Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006555.t1 | XP_013456629.1 | 98.5 | 342 | 5 | 0 | 1 | 342 | 1 | 342 | 8.00E-171 | 609.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006555.t1 | Q9FNY2 | 67.5 | 289 | 60 | 5 | 87 | 342 | 98 | 385 | 6.1e-95 | 349.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006555.t1 | A0A072UXQ9 | 98.5 | 342 | 5 | 0 | 1 | 342 | 1 | 342 | 5.7e-171 | 609.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006555.t1 | TF | E2F-DP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006555 | MS.gene011754 | PPI |
| MS.gene006555 | MS.gene024895 | PPI |
| MS.gene006555 | MS.gene99648 | PPI |
| MS.gene006555 | MS.gene20253 | PPI |
| MS.gene006555 | MS.gene44510 | PPI |
| MS.gene006555 | MS.gene041917 | PPI |
| MS.gene014301 | MS.gene006555 | PPI |
| MS.gene006555 | MS.gene064876 | PPI |
| MS.gene006555 | MS.gene09552 | PPI |
| MS.gene006555 | MS.gene015213 | PPI |
| MS.gene006555 | MS.gene81646 | PPI |
| MS.gene006555 | MS.gene98552 | PPI |
| MS.gene006555 | MS.gene57177 | PPI |
| MS.gene006555 | MS.gene91416 | PPI |
| MS.gene006555 | MS.gene80094 | PPI |
| MS.gene016712 | MS.gene006555 | PPI |
| MS.gene006555 | MS.gene015212 | PPI |
| MS.gene006555 | MS.gene000128 | PPI |
| MS.gene006555 | MS.gene09551 | PPI |
| MS.gene006555 | MS.gene070538 | PPI |
| MS.gene006555 | MS.gene94315 | PPI |
| MS.gene006555 | MS.gene66836 | PPI |
| MS.gene006555 | MS.gene20252 | PPI |
| MS.gene006555 | MS.gene069975 | PPI |
| MS.gene006555 | MS.gene92318 | PPI |
| MS.gene006555 | MS.gene94307 | PPI |
| MS.gene006555 | MS.gene57178 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006555.t1 | MTR_4g077797 | 98.830 | 342 | 4 | 0 | 1 | 342 | 1 | 342 | 0.0 | 699 |
| MS.gene006555.t1 | MTR_4g077803 | 84.393 | 346 | 48 | 3 | 1 | 342 | 1 | 344 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006555.t1 | AT5G03415 | 64.067 | 359 | 91 | 8 | 21 | 342 | 28 | 385 | 8.14e-148 | 422 |
| MS.gene006555.t1 | AT5G03415 | 62.117 | 359 | 92 | 9 | 21 | 342 | 28 | 379 | 1.06e-139 | 401 |
| MS.gene006555.t1 | AT5G02470 | 51.376 | 218 | 97 | 3 | 63 | 279 | 32 | 241 | 1.28e-75 | 235 |
| MS.gene006555.t1 | AT5G02470 | 51.376 | 218 | 97 | 3 | 63 | 279 | 32 | 241 | 1.28e-75 | 235 |
| MS.gene006555.t1 | AT5G02470 | 51.376 | 218 | 97 | 3 | 63 | 279 | 32 | 241 | 1.28e-75 | 235 |
Find 89 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCAAGGCAATGGATTT+TGG | 0.207282 | 4.4:-32800493 | MS.gene006555:CDS |
| TCCACTCCCTGGAATATTAA+AGG | 0.271571 | 4.4:-32800332 | MS.gene006555:CDS |
| GGTTGTGGAACTACGCTTTC+CGG | 0.284948 | 4.4:-32804129 | MS.gene006555:CDS |
| TATTATTGCTACAAGTTTGT+AGG | 0.286595 | 4.4:-32801484 | MS.gene006555:intron |
| ATTGTTCATTTCGTTGAATA+AGG | 0.299922 | 4.4:+32801452 | None:intergenic |
| TATACCTGAACCAGAATAAA+AGG | 0.312486 | 4.4:+32801388 | None:intergenic |
| ACTCTTGCCTTTAATATTCC+AGG | 0.333887 | 4.4:+32800325 | None:intergenic |
| TGATGCTCTGAATGTTCTTA+TGG | 0.333958 | 4.4:-32801903 | MS.gene006555:CDS |
| AACCTTTCATACTAAATTGC+CGG | 0.339281 | 4.4:+32803130 | None:intergenic |
| TGGTGGTTTGTCCCCTGATC+AGG | 0.346346 | 4.4:-32802069 | MS.gene006555:intron |
| CAGTTTCAAACATGTTAGTT+AGG | 0.354238 | 4.4:-32800369 | MS.gene006555:CDS |
| TCCTGCTGGTTGAGCCTGAT+TGG | 0.355296 | 4.4:+32804106 | None:intergenic |
| GAAGATAAGAAAACCTGATC+AGG | 0.380867 | 4.4:+32802056 | None:intergenic |
| CGAAGAGGACGAGGAATTGA+TGG | 0.402627 | 4.4:-32804151 | MS.gene006555:CDS |
| ACTACGCTTTCCGGCCAATC+AGG | 0.405110 | 4.4:-32804120 | MS.gene006555:CDS |
| GGCTCAACCAGCAGGAGTGC+CGG | 0.417822 | 4.4:-32804099 | MS.gene006555:CDS |
| TTAAATAGACACAGCGTCTT+GGG | 0.420475 | 4.4:-32801702 | MS.gene006555:intron |
| GCCTTTAATATTCCAGGGAG+TGG | 0.432840 | 4.4:+32800331 | None:intergenic |
| AGACACAGCGTCTTGGGCTT+AGG | 0.448668 | 4.4:-32801696 | MS.gene006555:CDS |
| TCCTCATGCAACTGTGGAAG+TGG | 0.457569 | 4.4:-32800862 | MS.gene006555:CDS |
| ATTAAATAGACACAGCGTCT+TGG | 0.463317 | 4.4:-32801703 | MS.gene006555:intron |
| GGGGAAGGTTCTAGCATGTC+AGG | 0.468504 | 4.4:-32800418 | MS.gene006555:CDS |
| AGACTCACGCAACTACTGCC+TGG | 0.468595 | 4.4:+32803974 | None:intergenic |
| GCCAATCAGGCTCAACCAGC+AGG | 0.469228 | 4.4:-32804107 | MS.gene006555:CDS |
| GACGAGGAATTGATGGGTTG+TGG | 0.469944 | 4.4:-32804144 | MS.gene006555:CDS |
| GGCTATGAATATTATTTCCA+AGG | 0.477616 | 4.4:-32801882 | MS.gene006555:CDS |
| AGGTAAAGATACACCTCCAC+TGG | 0.479385 | 4.4:+32801408 | None:intergenic |
| CTGCTCAAGCTCCTGCAGAT+AGG | 0.480130 | 4.4:+32801651 | None:intergenic |
| GCTCAACCAGCAGGAGTGCC+GGG | 0.480925 | 4.4:-32804098 | MS.gene006555:CDS |
| GAGTGATATTGAAGAACTAA+AGG | 0.483152 | 4.4:-32801816 | MS.gene006555:intron |
| CTCCGGCAATTTAGTATGAA+AGG | 0.485877 | 4.4:-32803132 | MS.gene006555:intron |
| CGGTAACCCGGCACTCCTGC+TGG | 0.489023 | 4.4:+32804092 | None:intergenic |
| GCTGGTTGAGCCTGATTGGC+CGG | 0.493558 | 4.4:+32804110 | None:intergenic |
| AATGAACAATTATATAGCTC+AGG | 0.501710 | 4.4:-32801439 | MS.gene006555:CDS |
| AGCCGGAGTGAGCAGACCAC+GGG | 0.509849 | 4.4:-32804066 | MS.gene006555:CDS |
| GGGGACAAACCACCATTGCT+TGG | 0.511216 | 4.4:+32802077 | None:intergenic |
| GACTCACGCAACTACTGCCT+GGG | 0.512394 | 4.4:+32803975 | None:intergenic |
| ATAAGAATGGAAGAGGGCTC+CGG | 0.512718 | 4.4:-32803149 | MS.gene006555:CDS |
| GTCCGTGGACGAAGAGGACG+AGG | 0.514783 | 4.4:-32804160 | MS.gene006555:CDS |
| CTCTTGCCTTTAATATTCCA+GGG | 0.515553 | 4.4:+32800326 | None:intergenic |
| TGTGAGAAGGTAGAAAGTAA+AGG | 0.516897 | 4.4:-32802619 | MS.gene006555:CDS |
| TGATGACGATGCTGCTTCCC+AGG | 0.519370 | 4.4:-32803992 | MS.gene006555:CDS |
| CAATTATGTTCTCAAGGCAA+TGG | 0.525211 | 4.4:-32800500 | MS.gene006555:CDS |
| CCGACATCACCTCCACTCCC+TGG | 0.527073 | 4.4:-32800343 | MS.gene006555:CDS |
| TTCCTCGTCCTCTTCGTCCA+CGG | 0.529381 | 4.4:+32804158 | None:intergenic |
| GTCAGGCATGTATCAATCAC+AGG | 0.555543 | 4.4:-32800401 | MS.gene006555:CDS |
| TTGTCGTCATGCAGCTCGAA+AGG | 0.559999 | 4.4:+32800520 | None:intergenic |
| AAGATAAGAAAACCTGATCA+GGG | 0.563158 | 4.4:+32802057 | None:intergenic |
| CACACAATATTGCGGATGGA+GGG | 0.564114 | 4.4:-32800438 | MS.gene006555:CDS |
| GGCTTAGGAGTAGAATTGAA+AGG | 0.565800 | 4.4:-32801681 | MS.gene006555:CDS |
| TTTAATATTCCAGGGAGTGG+AGG | 0.566833 | 4.4:+32800334 | None:intergenic |
| GTCTGCTCACTCCGGCTAGA+CGG | 0.569869 | 4.4:+32804072 | None:intergenic |
| TTTGAGAGCAGCGTTATCAC+CGG | 0.570401 | 4.4:+32804035 | None:intergenic |
| CAGACCACGGGGACAGCCGC+CGG | 0.573222 | 4.4:-32804054 | MS.gene006555:CDS |
| GTGCCGGGTTACCGTCTAGC+CGG | 0.573556 | 4.4:-32804083 | MS.gene006555:CDS |
| AAGGAAAGCAGCCTATCTGC+AGG | 0.574961 | 4.4:-32801662 | MS.gene006555:CDS |
| AATATTGCGGATGGAGGGGA+AGG | 0.575401 | 4.4:-32800433 | MS.gene006555:CDS |
| TTCTTCAATATCACTCAGAC+TGG | 0.575701 | 4.4:+32801823 | None:intergenic |
| CCAGGGAGTGGAGGTGATGT+CGG | 0.580031 | 4.4:+32800343 | None:intergenic |
| ACACAATATTGCGGATGGAG+GGG | 0.585147 | 4.4:-32800437 | MS.gene006555:CDS |
| TCCCCGTGGTCTGCTCACTC+CGG | 0.599110 | 4.4:+32804064 | None:intergenic |
| ACACACAATATTGCGGATGG+AGG | 0.602906 | 4.4:-32800439 | MS.gene006555:CDS |
| GAAGAGGACGAGGAATTGAT+GGG | 0.603441 | 4.4:-32804150 | MS.gene006555:CDS |
| TGACGACAATTATGTTCTCA+AGG | 0.607641 | 4.4:-32800506 | MS.gene006555:CDS |
| TCCACTTCCACAGTTGCATG+AGG | 0.608745 | 4.4:+32800861 | None:intergenic |
| GTTACACACAATATTGCGGA+TGG | 0.615879 | 4.4:-32800442 | MS.gene006555:CDS |
| GGGAGTGGAGGTGATGTCGG+AGG | 0.628434 | 4.4:+32800346 | None:intergenic |
| TCAATCGTCCGTGGACGAAG+AGG | 0.631369 | 4.4:-32804166 | MS.gene006555:CDS |
| CAATGTTACACACAATATTG+CGG | 0.641067 | 4.4:-32800446 | MS.gene006555:CDS |
| TCAGGAAATCCTCCCAGTGG+AGG | 0.644133 | 4.4:-32801421 | MS.gene006555:CDS |
| GACACGTCCTCATGCAACTG+TGG | 0.649899 | 4.4:-32800868 | MS.gene006555:CDS |
| TAGCCGGAGTGAGCAGACCA+CGG | 0.651050 | 4.4:-32804067 | MS.gene006555:CDS |
| TGTGTAACATTGTCACTCTG+TGG | 0.651492 | 4.4:+32800457 | None:intergenic |
| ATCACCGGCGGCTGTCCCCG+TGG | 0.656058 | 4.4:+32804050 | None:intergenic |
| ACTCCGGCTAGACGGTAACC+CGG | 0.657214 | 4.4:+32804080 | None:intergenic |
| AGGAAGAACAACTTACAATG+AGG | 0.663086 | 4.4:-32802599 | MS.gene006555:intron |
| GAGCATCATAGACCCTTCGA+CGG | 0.678223 | 4.4:+32801918 | None:intergenic |
| GGTAAAGATACACCTCCACT+GGG | 0.679973 | 4.4:+32801409 | None:intergenic |
| AGCTCAGGAAATCCTCCCAG+TGG | 0.682103 | 4.4:-32801424 | MS.gene006555:CDS |
| GCAGCCGCATCAATCGTCCG+TGG | 0.683605 | 4.4:-32804175 | MS.gene006555:CDS |
| AGATAAGAAAACCTGATCAG+GGG | 0.686331 | 4.4:+32802058 | None:intergenic |
| ATAGGTGGCAGATGAACTTG+TGG | 0.689893 | 4.4:-32802114 | MS.gene006555:intron |
| AACATGTTTGAAACTGACTG+AGG | 0.695881 | 4.4:+32800376 | None:intergenic |
| TCGTCCACGGACGATTGATG+CGG | 0.696336 | 4.4:+32804171 | None:intergenic |
| GAGAGCAGCGTTATCACCGG+CGG | 0.697043 | 4.4:+32804038 | None:intergenic |
| GGGGTGATAAGAATGGAAGA+GGG | 0.716134 | 4.4:-32803155 | MS.gene006555:CDS |
| AAAGATACACCTCCACTGGG+AGG | 0.724160 | 4.4:+32801412 | None:intergenic |
| ATATCACTCAGACTGGTACG+AGG | 0.734989 | 4.4:+32801830 | None:intergenic |
| GCCGGAGTGAGCAGACCACG+GGG | 0.739516 | 4.4:-32804065 | MS.gene006555:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATTTTTTTTTTT+AGG | + | chr4.4:32802363-32802344 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTAAATAT+AGG | - | chr4.4:32802360-32802379 | MS.gene006555:intron | 0.0% |
| !! | AAGTATAGATATAAATAAAA+AGG | + | chr4.4:32801196-32801215 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTAGGAAATA+AGG | + | chr4.4:32802334-32802353 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTAAATATAGG+TGG | - | chr4.4:32802363-32802382 | MS.gene006555:intron | 10.0% |
| !! | AAATTAATTAGTGGTTAATT+TGG | - | chr4.4:32801053-32801072 | MS.gene006555:intron | 15.0% |
| !! | CTATTTAAAAAACTAATTGA+AGG | + | chr4.4:32802144-32802163 | None:intergenic | 15.0% |
| !! | TTATTTATATCTATACTTTG+TGG | - | chr4.4:32801198-32801217 | MS.gene006555:intron | 15.0% |
| !!! | AAATAATTTTCCCTTTTTTT+GGG | - | chr4.4:32803343-32803362 | MS.gene006555:intron | 15.0% |
| !!! | ATCTTATGAACTTATTTTTT+TGG | - | chr4.4:32802509-32802528 | MS.gene006555:intron | 15.0% |
| !!! | CTTCAATTAGTTTTTTAAAT+AGG | - | chr4.4:32802142-32802161 | MS.gene006555:intron | 15.0% |
| !!! | TCTTATGAACTTATTTTTTT+GGG | - | chr4.4:32802510-32802529 | MS.gene006555:intron | 15.0% |
| !! | AAAAAAGAAATACAATGGAA+GGG | - | chr4.4:32802635-32802654 | MS.gene006555:intron | 20.0% |
| !! | AATTAACCACTAATTAATTC+AGG | + | chr4.4:32800952-32800971 | None:intergenic | 20.0% |
| !! | AATTTAAAAAATAGCAATCC+AGG | + | chr4.4:32802913-32802932 | None:intergenic | 20.0% |
| !! | AGGATAAAAAAGAAATACAA+TGG | - | chr4.4:32802630-32802649 | MS.gene006555:intron | 20.0% |
| !! | ATGTAATATATTATCATCCA+AGG | + | chr4.4:32803193-32803212 | None:intergenic | 20.0% |
| !! | GAATTAATTAGTGGTTAATT+TGG | - | chr4.4:32800952-32800971 | MS.gene006555:intron | 20.0% |
| !! | TAAAAAAGAAATACAATGGA+AGG | - | chr4.4:32802634-32802653 | MS.gene006555:intron | 20.0% |
| !! | TAAAAAGTTAAAGATCAAAG+TGG | + | chr4.4:32801407-32801426 | None:intergenic | 20.0% |
| !! | TAAGAATCAATCGAAAATAA+TGG | + | chr4.4:32801268-32801287 | None:intergenic | 20.0% |
| !! | TATAAATCCAATTTCATGTT+TGG | - | chr4.4:32800606-32800625 | MS.gene006555:intron | 20.0% |
| !! | TTAAAACCTGAATTAATTAG+TGG | - | chr4.4:32800943-32800962 | MS.gene006555:intron | 20.0% |
| !! | TTCATTGCAAAATTAATTAG+TGG | - | chr4.4:32801044-32801063 | MS.gene006555:intron | 20.0% |
| !! | TTCTATAAATACATACATGT+TGG | - | chr4.4:32802066-32802085 | MS.gene006555:intron | 20.0% |
| !! | TTTATTCAAGGTCTAAAAAA+TGG | - | chr4.4:32800788-32800807 | MS.gene006555:intron | 20.0% |
| !!! | AAAAAACTGGTTTAAAGTAA+AGG | + | chr4.4:32801924-32801943 | None:intergenic | 20.0% |
| !!! | AAGATTTTCAATTAGTGAAA+AGG | - | chr4.4:32800713-32800732 | MS.gene006555:intron | 20.0% |
| !!! | CTTATGAACTTATTTTTTTG+GGG | - | chr4.4:32802511-32802530 | MS.gene006555:intron | 20.0% |
| !!! | GAAATAATTTTCCCTTTTTT+TGG | - | chr4.4:32803342-32803361 | MS.gene006555:intron | 20.0% |
| !!! | TATTTGCTATTTACACATTA+AGG | - | chr4.4:32802476-32802495 | MS.gene006555:intron | 20.0% |
| !!! | TTGTATTTCTTTTTTATCCT+TGG | + | chr4.4:32802630-32802649 | None:intergenic | 20.0% |
| !!! | TTGTTCATTTTGATTTCAAT+AGG | - | chr4.4:32803674-32803693 | MS.gene006555:intron | 20.0% |
| ! | AAATCAACAGTAAATTAGAG+AGG | + | chr4.4:32801844-32801863 | None:intergenic | 25.0% |
| ! | AATAAAAACAGAGAATTGAC+AGG | + | chr4.4:32801234-32801253 | None:intergenic | 25.0% |
| ! | AATCAACAGTAAATTAGAGA+GGG | + | chr4.4:32801843-32801862 | None:intergenic | 25.0% |
| ! | AATGAACAATTATATAGCTC+AGG | - | chr4.4:32803053-32803072 | MS.gene006555:intron | 25.0% |
| ! | AATTGAACAACAATTTCTAC+TGG | + | chr4.4:32803167-32803186 | None:intergenic | 25.0% |
| ! | AGAGAGTAAACATAAATAAG+TGG | + | chr4.4:32803942-32803961 | None:intergenic | 25.0% |
| ! | ATAACATAGACCCATAAAAT+AGG | + | chr4.4:32803460-32803479 | None:intergenic | 25.0% |
| ! | ATATTGAAGAACTAAAGGTT+TGG | - | chr4.4:32802681-32802700 | MS.gene006555:intron | 25.0% |
| ! | ATTACATGAACTTAAGTAGT+TGG | - | chr4.4:32803237-32803256 | MS.gene006555:intron | 25.0% |
| ! | ATTGTTCATTTCGTTGAATA+AGG | + | chr4.4:32803043-32803062 | None:intergenic | 25.0% |
| ! | CTTTATGATACCACAAAATT+AGG | + | chr4.4:32803785-32803804 | None:intergenic | 25.0% |
| ! | GATAAATCACAACATGAAAT+GGG | + | chr4.4:32802267-32802286 | None:intergenic | 25.0% |
| ! | GGTATTAAATCAATTAGAGT+GGG | + | chr4.4:32802880-32802899 | None:intergenic | 25.0% |
| ! | GTAGAGAAAATTGTCAAAAA+TGG | + | chr4.4:32801804-32801823 | None:intergenic | 25.0% |
| ! | TAAACATTTGTGTAAAGGTT+TGG | - | chr4.4:32801498-32801517 | MS.gene006555:intron | 25.0% |
| ! | TAGTATATAGCAGTAACTTT+CGG | + | chr4.4:32803390-32803409 | None:intergenic | 25.0% |
| ! | TATTATTGCTACAAGTTTGT+AGG | - | chr4.4:32803008-32803027 | MS.gene006555:intron | 25.0% |
| ! | TGAAAAGGAAAATGATATAC+TGG | - | chr4.4:32800728-32800747 | MS.gene006555:intron | 25.0% |
| ! | TGACATAAACATTTGTGTAA+AGG | - | chr4.4:32801493-32801512 | MS.gene006555:intron | 25.0% |
| ! | TGATAAATCACAACATGAAA+TGG | + | chr4.4:32802268-32802287 | None:intergenic | 25.0% |
| !! | ATTTTATGGGTCTATGTTAT+GGG | - | chr4.4:32803460-32803479 | MS.gene006555:intron | 25.0% |
| !! | CAAATAAGTTGTTTCAAACA+AGG | + | chr4.4:32801467-32801486 | None:intergenic | 25.0% |
| !! | CACTCTAATTGATTTAATAC+CGG | - | chr4.4:32802879-32802898 | MS.gene006555:intron | 25.0% |
| !! | TATTTTATGGGTCTATGTTA+TGG | - | chr4.4:32803459-32803478 | MS.gene006555:intron | 25.0% |
| !! | TGTATCTTTACCTTTTATTC+TGG | - | chr4.4:32803094-32803113 | MS.gene006555:intron | 25.0% |
| !!! | AAAATTTGTTGACAATTCTC+CGG | - | chr4.4:32801010-32801029 | MS.gene006555:intron | 25.0% |
| !!! | AATAAAAAGGTTTTGAATCG+TGG | + | chr4.4:32801183-32801202 | None:intergenic | 25.0% |
| !!! | AGACTTTATATTTTAGAACG+TGG | + | chr4.4:32802024-32802043 | None:intergenic | 25.0% |
| !!! | ATGCGTTCAATTTTGATTTA+GGG | - | chr4.4:32800678-32800697 | MS.gene006555:intron | 25.0% |
| !!! | ATTTTCAAGTAGATAAGTCT+TGG | - | chr4.4:32803863-32803882 | MS.gene006555:intron | 25.0% |
| !!! | GACAGAGATTTATTTTATTC+AGG | - | chr4.4:32801778-32801797 | MS.gene006555:intron | 25.0% |
| !!! | TGACAATTTTCTCTACTTTT+TGG | - | chr4.4:32801808-32801827 | MS.gene006555:intron | 25.0% |
| !!! | TTTTCAAGTAGATAAGTCTT+GGG | - | chr4.4:32803864-32803883 | MS.gene006555:intron | 25.0% |
| AACATAGTGAACAAACGTTA+TGG | - | chr4.4:32800841-32800860 | MS.gene006555:CDS | 30.0% | |
| AACCTTTCATACTAAATTGC+CGG | + | chr4.4:32801365-32801384 | None:intergenic | 30.0% | |
| AAGATAAGAAAACCTGATCA+GGG | + | chr4.4:32802438-32802457 | None:intergenic | 30.0% | |
| AATCAAATATCAGCACCAAT+AGG | + | chr4.4:32803580-32803599 | None:intergenic | 30.0% | |
| AGCTAAACCAAACATGAAAT+TGG | + | chr4.4:32800616-32800635 | None:intergenic | 30.0% | |
| AGGAAGTCTAAACATTAAGA+CGG | + | chr4.4:32803765-32803784 | None:intergenic | 30.0% | |
| AGTTACTGCTATATACTAGA+TGG | - | chr4.4:32803392-32803411 | MS.gene006555:intron | 30.0% | |
| ATCAACAGTAAATTAGAGAG+GGG | + | chr4.4:32801842-32801861 | None:intergenic | 30.0% | |
| CAAACAAATGCCCAAAAAAA+GGG | + | chr4.4:32803356-32803375 | None:intergenic | 30.0% | |
| CAATGTTACACACAATATTG+CGG | - | chr4.4:32804046-32804065 | MS.gene006555:CDS | 30.0% | |
| CAGTTTCAAACATGTTAGTT+AGG | - | chr4.4:32804123-32804142 | MS.gene006555:CDS | 30.0% | |
| CCTTGAATAAAATGTACCAT+TGG | + | chr4.4:32800779-32800798 | None:intergenic | 30.0% | |
| CGGTATTAAATCAATTAGAG+TGG | + | chr4.4:32802881-32802900 | None:intergenic | 30.0% | |
| GAGTGATATTGAAGAACTAA+AGG | - | chr4.4:32802676-32802695 | MS.gene006555:intron | 30.0% | |
| GGCTATGAATATTATTTCCA+AGG | - | chr4.4:32802610-32802629 | MS.gene006555:CDS | 30.0% | |
| GTCTATGTTATGGGTTTATA+CGG | - | chr4.4:32803469-32803488 | MS.gene006555:intron | 30.0% | |
| TATACCTGAACCAGAATAAA+AGG | + | chr4.4:32803107-32803126 | None:intergenic | 30.0% | |
| TCTAAAAAATGGTCCGTTAT+AGG | - | chr4.4:32800799-32800818 | MS.gene006555:intron | 30.0% | |
| TTGTTCTATACCAATTACCA+TGG | + | chr4.4:32800873-32800892 | None:intergenic | 30.0% | |
| ! | ATTGTTGTTCAATTATGCCT+TGG | - | chr4.4:32803173-32803192 | MS.gene006555:CDS | 30.0% |
| ! | ATTTCATGTTTGGTTTAGCT+TGG | - | chr4.4:32800616-32800635 | MS.gene006555:intron | 30.0% |
| ! | CAGATAAATTTTCCAACACA+GGG | + | chr4.4:32803919-32803938 | None:intergenic | 30.0% |
| ! | CCAATGGTACATTTTATTCA+AGG | - | chr4.4:32800776-32800795 | MS.gene006555:intron | 30.0% |
| ! | CTTTTAACGTGGTAAAAAAC+TGG | + | chr4.4:32801937-32801956 | None:intergenic | 30.0% |
| ! | GCAATGAATTTTTCATAGAC+CGG | + | chr4.4:32801032-32801051 | None:intergenic | 30.0% |
| ! | GTTTAGACTTCCTAATTTTG+TGG | - | chr4.4:32803772-32803791 | MS.gene006555:intron | 30.0% |
| ! | GTTTTGTCAATGATTAAGCA+CGG | - | chr4.4:32802164-32802183 | MS.gene006555:intron | 30.0% |
| ! | TAATTATTAGCCTCAGAAAC+TGG | - | chr4.4:32802215-32802234 | MS.gene006555:intron | 30.0% |
| ! | TTTCATGTTTGGTTTAGCTT+GGG | - | chr4.4:32800617-32800636 | MS.gene006555:intron | 30.0% |
| !! | GTTATGATGTGATTAGCTTT+AGG | - | chr4.4:32803731-32803750 | MS.gene006555:intron | 30.0% |
| !!! | CAATTTTCTCTACTTTTTGG+TGG | - | chr4.4:32801811-32801830 | MS.gene006555:intron | 30.0% |
| !!! | CATGCGTTCAATTTTGATTT+AGG | - | chr4.4:32800677-32800696 | MS.gene006555:intron | 30.0% |
| !!! | TTTACCTTTTATTCTGGTTC+AGG | - | chr4.4:32803100-32803119 | MS.gene006555:intron | 30.0% |
| AACTCAGATAATGACAAGCA+AGG | + | chr4.4:32803714-32803733 | None:intergenic | 35.0% | |
| AATCACAACATGAAATGGGT+AGG | + | chr4.4:32802263-32802282 | None:intergenic | 35.0% | |
| ACTCTTGCCTTTAATATTCC+AGG | + | chr4.4:32804170-32804189 | None:intergenic | 35.0% | |
| AGAGTTTATGCATAAGCTCT+TGG | - | chr4.4:32801629-32801648 | MS.gene006555:intron | 35.0% | |
| AGATAAGAAAACCTGATCAG+GGG | + | chr4.4:32802437-32802456 | None:intergenic | 35.0% | |
| AGGAAGAACAACTTACAATG+AGG | - | chr4.4:32801893-32801912 | MS.gene006555:CDS | 35.0% | |
| ATGAACTTAAGTAGTTGGCT+TGG | - | chr4.4:32803242-32803261 | MS.gene006555:intron | 35.0% | |
| ATTAAATAGACACAGCGTCT+TGG | - | chr4.4:32802789-32802808 | MS.gene006555:intron | 35.0% | |
| ATTGGAAGTAATGTATAGCC+AGG | + | chr4.4:32800761-32800780 | None:intergenic | 35.0% | |
| CAATTATGTTCTCAAGGCAA+TGG | - | chr4.4:32803992-32804011 | MS.gene006555:CDS | 35.0% | |
| CCAAACAAATGCCCAAAAAA+AGG | + | chr4.4:32803357-32803376 | None:intergenic | 35.0% | |
| CGCTAAGAATTTCATGACTT+TGG | + | chr4.4:32801157-32801176 | None:intergenic | 35.0% | |
| CGCTATAGCATTTATTGAGT+TGG | + | chr4.4:32801995-32802014 | None:intergenic | 35.0% | |
| CTCAATCATGGATAGCAAAT+CGG | - | chr4.4:32801964-32801983 | MS.gene006555:intron | 35.0% | |
| CTCTTGCCTTTAATATTCCA+GGG | + | chr4.4:32804169-32804188 | None:intergenic | 35.0% | |
| CTGGACAAAATGACCAAAAA+AGG | + | chr4.4:32803148-32803167 | None:intergenic | 35.0% | |
| GAAAATAGATCTTATCCAGC+TGG | - | chr4.4:32803304-32803323 | MS.gene006555:intron | 35.0% | |
| GAAACTAGTGTATCCTATTG+TGG | - | chr4.4:32803816-32803835 | MS.gene006555:intron | 35.0% | |
| GAACAACTTACAATGAGGTT+AGG | - | chr4.4:32801898-32801917 | MS.gene006555:CDS | 35.0% | |
| GAAGATAAGAAAACCTGATC+AGG | + | chr4.4:32802439-32802458 | None:intergenic | 35.0% | |
| GAATAATATGCTCATCCTGT+TGG | - | chr4.4:32803538-32803557 | MS.gene006555:intron | 35.0% | |
| GTACTGCATAAACATTGAGT+GGG | + | chr4.4:32801291-32801310 | None:intergenic | 35.0% | |
| GTATCAGACACTACCTATAA+CGG | + | chr4.4:32800815-32800834 | None:intergenic | 35.0% | |
| GTTATAGGTAGTGTCTGATA+CGG | - | chr4.4:32800814-32800833 | MS.gene006555:intron | 35.0% | |
| TAGTTAATTCACTAACCAGC+TGG | + | chr4.4:32803322-32803341 | None:intergenic | 35.0% | |
| TGACGACAATTATGTTCTCA+AGG | - | chr4.4:32803986-32804005 | MS.gene006555:CDS | 35.0% | |
| TGGCTATACATTACTTCCAA+TGG | - | chr4.4:32800760-32800779 | MS.gene006555:intron | 35.0% | |
| TGTGAGAAGGTAGAAAGTAA+AGG | - | chr4.4:32801873-32801892 | MS.gene006555:CDS | 35.0% | |
| TTAAATAGACACAGCGTCTT+GGG | - | chr4.4:32802790-32802809 | MS.gene006555:intron | 35.0% | |
| TTAAATCAATTAGAGTGGGC+TGG | + | chr4.4:32802876-32802895 | None:intergenic | 35.0% | |
| TTAGATCAGAACATCACTGA+AGG | + | chr4.4:32802751-32802770 | None:intergenic | 35.0% | |
| TTCTTCAATATCACTCAGAC+TGG | + | chr4.4:32802672-32802691 | None:intergenic | 35.0% | |
| TTTCATGACTTTGGCTGTTA+CGG | + | chr4.4:32801148-32801167 | None:intergenic | 35.0% | |
| ! | AAAAGCACAGTTCTCAATCA+TGG | - | chr4.4:32801952-32801971 | MS.gene006555:intron | 35.0% |
| ! | AACATGTTTGAAACTGACTG+AGG | + | chr4.4:32804119-32804138 | None:intergenic | 35.0% |
| ! | AATCTAGAAAGTGCAGAGAT+TGG | + | chr4.4:32800547-32800566 | None:intergenic | 35.0% |
| ! | ACTCTGGTTGCCTATTTTAT+GGG | - | chr4.4:32803447-32803466 | MS.gene006555:intron | 35.0% |
| ! | ATACACTAGTTTCCACTTTC+CGG | + | chr4.4:32803809-32803828 | None:intergenic | 35.0% |
| ! | GAATTTTCTGATCCAAGCAA+TGG | - | chr4.4:32802403-32802422 | MS.gene006555:intron | 35.0% |
| ! | GCAGATAAATTTTCCAACAC+AGG | + | chr4.4:32803920-32803939 | None:intergenic | 35.0% |
| ! | TACTCTGGTTGCCTATTTTA+TGG | - | chr4.4:32803446-32803465 | MS.gene006555:intron | 35.0% |
| ! | TCTGAGGCTAATAATTACCA+CGG | + | chr4.4:32802212-32802231 | None:intergenic | 35.0% |
| ! | TGATGCTCTGAATGTTCTTA+TGG | - | chr4.4:32802589-32802608 | MS.gene006555:intron | 35.0% |
| ! | TTGTTTAGTTCAGCTTACTC+TGG | - | chr4.4:32803431-32803450 | MS.gene006555:intron | 35.0% |
| ! | TTTTGTGGTATCATAAAGCC+CGG | - | chr4.4:32803787-32803806 | MS.gene006555:intron | 35.0% |
| !!! | ATCTCAGTATCTGCCTTTTT+TGG | - | chr4.4:32803132-32803151 | MS.gene006555:intron | 35.0% |
| !!! | ATTAAGCACGGTGGTTTTTT+GGG | - | chr4.4:32802176-32802195 | MS.gene006555:intron | 35.0% |
| !!! | CCTTTTTTTGGGCATTTGTT+TGG | - | chr4.4:32803354-32803373 | MS.gene006555:intron | 35.0% |
| AAAGGCAGATACTGAGATGA+TGG | + | chr4.4:32803130-32803149 | None:intergenic | 40.0% | |
| AATTGTGAAACTTGCAGCAG+TGG | - | chr4.4:32801740-32801759 | MS.gene006555:intron | 40.0% | |
| ACTCAGCATTCAGCATACTA+AGG | + | chr4.4:32801709-32801728 | None:intergenic | 40.0% | |
| AGGATAAGTGCAACTTTGCA+AGG | + | chr4.4:32801447-32801466 | None:intergenic | 40.0% | |
| ATAAGTCTTGGGAGCTAGTT+AGG | - | chr4.4:32803875-32803894 | MS.gene006555:intron | 40.0% | |
| ATGAGAAAAACATCCGTCGA+AGG | - | chr4.4:32802561-32802580 | MS.gene006555:intron | 40.0% | |
| CTCAGCATTCAGCATACTAA+GGG | + | chr4.4:32801708-32801727 | None:intergenic | 40.0% | |
| CTCCGGCAATTTAGTATGAA+AGG | - | chr4.4:32801360-32801379 | MS.gene006555:intron | 40.0% | |
| GGCTTAGGAGTAGAATTGAA+AGG | - | chr4.4:32802811-32802830 | MS.gene006555:intron | 40.0% | |
| GGTACTGCATAAACATTGAG+TGG | + | chr4.4:32801292-32801311 | None:intergenic | 40.0% | |
| GTACCAAGAAGAAAAAGCGA+CGG | - | chr4.4:32801307-32801326 | MS.gene006555:intron | 40.0% | |
| GTGAACAAACGTTATGGAAG+CGG | - | chr4.4:32800847-32800866 | MS.gene006555:CDS | 40.0% | |
| GTTACACACAATATTGCGGA+TGG | - | chr4.4:32804050-32804069 | MS.gene006555:CDS | 40.0% | |
| TAAGTCTTGGGAGCTAGTTA+GGG | - | chr4.4:32803876-32803895 | MS.gene006555:intron | 40.0% | |
| TACCAAGAAGAAAAAGCGAC+GGG | - | chr4.4:32801308-32801327 | MS.gene006555:intron | 40.0% | |
| TCAGCATTCAGCATACTAAG+GGG | + | chr4.4:32801707-32801726 | None:intergenic | 40.0% | |
| TCCACTCCCTGGAATATTAA+AGG | - | chr4.4:32804160-32804179 | MS.gene006555:CDS | 40.0% | |
| TCCTATTGTGGTCAAACACT+CGG | - | chr4.4:32803828-32803847 | MS.gene006555:intron | 40.0% | |
| TGAGAAAAACATCCGTCGAA+GGG | - | chr4.4:32802562-32802581 | MS.gene006555:intron | 40.0% | |
| TGATATACTGGACTTGAACC+TGG | - | chr4.4:32800740-32800759 | MS.gene006555:intron | 40.0% | |
| TGCTTCGATAAGCTATTGTG+AGG | + | chr4.4:32801561-32801580 | None:intergenic | 40.0% | |
| TGTGTAACATTGTCACTCTG+TGG | + | chr4.4:32804038-32804057 | None:intergenic | 40.0% | |
| TTAATACCGGAATGCTAACC+TGG | - | chr4.4:32802892-32802911 | MS.gene006555:intron | 40.0% | |
| TTGTCAATGATTAAGCACGG+TGG | - | chr4.4:32802167-32802186 | MS.gene006555:intron | 40.0% | |
| TTTAATATTCCAGGGAGTGG+AGG | + | chr4.4:32804161-32804180 | None:intergenic | 40.0% | |
| ! | ATTTTCTGCAGTGTGTGAGA+AGG | - | chr4.4:32801860-32801879 | MS.gene006555:CDS | 40.0% |
| ! | TACACTAGTTTCCACTTTCC+GGG | + | chr4.4:32803808-32803827 | None:intergenic | 40.0% |
| ! | TGAGAACTGTGCTTTTAACG+TGG | + | chr4.4:32801948-32801967 | None:intergenic | 40.0% |
| ! | TTTTCTGATCCAAGCAATGG+TGG | - | chr4.4:32802406-32802425 | MS.gene006555:intron | 40.0% |
| !! | ACTTTCTAAGATCCATGACC+AGG | + | chr4.4:32803501-32803520 | None:intergenic | 40.0% |
| !! | GTTCTCAAGGCAATGGATTT+TGG | - | chr4.4:32803999-32804018 | MS.gene006555:CDS | 40.0% |
| !! | TCAAGGCAATGGATTTTGGT+GGG | - | chr4.4:32804003-32804022 | MS.gene006555:CDS | 40.0% |
| !! | TTTAGCTTGGGATGAGATTC+TGG | - | chr4.4:32800629-32800648 | MS.gene006555:intron | 40.0% |
| !!! | GATTAAGCACGGTGGTTTTT+TGG | - | chr4.4:32802175-32802194 | MS.gene006555:intron | 40.0% |
| AAGTCCACTACCAGTTTCTG+AGG | + | chr4.4:32802228-32802247 | None:intergenic | 45.0% | |
| ACAACATGAAATGGGTAGGC+AGG | + | chr4.4:32802259-32802278 | None:intergenic | 45.0% | |
| ACACAATATTGCGGATGGAG+GGG | - | chr4.4:32804055-32804074 | MS.gene006555:CDS | 45.0% | |
| ACACACAATATTGCGGATGG+AGG | - | chr4.4:32804053-32804072 | MS.gene006555:CDS | 45.0% | |
| AGCAATCCAGGTTAGCATTC+CGG | + | chr4.4:32802901-32802920 | None:intergenic | 45.0% | |
| AGGTAAAGATACACCTCCAC+TGG | + | chr4.4:32803087-32803106 | None:intergenic | 45.0% | |
| ATAAGAATGGAAGAGGGCTC+CGG | - | chr4.4:32801343-32801362 | MS.gene006555:intron | 45.0% | |
| ATACGGAGAATTCCTGGTCA+TGG | - | chr4.4:32803486-32803505 | MS.gene006555:intron | 45.0% | |
| ATAGGTGGCAGATGAACTTG+TGG | - | chr4.4:32802378-32802397 | MS.gene006555:intron | 45.0% | |
| ATATCACTCAGACTGGTACG+AGG | + | chr4.4:32802665-32802684 | None:intergenic | 45.0% | |
| CACACAATATTGCGGATGGA+GGG | - | chr4.4:32804054-32804073 | MS.gene006555:CDS | 45.0% | |
| CTGTTACGGATGTTGCGTTA+TGG | + | chr4.4:32801134-32801153 | None:intergenic | 45.0% | |
| GAAGAGGACGAGGAATTGAT+GGG | - | chr4.4:32800342-32800361 | MS.gene006555:CDS | 45.0% | |
| GCCTTTAATATTCCAGGGAG+TGG | + | chr4.4:32804164-32804183 | None:intergenic | 45.0% | |
| GGGGTGATAAGAATGGAAGA+GGG | - | chr4.4:32801337-32801356 | MS.gene006555:intron | 45.0% | |
| GGGTTTATACGGAGAATTCC+TGG | - | chr4.4:32803480-32803499 | MS.gene006555:intron | 45.0% | |
| GGTAAAGATACACCTCCACT+GGG | + | chr4.4:32803086-32803105 | None:intergenic | 45.0% | |
| GTATCATAAAGCCCGGAAAG+TGG | - | chr4.4:32803794-32803813 | MS.gene006555:intron | 45.0% | |
| GTCAGGCATGTATCAATCAC+AGG | - | chr4.4:32804091-32804110 | MS.gene006555:CDS | 45.0% | |
| TCCGAGTGTTTGACCACAAT+AGG | + | chr4.4:32803832-32803851 | None:intergenic | 45.0% | |
| TTAGCCTCAGAAACTGGTAG+TGG | - | chr4.4:32802221-32802240 | MS.gene006555:intron | 45.0% | |
| TTTGAGAGCAGCGTTATCAC+CGG | + | chr4.4:32800460-32800479 | None:intergenic | 45.0% | |
| ! | CTGTATCTTTTCTCTCTGCG+TGG | - | chr4.4:32802714-32802733 | MS.gene006555:intron | 45.0% |
| ! | GGATGTTGCGTTATGGATTG+TGG | + | chr4.4:32801127-32801146 | None:intergenic | 45.0% |
| ! | GTTATGGATTGTGGTCGTTG+CGG | + | chr4.4:32801118-32801137 | None:intergenic | 45.0% |
| !! | AAGGCAATGGATTTTGGTGG+GGG | - | chr4.4:32804005-32804024 | MS.gene006555:CDS | 45.0% |
| !! | CAAGGCAATGGATTTTGGTG+GGG | - | chr4.4:32804004-32804023 | MS.gene006555:CDS | 45.0% |
| !! | CTCAAGGCAATGGATTTTGG+TGG | - | chr4.4:32804002-32804021 | MS.gene006555:CDS | 45.0% |
| !!! | TTTTGGGATCAAGTTGTCCG+TGG | - | chr4.4:32802192-32802211 | MS.gene006555:intron | 45.0% |
| !! | AAAAAAAAATATAAGTAATA+CGG | + | chr4.4:32802296-32802315 | None:intergenic | 5.0% |
| !!! | TTTAATCAAATTTATATTTT+TGG | + | chr4.4:32802775-32802794 | None:intergenic | 5.0% |
| AAACGTTATGGAAGCGGCCA+TGG | - | chr4.4:32800853-32800872 | MS.gene006555:CDS | 50.0% | |
| AAAGATACACCTCCACTGGG+AGG | + | chr4.4:32803083-32803102 | None:intergenic | 50.0% | |
| AAGGAAAGCAGCCTATCTGC+AGG | - | chr4.4:32802830-32802849 | MS.gene006555:intron | 50.0% | |
| AATATTGCGGATGGAGGGGA+AGG | - | chr4.4:32804059-32804078 | MS.gene006555:CDS | 50.0% | |
| ATGGAAGCGGCCATGGTAAT+TGG | - | chr4.4:32800860-32800879 | MS.gene006555:CDS | 50.0% | |
| CGAAGAGGACGAGGAATTGA+TGG | - | chr4.4:32800341-32800360 | MS.gene006555:CDS | 50.0% | |
| GAGCATCATAGACCCTTCGA+CGG | + | chr4.4:32802577-32802596 | None:intergenic | 50.0% | |
| GCTGTTGGGGGTGATAAGAA+TGG | - | chr4.4:32801330-32801349 | MS.gene006555:intron | 50.0% | |
| GGGGGTGATAAGAATGGAAG+AGG | - | chr4.4:32801336-32801355 | MS.gene006555:intron | 50.0% | |
| GGTTGTGGAACTACGCTTTC+CGG | - | chr4.4:32800363-32800382 | MS.gene006555:CDS | 50.0% | |
| TCCACTTCCACAGTTGCATG+AGG | + | chr4.4:32803634-32803653 | None:intergenic | 50.0% | |
| TCCTCATGCAACTGTGGAAG+TGG | - | chr4.4:32803630-32803649 | MS.gene006555:intron | 50.0% | |
| TGCTGTGATGTGGCTCCTAT+TGG | - | chr4.4:32803562-32803581 | MS.gene006555:intron | 50.0% | |
| TTGTCGTCATGCAGCTCGAA+AGG | + | chr4.4:32803975-32803994 | None:intergenic | 50.0% | |
| ! | TGGTGCTTTTGTCCCTGTGT+TGG | - | chr4.4:32803904-32803923 | MS.gene006555:intron | 50.0% |
| !! | AAGAAAAAGCGACGGGCTGT+TGG | - | chr4.4:32801315-32801334 | MS.gene006555:intron | 50.0% |
| !! | AGAAAAAGCGACGGGCTGTT+GGG | - | chr4.4:32801316-32801335 | MS.gene006555:intron | 50.0% |
| !! | GACGAGGAATTGATGGGTTG+TGG | - | chr4.4:32800348-32800367 | MS.gene006555:CDS | 50.0% |
| !!! | AGCCCGTCGCTTTTTCTTCT+TGG | + | chr4.4:32801313-32801332 | None:intergenic | 50.0% |
| ACTACGCTTTCCGGCCAATC+AGG | - | chr4.4:32800372-32800391 | MS.gene006555:CDS | 55.0% | |
| AGACACAGCGTCTTGGGCTT+AGG | - | chr4.4:32802796-32802815 | MS.gene006555:intron | 55.0% | |
| AGACTCACGCAACTACTGCC+TGG | + | chr4.4:32800521-32800540 | None:intergenic | 55.0% | |
| AGCTCAGGAAATCCTCCCAG+TGG | - | chr4.4:32803068-32803087 | MS.gene006555:intron | 55.0% | |
| CATGAAATGGGTAGGCAGGC+AGG | + | chr4.4:32802255-32802274 | None:intergenic | 55.0% | |
| CTGCTCAAGCTCCTGCAGAT+AGG | + | chr4.4:32802844-32802863 | None:intergenic | 55.0% | |
| GACACGTCCTCATGCAACTG+TGG | - | chr4.4:32803624-32803643 | MS.gene006555:intron | 55.0% | |
| GACTCACGCAACTACTGCCT+GGG | + | chr4.4:32800520-32800539 | None:intergenic | 55.0% | |
| GGGGACAAACCACCATTGCT+TGG | + | chr4.4:32802418-32802437 | None:intergenic | 55.0% | |
| GTCTTGGGAGCTAGTTAGGG+TGG | - | chr4.4:32803879-32803898 | MS.gene006555:intron | 55.0% | |
| TCAATCGTCCGTGGACGAAG+AGG | - | chr4.4:32800326-32800345 | MS.gene006555:CDS | 55.0% | |
| TCAGGAAATCCTCCCAGTGG+AGG | - | chr4.4:32803071-32803090 | MS.gene006555:intron | 55.0% | |
| TCGTCCACGGACGATTGATG+CGG | + | chr4.4:32800324-32800343 | None:intergenic | 55.0% | |
| TTCCTCGTCCTCTTCGTCCA+CGG | + | chr4.4:32800337-32800356 | None:intergenic | 55.0% | |
| ! | GGGGAAGGTTCTAGCATGTC+AGG | - | chr4.4:32804074-32804093 | MS.gene006555:CDS | 55.0% |
| ! | TCCTGCTGGTTGAGCCTGAT+TGG | + | chr4.4:32800389-32800408 | None:intergenic | 55.0% |
| ! | TCCTGTTGGCTGCTGTGATG+TGG | - | chr4.4:32803552-32803571 | MS.gene006555:intron | 55.0% |
| ! | TGATGACGATGCTGCTTCCC+AGG | - | chr4.4:32800500-32800519 | MS.gene006555:CDS | 55.0% |
| ! | TGGTGGTTTGTCCCCTGATC+AGG | - | chr4.4:32802423-32802442 | MS.gene006555:intron | 55.0% |
| !! | AAAAAGCGACGGGCTGTTGG+GGG | - | chr4.4:32801318-32801337 | MS.gene006555:intron | 55.0% |
| !! | GAAAAAGCGACGGGCTGTTG+GGG | - | chr4.4:32801317-32801336 | MS.gene006555:intron | 55.0% |
| ACTCCGGCTAGACGGTAACC+CGG | + | chr4.4:32800415-32800434 | None:intergenic | 60.0% | |
| CCAGGGAGTGGAGGTGATGT+CGG | + | chr4.4:32804152-32804171 | None:intergenic | 60.0% | |
| GAGAGCAGCGTTATCACCGG+CGG | + | chr4.4:32800457-32800476 | None:intergenic | 60.0% | |
| GCCAATCAGGCTCAACCAGC+AGG | - | chr4.4:32800385-32800404 | MS.gene006555:CDS | 60.0% | |
| GCCACATCACAGCAGCCAAC+AGG | + | chr4.4:32803556-32803575 | None:intergenic | 60.0% | |
| GCTGGTTGAGCCTGATTGGC+CGG | + | chr4.4:32800385-32800404 | None:intergenic | 60.0% | |
| GGGAGCTAGTTAGGGTGGTG+TGG | - | chr4.4:32803884-32803903 | MS.gene006555:intron | 60.0% | |
| GTCTGCTCACTCCGGCTAGA+CGG | + | chr4.4:32800423-32800442 | None:intergenic | 60.0% | |
| TAGCCGGAGTGAGCAGACCA+CGG | - | chr4.4:32800425-32800444 | MS.gene006555:CDS | 60.0% | |
| AGCCGGAGTGAGCAGACCAC+GGG | - | chr4.4:32800426-32800445 | MS.gene006555:CDS | 65.0% | |
| CCGACATCACCTCCACTCCC+TGG | - | chr4.4:32804149-32804168 | MS.gene006555:CDS | 65.0% | |
| GCAGCCGCATCAATCGTCCG+TGG | - | chr4.4:32800317-32800336 | MS.gene006555:CDS | 65.0% | |
| GGGAGTGGAGGTGATGTCGG+AGG | + | chr4.4:32804149-32804168 | None:intergenic | 65.0% | |
| GTCCGTGGACGAAGAGGACG+AGG | - | chr4.4:32800332-32800351 | MS.gene006555:CDS | 65.0% | |
| GTGCCGGGTTACCGTCTAGC+CGG | - | chr4.4:32800409-32800428 | MS.gene006555:CDS | 65.0% | |
| TCCCCGTGGTCTGCTCACTC+CGG | + | chr4.4:32800431-32800450 | None:intergenic | 65.0% | |
| ! | GGCTCAACCAGCAGGAGTGC+CGG | - | chr4.4:32800393-32800412 | MS.gene006555:CDS | 65.0% |
| !! | GCTCAACCAGCAGGAGTGCC+GGG | - | chr4.4:32800394-32800413 | MS.gene006555:CDS | 65.0% |
| CGGTAACCCGGCACTCCTGC+TGG | + | chr4.4:32800403-32800422 | None:intergenic | 70.0% | |
| GCCGGAGTGAGCAGACCACG+GGG | - | chr4.4:32800427-32800446 | MS.gene006555:CDS | 70.0% | |
| ATCACCGGCGGCTGTCCCCG+TGG | + | chr4.4:32800445-32800464 | None:intergenic | 75.0% | |
| CAGACCACGGGGACAGCCGC+CGG | - | chr4.4:32800438-32800457 | MS.gene006555:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 32800309 | 32804205 | 32800309 | ID=MS.gene006555 |
| chr4.4 | mRNA | 32800309 | 32804205 | 32800309 | ID=MS.gene006555.t1;Parent=MS.gene006555 |
| chr4.4 | exon | 32803982 | 32804205 | 32803982 | ID=MS.gene006555.t1.exon1;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32803982 | 32804205 | 32803982 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| chr4.4 | exon | 32803133 | 32803206 | 32803133 | ID=MS.gene006555.t1.exon2;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32803133 | 32803206 | 32803133 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| chr4.4 | exon | 32802600 | 32802643 | 32802600 | ID=MS.gene006555.t1.exon3;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32802600 | 32802643 | 32802600 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| chr4.4 | exon | 32802070 | 32802132 | 32802070 | ID=MS.gene006555.t1.exon4;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32802070 | 32802132 | 32802070 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| chr4.4 | exon | 32801817 | 32801963 | 32801817 | ID=MS.gene006555.t1.exon5;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32801817 | 32801963 | 32801817 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| chr4.4 | exon | 32801648 | 32801716 | 32801648 | ID=MS.gene006555.t1.exon6;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32801648 | 32801716 | 32801648 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| chr4.4 | exon | 32801393 | 32801491 | 32801393 | ID=MS.gene006555.t1.exon7;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32801393 | 32801491 | 32801393 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| chr4.4 | exon | 32800819 | 32800889 | 32800819 | ID=MS.gene006555.t1.exon8;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32800819 | 32800889 | 32800819 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| chr4.4 | exon | 32800309 | 32800546 | 32800309 | ID=MS.gene006555.t1.exon9;Parent=MS.gene006555.t1 |
| chr4.4 | CDS | 32800309 | 32800546 | 32800309 | ID=cds.MS.gene006555.t1;Parent=MS.gene006555.t1 |
| Gene Sequence |
| Protein sequence |
