Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40748.t1 | XP_013469086.1 | 93.5 | 337 | 22 | 0 | 1 | 337 | 1 | 337 | 2.40E-87 | 332.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40748.t1 | F4K1B4 | 70.4 | 331 | 97 | 1 | 7 | 337 | 6 | 335 | 1.7e-60 | 234.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40748.t1 | A0A072VM81 | 93.5 | 337 | 22 | 0 | 1 | 337 | 1 | 337 | 1.7e-87 | 332.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene40748 | 0.828156 | 1.05E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene40748 | 0.807576 | 4.73E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene40748 | 0.836417 | 9.48E-57 | -1.69E-46 |
| MS.gene049368 | MS.gene40748 | 0.846034 | 2.80E-59 | -1.69E-46 |
| MS.gene049499 | MS.gene40748 | 0.812029 | 5.21E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene40748 | 0.848162 | 7.31E-60 | -1.69E-46 |
| MS.gene050414 | MS.gene40748 | 0.810773 | 9.76E-51 | -1.69E-46 |
| MS.gene050571 | MS.gene40748 | 0.803039 | 4.22E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene40748 | 0.802869 | 4.57E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene40748 | 0.867945 | 9.41E-66 | -1.69E-46 |
| MS.gene050759 | MS.gene40748 | 0.830277 | 3.22E-55 | -1.69E-46 |
| MS.gene050941 | MS.gene40748 | 0.812166 | 4.86E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene40748 | 0.819299 | 1.25E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene40748 | 0.823733 | 1.18E-53 | -1.69E-46 |
| MS.gene051490 | MS.gene40748 | 0.8027 | 4.95E-49 | -1.69E-46 |
| MS.gene051856 | MS.gene40748 | 0.808784 | 2.61E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene40748 | 0.802132 | 6.48E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene40748 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene052052 | MS.gene40748 | 0.802648 | 5.08E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene40748 | 0.809487 | 1.85E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene40748 | 0.817198 | 3.73E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene40748 | 0.848579 | 5.60E-60 | -1.69E-46 |
| MS.gene052493 | MS.gene40748 | 0.813155 | 2.95E-51 | -1.69E-46 |
| MS.gene052776 | MS.gene40748 | 0.806406 | 8.35E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene40748 | 0.848753 | 5.01E-60 | -1.69E-46 |
| MS.gene053226 | MS.gene40748 | 0.81516 | 1.07E-51 | -1.69E-46 |
| MS.gene05350 | MS.gene40748 | 0.808678 | 2.75E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene40748 | 0.821499 | 3.91E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene40748 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene40748 | 0.831451 | 1.66E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene40748 | 0.821113 | 4.80E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene40748 | 0.823931 | 1.06E-53 | -1.69E-46 |
| MS.gene05517 | MS.gene40748 | 0.825474 | 4.60E-54 | -1.69E-46 |
| MS.gene055222 | MS.gene40748 | 0.801849 | 7.41E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene40748 | 0.871134 | 8.61E-67 | -1.69E-46 |
| MS.gene05552 | MS.gene40748 | 0.81077 | 9.77E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene40748 | 0.84575 | 3.34E-59 | -1.69E-46 |
| MS.gene056045 | MS.gene40748 | 0.819854 | 9.33E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene40748 | 0.863564 | 2.27E-64 | -1.69E-46 |
| MS.gene056308 | MS.gene40748 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene056390 | MS.gene40748 | 0.806553 | 7.78E-50 | -1.69E-46 |
| MS.gene056509 | MS.gene40748 | 0.808193 | 3.49E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene40748 | 0.810081 | 1.38E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene40748 | 0.800712 | 1.27E-48 | -1.69E-46 |
| MS.gene056831 | MS.gene40748 | 0.828056 | 1.11E-54 | -1.69E-46 |
| MS.gene057034 | MS.gene40748 | 0.809614 | 1.73E-50 | -1.69E-46 |
| MS.gene057155 | MS.gene40748 | 0.808796 | 2.60E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene40748 | 0.808024 | 3.80E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene40748 | -0.808646 | 2.80E-50 | -1.69E-46 |
| MS.gene057919 | MS.gene40748 | 0.805107 | 1.57E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene40748 | 0.814677 | 1.36E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene40748 | 0.802097 | 6.59E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene40748 | 0.822199 | 2.69E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene40748 | 0.814636 | 1.39E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene40748 | 0.821681 | 3.55E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene40748 | 0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene40748 | 0.816969 | 4.20E-52 | -1.69E-46 |
| MS.gene060435 | MS.gene40748 | 0.853988 | 1.66E-61 | -1.69E-46 |
| MS.gene06052 | MS.gene40748 | 0.836963 | 6.88E-57 | -1.69E-46 |
| MS.gene060932 | MS.gene40748 | 0.832527 | 8.98E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene40748 | 0.814494 | 1.50E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene40748 | 0.818414 | 1.99E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene40748 | 0.827783 | 1.29E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene40748 | 0.848542 | 5.74E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40748 | MS.gene20985 | PPI |
| MS.gene40748 | MS.gene47863 | PPI |
| MS.gene27907 | MS.gene40748 | PPI |
| MS.gene40748 | MS.gene003302 | PPI |
| MS.gene40748 | MS.gene058821 | PPI |
| MS.gene21056 | MS.gene40748 | PPI |
| MS.gene40748 | MS.gene058831 | PPI |
| MS.gene40748 | MS.gene005346 | PPI |
| MS.gene40748 | MS.gene023667 | PPI |
| MS.gene40748 | MS.gene74542 | PPI |
| MS.gene40748 | MS.gene03069 | PPI |
| MS.gene02100 | MS.gene40748 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40748.t1 | MTR_1g484830 | 97.626 | 337 | 8 | 0 | 1 | 337 | 1 | 337 | 0.0 | 652 |
| MS.gene40748.t1 | MTR_7g012670 | 75.000 | 56 | 12 | 1 | 136 | 191 | 2 | 55 | 8.39e-18 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40748.t1 | AT5G26770 | 70.270 | 333 | 94 | 2 | 7 | 337 | 6 | 335 | 2.54e-164 | 462 |
| MS.gene40748.t1 | AT5G26770 | 70.270 | 333 | 94 | 2 | 7 | 337 | 6 | 335 | 2.54e-164 | 462 |
| MS.gene40748.t1 | AT5G26770 | 65.730 | 356 | 94 | 3 | 7 | 337 | 6 | 358 | 6.96e-159 | 449 |
| MS.gene40748.t1 | AT5G26770 | 65.730 | 356 | 94 | 3 | 7 | 337 | 6 | 358 | 6.96e-159 | 449 |
| MS.gene40748.t1 | AT5G26770 | 64.264 | 333 | 94 | 3 | 7 | 337 | 6 | 315 | 1.46e-144 | 411 |
| MS.gene40748.t1 | AT1G09470 | 61.468 | 327 | 125 | 1 | 11 | 337 | 11 | 336 | 1.88e-136 | 391 |
| MS.gene40748.t1 | AT5G26770 | 69.643 | 280 | 85 | 0 | 7 | 286 | 6 | 285 | 1.12e-134 | 385 |
| MS.gene40748.t1 | AT3G05830 | 63.018 | 338 | 122 | 3 | 1 | 337 | 1 | 336 | 1.51e-132 | 381 |
| MS.gene40748.t1 | AT3G05830 | 63.018 | 338 | 122 | 3 | 1 | 337 | 1 | 336 | 1.51e-132 | 381 |
| MS.gene40748.t1 | AT1G09470 | 60.245 | 327 | 128 | 2 | 11 | 337 | 11 | 335 | 8.95e-130 | 374 |
| MS.gene40748.t1 | AT1G09470 | 60.245 | 327 | 128 | 2 | 11 | 337 | 11 | 335 | 8.95e-130 | 374 |
| MS.gene40748.t1 | AT3G05830 | 60.684 | 351 | 122 | 4 | 1 | 337 | 1 | 349 | 5.59e-129 | 372 |
| MS.gene40748.t1 | AT1G09483 | 67.925 | 106 | 32 | 2 | 233 | 337 | 1 | 105 | 2.30e-42 | 142 |
Find 56 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTTGATCCTTTGTTAA+AGG | 0.155858 | 1.2:+59016511 | MS.gene40748:CDS |
| AAAAGCAAAATCAGAATTTC+TGG | 0.195429 | 1.2:+59019459 | MS.gene40748:CDS |
| TGGTAAATTGCAAAAGAAAT+TGG | 0.246412 | 1.2:+59016905 | MS.gene40748:CDS |
| TAGAATTGAGCGTGATATTA+TGG | 0.255210 | 1.2:+59018636 | MS.gene40748:CDS |
| TTCATCTTCTCTATATTCTT+AGG | 0.270281 | 1.2:-59018724 | None:intergenic |
| TTGTGAACTGCGAAAATTAT+TGG | 0.291074 | 1.2:+59018690 | MS.gene40748:CDS |
| GTCTTTAGCTTCTGAGTTGA+AGG | 0.308444 | 1.2:+59016574 | MS.gene40748:CDS |
| AAGATTATGGAAATGGAAAT+TGG | 0.308528 | 1.2:+59016885 | MS.gene40748:CDS |
| AGAGACAAATGCAAAGATTA+TGG | 0.320596 | 1.2:+59016872 | MS.gene40748:CDS |
| AAATGCAAAGATTATGGAAA+TGG | 0.386311 | 1.2:+59016878 | MS.gene40748:CDS |
| CAGAATTTCTGGGACACCTC+TGG | 0.394928 | 1.2:+59019470 | MS.gene40748:CDS |
| AATATTGATTCAGCACATAA+AGG | 0.405506 | 1.2:+59018375 | MS.gene40748:intron |
| TAATTTACAGAAGGATCTTA+AGG | 0.405711 | 1.2:+59018573 | MS.gene40748:CDS |
| ATGGAGGCTCTCGCAAAATC+CGG | 0.409252 | 1.2:+59018655 | MS.gene40748:CDS |
| GAAACAACGACGTGCTGATC+AGG | 0.420227 | 1.2:+59018973 | MS.gene40748:CDS |
| GAAGGAGCTTCGAAGTCGTT+TGG | 0.422346 | 1.2:+59016592 | MS.gene40748:CDS |
| GAATAAGCTACTGGTTGTTA+AGG | 0.427044 | 1.2:+59018744 | MS.gene40748:CDS |
| GAAGAAGAGAGTGTTGAAGT+TGG | 0.430394 | 1.2:+59019000 | MS.gene40748:CDS |
| TCGAAGTCGTTTGGCTTCGC+AGG | 0.437680 | 1.2:+59016601 | MS.gene40748:CDS |
| TTAAGATCATGTCTGCTCAT+TGG | 0.439395 | 1.2:+59018797 | MS.gene40748:CDS |
| CGCAAAATCCGGGGAGAACA+AGG | 0.444877 | 1.2:+59018666 | MS.gene40748:CDS |
| ATCAACTGAAGCTTGTTTGT+CGG | 0.455999 | 1.2:-59016498 | None:intergenic |
| AGTTAGAGTTTCTTTAACAT+AGG | 0.456089 | 1.2:-59016630 | None:intergenic |
| CTCAGACGCGCAAACTTCAA+AGG | 0.472445 | 1.2:+59019047 | MS.gene40748:CDS |
| GTCTATGTCCATGCTAGTCT+TGG | 0.474536 | 1.2:+59019508 | MS.gene40748:CDS |
| TGATGAAATAGTTAGACTTA+AGG | 0.477477 | 1.2:+59018768 | MS.gene40748:CDS |
| GACTAAGGAATTAGAATCAC+AGG | 0.477639 | 1.2:+59018828 | MS.gene40748:CDS |
| TTCAAACTCTTCTGCTGAGA+AGG | 0.479809 | 1.2:+59016953 | MS.gene40748:CDS |
| TGGAGGCTCTCGCAAAATCC+GGG | 0.485779 | 1.2:+59018656 | MS.gene40748:CDS |
| CGAGCAGATGGGAGAGCGAC+GGG | 0.486908 | 1.2:+59019373 | MS.gene40748:intron |
| TTCACAATCCTTGTTCTCCC+CGG | 0.489475 | 1.2:-59018674 | None:intergenic |
| GAACTTAAAGATCAATTAGC+AGG | 0.491351 | 1.2:+59019410 | MS.gene40748:CDS |
| AGGAAAGCAACAAACAGTTT+CGG | 0.509158 | 1.2:+59019430 | MS.gene40748:CDS |
| GATTCAGCACATAAAGGAGT+TGG | 0.509544 | 1.2:+59018381 | MS.gene40748:intron |
| TCATTCAAATCCTTTAACAA+AGG | 0.512856 | 1.2:-59016521 | None:intergenic |
| TATGTCCATGCTAGTCTTGG+TGG | 0.514229 | 1.2:+59019511 | MS.gene40748:CDS |
| ACTGCGAAAATTATTGGATG+AGG | 0.521280 | 1.2:+59018696 | MS.gene40748:CDS |
| TCATTGGAAGCTCAAGACTA+AGG | 0.525004 | 1.2:+59018813 | MS.gene40748:CDS |
| TAAAGAAACTCTAACTAGAC+AGG | 0.538869 | 1.2:+59016637 | MS.gene40748:CDS |
| AGAGAAGATGAATAAGCTAC+TGG | 0.539996 | 1.2:+59018735 | MS.gene40748:CDS |
| AAAGCAAAATCAGAATTTCT+GGG | 0.542452 | 1.2:+59019460 | MS.gene40748:CDS |
| ACAGAAGGATCTTAAGGCAA+GGG | 0.550488 | 1.2:+59018579 | MS.gene40748:CDS |
| TACAGAAGGATCTTAAGGCA+AGG | 0.554800 | 1.2:+59018578 | MS.gene40748:CDS |
| CTGCGCTGATTGAGCTGATG+CGG | 0.556870 | 1.2:-59018455 | None:intergenic |
| TCAGACGCGCAAACTTCAAA+GGG | 0.558261 | 1.2:+59019048 | MS.gene40748:CDS |
| TTGTTTGTCGGAAATTGACA+TGG | 0.561919 | 1.2:-59016486 | None:intergenic |
| GCAGCTTGATAATTTACAGA+AGG | 0.573568 | 1.2:+59018564 | MS.gene40748:CDS |
| GAAGTTGGAATTCTGTCTGC+AGG | 0.579748 | 1.2:+59019015 | MS.gene40748:CDS |
| TCGAGCAGATGGGAGAGCGA+CGG | 0.608995 | 1.2:+59019372 | MS.gene40748:intron |
| TAGTTCTCTAAGAGAGCATG+AGG | 0.613433 | 1.2:+59018519 | MS.gene40748:CDS |
| GAGGAACGCGTAATTAGACT+AGG | 0.621102 | 1.2:+59018538 | MS.gene40748:CDS |
| AAATACCACCAAGACTAGCA+TGG | 0.627363 | 1.2:-59019516 | None:intergenic |
| AATTGAGCGTGATATTATGG+AGG | 0.642028 | 1.2:+59018639 | MS.gene40748:CDS |
| TGTTTGTCGGAAATTGACAT+GGG | 0.647558 | 1.2:-59016485 | None:intergenic |
| GGAGGCTCTCGCAAAATCCG+GGG | 0.664732 | 1.2:+59018657 | MS.gene40748:CDS |
| GCTCGTAATAGCTAGAGCAA+CGG | 0.671851 | 1.2:+59018420 | MS.gene40748:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAACAAAAAGTTT+AGG | + | chr1.2:59017327-59017346 | MS.gene40748:intron | 10.0% |
| !! | TATAAAAGAAAAAAGGTAAT+AGG | - | chr1.2:59017310-59017329 | None:intergenic | 15.0% |
| !!! | AAATTTTTGTATCAGTTTTA+CGG | + | chr1.2:59017684-59017703 | MS.gene40748:intron | 15.0% |
| !!! | AATTATTTGACCATTTTTTT+GGG | + | chr1.2:59019181-59019200 | MS.gene40748:intron | 15.0% |
| !!! | ACATATTTTACTTAACAATA+AGG | + | chr1.2:59017414-59017433 | MS.gene40748:intron | 15.0% |
| !!! | TTAATTCTTCAATTTTTTCT+AGG | + | chr1.2:59017550-59017569 | MS.gene40748:intron | 15.0% |
| !! | AATCCATCAATAAACTTAAA+TGG | - | chr1.2:59018937-59018956 | None:intergenic | 20.0% |
| !! | ACTTATAAGATATGATGTAT+AGG | - | chr1.2:59018052-59018071 | None:intergenic | 20.0% |
| !! | ATGATAAAAAACAAAGCTTT+CGG | + | chr1.2:59016540-59016559 | MS.gene40748:CDS | 20.0% |
| !! | GAACTTATAAATAAGAATTC+TGG | - | chr1.2:59017873-59017892 | None:intergenic | 20.0% |
| !! | TTTAAAGGTTAATGCATAAT+TGG | - | chr1.2:59018118-59018137 | None:intergenic | 20.0% |
| !!! | AAATTAATTTTAATGTAGGG+AGG | + | chr1.2:59017621-59017640 | MS.gene40748:intron | 20.0% |
| !!! | AAGTTACAATTTTTTTAGCA+TGG | - | chr1.2:59016741-59016760 | None:intergenic | 20.0% |
| !!! | AATCCATTTAAGTTTATTGA+TGG | + | chr1.2:59018931-59018950 | MS.gene40748:intron | 20.0% |
| !!! | GAATTATTTGACCATTTTTT+TGG | + | chr1.2:59019180-59019199 | MS.gene40748:intron | 20.0% |
| !!! | TTATACAAGTTTTCATTGAT+GGG | + | chr1.2:59019250-59019269 | MS.gene40748:intron | 20.0% |
| !!! | TTATGGATTATATTTTTCAC+AGG | + | chr1.2:59016845-59016864 | MS.gene40748:intron | 20.0% |
| !!! | TTTTTCTTCATTAAGGAATA+AGG | - | chr1.2:59018203-59018222 | None:intergenic | 20.0% |
| !!! | TTTTTTAGTACTGCAATTTA+TGG | + | chr1.2:59016828-59016847 | MS.gene40748:intron | 20.0% |
| ! | AAAAGCAAAATCAGAATTTC+TGG | + | chr1.2:59019459-59019478 | MS.gene40748:CDS | 25.0% |
| ! | AAAGCAAAATCAGAATTTCT+GGG | + | chr1.2:59019460-59019479 | MS.gene40748:CDS | 25.0% |
| ! | AAATGCAAAGATTATGGAAA+TGG | + | chr1.2:59016878-59016897 | MS.gene40748:CDS | 25.0% |
| ! | AACCACGAAAAGAAATAATA+AGG | - | chr1.2:59016999-59017018 | None:intergenic | 25.0% |
| ! | AAGATTATGGAAATGGAAAT+TGG | + | chr1.2:59016885-59016904 | MS.gene40748:CDS | 25.0% |
| ! | AATTAACATCCTAGTTAGAA+AGG | - | chr1.2:59017536-59017555 | None:intergenic | 25.0% |
| ! | AATTCAGTTCATATCTACAA+GGG | - | chr1.2:59017472-59017491 | None:intergenic | 25.0% |
| ! | AGTAACAAGATCCTAAAAAA+TGG | - | chr1.2:59017217-59017236 | None:intergenic | 25.0% |
| ! | AGTTAGAGTTTCTTTAACAT+AGG | - | chr1.2:59016633-59016652 | None:intergenic | 25.0% |
| ! | ATATGAACGAGTAATAACAA+GGG | - | chr1.2:59018874-59018893 | None:intergenic | 25.0% |
| ! | ATTAACATCCTAGTTAGAAA+GGG | - | chr1.2:59017535-59017554 | None:intergenic | 25.0% |
| ! | ATTACTCGTTCATATACTTA+GGG | + | chr1.2:59018879-59018898 | MS.gene40748:intron | 25.0% |
| ! | ATTCTTTGTAACTAAAGTCT+CGG | + | chr1.2:59018328-59018347 | MS.gene40748:intron | 25.0% |
| ! | CTAGAGTACAATCTATTTAA+AGG | - | chr1.2:59018133-59018152 | None:intergenic | 25.0% |
| ! | GATAAGAAACACTACAAATA+AGG | + | chr1.2:59019222-59019241 | MS.gene40748:intron | 25.0% |
| ! | GTAACAAGATCCTAAAAAAT+GGG | - | chr1.2:59017216-59017235 | None:intergenic | 25.0% |
| ! | TAAATTCTTGCCCAAAAAAA+TGG | - | chr1.2:59019194-59019213 | None:intergenic | 25.0% |
| ! | TAATTTACAGAAGGATCTTA+AGG | + | chr1.2:59018573-59018592 | MS.gene40748:CDS | 25.0% |
| ! | TATATGAACGAGTAATAACA+AGG | - | chr1.2:59018875-59018894 | None:intergenic | 25.0% |
| ! | TATTACTCGTTCATATACTT+AGG | + | chr1.2:59018878-59018897 | MS.gene40748:intron | 25.0% |
| ! | TCATTCAAATCCTTTAACAA+AGG | - | chr1.2:59016524-59016543 | None:intergenic | 25.0% |
| ! | TGATGAAATAGTTAGACTTA+AGG | + | chr1.2:59018768-59018787 | MS.gene40748:CDS | 25.0% |
| ! | TGGTAAATTGCAAAAGAAAT+TGG | + | chr1.2:59016905-59016924 | MS.gene40748:CDS | 25.0% |
| ! | TTCATCTTCTCTATATTCTT+AGG | - | chr1.2:59018727-59018746 | None:intergenic | 25.0% |
| !! | AGTATCAATCATTCTACTTT+TGG | + | chr1.2:59016768-59016787 | MS.gene40748:intron | 25.0% |
| !! | CTTATACAAGTTTTCATTGA+TGG | + | chr1.2:59019249-59019268 | MS.gene40748:intron | 25.0% |
| !! | TGTCATCTTTTTCTTCATTA+AGG | - | chr1.2:59018210-59018229 | None:intergenic | 25.0% |
| !!! | AAACTTAAATGGATTAGCTA+TGG | - | chr1.2:59018926-59018945 | None:intergenic | 25.0% |
| !!! | AATATTGATTCAGCACATAA+AGG | + | chr1.2:59018375-59018394 | MS.gene40748:intron | 25.0% |
| !!! | AATGTTTCCACTTTTTGTTT+TGG | + | chr1.2:59017065-59017084 | MS.gene40748:intron | 25.0% |
| !!! | ATAATTTTTCTAGCCAGTAA+TGG | + | chr1.2:59017968-59017987 | MS.gene40748:intron | 25.0% |
| !!! | ATTAGTCTTAAGACTTTCTT+TGG | - | chr1.2:59017373-59017392 | None:intergenic | 25.0% |
| !!! | GAAATTCTGATTTTGCTTTT+CGG | - | chr1.2:59019459-59019478 | None:intergenic | 25.0% |
| !!! | TACCTTATTATTTCTTTTCG+TGG | + | chr1.2:59016994-59017013 | MS.gene40748:intron | 25.0% |
| !!! | TTGTTCTGTTTTTCTCTTTT+TGG | + | chr1.2:59016715-59016734 | MS.gene40748:intron | 25.0% |
| AACAAAAAGTTTAGGTGAGA+TGG | + | chr1.2:59017335-59017354 | MS.gene40748:intron | 30.0% | |
| AGAGACAAATGCAAAGATTA+TGG | + | chr1.2:59016872-59016891 | MS.gene40748:CDS | 30.0% | |
| AGGAAATGCTTAAATGTTTG+TGG | + | chr1.2:59019111-59019130 | MS.gene40748:intron | 30.0% | |
| ATAAGTGACTTCAATAGTGA+AGG | - | chr1.2:59017895-59017914 | None:intergenic | 30.0% | |
| ATCACGTGAGTATATTCAAT+AGG | + | chr1.2:59017937-59017956 | MS.gene40748:intron | 30.0% | |
| CTTCGAACTTCAAAAAGAAT+TGG | + | chr1.2:59018486-59018505 | MS.gene40748:CDS | 30.0% | |
| GAACTTAAAGATCAATTAGC+AGG | + | chr1.2:59019410-59019429 | MS.gene40748:CDS | 30.0% | |
| GAATTCAGTTCATATCTACA+AGG | - | chr1.2:59017473-59017492 | None:intergenic | 30.0% | |
| GGGTCATTTGAATATACAAT+TGG | - | chr1.2:59017748-59017767 | None:intergenic | 30.0% | |
| GTAAATGATCGCATGATAAT+AGG | - | chr1.2:59019291-59019310 | None:intergenic | 30.0% | |
| TAAAGAAACTCTAACTAGAC+AGG | + | chr1.2:59016637-59016656 | MS.gene40748:CDS | 30.0% | |
| TAAGGTCTTTACATTAGTAG+CGG | + | chr1.2:59017432-59017451 | MS.gene40748:intron | 30.0% | |
| TAGAATTGAGCGTGATATTA+TGG | + | chr1.2:59018636-59018655 | MS.gene40748:CDS | 30.0% | |
| TCACGTGAGTATATTCAATA+GGG | + | chr1.2:59017938-59017957 | MS.gene40748:intron | 30.0% | |
| TCACTTATTGTACTGCAATA+TGG | + | chr1.2:59017907-59017926 | MS.gene40748:intron | 30.0% | |
| TCATTACTTCATCGATAACT+TGG | - | chr1.2:59018083-59018102 | None:intergenic | 30.0% | |
| TGTGGTAATTCAGAAAAATG+TGG | - | chr1.2:59017576-59017595 | None:intergenic | 30.0% | |
| TTATTGTACTGCAATATGGA+AGG | + | chr1.2:59017911-59017930 | MS.gene40748:intron | 30.0% | |
| TTCAGTTGATCCTTTGTTAA+AGG | + | chr1.2:59016511-59016530 | MS.gene40748:CDS | 30.0% | |
| TTGTGAACTGCGAAAATTAT+TGG | + | chr1.2:59018690-59018709 | MS.gene40748:CDS | 30.0% | |
| TTTAATGTAGGGAGGAAATT+GGG | + | chr1.2:59017629-59017648 | MS.gene40748:intron | 30.0% | |
| ! | AGTGATTTTCCAACTTAGAA+TGG | - | chr1.2:59017661-59017680 | None:intergenic | 30.0% |
| ! | ATAAGAGAGTTTTCCAACAA+TGG | - | chr1.2:59017503-59017522 | None:intergenic | 30.0% |
| ! | TCGATGAAGTAATGAACTTT+TGG | + | chr1.2:59018088-59018107 | MS.gene40748:intron | 30.0% |
| ! | TGATTTCACTAAGTTGACTA+AGG | - | chr1.2:59019331-59019350 | None:intergenic | 30.0% |
| ! | TTTTAATGTAGGGAGGAAAT+TGG | + | chr1.2:59017628-59017647 | MS.gene40748:intron | 30.0% |
| !! | ATCTAATGCAGTTTTGGTAA+TGG | - | chr1.2:59018244-59018263 | None:intergenic | 30.0% |
| !! | GGCTTTCTTTTCTTTATTTG+AGG | + | chr1.2:59018900-59018919 | MS.gene40748:intron | 30.0% |
| !! | TTCATTTTAGCATATCCCAT+TGG | + | chr1.2:59017252-59017271 | MS.gene40748:intron | 30.0% |
| !! | TTGATTTGGTAATAAGCTTG+TGG | - | chr1.2:59017594-59017613 | None:intergenic | 30.0% |
| !!! | CTGTTATAGATCTGCTTTTT+GGG | + | chr1.2:59019149-59019168 | MS.gene40748:intron | 30.0% |
| AATTGAGCGTGATATTATGG+AGG | + | chr1.2:59018639-59018658 | MS.gene40748:CDS | 35.0% | |
| ACTGCGAAAATTATTGGATG+AGG | + | chr1.2:59018696-59018715 | MS.gene40748:CDS | 35.0% | |
| AGAAAAAAATGAGCAGCTTC+AGG | + | chr1.2:59016929-59016948 | MS.gene40748:CDS | 35.0% | |
| AGAAGGTTGAGTAGATACTT+TGG | + | chr1.2:59017284-59017303 | MS.gene40748:intron | 35.0% | |
| AGAGAAGATGAATAAGCTAC+TGG | + | chr1.2:59018735-59018754 | MS.gene40748:CDS | 35.0% | |
| AGGAAAGCAACAAACAGTTT+CGG | + | chr1.2:59019430-59019449 | MS.gene40748:CDS | 35.0% | |
| CGTGGTTTATGAATATCTCT+TGG | + | chr1.2:59017012-59017031 | MS.gene40748:intron | 35.0% | |
| CTATGTACATAATGTTCCGT+TGG | - | chr1.2:59018287-59018306 | None:intergenic | 35.0% | |
| GAATCGTCCAAAACAAAAAG+TGG | - | chr1.2:59017075-59017094 | None:intergenic | 35.0% | |
| GAATTCTTATCGACCATTGT+TGG | + | chr1.2:59017487-59017506 | MS.gene40748:intron | 35.0% | |
| GACTAAGGAATTAGAATCAC+AGG | + | chr1.2:59018828-59018847 | MS.gene40748:CDS | 35.0% | |
| GAGTATATTCAATAGGGACT+GGG | + | chr1.2:59017944-59017963 | MS.gene40748:intron | 35.0% | |
| GGAAAACTCTCTTATTCTTG+TGG | + | chr1.2:59017508-59017527 | MS.gene40748:intron | 35.0% | |
| GGGATATGCTAAAATGAAAG+AGG | - | chr1.2:59017250-59017269 | None:intergenic | 35.0% | |
| GTTTGTGGTTACAGTGAATT+GGG | + | chr1.2:59019126-59019145 | MS.gene40748:intron | 35.0% | |
| TAATAACAAGGGCAAAGATC+AGG | - | chr1.2:59018863-59018882 | None:intergenic | 35.0% | |
| TGAGTATATTCAATAGGGAC+TGG | + | chr1.2:59017943-59017962 | MS.gene40748:intron | 35.0% | |
| TGTTTGTGGTTACAGTGAAT+TGG | + | chr1.2:59019125-59019144 | MS.gene40748:intron | 35.0% | |
| TTAAGATCATGTCTGCTCAT+TGG | + | chr1.2:59018797-59018816 | MS.gene40748:CDS | 35.0% | |
| ! | ATCAACTGAAGCTTGTTTGT+CGG | - | chr1.2:59016501-59016520 | None:intergenic | 35.0% |
| ! | CATCACAATTTTGAATCCAG+AGG | - | chr1.2:59019489-59019508 | None:intergenic | 35.0% |
| ! | GAATAAGCTACTGGTTGTTA+AGG | + | chr1.2:59018744-59018763 | MS.gene40748:CDS | 35.0% |
| ! | GATGGATTTCAAAACACAGT+TGG | + | chr1.2:59018949-59018968 | MS.gene40748:intron | 35.0% |
| ! | GCAGCTTGATAATTTACAGA+AGG | + | chr1.2:59018564-59018583 | MS.gene40748:CDS | 35.0% |
| ! | GTCAGAATCTAATGCAGTTT+TGG | - | chr1.2:59018250-59018269 | None:intergenic | 35.0% |
| !! | GCTGTTATAGATCTGCTTTT+TGG | + | chr1.2:59019148-59019167 | MS.gene40748:intron | 35.0% |
| !! | TCTTGGTGGTATTTTCAAAG+CGG | + | chr1.2:59019525-59019544 | MS.gene40748:CDS | 35.0% |
| !! | TTTTCATTGATGGGCATGAT+TGG | + | chr1.2:59019259-59019278 | MS.gene40748:intron | 35.0% |
| !!! | ACACTAGATGCCCATTTTTT+AGG | + | chr1.2:59017203-59017222 | MS.gene40748:intron | 35.0% |
| !!! | CTTTTTGAAGTTCGAAGCAT+TGG | - | chr1.2:59018483-59018502 | None:intergenic | 35.0% |
| !!! | GCACTCATTTTGTGTCATTT+AGG | + | chr1.2:59019091-59019110 | MS.gene40748:intron | 35.0% |
| !!! | GTTTGCTTTTCTAGCTGAAA+TGG | + | chr1.2:59017115-59017134 | MS.gene40748:intron | 35.0% |
| !!! | TTCTACTTTTGGAGTCTTTG+TGG | + | chr1.2:59016779-59016798 | MS.gene40748:intron | 35.0% |
| AAATACCACCAAGACTAGCA+TGG | - | chr1.2:59019519-59019538 | None:intergenic | 40.0% | |
| AAGAATTCTGGCAGCATCTA+TGG | - | chr1.2:59017861-59017880 | None:intergenic | 40.0% | |
| ACAGAAGGATCTTAAGGCAA+GGG | + | chr1.2:59018579-59018598 | MS.gene40748:CDS | 40.0% | |
| GACTAAGGATGTTCAGATGA+TGG | - | chr1.2:59019316-59019335 | None:intergenic | 40.0% | |
| GACTTTCTTTGGCCAAGTAA+AGG | - | chr1.2:59017362-59017381 | None:intergenic | 40.0% | |
| GATAAGATCCTCTCCATTAC+TGG | - | chr1.2:59017984-59018003 | None:intergenic | 40.0% | |
| GATTCAGCACATAAAGGAGT+TGG | + | chr1.2:59018381-59018400 | MS.gene40748:intron | 40.0% | |
| TACAGAAGGATCTTAAGGCA+AGG | + | chr1.2:59018578-59018597 | MS.gene40748:CDS | 40.0% | |
| TCATTGGAAGCTCAAGACTA+AGG | + | chr1.2:59018813-59018832 | MS.gene40748:CDS | 40.0% | |
| TGCAAATATGGGCACAACAT+AGG | - | chr1.2:59017822-59017841 | None:intergenic | 40.0% | |
| TTCAAACTCTTCTGCTGAGA+AGG | + | chr1.2:59016953-59016972 | MS.gene40748:CDS | 40.0% | |
| ! | ACTAGTTCTCTGTTGACCAA+CGG | + | chr1.2:59018268-59018287 | MS.gene40748:intron | 40.0% |
| ! | GTCTTTAGCTTCTGAGTTGA+AGG | + | chr1.2:59016574-59016593 | MS.gene40748:CDS | 40.0% |
| ! | TAGTTCTCTAAGAGAGCATG+AGG | + | chr1.2:59018519-59018538 | MS.gene40748:CDS | 40.0% |
| ! | TTTGGAGTCTTTGTGGTTGT+GGG | + | chr1.2:59016786-59016805 | MS.gene40748:intron | 40.0% |
| !! | GAAGAAGAGAGTGTTGAAGT+TGG | + | chr1.2:59019000-59019019 | MS.gene40748:CDS | 40.0% |
| !! | TAGCATATCCCATTGGTCTT+TGG | + | chr1.2:59017259-59017278 | MS.gene40748:intron | 40.0% |
| !! | TTTTCTAGCCAGTAATGGAG+AGG | + | chr1.2:59017973-59017992 | MS.gene40748:intron | 40.0% |
| !!! | TTTTGGAGTCTTTGTGGTTG+TGG | + | chr1.2:59016785-59016804 | MS.gene40748:intron | 40.0% |
| AAACTACCAACGCTCTAGCA+CGG | - | chr1.2:59017774-59017793 | None:intergenic | 45.0% | |
| ACCTTCTCACCAAAGACCAA+TGG | - | chr1.2:59017271-59017290 | None:intergenic | 45.0% | |
| AGGTGAGATGGACCTTTACT+TGG | + | chr1.2:59017347-59017366 | MS.gene40748:intron | 45.0% | |
| CCTTCTCACCAAAGACCAAT+GGG | - | chr1.2:59017270-59017289 | None:intergenic | 45.0% | |
| CTTGTGGTCCCTTTCTAACT+AGG | + | chr1.2:59017524-59017543 | MS.gene40748:intron | 45.0% | |
| GAAGTTGGAATTCTGTCTGC+AGG | + | chr1.2:59019015-59019034 | MS.gene40748:CDS | 45.0% | |
| GAGGAACGCGTAATTAGACT+AGG | + | chr1.2:59018538-59018557 | MS.gene40748:CDS | 45.0% | |
| GCTCGTAATAGCTAGAGCAA+CGG | + | chr1.2:59018420-59018439 | MS.gene40748:CDS | 45.0% | |
| GGGTAGCATGGTGCAAATAT+GGG | - | chr1.2:59017833-59017852 | None:intergenic | 45.0% | |
| TCAGACGCGCAAACTTCAAA+GGG | + | chr1.2:59019048-59019067 | MS.gene40748:CDS | 45.0% | |
| TCTATGGCAATTGGGTAGCA+TGG | - | chr1.2:59017845-59017864 | None:intergenic | 45.0% | |
| TGGCAGCATCTATGGCAATT+GGG | - | chr1.2:59017853-59017872 | None:intergenic | 45.0% | |
| TGGGTAGCATGGTGCAAATA+TGG | - | chr1.2:59017834-59017853 | None:intergenic | 45.0% | |
| TGTAGGGAGGAAATTGGGAT+TGG | + | chr1.2:59017634-59017653 | MS.gene40748:intron | 45.0% | |
| TTCACAATCCTTGTTCTCCC+CGG | - | chr1.2:59018677-59018696 | None:intergenic | 45.0% | |
| TTGGAGTCTTTGTGGTTGTG+GGG | + | chr1.2:59016787-59016806 | MS.gene40748:intron | 45.0% | |
| ! | GTCTATGTCCATGCTAGTCT+TGG | + | chr1.2:59019508-59019527 | MS.gene40748:CDS | 45.0% |
| !! | GCATGTGTTTTCGAGCAGAT+GGG | + | chr1.2:59019362-59019381 | MS.gene40748:intron | 45.0% |
| !! | GGGATTGGTCCATTCTAAGT+TGG | + | chr1.2:59017649-59017668 | MS.gene40748:intron | 45.0% |
| !! | TATGTCCATGCTAGTCTTGG+TGG | + | chr1.2:59019511-59019530 | MS.gene40748:CDS | 45.0% |
| !! | TGCATGTGTTTTCGAGCAGA+TGG | + | chr1.2:59019361-59019380 | MS.gene40748:intron | 45.0% |
| !! | TTATTATTATAAAAGAAAAA+AGG | - | chr1.2:59017317-59017336 | None:intergenic | 5.0% |
| !!! | ATTAAAATTAATTTTAATGT+AGG | + | chr1.2:59017617-59017636 | MS.gene40748:intron | 5.0% |
| !!! | TTAAAATTAATTTTAATGTA+GGG | + | chr1.2:59017618-59017637 | MS.gene40748:intron | 5.0% |
| !!! | TTAATTTTAATTTTTTGATT+TGG | - | chr1.2:59017608-59017627 | None:intergenic | 5.0% |
| AACTACCAACGCTCTAGCAC+GGG | - | chr1.2:59017773-59017792 | None:intergenic | 50.0% | |
| ATGGAGGCTCTCGCAAAATC+CGG | + | chr1.2:59018655-59018674 | MS.gene40748:CDS | 50.0% | |
| CTCAGACGCGCAAACTTCAA+AGG | + | chr1.2:59019047-59019066 | MS.gene40748:CDS | 50.0% | |
| CTGGCAGCATCTATGGCAAT+TGG | - | chr1.2:59017854-59017873 | None:intergenic | 50.0% | |
| GAAGGAGCTTCGAAGTCGTT+TGG | + | chr1.2:59016592-59016611 | MS.gene40748:CDS | 50.0% | |
| TCTTTGTGGTTGTGGGGTCA+AGG | + | chr1.2:59016793-59016812 | MS.gene40748:intron | 50.0% | |
| ! | GAAACAACGACGTGCTGATC+AGG | + | chr1.2:59018973-59018992 | MS.gene40748:CDS | 50.0% |
| !! | CAGAATTTCTGGGACACCTC+TGG | + | chr1.2:59019470-59019489 | MS.gene40748:CDS | 50.0% |
| !! | CCCATTGGTCTTTGGTGAGA+AGG | + | chr1.2:59017267-59017286 | MS.gene40748:intron | 50.0% |
| CGCAAAATCCGGGGAGAACA+AGG | + | chr1.2:59018666-59018685 | MS.gene40748:CDS | 55.0% | |
| TGGAGGCTCTCGCAAAATCC+GGG | + | chr1.2:59018656-59018675 | MS.gene40748:CDS | 55.0% | |
| ! | TCGAAGTCGTTTGGCTTCGC+AGG | + | chr1.2:59016601-59016620 | MS.gene40748:CDS | 55.0% |
| !! | CTGCGCTGATTGAGCTGATG+CGG | - | chr1.2:59018458-59018477 | None:intergenic | 55.0% |
| ACCAACGCTCTAGCACGGGA+AGG | - | chr1.2:59017769-59017788 | None:intergenic | 60.0% | |
| CCAACGCTCTAGCACGGGAA+GGG | - | chr1.2:59017768-59017787 | None:intergenic | 60.0% | |
| GGAGGCTCTCGCAAAATCCG+GGG | + | chr1.2:59018657-59018676 | MS.gene40748:CDS | 60.0% | |
| TCGAGCAGATGGGAGAGCGA+CGG | + | chr1.2:59019372-59019391 | MS.gene40748:intron | 60.0% | |
| CCCTTCCCGTGCTAGAGCGT+TGG | + | chr1.2:59017765-59017784 | MS.gene40748:intron | 65.0% | |
| CGAGCAGATGGGAGAGCGAC+GGG | + | chr1.2:59019373-59019392 | MS.gene40748:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59016488 | 59019550 | 59016488 | ID=MS.gene40748 |
| chr1.2 | mRNA | 59016488 | 59019550 | 59016488 | ID=MS.gene40748.t1;Parent=MS.gene40748 |
| chr1.2 | exon | 59016488 | 59016658 | 59016488 | ID=MS.gene40748.t1.exon1;Parent=MS.gene40748.t1 |
| chr1.2 | CDS | 59016488 | 59016658 | 59016488 | ID=cds.MS.gene40748.t1;Parent=MS.gene40748.t1 |
| chr1.2 | exon | 59016867 | 59016974 | 59016867 | ID=MS.gene40748.t1.exon2;Parent=MS.gene40748.t1 |
| chr1.2 | CDS | 59016867 | 59016974 | 59016867 | ID=cds.MS.gene40748.t1;Parent=MS.gene40748.t1 |
| chr1.2 | exon | 59018388 | 59018849 | 59018388 | ID=MS.gene40748.t1.exon3;Parent=MS.gene40748.t1 |
| chr1.2 | CDS | 59018388 | 59018849 | 59018388 | ID=cds.MS.gene40748.t1;Parent=MS.gene40748.t1 |
| chr1.2 | exon | 59018968 | 59019069 | 59018968 | ID=MS.gene40748.t1.exon4;Parent=MS.gene40748.t1 |
| chr1.2 | CDS | 59018968 | 59019069 | 59018968 | ID=cds.MS.gene40748.t1;Parent=MS.gene40748.t1 |
| chr1.2 | exon | 59019380 | 59019550 | 59019380 | ID=MS.gene40748.t1.exon5;Parent=MS.gene40748.t1 |
| chr1.2 | CDS | 59019380 | 59019550 | 59019380 | ID=cds.MS.gene40748.t1;Parent=MS.gene40748.t1 |
| Gene Sequence |
| Protein sequence |
