Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20985.t1 | XP_013469086.1 | 93.5 | 337 | 22 | 0 | 1 | 337 | 1 | 337 | 2.40E-87 | 332.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20985.t1 | F4K1B4 | 70.4 | 331 | 97 | 1 | 7 | 337 | 6 | 335 | 1.7e-60 | 234.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20985.t1 | A0A072VM81 | 93.5 | 337 | 22 | 0 | 1 | 337 | 1 | 337 | 1.7e-87 | 332.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene20985 | 0.839159 | 1.87E-57 | -1.69E-46 |
MS.gene04918 | MS.gene20985 | 0.807729 | 4.39E-50 | -1.69E-46 |
MS.gene049283 | MS.gene20985 | 0.849301 | 3.53E-60 | -1.69E-46 |
MS.gene049368 | MS.gene20985 | 0.849825 | 2.52E-60 | -1.69E-46 |
MS.gene049499 | MS.gene20985 | 0.819531 | 1.11E-52 | -1.69E-46 |
MS.gene049786 | MS.gene20985 | 0.810712 | 1.01E-50 | -1.69E-46 |
MS.gene049983 | MS.gene20985 | 0.856786 | 2.54E-62 | -1.69E-46 |
MS.gene050414 | MS.gene20985 | 0.820052 | 8.41E-53 | -1.69E-46 |
MS.gene050571 | MS.gene20985 | 0.814281 | 1.67E-51 | -1.69E-46 |
MS.gene050646 | MS.gene20985 | 0.803271 | 3.78E-49 | -1.69E-46 |
MS.gene050654 | MS.gene20985 | 0.872347 | 3.41E-67 | -1.69E-46 |
MS.gene050759 | MS.gene20985 | 0.819735 | 9.94E-53 | -1.69E-46 |
MS.gene050941 | MS.gene20985 | 0.827081 | 1.90E-54 | -1.69E-46 |
MS.gene050962 | MS.gene20985 | 0.808836 | 2.55E-50 | -1.69E-46 |
MS.gene051003 | MS.gene20985 | 0.839685 | 1.37E-57 | -1.69E-46 |
MS.gene051234 | MS.gene20985 | 0.802912 | 4.48E-49 | -1.69E-46 |
MS.gene051490 | MS.gene20985 | 0.808627 | 2.82E-50 | -1.69E-46 |
MS.gene051856 | MS.gene20985 | 0.802551 | 5.32E-49 | -1.69E-46 |
MS.gene051975 | MS.gene20985 | 0.806467 | 8.11E-50 | -1.69E-46 |
MS.gene052016 | MS.gene20985 | 0.827854 | 1.24E-54 | -1.69E-46 |
MS.gene052052 | MS.gene20985 | 0.803139 | 4.02E-49 | -1.69E-46 |
MS.gene052197 | MS.gene20985 | 0.811585 | 6.50E-51 | -1.69E-46 |
MS.gene052342 | MS.gene20985 | 0.81519 | 1.05E-51 | -1.69E-46 |
MS.gene052434 | MS.gene20985 | 0.822478 | 2.32E-53 | -1.69E-46 |
MS.gene052463 | MS.gene20985 | 0.856755 | 2.60E-62 | -1.69E-46 |
MS.gene052493 | MS.gene20985 | 0.812971 | 3.24E-51 | -1.69E-46 |
MS.gene052518 | MS.gene20985 | 0.806264 | 8.95E-50 | -1.69E-46 |
MS.gene052776 | MS.gene20985 | 0.805695 | 1.18E-49 | -1.69E-46 |
MS.gene053079 | MS.gene20985 | 0.836778 | 7.66E-57 | -1.69E-46 |
MS.gene053226 | MS.gene20985 | 0.821862 | 3.22E-53 | -1.69E-46 |
MS.gene053298 | MS.gene20985 | 0.809403 | 1.93E-50 | -1.69E-46 |
MS.gene05350 | MS.gene20985 | 0.807013 | 6.22E-50 | -1.69E-46 |
MS.gene053726 | MS.gene20985 | 0.807865 | 4.10E-50 | -1.69E-46 |
MS.gene053786 | MS.gene20985 | 0.803047 | 4.20E-49 | -1.69E-46 |
MS.gene054178 | MS.gene20985 | 0.818814 | 1.61E-52 | -1.69E-46 |
MS.gene054479 | MS.gene20985 | 0.822085 | 2.86E-53 | -1.69E-46 |
MS.gene05458 | MS.gene20985 | 0.835308 | 1.81E-56 | -1.69E-46 |
MS.gene054892 | MS.gene20985 | 0.825392 | 4.81E-54 | -1.69E-46 |
MS.gene054893 | MS.gene20985 | 0.830014 | 3.73E-55 | -1.69E-46 |
MS.gene05517 | MS.gene20985 | 0.836852 | 7.34E-57 | -1.69E-46 |
MS.gene055313 | MS.gene20985 | 0.800081 | 1.70E-48 | -1.69E-46 |
MS.gene055513 | MS.gene20985 | 0.875396 | 3.18E-68 | -1.69E-46 |
MS.gene05552 | MS.gene20985 | 0.804766 | 1.85E-49 | -1.69E-46 |
MS.gene055864 | MS.gene20985 | 0.849193 | 3.78E-60 | -1.69E-46 |
MS.gene056045 | MS.gene20985 | 0.831951 | 1.25E-55 | -1.69E-46 |
MS.gene056174 | MS.gene20985 | 0.806147 | 9.47E-50 | -1.69E-46 |
MS.gene056181 | MS.gene20985 | 0.868867 | 4.75E-66 | -1.69E-46 |
MS.gene056308 | MS.gene20985 | 0.810378 | 1.19E-50 | -1.69E-46 |
MS.gene056390 | MS.gene20985 | 0.8051 | 1.57E-49 | -1.69E-46 |
MS.gene056509 | MS.gene20985 | 0.821144 | 4.72E-53 | -1.69E-46 |
MS.gene056699 | MS.gene20985 | 0.820667 | 6.08E-53 | -1.69E-46 |
MS.gene056776 | MS.gene20985 | 0.813569 | 2.39E-51 | -1.69E-46 |
MS.gene056787 | MS.gene20985 | 0.804928 | 1.71E-49 | -1.69E-46 |
MS.gene056831 | MS.gene20985 | 0.838426 | 2.90E-57 | -1.69E-46 |
MS.gene05686 | MS.gene20985 | 0.804499 | 2.10E-49 | -1.69E-46 |
MS.gene057034 | MS.gene20985 | 0.824677 | 7.09E-54 | -1.69E-46 |
MS.gene057102 | MS.gene20985 | 0.811483 | 6.85E-51 | -1.69E-46 |
MS.gene057155 | MS.gene20985 | 0.822574 | 2.20E-53 | -1.69E-46 |
MS.gene057208 | MS.gene20985 | 0.813753 | 2.18E-51 | -1.69E-46 |
MS.gene057890 | MS.gene20985 | -0.813312 | 2.73E-51 | -1.69E-46 |
MS.gene057919 | MS.gene20985 | 0.801193 | 1.01E-48 | -1.69E-46 |
MS.gene058081 | MS.gene20985 | 0.815534 | 8.80E-52 | -1.69E-46 |
MS.gene058159 | MS.gene20985 | 0.814805 | 1.28E-51 | -1.69E-46 |
MS.gene058279 | MS.gene20985 | 0.803611 | 3.21E-49 | -1.69E-46 |
MS.gene058429 | MS.gene20985 | 0.801358 | 9.35E-49 | -1.69E-46 |
MS.gene059144 | MS.gene20985 | 0.80425 | 2.36E-49 | -1.69E-46 |
MS.gene059170 | MS.gene20985 | 0.827146 | 1.84E-54 | -1.69E-46 |
MS.gene059283 | MS.gene20985 | 0.816335 | 5.83E-52 | -1.69E-46 |
MS.gene059842 | MS.gene20985 | 0.800263 | 1.56E-48 | -1.69E-46 |
MS.gene05985 | MS.gene20985 | -0.803334 | 3.66E-49 | -1.69E-46 |
MS.gene059965 | MS.gene20985 | 0.822567 | 2.21E-53 | -1.69E-46 |
MS.gene060259 | MS.gene20985 | 0.803056 | 4.18E-49 | -1.69E-46 |
MS.gene060296 | MS.gene20985 | 0.816691 | 4.85E-52 | -1.69E-46 |
MS.gene060435 | MS.gene20985 | 0.854612 | 1.10E-61 | -1.69E-46 |
MS.gene06052 | MS.gene20985 | 0.827862 | 1.24E-54 | -1.69E-46 |
MS.gene060777 | MS.gene20985 | 0.806783 | 6.96E-50 | -1.69E-46 |
MS.gene060851 | MS.gene20985 | 0.802649 | 5.07E-49 | -1.69E-46 |
MS.gene060852 | MS.gene20985 | 0.800263 | 1.56E-48 | -1.69E-46 |
MS.gene060932 | MS.gene20985 | 0.849969 | 2.30E-60 | -1.69E-46 |
MS.gene060933 | MS.gene20985 | 0.820945 | 5.24E-53 | -1.69E-46 |
MS.gene060935 | MS.gene20985 | 0.818778 | 1.64E-52 | -1.69E-46 |
MS.gene060937 | MS.gene20985 | 0.831656 | 1.48E-55 | -1.69E-46 |
MS.gene061100 | MS.gene20985 | 0.863971 | 1.70E-64 | -1.69E-46 |
MS.gene061160 | MS.gene20985 | 0.800134 | 1.66E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene74542 | MS.gene20985 | PPI |
MS.gene40748 | MS.gene20985 | PPI |
MS.gene20985 | MS.gene03069 | PPI |
MS.gene02100 | MS.gene20985 | PPI |
MS.gene20985 | MS.gene003302 | PPI |
MS.gene27907 | MS.gene20985 | PPI |
MS.gene20985 | MS.gene47863 | PPI |
MS.gene058821 | MS.gene20985 | PPI |
MS.gene20985 | MS.gene005346 | PPI |
MS.gene21056 | MS.gene20985 | PPI |
MS.gene005346 | MS.gene20985 | PPI |
MS.gene20985 | MS.gene058831 | PPI |
MS.gene20985 | MS.gene023667 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20985.t1 | MTR_1g484830 | 97.626 | 337 | 8 | 0 | 1 | 337 | 1 | 337 | 0.0 | 652 |
MS.gene20985.t1 | MTR_7g012670 | 75.000 | 56 | 12 | 1 | 136 | 191 | 2 | 55 | 8.39e-18 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20985.t1 | AT5G26770 | 70.270 | 333 | 94 | 2 | 7 | 337 | 6 | 335 | 2.54e-164 | 462 |
MS.gene20985.t1 | AT5G26770 | 70.270 | 333 | 94 | 2 | 7 | 337 | 6 | 335 | 2.54e-164 | 462 |
MS.gene20985.t1 | AT5G26770 | 65.730 | 356 | 94 | 3 | 7 | 337 | 6 | 358 | 6.96e-159 | 449 |
MS.gene20985.t1 | AT5G26770 | 65.730 | 356 | 94 | 3 | 7 | 337 | 6 | 358 | 6.96e-159 | 449 |
MS.gene20985.t1 | AT5G26770 | 64.264 | 333 | 94 | 3 | 7 | 337 | 6 | 315 | 1.46e-144 | 411 |
MS.gene20985.t1 | AT1G09470 | 61.468 | 327 | 125 | 1 | 11 | 337 | 11 | 336 | 1.88e-136 | 391 |
MS.gene20985.t1 | AT5G26770 | 69.643 | 280 | 85 | 0 | 7 | 286 | 6 | 285 | 1.12e-134 | 385 |
MS.gene20985.t1 | AT3G05830 | 63.018 | 338 | 122 | 3 | 1 | 337 | 1 | 336 | 1.51e-132 | 381 |
MS.gene20985.t1 | AT3G05830 | 63.018 | 338 | 122 | 3 | 1 | 337 | 1 | 336 | 1.51e-132 | 381 |
MS.gene20985.t1 | AT1G09470 | 60.245 | 327 | 128 | 2 | 11 | 337 | 11 | 335 | 8.95e-130 | 374 |
MS.gene20985.t1 | AT1G09470 | 60.245 | 327 | 128 | 2 | 11 | 337 | 11 | 335 | 8.95e-130 | 374 |
MS.gene20985.t1 | AT3G05830 | 60.684 | 351 | 122 | 4 | 1 | 337 | 1 | 349 | 5.59e-129 | 372 |
MS.gene20985.t1 | AT1G09483 | 67.925 | 106 | 32 | 2 | 233 | 337 | 1 | 105 | 2.30e-42 | 142 |
Find 56 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAGTTGATCCTTTGTTAA+AGG | 0.155858 | 1.3:-60149391 | MS.gene20985:CDS |
AAAAGCAAAATCAGAATTTC+TGG | 0.195429 | 1.3:-60146445 | MS.gene20985:CDS |
TAGAATTGAGCGTGATATTA+TGG | 0.255210 | 1.3:-60147268 | MS.gene20985:CDS |
TTCATCTTCTCTATATTCTT+AGG | 0.270281 | 1.3:+60147180 | None:intergenic |
TTGTGAACTGCGAAAATTAT+TGG | 0.291074 | 1.3:-60147214 | MS.gene20985:CDS |
TGGTAAATTGCAGAAGAAAT+TGG | 0.293833 | 1.3:-60148998 | MS.gene20985:CDS |
GTCTTTAGCTTCTGAGTTGA+AGG | 0.308444 | 1.3:-60149328 | MS.gene20985:CDS |
AAGATTATGGAAATGGAAAT+TGG | 0.308528 | 1.3:-60149018 | MS.gene20985:CDS |
AGAGACAAATGCAAAGATTA+TGG | 0.320596 | 1.3:-60149031 | MS.gene20985:CDS |
AAATGCAAAGATTATGGAAA+TGG | 0.386311 | 1.3:-60149025 | MS.gene20985:CDS |
CAGAATTTCTGGGACACCTC+TGG | 0.394928 | 1.3:-60146434 | MS.gene20985:CDS |
AATATTGATTCAGCACATAA+AGG | 0.405506 | 1.3:-60147529 | MS.gene20985:intron |
TAATTTACAGAAGGATCTTA+AGG | 0.405711 | 1.3:-60147331 | MS.gene20985:CDS |
ATGGAGGCTCTCGCAAAATC+CGG | 0.409252 | 1.3:-60147249 | MS.gene20985:CDS |
GAAACAACGACGTGCTGATC+AGG | 0.420227 | 1.3:-60146931 | MS.gene20985:CDS |
GAAGGAGCTTCGAAGTCGTT+TGG | 0.422346 | 1.3:-60149310 | MS.gene20985:CDS |
GAATAAGCTACTGGTTGTTA+AGG | 0.427044 | 1.3:-60147160 | MS.gene20985:CDS |
GAAGAAGAGAGTGTTGAAGT+TGG | 0.430394 | 1.3:-60146904 | MS.gene20985:CDS |
TCGAAGTCGTTTGGCTTCGC+AGG | 0.437680 | 1.3:-60149301 | MS.gene20985:CDS |
TTAAGATCATGTCTGCTCAT+TGG | 0.439395 | 1.3:-60147107 | MS.gene20985:CDS |
CGCAAAATCCGGGGAGAACA+AGG | 0.444877 | 1.3:-60147238 | MS.gene20985:CDS |
ATCAACTGAAGCTTGTTTGT+CGG | 0.455999 | 1.3:+60149404 | None:intergenic |
AGTTAGAGTTTCTTTAACAT+AGG | 0.456089 | 1.3:+60149272 | None:intergenic |
CTCAGACGCGCAAACTTCAA+AGG | 0.472445 | 1.3:-60146857 | MS.gene20985:CDS |
GTCTATGTCCATGCTAGTCT+TGG | 0.474536 | 1.3:-60146396 | MS.gene20985:CDS |
TGATGAAATAGTTAGACTTA+AGG | 0.477477 | 1.3:-60147136 | MS.gene20985:CDS |
GACTAAGGAATTAGAATCAC+AGG | 0.477639 | 1.3:-60147076 | MS.gene20985:intron |
TTCAAACTCTTCTGCTGAGA+AGG | 0.479809 | 1.3:-60148950 | MS.gene20985:intron |
TGGAGGCTCTCGCAAAATCC+GGG | 0.485779 | 1.3:-60147248 | MS.gene20985:CDS |
CGAGCAGATGGGAGAGCGAC+GGG | 0.486908 | 1.3:-60146531 | MS.gene20985:intron |
TTCACAATCCTTGTTCTCCC+CGG | 0.489475 | 1.3:+60147230 | None:intergenic |
GAACTTAAAGATCAATTAGC+AGG | 0.491351 | 1.3:-60146494 | MS.gene20985:CDS |
AGGAAAGCAACAAACAGTTT+CGG | 0.509158 | 1.3:-60146474 | MS.gene20985:CDS |
GATTCAGCACATAAAGGAGT+TGG | 0.509544 | 1.3:-60147523 | MS.gene20985:intron |
TCATTCAAATCCTTTAACAA+AGG | 0.512856 | 1.3:+60149381 | None:intergenic |
TATGTCCATGCTAGTCTTGG+TGG | 0.514229 | 1.3:-60146393 | MS.gene20985:CDS |
ACTGCGAAAATTATTGGATG+AGG | 0.521280 | 1.3:-60147208 | MS.gene20985:CDS |
TCATTGGAAGCTCAAGACTA+AGG | 0.525004 | 1.3:-60147091 | MS.gene20985:CDS |
TAAAGAAACTCTAACTAGAC+AGG | 0.538869 | 1.3:-60149265 | MS.gene20985:intron |
AGAGAAGATGAATAAGCTAC+TGG | 0.539996 | 1.3:-60147169 | MS.gene20985:CDS |
AAAGCAAAATCAGAATTTCT+GGG | 0.542452 | 1.3:-60146444 | MS.gene20985:CDS |
ACAGAAGGATCTTAAGGCAA+GGG | 0.550488 | 1.3:-60147325 | MS.gene20985:CDS |
TACAGAAGGATCTTAAGGCA+AGG | 0.554800 | 1.3:-60147326 | MS.gene20985:CDS |
CTGCGCTGATTGAGCTGATG+CGG | 0.556870 | 1.3:+60147449 | None:intergenic |
TCAGACGCGCAAACTTCAAA+GGG | 0.558261 | 1.3:-60146856 | MS.gene20985:intron |
TTGTTTGTCGGAAATTGACA+TGG | 0.561919 | 1.3:+60149416 | None:intergenic |
GCAGCTTGATAATTTACAGA+AGG | 0.573568 | 1.3:-60147340 | MS.gene20985:CDS |
GAAGTTGGAATTCTGTCTGC+AGG | 0.579748 | 1.3:-60146889 | MS.gene20985:CDS |
TCGAGCAGATGGGAGAGCGA+CGG | 0.608995 | 1.3:-60146532 | MS.gene20985:intron |
TAGTTCTCTAAGAGAGCATG+AGG | 0.613433 | 1.3:-60147385 | MS.gene20985:CDS |
GAGGAACGCGTAATTAGACT+AGG | 0.621102 | 1.3:-60147366 | MS.gene20985:CDS |
AAATACCACCAAGACTAGCA+TGG | 0.627363 | 1.3:+60146388 | None:intergenic |
AATTGAGCGTGATATTATGG+AGG | 0.642028 | 1.3:-60147265 | MS.gene20985:CDS |
TGTTTGTCGGAAATTGACAT+GGG | 0.647558 | 1.3:+60149417 | None:intergenic |
GGAGGCTCTCGCAAAATCCG+GGG | 0.664732 | 1.3:-60147247 | MS.gene20985:CDS |
GCTCGTAATAGCTAGAGCAA+CGG | 0.671851 | 1.3:-60147484 | MS.gene20985:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATAATAACAAAAAGTTT+AGG | - | chr1.3:60147213-60147232 | MS.gene20985:CDS | 10.0% |
!! | TATAAAAGAAAAAAGGTAAT+AGG | + | chr1.3:60147196-60147215 | None:intergenic | 15.0% |
!!! | AAATTTTTGTATCAGTTTTA+CGG | - | chr1.3:60147570-60147589 | MS.gene20985:intron | 15.0% |
!!! | AATTATTTGACCATTTTTTT+GGG | - | chr1.3:60149067-60149086 | MS.gene20985:intron | 15.0% |
!!! | TTAATTCTTCAATTTTTTCT+AGG | - | chr1.3:60147436-60147455 | MS.gene20985:CDS | 15.0% |
!! | AATCCATCAATAAACTTAAA+TGG | + | chr1.3:60148823-60148842 | None:intergenic | 20.0% |
!! | ACATAGTTTACTTAACAATA+AGG | - | chr1.3:60147300-60147319 | MS.gene20985:CDS | 20.0% |
!! | ACTTATAAGATATGATGTAT+AGG | + | chr1.3:60147938-60147957 | None:intergenic | 20.0% |
!! | ATGATAAAAAACAAAGCTTT+CGG | - | chr1.3:60146428-60146447 | MS.gene20985:CDS | 20.0% |
!! | TTTAAAGGTTAATGCATAAT+TGG | + | chr1.3:60148004-60148023 | None:intergenic | 20.0% |
!!! | AAATTAATTTTAATGTAGGG+AGG | - | chr1.3:60147507-60147526 | MS.gene20985:CDS | 20.0% |
!!! | AAGTTACAATTTTTTTAGCA+TGG | + | chr1.3:60146628-60146647 | None:intergenic | 20.0% |
!!! | AATCCATTTAAGTTTATTGA+TGG | - | chr1.3:60148817-60148836 | MS.gene20985:intron | 20.0% |
!!! | GAATTATTTGACCATTTTTT+TGG | - | chr1.3:60149066-60149085 | MS.gene20985:intron | 20.0% |
!!! | TTATACAAGTTTTCATTGAT+GGG | - | chr1.3:60149136-60149155 | MS.gene20985:intron | 20.0% |
!!! | TTATGGATTATATTTTTCAC+AGG | - | chr1.3:60146732-60146751 | MS.gene20985:intron | 20.0% |
!!! | TTTTTCTTCATTAAGGAATA+AGG | + | chr1.3:60148089-60148108 | None:intergenic | 20.0% |
!!! | TTTTTTAGTACTGCAATTTA+TGG | - | chr1.3:60146715-60146734 | MS.gene20985:intron | 20.0% |
! | AAAAGCAAAATCAGAATTTC+TGG | - | chr1.3:60149345-60149364 | MS.gene20985:CDS | 25.0% |
! | AAAGCAAAATCAGAATTTCT+GGG | - | chr1.3:60149346-60149365 | MS.gene20985:CDS | 25.0% |
! | AAATGCAAAGATTATGGAAA+TGG | - | chr1.3:60146765-60146784 | MS.gene20985:intron | 25.0% |
! | AACCACGAAAAGAAATAATA+AGG | + | chr1.3:60146886-60146905 | None:intergenic | 25.0% |
! | AAGATTATGGAAATGGAAAT+TGG | - | chr1.3:60146772-60146791 | MS.gene20985:intron | 25.0% |
! | AATTAACATCCTAGTTAGAA+AGG | + | chr1.3:60147422-60147441 | None:intergenic | 25.0% |
! | AATTCAGTTCATATCTACAA+GGG | + | chr1.3:60147358-60147377 | None:intergenic | 25.0% |
! | AGTAACAAGATCCTAAAAAA+TGG | + | chr1.3:60147103-60147122 | None:intergenic | 25.0% |
! | AGTTAGAGTTTCTTTAACAT+AGG | + | chr1.3:60146521-60146540 | None:intergenic | 25.0% |
! | ATATGAACGAGTAATAACAA+GGG | + | chr1.3:60148760-60148779 | None:intergenic | 25.0% |
! | ATTAACATCCTAGTTAGAAA+GGG | + | chr1.3:60147421-60147440 | None:intergenic | 25.0% |
! | ATTACTCGTTCATATACTTA+GGG | - | chr1.3:60148765-60148784 | MS.gene20985:intron | 25.0% |
! | ATTCTTTGTAACTAAAGTCT+CGG | - | chr1.3:60148214-60148233 | MS.gene20985:intron | 25.0% |
! | CTAGAGTACAATCTATTTAA+AGG | + | chr1.3:60148019-60148038 | None:intergenic | 25.0% |
! | GATAAGAAACACTACAAATA+AGG | - | chr1.3:60149108-60149127 | MS.gene20985:intron | 25.0% |
! | GTAACAAGATCCTAAAAAAT+GGG | + | chr1.3:60147102-60147121 | None:intergenic | 25.0% |
! | TAAATTCTTGCCCAAAAAAA+TGG | + | chr1.3:60149080-60149099 | None:intergenic | 25.0% |
! | TAATTTACAGAAGGATCTTA+AGG | - | chr1.3:60148459-60148478 | MS.gene20985:intron | 25.0% |
! | TATATGAACGAGTAATAACA+AGG | + | chr1.3:60148761-60148780 | None:intergenic | 25.0% |
! | TATTACTCGTTCATATACTT+AGG | - | chr1.3:60148764-60148783 | MS.gene20985:intron | 25.0% |
! | TCATTCAAATCCTTTAACAA+AGG | + | chr1.3:60146412-60146431 | None:intergenic | 25.0% |
! | TGATGAAATAGTTAGACTTA+AGG | - | chr1.3:60148654-60148673 | MS.gene20985:intron | 25.0% |
! | TTCATCTTCTCTATATTCTT+AGG | + | chr1.3:60148613-60148632 | None:intergenic | 25.0% |
!! | AGTATCAATCATTCTACTTT+TGG | - | chr1.3:60146655-60146674 | MS.gene20985:intron | 25.0% |
!! | CTTATACAAGTTTTCATTGA+TGG | - | chr1.3:60149135-60149154 | MS.gene20985:intron | 25.0% |
!! | TGTCATCTTTTTCTTCATTA+AGG | + | chr1.3:60148096-60148115 | None:intergenic | 25.0% |
!!! | AAACTTAAATGGATTAGCTA+TGG | + | chr1.3:60148812-60148831 | None:intergenic | 25.0% |
!!! | AATATTGATTCAGCACATAA+AGG | - | chr1.3:60148261-60148280 | MS.gene20985:intron | 25.0% |
!!! | ATAATTTTTCTAGCCAGTAA+TGG | - | chr1.3:60147854-60147873 | MS.gene20985:intron | 25.0% |
!!! | ATTAGTCTTAAGACTTTCTT+TGG | + | chr1.3:60147259-60147278 | None:intergenic | 25.0% |
!!! | GAAATTCTGATTTTGCTTTT+CGG | + | chr1.3:60149345-60149364 | None:intergenic | 25.0% |
!!! | TACCTTATTATTTCTTTTCG+TGG | - | chr1.3:60146881-60146900 | MS.gene20985:CDS | 25.0% |
!!! | TTGTTCTGTTTTTCTCTTTT+TGG | - | chr1.3:60146602-60146621 | MS.gene20985:intron | 25.0% |
AACAAAAAGTTTAGGTGAGA+TGG | - | chr1.3:60147221-60147240 | MS.gene20985:CDS | 30.0% | |
AGAGACAAATGCAAAGATTA+TGG | - | chr1.3:60146759-60146778 | MS.gene20985:intron | 30.0% | |
AGGAAATGCTTAAATGTTTG+TGG | - | chr1.3:60148997-60149016 | MS.gene20985:CDS | 30.0% | |
ATAAGTGACTTCAATAGTGA+AGG | + | chr1.3:60147781-60147800 | None:intergenic | 30.0% | |
ATCACGTGAGTATATTCAAT+AGG | - | chr1.3:60147823-60147842 | MS.gene20985:intron | 30.0% | |
CTTCGAACTTCAAAAAGAAT+TGG | - | chr1.3:60148372-60148391 | MS.gene20985:intron | 30.0% | |
GAACTTAAAGATCAATTAGC+AGG | - | chr1.3:60149296-60149315 | MS.gene20985:CDS | 30.0% | |
GAATTCAGTTCATATCTACA+AGG | + | chr1.3:60147359-60147378 | None:intergenic | 30.0% | |
GGGTCATTTGAATATACAAT+TGG | + | chr1.3:60147634-60147653 | None:intergenic | 30.0% | |
TAAAGAAACTCTAACTAGAC+AGG | - | chr1.3:60146525-60146544 | MS.gene20985:CDS | 30.0% | |
TAAGGTCTTTACATTAGTAG+CGG | - | chr1.3:60147318-60147337 | MS.gene20985:CDS | 30.0% | |
TAGAATTGAGCGTGATATTA+TGG | - | chr1.3:60148522-60148541 | MS.gene20985:intron | 30.0% | |
TCACGTGAGTATATTCAATA+GGG | - | chr1.3:60147824-60147843 | MS.gene20985:intron | 30.0% | |
TCACTTATTGTACTGCAATA+TGG | - | chr1.3:60147793-60147812 | MS.gene20985:intron | 30.0% | |
TCATTACTTCATCGATAACT+TGG | + | chr1.3:60147969-60147988 | None:intergenic | 30.0% | |
TGGTAAATTGCAGAAGAAAT+TGG | - | chr1.3:60146792-60146811 | MS.gene20985:intron | 30.0% | |
TGTGGTAATTCAGAAAAATG+TGG | + | chr1.3:60147462-60147481 | None:intergenic | 30.0% | |
TTATTGTACTGCAATATGGA+AGG | - | chr1.3:60147797-60147816 | MS.gene20985:intron | 30.0% | |
TTCAGTTGATCCTTTGTTAA+AGG | - | chr1.3:60146399-60146418 | MS.gene20985:CDS | 30.0% | |
TTGTGAACTGCGAAAATTAT+TGG | - | chr1.3:60148576-60148595 | MS.gene20985:intron | 30.0% | |
TTTAATGTAGGGAGGAAATT+GGG | - | chr1.3:60147515-60147534 | MS.gene20985:CDS | 30.0% | |
! | AGTGATTTTCCAACTTAGAA+TGG | + | chr1.3:60147547-60147566 | None:intergenic | 30.0% |
! | ATAAGAGAGTTTTCCAACAA+TGG | + | chr1.3:60147389-60147408 | None:intergenic | 30.0% |
! | TCGATGAAGTAATGAACTTT+TGG | - | chr1.3:60147974-60147993 | MS.gene20985:intron | 30.0% |
! | TGATTTCACTAAGTTGACTA+AGG | + | chr1.3:60149217-60149236 | None:intergenic | 30.0% |
! | TTTTAATGTAGGGAGGAAAT+TGG | - | chr1.3:60147514-60147533 | MS.gene20985:CDS | 30.0% |
!! | ATCTAATGCAGTTTTGGTAA+TGG | + | chr1.3:60148130-60148149 | None:intergenic | 30.0% |
!! | GGCTTTCTTTTCTTTATTTG+AGG | - | chr1.3:60148786-60148805 | MS.gene20985:intron | 30.0% |
!! | TTCATTTTAGCATATCCCAT+TGG | - | chr1.3:60147138-60147157 | MS.gene20985:CDS | 30.0% |
!! | TTGATTTGGTAATAAGCTTG+TGG | + | chr1.3:60147480-60147499 | None:intergenic | 30.0% |
!!! | CTGTTATAGATCTGCTTTTT+GGG | - | chr1.3:60149035-60149054 | MS.gene20985:CDS | 30.0% |
AAGAATTCTAGCAGCATCTA+TGG | + | chr1.3:60147747-60147766 | None:intergenic | 35.0% | |
AATTGAGCGTGATATTATGG+AGG | - | chr1.3:60148525-60148544 | MS.gene20985:intron | 35.0% | |
ACTGCGAAAATTATTGGATG+AGG | - | chr1.3:60148582-60148601 | MS.gene20985:intron | 35.0% | |
AGAAAAAAATGAGCAGCTTC+AGG | - | chr1.3:60146816-60146835 | MS.gene20985:intron | 35.0% | |
AGAAGGTTGAGTAGATACTT+TGG | - | chr1.3:60147170-60147189 | MS.gene20985:CDS | 35.0% | |
AGAGAAGATGAATAAGCTAC+TGG | - | chr1.3:60148621-60148640 | MS.gene20985:intron | 35.0% | |
AGGAAAGCAACAAACAGTTT+CGG | - | chr1.3:60149316-60149335 | MS.gene20985:CDS | 35.0% | |
CGTGGTTTATGAATATCTCT+TGG | - | chr1.3:60146899-60146918 | MS.gene20985:CDS | 35.0% | |
CTATGTACATAATGTTCCGT+TGG | + | chr1.3:60148173-60148192 | None:intergenic | 35.0% | |
GAATCGTGCAAAACAAAAAG+TGG | + | chr1.3:60146962-60146981 | None:intergenic | 35.0% | |
GAATTCTTATCGACCATTGT+TGG | - | chr1.3:60147373-60147392 | MS.gene20985:CDS | 35.0% | |
GACTAAGGAATTAGAATCAC+AGG | - | chr1.3:60148714-60148733 | MS.gene20985:intron | 35.0% | |
GAGTATATTCAATAGGGACT+GGG | - | chr1.3:60147830-60147849 | MS.gene20985:intron | 35.0% | |
GGAAAACTCTCTTATTCTTG+TGG | - | chr1.3:60147394-60147413 | MS.gene20985:CDS | 35.0% | |
GGGATATGCTAAAATGAAAG+AGG | + | chr1.3:60147136-60147155 | None:intergenic | 35.0% | |
GTTTGTGGTTACAGTGAATT+GGG | - | chr1.3:60149012-60149031 | MS.gene20985:CDS | 35.0% | |
TAATAACAAGGGCAAAGATC+AGG | + | chr1.3:60148749-60148768 | None:intergenic | 35.0% | |
TGAGTATATTCAATAGGGAC+TGG | - | chr1.3:60147829-60147848 | MS.gene20985:intron | 35.0% | |
TGTTTGTGGTTACAGTGAAT+TGG | - | chr1.3:60149011-60149030 | MS.gene20985:CDS | 35.0% | |
TTAAGATCATGTCTGCTCAT+TGG | - | chr1.3:60148683-60148702 | MS.gene20985:intron | 35.0% | |
! | ATCAACTGAAGCTTGTTTGT+CGG | + | chr1.3:60146389-60146408 | None:intergenic | 35.0% |
! | CATCACAATTTTGAATCCAG+AGG | + | chr1.3:60149375-60149394 | None:intergenic | 35.0% |
! | GAATAAGCTACTGGTTGTTA+AGG | - | chr1.3:60148630-60148649 | MS.gene20985:intron | 35.0% |
! | GATGGATTTCAAAACACAGT+TGG | - | chr1.3:60148835-60148854 | MS.gene20985:intron | 35.0% |
! | GCAGCTTGATAATTTACAGA+AGG | - | chr1.3:60148450-60148469 | MS.gene20985:intron | 35.0% |
! | GTCAGAATCTAATGCAGTTT+TGG | + | chr1.3:60148136-60148155 | None:intergenic | 35.0% |
!! | GCTGTTATAGATCTGCTTTT+TGG | - | chr1.3:60149034-60149053 | MS.gene20985:CDS | 35.0% |
!! | TCTTGGTGGTATTTTCAAAG+CGG | - | chr1.3:60149411-60149430 | MS.gene20985:CDS | 35.0% |
!! | TTTTCATTGATGGGCATGAT+TGG | - | chr1.3:60149145-60149164 | MS.gene20985:intron | 35.0% |
!!! | ACACTAGATGCCCATTTTTT+AGG | - | chr1.3:60147089-60147108 | MS.gene20985:CDS | 35.0% |
!!! | CTTTTTGAAGTTCGAAGCAT+TGG | + | chr1.3:60148369-60148388 | None:intergenic | 35.0% |
!!! | GCACTCATTTTGTGTCATTT+AGG | - | chr1.3:60148977-60148996 | MS.gene20985:CDS | 35.0% |
!!! | GTTTGCTTTTCTAGCTGAAA+TGG | - | chr1.3:60147001-60147020 | MS.gene20985:intron | 35.0% |
!!! | TTCTACTTTTGGAGTCTTTG+TGG | - | chr1.3:60146666-60146685 | MS.gene20985:intron | 35.0% |
AAATACCACCAAGACTAGCA+TGG | + | chr1.3:60149405-60149424 | None:intergenic | 40.0% | |
ACAGAAGGATCTTAAGGCAA+GGG | - | chr1.3:60148465-60148484 | MS.gene20985:intron | 40.0% | |
GACTAAGGATGTTCAGATGA+TGG | + | chr1.3:60149202-60149221 | None:intergenic | 40.0% | |
GACTTTCTTTGGCCAAGTAA+AGG | + | chr1.3:60147248-60147267 | None:intergenic | 40.0% | |
GATAAGATCCTCTCCATTAC+TGG | + | chr1.3:60147870-60147889 | None:intergenic | 40.0% | |
GATTCAGCACATAAAGGAGT+TGG | - | chr1.3:60148267-60148286 | MS.gene20985:intron | 40.0% | |
TACAGAAGGATCTTAAGGCA+AGG | - | chr1.3:60148464-60148483 | MS.gene20985:intron | 40.0% | |
TAGCAGCATCTATGGCAATT+GGG | + | chr1.3:60147739-60147758 | None:intergenic | 40.0% | |
TCATTGGAAGCTCAAGACTA+AGG | - | chr1.3:60148699-60148718 | MS.gene20985:intron | 40.0% | |
TGCAAATATGGGCACAACAT+AGG | + | chr1.3:60147708-60147727 | None:intergenic | 40.0% | |
TTCAAACTCTTCTGCTGAGA+AGG | - | chr1.3:60146840-60146859 | MS.gene20985:intron | 40.0% | |
! | ACTAGTTCTCTGTTGACCAA+CGG | - | chr1.3:60148154-60148173 | MS.gene20985:intron | 40.0% |
! | GTCTTTAGCTTCTGAGTTGA+AGG | - | chr1.3:60146462-60146481 | MS.gene20985:CDS | 40.0% |
! | TAGTTCTCTAAGAGAGCATG+AGG | - | chr1.3:60148405-60148424 | MS.gene20985:intron | 40.0% |
! | TTTGGAGTCTTTGTGGTTGT+GGG | - | chr1.3:60146673-60146692 | MS.gene20985:intron | 40.0% |
!! | GAAGAAGAGAGTGTTGAAGT+TGG | - | chr1.3:60148886-60148905 | MS.gene20985:intron | 40.0% |
!! | GTATGTGTTTTCGAGCAGAT+GGG | - | chr1.3:60149248-60149267 | MS.gene20985:intron | 40.0% |
!! | TAGCATATCCCATTGGTCTT+TGG | - | chr1.3:60147145-60147164 | MS.gene20985:CDS | 40.0% |
!! | TGTATGTGTTTTCGAGCAGA+TGG | - | chr1.3:60149247-60149266 | MS.gene20985:intron | 40.0% |
!! | TTTTCTAGCCAGTAATGGAG+AGG | - | chr1.3:60147859-60147878 | MS.gene20985:intron | 40.0% |
!!! | TTTTGGAGTCTTTGTGGTTG+TGG | - | chr1.3:60146672-60146691 | MS.gene20985:intron | 40.0% |
AAACTACCAACGCTCTAGCA+CGG | + | chr1.3:60147660-60147679 | None:intergenic | 45.0% | |
ACCTTCTCACCAAAGACCAA+TGG | + | chr1.3:60147157-60147176 | None:intergenic | 45.0% | |
AGGTGAGATGGACCTTTACT+TGG | - | chr1.3:60147233-60147252 | MS.gene20985:CDS | 45.0% | |
CCTTCTCACCAAAGACCAAT+GGG | + | chr1.3:60147156-60147175 | None:intergenic | 45.0% | |
CTAGCAGCATCTATGGCAAT+TGG | + | chr1.3:60147740-60147759 | None:intergenic | 45.0% | |
CTTGTGGTCCCTTTCTAACT+AGG | - | chr1.3:60147410-60147429 | MS.gene20985:CDS | 45.0% | |
GAAGTTGGAATTCTGTCTGC+AGG | - | chr1.3:60148901-60148920 | MS.gene20985:intron | 45.0% | |
GAGGAACGCGTAATTAGACT+AGG | - | chr1.3:60148424-60148443 | MS.gene20985:intron | 45.0% | |
GCTCGTAATAGCTAGAGCAA+CGG | - | chr1.3:60148306-60148325 | MS.gene20985:intron | 45.0% | |
GGGTAGCATGGTGCAAATAT+GGG | + | chr1.3:60147719-60147738 | None:intergenic | 45.0% | |
TCAGACGCGCAAACTTCAAA+GGG | - | chr1.3:60148934-60148953 | MS.gene20985:intron | 45.0% | |
TCTATGGCAATTGGGTAGCA+TGG | + | chr1.3:60147731-60147750 | None:intergenic | 45.0% | |
TGGGTAGCATGGTGCAAATA+TGG | + | chr1.3:60147720-60147739 | None:intergenic | 45.0% | |
TGTAGGGAGGAAATTGGGAT+TGG | - | chr1.3:60147520-60147539 | MS.gene20985:intron | 45.0% | |
TTCACAATCCTTGTTCTCCC+CGG | + | chr1.3:60148563-60148582 | None:intergenic | 45.0% | |
TTGGAGTCTTTGTGGTTGTG+GGG | - | chr1.3:60146674-60146693 | MS.gene20985:intron | 45.0% | |
! | GTCTATGTCCATGCTAGTCT+TGG | - | chr1.3:60149394-60149413 | MS.gene20985:CDS | 45.0% |
!! | GGGATTGGTCCATTCTAAGT+TGG | - | chr1.3:60147535-60147554 | MS.gene20985:intron | 45.0% |
!! | TATGTCCATGCTAGTCTTGG+TGG | - | chr1.3:60149397-60149416 | MS.gene20985:CDS | 45.0% |
!! | TTATTATTATAAAAGAAAAA+AGG | + | chr1.3:60147203-60147222 | None:intergenic | 5.0% |
!!! | ATTAAAATTAATTTTAATGT+AGG | - | chr1.3:60147503-60147522 | MS.gene20985:CDS | 5.0% |
!!! | TTAAAATTAATTTTAATGTA+GGG | - | chr1.3:60147504-60147523 | MS.gene20985:CDS | 5.0% |
!!! | TTAATTTTAATTTTTTGATT+TGG | + | chr1.3:60147494-60147513 | None:intergenic | 5.0% |
AACTACCAACGCTCTAGCAC+GGG | + | chr1.3:60147659-60147678 | None:intergenic | 50.0% | |
ATGGAGGCTCTCGCAAAATC+CGG | - | chr1.3:60148541-60148560 | MS.gene20985:intron | 50.0% | |
CTCAGACGCGCAAACTTCAA+AGG | - | chr1.3:60148933-60148952 | MS.gene20985:intron | 50.0% | |
GAAGGAGCTTCGAAGTCGTT+TGG | - | chr1.3:60146480-60146499 | MS.gene20985:CDS | 50.0% | |
TCTTTGTGGTTGTGGGGTCA+AGG | - | chr1.3:60146680-60146699 | MS.gene20985:intron | 50.0% | |
! | GAAACAACGACGTGCTGATC+AGG | - | chr1.3:60148859-60148878 | MS.gene20985:intron | 50.0% |
!! | CAGAATTTCTGGGACACCTC+TGG | - | chr1.3:60149356-60149375 | MS.gene20985:CDS | 50.0% |
!! | CCCATTGGTCTTTGGTGAGA+AGG | - | chr1.3:60147153-60147172 | MS.gene20985:CDS | 50.0% |
CGCAAAATCCGGGGAGAACA+AGG | - | chr1.3:60148552-60148571 | MS.gene20985:intron | 55.0% | |
TGGAGGCTCTCGCAAAATCC+GGG | - | chr1.3:60148542-60148561 | MS.gene20985:intron | 55.0% | |
! | TCGAAGTCGTTTGGCTTCGC+AGG | - | chr1.3:60146489-60146508 | MS.gene20985:CDS | 55.0% |
!! | CTGCGCTGATTGAGCTGATG+CGG | + | chr1.3:60148344-60148363 | None:intergenic | 55.0% |
ACCAACGCTCTAGCACGGGA+AGG | + | chr1.3:60147655-60147674 | None:intergenic | 60.0% | |
CCAACGCTCTAGCACGGGAA+GGG | + | chr1.3:60147654-60147673 | None:intergenic | 60.0% | |
GGAGGCTCTCGCAAAATCCG+GGG | - | chr1.3:60148543-60148562 | MS.gene20985:intron | 60.0% | |
TCGAGCAGATGGGAGAGCGA+CGG | - | chr1.3:60149258-60149277 | MS.gene20985:intron | 60.0% | |
CCCTTCCCGTGCTAGAGCGT+TGG | - | chr1.3:60147651-60147670 | MS.gene20985:intron | 65.0% | |
CGAGCAGATGGGAGAGCGAC+GGG | - | chr1.3:60149259-60149278 | MS.gene20985:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 60146376 | 60149436 | 60146376 | ID=MS.gene20985 |
chr1.3 | mRNA | 60146376 | 60149436 | 60146376 | ID=MS.gene20985.t1;Parent=MS.gene20985 |
chr1.3 | exon | 60149266 | 60149436 | 60149266 | ID=MS.gene20985.t1.exon1;Parent=MS.gene20985.t1 |
chr1.3 | CDS | 60149266 | 60149436 | 60149266 | ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1 |
chr1.3 | exon | 60148951 | 60149058 | 60148951 | ID=MS.gene20985.t1.exon2;Parent=MS.gene20985.t1 |
chr1.3 | CDS | 60148951 | 60149058 | 60148951 | ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1 |
chr1.3 | exon | 60147077 | 60147538 | 60147077 | ID=MS.gene20985.t1.exon3;Parent=MS.gene20985.t1 |
chr1.3 | CDS | 60147077 | 60147538 | 60147077 | ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1 |
chr1.3 | exon | 60146857 | 60146958 | 60146857 | ID=MS.gene20985.t1.exon4;Parent=MS.gene20985.t1 |
chr1.3 | CDS | 60146857 | 60146958 | 60146857 | ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1 |
chr1.3 | exon | 60146376 | 60146546 | 60146376 | ID=MS.gene20985.t1.exon5;Parent=MS.gene20985.t1 |
chr1.3 | CDS | 60146376 | 60146546 | 60146376 | ID=cds.MS.gene20985.t1;Parent=MS.gene20985.t1 |
Gene Sequence |
Protein sequence |