGG 0.642028 1.3:-60147265 MS.gene20985:CDS
TGTTTGTCGGAAATTGACAT+GGG 0.647558 1.3:+60149417 None:intergenic
GGAGGCTCTCGCAAAATCCG+GGG 0.664732 1.3:-60147247 MS.gene20985:CDS
GCTCGTAATAGCTAGAGCAA+CGG 0.671851 1.3:-60147484 MS.gene20985:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAACAAAAAGTTT+AGG - chr1.3:60147213-60147232 MS.gene20985:CDS 10.0%
!! TATAAAAGAAAAAAGGTAAT+AGG + chr1.3:60147196-60147215 None:intergenic 15.0%
!!! AAATTTTTGTATCAGTTTTA+CGG - chr1.3:60147570-60147589 MS.gene20985:intron 15.0%
!!! AATTATTTGACCATTTTTTT+GGG - chr1.3:60149067-60149086 MS.gene20985:intron 15.0%
!!! TTAATTCTTCAATTTTTTCT+AGG - chr1.3:60147436-60147455 MS.gene20985:CDS 15.0%
!! AATCCATCAATAAACTTAAA+TGG + chr1.3:60148823-60148842 None:intergenic 20.0%
!! ACATAGTTTACTTAACAATA+AGG - chr1.3:60147300-60147319 MS.gene20985:CDS 20.0%
!! ACTTATAAGATATGATGTAT+AGG + chr1.3:60147938-60147957 None:intergenic 20.0%
!! ATGATAAAAAACAAAGCTTT+CGG - chr1.3:60146428-60146447 MS.gene20985:CDS 20.0%
!! TTTAAAGGTTAATGCATAAT+TGG + chr1.3:60148004-60148023 None:intergenic 20.0%
!!! AAATTAATTTTAATGTAGGG+AGG - chr1.3:60147507-60147526 MS.gene20985:CDS 20.0%
!!! AAGTTACAATTTTTTTAGCA+TGG + chr1.3:60146628-60146647 None:intergenic 20.0%
!!! AATCCATTTAAGTTTATTGA+TGG - chr1.3:60148817-60148836 MS.gene20985:intron 20.0%
!!! GAATTATTTGACCATTTTTT+TGG - chr1.3:60149066-60149085 MS.gene20985:intron 20.0%
!!! TTATACAAGTTTTCATTGAT+GGG - chr1.3:60149136-60149155 MS.gene20985:intron 20.0%
!!! TTATGGATTATATTTTTCAC+AGG - chr1.3:60146732-60146751 MS.gene20985:intron 20.0%
!!! TTTTTCTTCATTAAGGAATA+AGG + chr1.3:60148089-60148108 None:intergenic 20.0%
!!! TTTTTTAGTACTGCAATTTA+TGG - chr1.3:60146715-60146734 MS.gene20985:intron 20.0%
! AAAAGCAAAATCAGAATTTC+TGG - chr1.3:60149345-60149364 MS.gene20985:CDS 25.0%
! AAAGCAAAATCAGAATTTCT+GGG - chr1.3:60149346-60149365 MS.gene20985:CDS 25.0%
! AAATGCAAAGATTATGGAAA+TGG - chr1.3:60146765-60146784 MS.gene20985:intron 25.0%
! AACCACGAAAAGAAATAATA+AGG + chr1.3:60146886-60146905 None:intergenic 25.0%
! AAGATTATGGAAATGGAAAT+TGG - chr1.3:60146772-60146791 MS.gene20985:intron 25.0%
! AATTAACATCCTAGTTAGAA+AGG + chr1.3:60147422-60147441 None:intergenic 25.0%
! AATTCAGTTCATATCTACAA+GGG + chr1.3:60147358-60147377 None:intergenic 25.0%
! AGTAACAAGATCCTAAAAAA+TGG + chr1.3:60147103-60147122 None:intergenic 25.0%
! AGTTAGAGTTTCTTTAACAT+AGG + chr1.3:60146521-60146540 None:intergenic 25.0%
! ATATGAACGAGTAATAACAA+GGG + chr1.3:60148760-60148779 None:intergenic 25.0%
! ATTAACATCCTAGTTAGAAA+GGG + chr1.3:60147421-60147440 None:intergenic 25.0%
! ATTACTCGTTCATATACTTA+GGG - chr1.3:60148765-60148784 MS.gene20985:intron 25.0%
! ATTCTTTGTAACTAAAGTCT+CGG - chr1.3:60148214-60148233 MS.gene20985:intron 25.0%
! CTAGAGTACAATCTATTTAA+AGG + chr1.3:60148019-60148038 None:intergenic 25.0%
! GATAAGAAACACTACAAATA+AGG - chr1.3:60149108-60149127 MS.gene20985:intron 25.0%
! GTAACAAGATCCTAAAAAAT+GGG + chr1.3:60147102-60147121 None:intergenic 25.0%
! TAAATTCTTGCCCAAAAAAA+TGG + chr1.3:60149080-60149099 None:intergenic 25.0%
! TAATTTACAGAAGGATCTTA+AGG - chr1.3:60148459-60148478 MS.gene20985:intron 25.0%
! TATATGAACGAGTAATAACA+AGG + chr1.3:60148761-60148780 None:intergenic 25.0%
! TATTACTCGTTCATATACTT+AGG - chr1.3:60148764-60148783 MS.gene20985:intron 25.0%
! TCATTCAAATCCTTTAACAA+AGG + chr1.3:60146412-60146431 None:intergenic 25.0%
! TGATGAAATAGTTAGACTTA+AGG - chr1.3:60148654-60148673 MS.gene20985:intron 25.0%
! TTCATCTTCTCTATATTCTT+AGG + chr1.3:60148613-60148632 None:intergenic 25.0%
!! AGTATCAATCATTCTACTTT+TGG - chr1.3:60146655-60146674 MS.gene20985:intron 25.0%
!! CTTATACAAGTTTTCATTGA+TGG - chr1.3:60149135-60149154 MS.gene20985:intron 25.0%
!! TGTCATCTTTTTCTTCATTA+AGG + chr1.3:60148096-60148115 None:intergenic 25.0%
!!! AAACTTAAATGGATTAGCTA+TGG + chr1.3:60148812-60148831 None:intergenic 25.0%
!!! AATATTGATTCAGCACATAA+AGG - chr1.3:60148261-60148280 MS.gene20985:intron 25.0%
!!! ATAATTTTTCTAGCCAGTAA+TGG - chr1.3:60147854-60147873 MS.gene20985:intron 25.0%
!!! ATTAGTCTTAAGACTTTCTT+TGG + chr1.3:60147259-60147278 None:intergenic 25.0%
!!! GAAATTCTGATTTTGCTTTT+CGG + chr1.3:60149345-60149364 None:intergenic 25.0%
!!! TACCTTATTATTTCTTTTCG+TGG - chr1.3:60146881-60146900 MS.gene20985:CDS 25.0%
!!! TTGTTCTGTTTTTCTCTTTT+TGG - chr1.3:60146602-60146621 MS.gene20985:intron 25.0%
AACAAAAAGTTTAGGTGAGA+TGG - chr1.3:60147221-60147240 MS.gene20985:CDS 30.0%
AGAGACAAATGCAAAGATTA+TGG - chr1.3:60146759-60146778 MS.gene20985:intron 30.0%
AGGAAATGCTTAAATGTTTG+TGG - chr1.3:60148997-60149016 MS.gene20985:CDS 30.0%
ATAAGTGACTTCAATAGTGA+AGG + chr1.3:60147781-60147800 None:intergenic 30.0%
ATCACGTGAGTATATTCAAT+AGG - chr1.3:60147823-60147842 MS.gene20985:intron 30.0%
CTTCGAACTTCAAAAAGAAT+TGG - chr1.3:60148372-60148391 MS.gene20985:intron 30.0%
GAACTTAAAGATCAATTAGC+AGG - chr1.3:60149296-60149315 MS.gene20985:CDS 30.0%
GAATTCAGTTCATATCTACA+AGG + chr1.3:60147359-60147378 None:intergenic 30.0%
GGGTCATTTGAATATACAAT+TGG + chr1.3:60147634-60147653 None:intergenic 30.0%
TAAAGAAACTCTAACTAGAC+AGG - chr1.3:60146525-60146544 MS.gene20985:CDS 30.0%
TAAGGTCTTTACATTAGTAG+CGG - chr1.3:60147318-60147337 MS.gene20985:CDS 30.0%
TAGAATTGAGCGTGATATTA+TGG - chr1.3:60148522-60148541 MS.gene20985:intron 30.0%
TCACGTGAGTATATTCAATA+GGG - chr1.3:60147824-60147843 MS.gene20985:intron 30.0%
TCACTTATTGTACTGCAATA+TGG - chr1.3:60147793-60147812 MS.gene20985:intron 30.0%
TCATTACTTCATCGATAACT+TGG + chr1.3:60147969-60147988 None:intergenic 30.0%
TGGTAAATTGCAGAAGAAAT+TGG - chr1.3:60146792-60146811 MS.gene20985:intron 30.0%
TGTGGTAATTCAGAAAAATG+TGG + chr1.3:60147462-60147481 None:intergenic 30.0%
TTATTGTACTGCAATATGGA+AGG - chr1.3:60147797-60147816 MS.gene20985:intron 30.0%
TTCAGTTGATCCTTTGTTAA+AGG - chr1.3:60146399-60146418 MS.gene20985:CDS 30.0%
TTGTGAACTGCGAAAATTAT+TGG - chr1.3:60148576-60148595 MS.gene20985:intron 30.0%
TTTAATGTAGGGAGGAAATT+GGG - chr1.3:60147515-60147534 MS.gene20985:CDS 30.0%
! AGTGATTTTCCAACTTAGAA+TGG + chr1.3:60147547-60147566 None:intergenic 30.0%
! ATAAGAGAGTTTTCCAACAA+TGG + chr1.3:60147389-60147408 None:intergenic 30.0%
! TCGATGAAGTAATGAACTTT+TGG - chr1.3:60147974-60147993 MS.gene20985:intron 30.0%
! TGATTTCACTAAGTTGACTA+AGG + chr1.3:60149217-60149236 None:intergenic 30.0%
! TTTTAATGTAGGGAGGAAAT+TGG - chr1.3:60147514-60147533 MS.gene20985:CDS 30.0%
!! ATCTAATGCAGTTTTGGTAA+TGG + chr1.3:60148130-60148149 None:intergenic 30.0%
!! GGCTTTCTTTTCTTTATTTG+AGG - chr1.3:60148786-60148805 MS.gene20985:intron 30.0%
!! TTCATTTTAGCATATCCCAT+TGG - chr1.3:60147138-60147157 MS.gene20985:CDS 30.0%
!! TTGATTTGGTAATAAGCTTG+TGG + chr1.3:60147480-60147499 None:intergenic 30.0%
!!! CTGTTATAGATCTGCTTTTT+GGG - chr1.3:60149035-60149054 MS.gene20985:CDS 30.0%
AAGAATTCTAGCAGCATCTA+TGG + chr1.3:60147747-60147766 None:intergenic 35.0%
AATTGAGCGTGATATTATGG+AGG - chr1.3:60148525-60148544 MS.gene20985:intron 35.0%
ACTGCGAAAATTATTGGATG+AGG - chr1.3:60148582-60148601 MS.gene20985:intron 35.0%
AGAAAAAAATGAGCAGCTTC+AGG - chr1.3:60146816-60146835 MS.gene20985:intron 35.0%
AGAAGGTTGAGTAGATACTT+TGG - chr1.3:60147170-60147189 MS.gene20985:CDS 35.0%
AGAGAAGATGAATAAGCTAC+TGG - chr1.3:60148621-60148640 MS.gene20985:intron 35.0%
AGGAAAGCAACAAACAGTTT+CGG - chr1.3:60149316-60149335 MS.gene20985:CDS 35.0%
CGTGGTTTATGAATATCTCT+TGG - chr1.3:60146899-60146918 MS.gene20985:CDS 35.0%
CTATGTACATAATGTTCCGT+TGG + chr1.3:60148173-60148192 None:intergenic 35.0%
GAATCGTGCAAAACAAAAAG+TGG + chr1.3:60146962-60146981 None:intergenic 35.0%
GAATTCTTATCGACCATTGT+TGG - chr1.3:60147373-60147392 MS.gene20985:CDS 35.0%
GACTAAGGAATTAGAATCAC+AGG - chr1.3:60148714-60148733 MS.gene20985:intron 35.0%
GAGTATATTCAATAGGGACT+GGG - chr1.3:60147830-60147849 MS.gene20985:intron 35.0%
GGAAAACTCTCTTATTCTTG+TGG - chr1.3:60147394-60147413 MS.gene20985:CDS 35.0%
GGGATATGCTAAAATGAAAG+AGG + chr1.3:60147136-60147155 None:intergenic 35.0%
GTTTGTGGTTACAGTGAATT+GGG - chr1.3:60149012-60149031 MS.gene20985:CDS 35.0%
TAATAACAAGGGCAAAGATC+AGG + chr1.3:60148749-60148768 None:intergenic 35.0%
TGAGTATATTCAATAGGGAC+TGG - chr1.3:60147829-60147848 MS.gene20985:intron 35.0%
TGTTTGTGGTTACAGTGAAT+TGG - chr1.3:60149011-60149030 MS.gene20985:CDS 35.0%
TTAAGATCATGTCTGCTCAT+TGG - chr1.3:60148683-60148702 MS.gene20985:intron 35.0%
! ATCAACTGAAGCTTGTTTGT+CGG + chr1.3:60146389-60146408 None:intergenic 35.0%
! CATCACAATTTTGAATCCAG+AGG + chr1.3:60149375-60149394 None:intergenic 35.0%
! GAATAAGCTACTGGTTGTTA+AGG - chr1.3:60148630-60148649 MS.gene20985:intron 35.0%
! GATGGATTTCAAAACACAGT+TGG - chr1.3:60148835-60148854 MS.gene20985:intron 35.0%
! GCAGCTTGATAATTTACAGA+AGG - chr1.3:60148450-60148469 MS.gene20985:intron 35.0%
! GTCAGAATCTAATGCAGTTT+TGG + chr1.3:60148136-60148155 None:intergenic 35.0%
!! GCTGTTATAGATCTGCTTTT+TGG - chr1.3:60149034-60149053 MS.gene20985:CDS 35.0%
!! TCTTGGTGGTATTTTCAAAG+CGG - chr1.3:60149411-60149430 MS.gene20985:CDS 35.0%
!! TTTTCATTGATGGGCATGAT+TGG - chr1.3:60149145-60149164 MS.gene20985:intron 35.0%
!!! ACACTAGATGCCCATTTTTT+AGG - chr1.3:60147089-60147108 MS.gene20985:CDS 35.0%
!!! CTTTTTGAAGTTCGAAGCAT+TGG + chr1.3:60148369-60148388 None:intergenic 35.0%
!!! GCACTCATTTTGTGTCATTT+AGG - chr1.3:60148977-60148996 MS.gene20985:CDS 35.0%
!!! GTTTGCTTTTCTAGCTGAAA+TGG - chr1.3:60147001-60147020 MS.gene20985:intron 35.0%
!!! TTCTACTTTTGGAGTCTTTG+TGG - chr1.3:60146666-60146685 MS.gene20985:intron 35.0%
AAATACCACCAAGACTAGCA+TGG + chr1.3:60149405-60149424 None:intergenic 40.0%
ACAGAAGGATCTTAAGGCAA+GGG - chr1.3:60148465-60148484 MS.gene20985:intron 40.0%
GACTAAGGATGTTCAGATGA+TGG + chr1.3:60149202-60149221 None:intergenic 40.0%
GACTTTCTTTGGCCAAGTAA+AGG + chr1.3:60147248-60147267 None:intergenic 40.0%
GATAAGATCCTCTCCATTAC+TGG + chr1.3:60147870-60147889 None:intergenic 40.0%
GATTCAGCACATAAAGGAGT+TGG - chr1.3:60148267-60148286 MS.gene20985:intron 40.0%
TACAGAAGGATCTTAAGGCA+AGG - chr1.3:60148464-60148483 MS.gene20985:intron 40.0%
TAGCAGCATCTATGGCAATT+GGG + chr1.3:60147739-60147758 None:intergenic 40.0%
TCATTGGAAGCTCAAGACTA+AGG - chr1.3:60148699-60148718 MS.gene20985:intron 40.0%
TGCAAATATGGGCACAACAT+AGG + chr1.3:60147708-60147727 None:intergenic 40.0%
TTCAAACTCTTCTGCTGAGA+AGG - chr1.3:60146840-60146859 MS.gene20985:intron 40.0%
! ACTAGTTCTCTGTTGACCAA+CGG - chr1.3:60148154-60148173 MS.gene20985:intron 40.0%
! GTCTTTAGCTTCTGAGTTGA+AGG - chr1.3:60146462-60146481 MS.gene20985:CDS 40.0%
! TAGTTCTCTAAGAGAGCATG+AGG - chr1.3:60148405-60148424 MS.gene20985:intron 40.0%
! TTTGGAGTCTTTGTGGTTGT+GGG - chr1.3:60146673-60146692 MS.gene20985:intron 40.0%
!! GAAGAAGAGAGTGTTGAAGT+TGG - chr1.3:60148886-60148905 MS.gene20985:intron 40.0%
!! GTATGTGTTTTCGAGCAGAT+GGG - chr1.3:60149248-60149267 MS.gene20985:intron 40.0%
!! TAGCATATCCCATTGGTCTT+TGG - chr1.3:60147145-60147164 MS.gene20985:CDS 40.0%
!! TGTATGTGTTTTCGAGCAGA+TGG - chr1.3:60149247-60149266 MS.gene20985:intron 40.0%
!! TTTTCTAGCCAGTAATGGAG+AGG - chr1.3:60147859-60147878 MS.gene20985:intron 40.0%
!!! TTTTGGAGTCTTTGTGGTTG+TGG - chr1.3:60146672-60146691 MS.gene20985:intron 40.0%
AAACTACCAACGCTCTAGCA+CGG + chr1.3:60147660-60147679 None:intergenic 45.0%
ACCTTCTCACCAAAGACCAA+TGG + chr1.3:60147157-60147176 None:intergenic 45.0%
AGGTGAGATGGACCTTTACT+TGG - chr1.3:60147233-60147252 MS.gene20985:CDS 45.0%
CCTTCTCACCAAAGACCAAT+GGG + chr1.3:60147156-60147175 None:intergenic 45.0%
CTAGCAGCATCTATGGCAAT+TGG + chr1.3:60147740-60147759 None:intergenic 45.0%
CTTGTGGTCCCTTTCTAACT+AGG - chr1.3:60147410-60147429 MS.gene20985:CDS 45.0%
GAAGTTGGAATTCTGTCTGC+AGG - chr1.3:60148901-60148920 MS.gene20985:intron 45.0%
GAGGAACGCGTAATTAGACT+AGG - chr1.3:60148424-60148443 MS.gene20985:intron 45.0%
GCTCGTAATAGCTAGAGCAA+CGG - chr1.3:60148306-60148325 MS.gene20985:intron 45.0%
GGGTAGCATGGTGCAAATAT+GGG + chr1.3:60147719-60147738 None:intergenic 45.0%
TCAGACGCGCAAACTTCAAA+GGG - chr1.3:60148934-60148953 MS.gene20985:intron 45.0%
TCTATGGCAATTGGGTAGCA+TGG + chr1.3:60147731-60147750 None:intergenic 45.0%
TGGGTAGCATGGTGCAAATA+TGG + chr1.3:60147720-60147739 None:intergenic 45.0%
TGTAGGGAGGAAATTGGGAT+TGG - chr1.3:60147520-60147539 MS.gene20985:intron 45.0%
TTCACAATCCTTGTTCTCCC+CGG + chr1.3:60148563-60148582 None:intergenic 45.0%
TTGGAGTCTTTGTGGTTGTG+GGG - chr1.3:60146674-60146693 MS.gene20985:intron 45.0%
! GTCTATGTCCATGCTAGTCT+TGG - chr1.3:60149394-60149413 MS.gene20985:CDS 45.0%
!! GGGATTGGTCCATTCTAAGT+TGG - chr1.3:60147535-60147554 MS.gene20985:intron 45.0%
!! TATGTCCATGCTAGTCTTGG+TGG - chr1.3:60149397-60149416 MS.gene20985:CDS 45.0%
!! TTATTATTATAAAAGAAAAA+AGG + chr1.3:60147203-60147222 None:intergenic 5.0%
!!! ATTAAAATTAATTTTAATGT+AGG - chr1.3:60147503-60147522 MS.gene20985:CDS 5.0%
!!! TTAAAATTAATTTTAATGTA+GGG - chr1.3:60147504-60147523 MS.gene20985:CDS 5.0%
!!! TTAATTTTAATTTTTTGATT+TGG + chr1.3:60147494-60147513 None:intergenic 5.0%
AACTACCAACGCTCTAGCAC+GGG + chr1.3:60147659-60147678 None:intergenic 50.0%
ATGGAGGCTCTCGCAAAATC+CGG - chr1.3:60148541-60148560 MS.gene20985:intron 50.0%
CTCAGACGCGCAAACTTCAA+AGG - chr1.3:60148933-60148952 MS.gene20985:intron 50.0%
GAAGGAGCTTCGAAGTCGTT+TGG - chr1.3:60146480-60146499 MS.gene20985:CDS 50.0%
TCTTTGTGGTTGTGGGGTCA+AGG - chr1.3:60146680-60146699 MS.gene20985:intron 50.0%
! GAAACAACGACGTGCTGATC+AGG - chr1.3:60148859-60148878 MS.gene20985:intron 50.0%
!! CAGAATTTCTGGGACACCTC+TGG - chr1.3:60149356-60149375 MS.gene20985:CDS 50.0%
!! CCCATTGGTCTTTGGTGAGA+AGG - chr1.3:60147153-60147172 MS.gene20985:CDS 50.0%
CGCAAAATCCGGGGAGAACA+AGG - chr1.3:60148552-60148571 MS.gene20985:intron 55.0%
TGGAGGCTCTCGCAAAATCC+GGG - chr1.3:60148542-60148561 MS.gene20985:intron 55.0%
! TCGAAGTCGTTTGGCTTCGC+AGG - chr1.3:60146489-60146508 MS.gene20985:CDS 55.0%
!! CTGCGCTGATTGAGCTGATG+CGG + chr1.3:60148344-60148363 None:intergenic 55.0%
ACCAACGCTCTAGCACGGGA+AGG + chr1.3:60147655-60147674 None:intergenic 60.0%
CCAACGCTCTAGCACGGGAA+GGG + chr1.3:60147654-60147673 None:intergenic 60.0%
GGAGGCTCTCGCAAAATCCG+GGG - chr1.3:60148543-60148562 MS.gene20985:intron 60.0%
TCGAGCAGATGGGAGAGCGA+CGG - chr1.3:60149258-60149277 MS.gene20985:intron 60.0%
CCCTTCCCGTGCTAGAGCGT+TGG - chr1.3:60147651-60147670 MS.gene20985:intron 65.0%
CGAGCAGATGGGAGAGCGAC+GGG - chr1.3:60149259-60149278 MS.gene20985:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 60146376 60149436 60146376 ID=MS.gene20985
chr1.3 mRNA 60146376 60149436 60146376 ID=MS.gene20985.t1;Parent=MS.gene20985
chr1.3 exon 60149266 60149436 60149266 ID=MS.gene20985.t1.exon1;Parent=MS.gene20985.t1
chr1.3 CDS 60149266 60149436 60149266 ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1
chr1.3 exon 60148951 60149058 60148951 ID=MS.gene20985.t1.exon2;Parent=MS.gene20985.t1
chr1.3 CDS 60148951 60149058 60148951 ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1
chr1.3 exon 60147077 60147538 60147077 ID=MS.gene20985.t1.exon3;Parent=MS.gene20985.t1
chr1.3 CDS 60147077 60147538 60147077 ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1
chr1.3 exon 60146857 60146958 60146857 ID=MS.gene20985.t1.exon4;Parent=MS.gene20985.t1
chr1.3 CDS 60146857 60146958 60146857 ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1
chr1.3 exon 60146376 60146546 60146376 ID=MS.gene20985.t1.exon5;Parent=MS.gene20985.t1
chr1.3 CDS 60146376 60146546 60146376 ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1
Gene Sequence

>MS.gene20985

ATGTCAATTTCCGACAAACAAGCTTCAGTTGATCCTTTGTTAAAGGATTTGAATGATAAAAAACAAAGCTTTCGGAGAAACGTTGTGTCTTTAGCTTCTGAGTTGAAGGAGCTTCGAAGTCGTTTGGCTTCGCAGGAACAATCCTATGTTAAAGAAACTCTAACTAGACAGGTACAAAATTATCATTTTTGTGTGTTTTGAATTATTACTTCTGTGTCTTTTTGTGTTGTTCTGTTTTTCTCTTTTTGGCCATGCTAAAAAAATTGTAACTTTGATTGTAGTATCAATCATTCTACTTTTGGAGTCTTTGTGGTTGTGGGGTCAAGGAAAATTTGATTATTTTTTAGTACTGCAATTTATGGATTATATTTTTCACAGGAAGCAGAGACAAATGCAAAGATTATGGAAATGGAAATTGGTAAATTGCAGAAGAAATTGGAAGAAAAAAATGAGCAGCTTCAGGTTTCAAACTCTTCTGCTGAGAAGGTTTCAATTTCATATACTGTACCTTATTATTTCTTTTCGTGGTTTATGAATATCTCTTGGTCGTATACAGCTGTTTGATTTGAAAATTGAAATGTTTCCACTTTTTGTTTTGCACGATTCTCTATTTTTTTTGTCTTTTGTTTGCTTTTCTAGCTGAAATGGTGTTGATGAAATTGAATTGATTGTATATATTTTTCTCTCATTAAATTAAATTAAATAAATATAACACACTAGATGCCCATTTTTTAGGATCTTGTTACTATTCAGTTGTCCTCTTTCATTTTAGCATATCCCATTGGTCTTTGGTGAGAAGGTTGAGTAGATACTTTGGCCTATTACCTTTTTTCTTTTATAATAATAACAAAAAGTTTAGGTGAGATGGACCTTTACTTGGCCAAAGAAAGTCTTAAGACTAATAGAATATTTATAACGTTAATTACATAGTTTACTTAACAATAAGGTCTTTACATTAGTAGCGGAATTTGATCTCACGCCCTTGTAGATATGAACTGAATTCTTATCGACCATTGTTGGAAAACTCTCTTATTCTTGTGGTCCCTTTCTAACTAGGATGTTAATTCTTCAATTTTTTCTAGGCCACATTTTTCTGAATTACCACAAGCTTATTACCAAATCAAAAAATTAAAATTAATTTTAATGTAGGGAGGAAATTGGGATTGGTCCATTCTAAGTTGGAAAATCACTCATAAATTTTTGTATCAGTTTTACGGCAACTAGTTGATTTTAGATGCATATTAATTACTGATAGCCAATTGTATATTCAAATGACCCTTCCCGTGCTAGAGCGTTGGTAGTTTGAAAACTTTCTACATCTAAATGAAGCCTATGTTGTGCCCATATTTGCACCATGCTACCCAATTGCCATAGATGCTGCTAGAATTCTTATTTATAAGTTCCTTCACTATTGAAGTCACTTATTGTACTGCAATATGGAAGGAAAATCACGTGAGTATATTCAATAGGGACTGGGCATAATTTTTCTAGCCAGTAATGGAGAGGATCTTATCTTATCTTACATATTAAATGCTTTTGTATCATGAATTCAGCTGTCACCTATACATCATATCTTATAAGTGTACTATTCCAAGTTATCGATGAAGTAATGAACTTTTGGAAAGCCAATTATGCATTAACCTTTAAATAGATTGTACTCTAGAAATAGTAAATATATGATCAAAGTATTATTTGCATGAATACATGTATCCTTATTCCTTAATGAAGAAAAAGATGACAATTCATTCTCACCATTACCAAAACTGCATTAGATTCTGACTAGTTCTCTGTTGACCAACGGAACATTATGTACATAGTAACTTCAACATTGTAAGCACATTCTTTGTAACTAAAGTCTCGGTGTCATTTACTCATGATATGTTGTAATATTGATTCAGCACATAAAGGAGTTGGACGATCTTAGAACACAGCTCGTAATAGCTAGAGCAACGGCAGATTCAAGTGCCGCATCAGCTCAATCAGCGCAGCTCCAATGCTTCGAACTTCAAAAAGAATTGGATGAGAAAAATAGTTCTCTAAGAGAGCATGAGGAACGCGTAATTAGACTAGGCGAGCAGCTTGATAATTTACAGAAGGATCTTAAGGCAAGGGAATCTTCGCAAAAGCAATTGAGAGATGAAGTATTTAGAATTGAGCGTGATATTATGGAGGCTCTCGCAAAATCCGGGGAGAACAAGGATTGTGAACTGCGAAAATTATTGGATGAGGTTTCTCCTAAGAATATAGAGAAGATGAATAAGCTACTGGTTGTTAAGGATGATGAAATAGTTAGACTTAAGGATGAAATTAAGATCATGTCTGCTCATTGGAAGCTCAAGACTAAGGAATTAGAATCACAGGTATTGCTGTCCTGATCTTTGCCCTTGTTATTACTCGTTCATATACTTAGGGCTTTCTTTTCTTTATTTGAGGCCATAGCTAATCCATTTAAGTTTATTGATGGATTTCAAAACACAGTTGGAGAAACAACGACGTGCTGATCAGGATCTGAAGAAGAGAGTGTTGAAGTTGGAATTCTGTCTGCAGGAAGCTCGTTCTCAGACGCGCAAACTTCAAAGGGTAAATCTAGCTCTTGCACTTGCACTCATTTTGTGTCATTTAGGAAATGCTTAAATGTTTGTGGTTACAGTGAATTGGGCTGTTATAGATCTGCTTTTTGGGTTTTTTATGAATTATTTGACCATTTTTTTGGGCAAGAATTTATGCATTTAGATAAGAAACACTACAAATAAGGTTTACTTATACAAGTTTTCATTGATGGGCATGATTGGTTGACTCATATTATCATGCGATCATTTACTTCCATCATCTGAACATCCTTAGTCAACTTAGTGAAATCACGTGTTTCGTTGTATGTGTTTTCGAGCAGATGGGAGAGCGACGGGACAAAGCTATTAAAGAACTTAAAGATCAATTAGCAGGAAAGCAACAAACAGTTTCGGATGCCGAAAAGCAAAATCAGAATTTCTGGGACACCTCTGGATTCAAAATTGTGATGTCTATGTCCATGCTAGTCTTGGTGGTATTTTCAAAGCGGTGA

Protein sequence

>MS.gene20985.t1

MSISDKQASVDPLLKDLNDKKQSFRRNVVSLASELKELRSRLASQEQSYVKETLTRQEAETNAKIMEMEIGKLQKKLEEKNEQLQVSNSSAEKHIKELDDLRTQLVIARATADSSAASAQSAQLQCFELQKELDEKNSSLREHEERVIRLGEQLDNLQKDLKARESSQKQLRDEVFRIERDIMEALAKSGENKDCELRKLLDEVSPKNIEKMNKLLVVKDDEIVRLKDEIKIMSAHWKLKTKELESQLEKQRRADQDLKKRVLKLEFCLQEARSQTRKLQRMGERRDKAIKELKDQLAGKQQTVSDAEKQNQNFWDTSGFKIVMSMSMLVLVVFSKR