Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064876.t1 | XP_003603876.1 | 94.8 | 483 | 25 | 0 | 1 | 483 | 1 | 483 | 4.20E-242 | 847 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064876.t1 | Q84JG2 | 52.2 | 437 | 187 | 8 | 48 | 474 | 39 | 463 | 1.1e-113 | 411.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064876.t1 | G7J6G8 | 94.8 | 483 | 25 | 0 | 1 | 483 | 1 | 483 | 3.0e-242 | 847.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064876.t1 | MTR_3g116120 | 98.344 | 483 | 8 | 0 | 1 | 483 | 1 | 483 | 0.0 | 978 |
MS.gene064876.t1 | MTR_5g085170 | 81.988 | 483 | 37 | 3 | 1 | 483 | 1 | 433 | 0.0 | 767 |
MS.gene064876.t1 | MTR_6g053260 | 52.807 | 481 | 79 | 11 | 1 | 480 | 1 | 334 | 3.23e-128 | 389 |
MS.gene064876.t1 | MTR_3g099000 | 27.392 | 533 | 263 | 12 | 47 | 469 | 6 | 524 | 7.47e-54 | 189 |
MS.gene064876.t1 | MTR_3g088480 | 25.388 | 516 | 282 | 18 | 56 | 474 | 170 | 679 | 4.80e-33 | 133 |
MS.gene064876.t1 | MTR_4g069830 | 29.643 | 280 | 148 | 6 | 51 | 281 | 133 | 412 | 1.72e-28 | 120 |
MS.gene064876.t1 | MTR_4g069830 | 29.643 | 280 | 148 | 6 | 51 | 281 | 133 | 412 | 1.89e-28 | 120 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064876.t1 | AT2G33610 | 52.174 | 437 | 187 | 8 | 48 | 474 | 39 | 463 | 4.72e-147 | 429 |
MS.gene064876.t1 | AT2G47620 | 27.642 | 492 | 275 | 11 | 51 | 465 | 7 | 494 | 1.52e-37 | 144 |
MS.gene064876.t1 | AT1G21700 | 24.423 | 520 | 297 | 17 | 35 | 472 | 158 | 663 | 1.77e-37 | 146 |
MS.gene064876.t1 | AT2G47620 | 31.419 | 296 | 153 | 6 | 51 | 300 | 7 | 298 | 1.06e-33 | 132 |
MS.gene064876.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 2.96e-25 | 110 |
MS.gene064876.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 3.08e-25 | 110 |
MS.gene064876.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 3.22e-25 | 110 |
MS.gene064876.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 3.22e-25 | 110 |
Find 120 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGGCGTCGCTAGAGGTTT+TGG | 0.216425 | 3.3:+94695446 | None:intergenic |
CTTGAAGCTATTACGAATTT+CGG | 0.268562 | 3.3:-94694525 | MS.gene064876:CDS |
GAGGCACGACGGTTCTGTTT+GGG | 0.304033 | 3.3:+94695574 | None:intergenic |
GGCTGCTTTCCTTTCTGCTT+TGG | 0.304195 | 3.3:-94693925 | MS.gene064876:CDS |
GGTTCTGGTAATGGGACTTC+AGG | 0.304961 | 3.3:+94695468 | None:intergenic |
TTCTGAGGTTACAGAAGTTC+AGG | 0.308719 | 3.3:-94693487 | MS.gene064876:intron |
GCCACCGGAGGCGGCGGTGG+TGG | 0.310149 | 3.3:+94695495 | None:intergenic |
TTTGTAAACCCTAGGGTTCT+TGG | 0.330782 | 3.3:+94695341 | None:intergenic |
AGGCGGCGGTGGTGGGTTCG+AGG | 0.332048 | 3.3:+94695503 | None:intergenic |
GCTTTCCTTTCTGCTTTGGC+AGG | 0.337459 | 3.3:-94693921 | MS.gene064876:CDS |
GAGAAGGCAATCATGTAAAA+AGG | 0.339330 | 3.3:-94693222 | MS.gene064876:CDS |
TTTATCCGACGCAACAGTTT+CGG | 0.342652 | 3.3:+94694323 | None:intergenic |
ATTCGTGGAAATTATCGAAT+TGG | 0.350506 | 3.3:-94694630 | MS.gene064876:CDS |
CCTAGGGTTCTTGGAAGATT+CGG | 0.357797 | 3.3:+94695350 | None:intergenic |
GGAGGCACGACGGTTCTGTT+TGG | 0.358696 | 3.3:+94695573 | None:intergenic |
CGCTCAGTAAACCTCTCAAA+TGG | 0.370402 | 3.3:-94695158 | MS.gene064876:CDS |
CTAGGGTTCTTGGAAGATTC+GGG | 0.380857 | 3.3:+94695351 | None:intergenic |
ATTCGATGCTGCGTCGGGTT+TGG | 0.382011 | 3.3:+94695122 | None:intergenic |
GACGGTTCTGTTTGGGGTTG+AGG | 0.382202 | 3.3:+94695581 | None:intergenic |
TTCGCCACCGGAGGCGGCGG+TGG | 0.405270 | 3.3:+94695492 | None:intergenic |
AGTCGGAGGTTGAGGTGTTC+CGG | 0.412366 | 3.3:+94695539 | None:intergenic |
TGAGGATTTAGACGTGCTAA+TGG | 0.416011 | 3.3:-94693338 | MS.gene064876:CDS |
TTACGAATTTCGGTGATGAT+TGG | 0.419721 | 3.3:-94694515 | MS.gene064876:CDS |
CCTTTCTGCTTTGGCAGGGA+CGG | 0.421374 | 3.3:-94693916 | MS.gene064876:CDS |
TCTTCGTTTGCTCCAACTGC+TGG | 0.436192 | 3.3:+94693305 | None:intergenic |
CCACCGGAGGCGGCGGTGGT+GGG | 0.442186 | 3.3:+94695496 | None:intergenic |
GAAAGAACCTGAGCCATGAT+AGG | 0.443755 | 3.3:+94694255 | None:intergenic |
TCAGGTTTCGCCACCGGAGG+CGG | 0.443862 | 3.3:+94695486 | None:intergenic |
ACGGATTTCGCATTCGTGAA+TGG | 0.445293 | 3.3:+94695380 | None:intergenic |
GGTGGTGGGTTCGAGGGAGG+CGG | 0.448251 | 3.3:+94695510 | None:intergenic |
GCGGAATTCGATGCTGCGTC+GGG | 0.449596 | 3.3:+94695117 | None:intergenic |
TGGAAGATTCGGGAATGTTA+CGG | 0.464080 | 3.3:+94695361 | None:intergenic |
TTGCACGCAATAAAGATCCT+TGG | 0.465240 | 3.3:+94693553 | None:intergenic |
AGGGTTGCTCATCAAGTTGT+TGG | 0.467288 | 3.3:-94694489 | MS.gene064876:CDS |
GAACCCACCACCGCCGCCTC+CGG | 0.468860 | 3.3:-94695499 | MS.gene064876:CDS |
GTGCCTCCGTCTTCCGCCAC+CGG | 0.470261 | 3.3:-94695558 | MS.gene064876:CDS |
ATCTGAAGCATTACCACCAT+TGG | 0.471038 | 3.3:+94693581 | None:intergenic |
GATTCACATTCAGCATCAAC+GGG | 0.474269 | 3.3:+94694345 | None:intergenic |
AATCAACTAGAATTAATTAC+CGG | 0.474504 | 3.3:-94693839 | MS.gene064876:CDS |
TCTAGTTGATTTGTAAACAT+TGG | 0.479041 | 3.3:+94693851 | None:intergenic |
CGAACCAACGTCACCGACTA+GGG | 0.480955 | 3.3:+94695242 | None:intergenic |
GGCGGTGGTGGGTTCGAGGG+AGG | 0.482062 | 3.3:+94695507 | None:intergenic |
ATTCTCTTAGCTTCTTTGAC+AGG | 0.485476 | 3.3:+94695075 | None:intergenic |
CAAAATTGATAAGCTTGTCC+TGG | 0.486513 | 3.3:+94693359 | None:intergenic |
CTGTAGTATTTGTAAACCCT+AGG | 0.490342 | 3.3:+94695333 | None:intergenic |
TCGAACCAACGTCACCGACT+AGG | 0.492371 | 3.3:+94695241 | None:intergenic |
TCTGCTCCTCGCATTGATGA+TGG | 0.492996 | 3.3:-94694387 | MS.gene064876:CDS |
CCGAATCTTCCAAGAACCCT+AGG | 0.500165 | 3.3:-94695350 | MS.gene064876:CDS |
GCCACTCAAGATGGTTCTCA+TGG | 0.500382 | 3.3:-94695407 | MS.gene064876:CDS |
GGTGTTCCGGTGGCGGAAGA+CGG | 0.500983 | 3.3:+94695552 | None:intergenic |
AGGTTGAGGTGTTCCGGTGG+CGG | 0.501069 | 3.3:+94695545 | None:intergenic |
GGGACTTCAGGTTTCGCCAC+CGG | 0.504355 | 3.3:+94695480 | None:intergenic |
TGCGGAATTCGATGCTGCGT+CGG | 0.506487 | 3.3:+94695116 | None:intergenic |
GGTTTCGCCACCGGAGGCGG+CGG | 0.509368 | 3.3:+94695489 | None:intergenic |
TCTTTGACAGGCGCCGGAGA+AGG | 0.514796 | 3.3:+94695087 | None:intergenic |
CTTTCCTTTCTGCTTTGGCA+GGG | 0.515547 | 3.3:-94693920 | MS.gene064876:CDS |
TGATTGCCTTCTCCGGTCGT+TGG | 0.518632 | 3.3:+94693232 | None:intergenic |
GATGCTGCTGTTGCATCCAA+TGG | 0.519252 | 3.3:-94693597 | MS.gene064876:CDS |
GGCTTGCTTTGCCTGTGAGA+AGG | 0.520661 | 3.3:-94695022 | MS.gene064876:intron |
ATAAAAGATTGAGCTGATCA+AGG | 0.521081 | 3.3:+94693272 | None:intergenic |
ACGAGCAACACATTCCTTGT+CGG | 0.522938 | 3.3:+94694461 | None:intergenic |
GGAGTAGTAGTCGGAGGTTG+AGG | 0.527129 | 3.3:+94695531 | None:intergenic |
ATCAATGCGAGGAGCAGACT+CGG | 0.528293 | 3.3:+94694392 | None:intergenic |
GGATGCTAGCAATCCTATCA+TGG | 0.529881 | 3.3:-94694268 | MS.gene064876:CDS |
TGCAGAAACTGATCACCAAA+AGG | 0.531795 | 3.3:+94694426 | None:intergenic |
AGAACCATCTTGAGTGGCTA+GGG | 0.532947 | 3.3:+94695412 | None:intergenic |
TAGCAATCCTATCATGGCTC+AGG | 0.533854 | 3.3:-94694262 | MS.gene064876:intron |
TCTTTATCTTCCCATTTGAG+AGG | 0.534057 | 3.3:+94695147 | None:intergenic |
TGTAGTATTTGTAAACCCTA+GGG | 0.534357 | 3.3:+94695334 | None:intergenic |
AAAACATCTGCACCAACGAC+CGG | 0.535739 | 3.3:-94693244 | MS.gene064876:CDS |
TCTGCACCAACGACCGGAGA+AGG | 0.536832 | 3.3:-94693238 | MS.gene064876:CDS |
GGATTCACATTCAGCATCAA+CGG | 0.539105 | 3.3:+94694344 | None:intergenic |
GCTCAGTAAACCTCTCAAAT+GGG | 0.539806 | 3.3:-94695157 | MS.gene064876:CDS |
CCCACCACCGCCGCCTCCGG+TGG | 0.540370 | 3.3:-94695496 | MS.gene064876:CDS |
TTAGCTTCTTTGACAGGCGC+CGG | 0.542076 | 3.3:+94695081 | None:intergenic |
ATTTCGGTGATGATTGGAAG+AGG | 0.544103 | 3.3:-94694509 | MS.gene064876:CDS |
AACTAAACTGACCTTCTCAC+AGG | 0.545557 | 3.3:+94695011 | None:intergenic |
GCTAGGGACTAGTATTAAGT+TGG | 0.546014 | 3.3:+94695428 | None:intergenic |
GGTTTACTGAGCGAAGAAGA+AGG | 0.548651 | 3.3:+94695168 | None:intergenic |
TTCTGCTTTGGCAGGGACGG+AGG | 0.550159 | 3.3:-94693913 | MS.gene064876:CDS |
TGCAAATTTACAGCTTGAGA+AGG | 0.556628 | 3.3:-94693535 | MS.gene064876:CDS |
TTCCGCAGAATCTCCTTCTC+CGG | 0.556844 | 3.3:-94695100 | MS.gene064876:CDS |
CGAATCTTCCAAGAACCCTA+GGG | 0.558609 | 3.3:-94695349 | MS.gene064876:CDS |
CCTTGCTGCAATGTATTCCT+CGG | 0.560596 | 3.3:+94693810 | None:intergenic |
ATGTATTCCTCGGAAATGAC+CGG | 0.561368 | 3.3:+94693820 | None:intergenic |
TTGCTCATCAAGTTGTTGGT+AGG | 0.563248 | 3.3:-94694485 | MS.gene064876:CDS |
CCGTCCCTGCCAAAGCAGAA+AGG | 0.564962 | 3.3:+94693916 | None:intergenic |
GGCGGCGGTGGTGGGTTCGA+GGG | 0.565038 | 3.3:+94695504 | None:intergenic |
AGGCACGACGGTTCTGTTTG+GGG | 0.565942 | 3.3:+94695575 | None:intergenic |
TATTAAGTTGGCGTCGCTAG+AGG | 0.569207 | 3.3:+94695440 | None:intergenic |
TAATACAGAATTCAAGAGAG+TGG | 0.570887 | 3.3:-94694601 | MS.gene064876:CDS |
GAGAACCATCTTGAGTGGCT+AGG | 0.580360 | 3.3:+94695411 | None:intergenic |
GACGGAGGTTGCACAAGCTG+CGG | 0.582049 | 3.3:-94693898 | MS.gene064876:CDS |
AATGCTTCAGATTCTATCCA+AGG | 0.586687 | 3.3:-94693570 | MS.gene064876:CDS |
CAAGAGAGTGGAGATAAGTG+AGG | 0.590112 | 3.3:-94694589 | MS.gene064876:CDS |
ACTTCAGGTTTCGCCACCGG+AGG | 0.593361 | 3.3:+94695483 | None:intergenic |
TAGTCCCTAGCCACTCAAGA+TGG | 0.598302 | 3.3:-94695416 | MS.gene064876:CDS |
TTAATTACCGGTCATTTCCG+AGG | 0.609744 | 3.3:-94693827 | MS.gene064876:CDS |
TTTCGGTGATGATTGGAAGA+GGG | 0.613337 | 3.3:-94694508 | MS.gene064876:CDS |
AATGTGTCTCACACCTCTTG+CGG | 0.617103 | 3.3:-94694289 | MS.gene064876:CDS |
GAGGGAGGCGGAGTAGTAGT+CGG | 0.620100 | 3.3:+94695522 | None:intergenic |
GGATTGCTAGCATCCGCAAG+AGG | 0.621759 | 3.3:+94694276 | None:intergenic |
CCACTCAAGATGGTTCTCAT+GGG | 0.624877 | 3.3:-94695406 | MS.gene064876:CDS |
CGCCGGAGAAGGAGATTCTG+CGG | 0.634496 | 3.3:+94695098 | None:intergenic |
CCGAGGAATACATTGCAGCA+AGG | 0.638324 | 3.3:-94693810 | MS.gene064876:intron |
TGAATCCGAAACTGTTGCGT+CGG | 0.639096 | 3.3:-94694328 | MS.gene064876:CDS |
CGGAGGTTGAGGTGTTCCGG+TGG | 0.643233 | 3.3:+94695542 | None:intergenic |
CCCATGAGAACCATCTTGAG+TGG | 0.645166 | 3.3:+94695406 | None:intergenic |
GTTCCGGTGGCGGAAGACGG+AGG | 0.648161 | 3.3:+94695555 | None:intergenic |
GAAGCTAAGAGAATCTGTAG+TGG | 0.654963 | 3.3:-94695066 | MS.gene064876:CDS |
AGTTGTTGGTAGGACCGACA+AGG | 0.658858 | 3.3:-94694475 | MS.gene064876:CDS |
TCACATTCAGCATCAACGGG+AGG | 0.659217 | 3.3:+94694348 | None:intergenic |
GGAGGCGGAGTAGTAGTCGG+AGG | 0.661488 | 3.3:+94695525 | None:intergenic |
GATGTTCGCAAAACCCTAGT+CGG | 0.661918 | 3.3:-94695255 | MS.gene064876:CDS |
ATAATATGACGTTGTGTGCG+AGG | 0.667737 | 3.3:-94694659 | MS.gene064876:CDS |
TGAGAAGGAAGAATCAGACG+TGG | 0.680762 | 3.3:-94693520 | MS.gene064876:CDS |
AAAACCCTAGTCGGTGACGT+TGG | 0.681388 | 3.3:-94695246 | MS.gene064876:CDS |
GGCGGAAGACGGAGGCACGA+CGG | 0.688333 | 3.3:+94695563 | None:intergenic |
GCTGCTGTTGCATCCAATGG+TGG | 0.695124 | 3.3:-94693594 | MS.gene064876:CDS |
TCAGAACCATCATCAATGCG+AGG | 0.698974 | 3.3:+94694381 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAAATATTTTCATGATT+TGG | + | chr3.3:94693944-94693963 | None:intergenic | 10.0% |
!!! | ATAATTTGAAATGTGAATTT+CGG | - | chr3.3:94694116-94694135 | MS.gene064876:intron | 15.0% |
!! | AATCAACTAGAATTAATTAC+CGG | - | chr3.3:94694965-94694984 | MS.gene064876:intron | 20.0% |
!! | AATCTGTCATATATCTTAAT+AGG | - | chr3.3:94695074-94695093 | MS.gene064876:CDS | 20.0% |
!! | ATCTGTCATATATCTTAATA+GGG | - | chr3.3:94695075-94695094 | MS.gene064876:CDS | 20.0% |
!! | ATTTGTGTGTTATAATGTTT+GGG | - | chr3.3:94694624-94694643 | MS.gene064876:CDS | 20.0% |
!! | CCAATCATATATGTATTTAA+TGG | + | chr3.3:94694033-94694052 | None:intergenic | 20.0% |
!! | CCATTAAATACATATATGAT+TGG | - | chr3.3:94694030-94694049 | MS.gene064876:intron | 20.0% |
!! | GAAATTCACATTTCAAATTA+TGG | + | chr3.3:94694117-94694136 | None:intergenic | 20.0% |
!! | TAAACAATTCAAAGAAAACA+AGG | + | chr3.3:94694590-94694609 | None:intergenic | 20.0% |
!! | TAATAATCTTTGCTGAATAT+TGG | - | chr3.3:94695396-94695415 | MS.gene064876:CDS | 20.0% |
!! | TTAAAATTAGTTGTATGACA+TGG | - | chr3.3:94693959-94693978 | MS.gene064876:intron | 20.0% |
!! | TTATTTGTTCAAATTATTGC+AGG | - | chr3.3:94694858-94694877 | MS.gene064876:intron | 20.0% |
!!! | AAAATATTTTCATGATTTGG+CGG | + | chr3.3:94693941-94693960 | None:intergenic | 20.0% |
! | AAATCATTTGTCATTCAACA+AGG | + | chr3.3:94694812-94694831 | None:intergenic | 25.0% |
! | AATCATTTGTCATTCAACAA+GGG | + | chr3.3:94694811-94694830 | None:intergenic | 25.0% |
! | AGAACAATTGGAATTTGATT+CGG | + | chr3.3:94694700-94694719 | None:intergenic | 25.0% |
! | CATTTGTGTGTTATAATGTT+TGG | - | chr3.3:94694623-94694642 | MS.gene064876:CDS | 25.0% |
! | TCTATAGATGAAAAATATCC+AGG | - | chr3.3:94695427-94695446 | MS.gene064876:CDS | 25.0% |
! | TTTGTGTGTTATAATGTTTG+GGG | - | chr3.3:94694625-94694644 | MS.gene064876:CDS | 25.0% |
!!! | CGATTTAGTGTTTTATTTGA+TGG | - | chr3.3:94695355-94695374 | MS.gene064876:CDS | 25.0% |
!!! | TCTAGTTGATTTGTAAACAT+TGG | + | chr3.3:94694956-94694975 | None:intergenic | 25.0% |
AATCCGAGTTTAAAGATTTC+CGG | + | chr3.3:94695160-94695179 | None:intergenic | 30.0% | |
ATAAAAGATTGAGCTGATCA+AGG | + | chr3.3:94695535-94695554 | None:intergenic | 30.0% | |
ATTCGTGGAAATTATCGAAT+TGG | - | chr3.3:94694174-94694193 | MS.gene064876:intron | 30.0% | |
CTGTCTTAATTCTTAGTAGT+TGG | - | chr3.3:94694727-94694746 | MS.gene064876:intron | 30.0% | |
CTTGAAGCTATTACGAATTT+CGG | - | chr3.3:94694279-94694298 | MS.gene064876:CDS | 30.0% | |
GAATCAAATTCCAATTGTTC+TGG | - | chr3.3:94694699-94694718 | MS.gene064876:intron | 30.0% | |
TAATACAGAATTCAAGAGAG+TGG | - | chr3.3:94694203-94694222 | MS.gene064876:intron | 30.0% | |
TAATAGGGTTTATCTCGAAA+TGG | - | chr3.3:94695090-94695109 | MS.gene064876:CDS | 30.0% | |
TGTAGTATTTGTAAACCCTA+GGG | + | chr3.3:94693473-94693492 | None:intergenic | 30.0% | |
TTGATTACGTGTAGCATTAA+AGG | - | chr3.3:94694665-94694684 | MS.gene064876:intron | 30.0% | |
! | GTACACTTCATTAGTTTGAA+TGG | - | chr3.3:94695132-94695151 | MS.gene064876:CDS | 30.0% |
! | TCGGATTTTCTCATTAGAAA+TGG | - | chr3.3:94695173-94695192 | MS.gene064876:CDS | 30.0% |
! | TTCATTAGTTTGAATGGTTC+CGG | - | chr3.3:94695138-94695157 | MS.gene064876:CDS | 30.0% |
! | TTTTCAGATTCAATCCTAAC+AGG | - | chr3.3:94693511-94693530 | MS.gene064876:CDS | 30.0% |
!! | AAAAAATGAATGGACTGAGA+AGG | - | chr3.3:94694242-94694261 | MS.gene064876:intron | 30.0% |
!! | CTTTGATTTTCTTGAAGCTT+GGG | - | chr3.3:94693596-94693615 | MS.gene064876:CDS | 30.0% |
!! | TCTTTGATTTTCTTGAAGCT+TGG | - | chr3.3:94693595-94693614 | MS.gene064876:CDS | 30.0% |
!! | TTTGATTTTCTTGAAGCTTG+GGG | - | chr3.3:94693597-94693616 | MS.gene064876:CDS | 30.0% |
AATGCTTCAGATTCTATCCA+AGG | - | chr3.3:94695234-94695253 | MS.gene064876:CDS | 35.0% | |
ATAACCTGGGCTAAGATTAT+AGG | - | chr3.3:94695029-94695048 | MS.gene064876:CDS | 35.0% | |
ATTCTCTTAGCTTCTTTGAC+AGG | + | chr3.3:94693732-94693751 | None:intergenic | 35.0% | |
CAAAATTGATAAGCTTGTCC+TGG | + | chr3.3:94695448-94695467 | None:intergenic | 35.0% | |
CTGTAGTATTTGTAAACCCT+AGG | + | chr3.3:94693474-94693493 | None:intergenic | 35.0% | |
CTTTGCTGAATATTGGATGT+TGG | - | chr3.3:94695403-94695422 | MS.gene064876:CDS | 35.0% | |
GAATCTGAAAAACTTGACGA+TGG | + | chr3.3:94693502-94693521 | None:intergenic | 35.0% | |
GAGAAGGCAATCATGTAAAA+AGG | - | chr3.3:94695582-94695601 | MS.gene064876:CDS | 35.0% | |
GTGAGAATGACATATAACCT+GGG | - | chr3.3:94695016-94695035 | MS.gene064876:intron | 35.0% | |
GTGAGGAGACAAAAAATGAA+TGG | - | chr3.3:94694232-94694251 | MS.gene064876:intron | 35.0% | |
GTTCCGGAAATCTTTAAACT+CGG | - | chr3.3:94695154-94695173 | MS.gene064876:CDS | 35.0% | |
TCTTTATCTTCCCATTTGAG+AGG | + | chr3.3:94693660-94693679 | None:intergenic | 35.0% | |
TGCAAATTTACAGCTTGAGA+AGG | - | chr3.3:94695269-94695288 | MS.gene064876:CDS | 35.0% | |
TTACGAATTTCGGTGATGAT+TGG | - | chr3.3:94694289-94694308 | MS.gene064876:CDS | 35.0% | |
! | GGACAAGCTTATCAATTTTG+AGG | - | chr3.3:94695448-94695467 | MS.gene064876:CDS | 35.0% |
! | GTGAATGTGATTTTCCTGTT+AGG | + | chr3.3:94693528-94693547 | None:intergenic | 35.0% |
! | TTTTACATGATTGCCTTCTC+CGG | + | chr3.3:94695582-94695601 | None:intergenic | 35.0% |
!!! | CGTTTTTTAGAGCTTCCTTT+TGG | - | chr3.3:94694363-94694382 | MS.gene064876:CDS | 35.0% |
!!! | TGGCGGAATACAAAGTTTTT+TGG | + | chr3.3:94693924-94693943 | None:intergenic | 35.0% |
AACTAAACTGACCTTCTCAC+AGG | + | chr3.3:94693796-94693815 | None:intergenic | 40.0% | |
AGATCCTATAATCTTAGCCC+AGG | + | chr3.3:94695036-94695055 | None:intergenic | 40.0% | |
ATAATATGACGTTGTGTGCG+AGG | - | chr3.3:94694145-94694164 | MS.gene064876:intron | 40.0% | |
ATGTATTCCTCGGAAATGAC+CGG | + | chr3.3:94694987-94695006 | None:intergenic | 40.0% | |
ATTTCGGTGATGATTGGAAG+AGG | - | chr3.3:94694295-94694314 | MS.gene064876:CDS | 40.0% | |
CGTGGAAAAAGCAATTTCTG+AGG | - | chr3.3:94695302-94695321 | MS.gene064876:CDS | 40.0% | |
CTGCAAAAATCTCTGTGTCA+TGG | - | chr3.3:94693761-94693780 | MS.gene064876:intron | 40.0% | |
GAAGCTAAGAGAATCTGTAG+TGG | - | chr3.3:94693738-94693757 | MS.gene064876:intron | 40.0% | |
GAAGTGTACACGATGAACAT+TGG | + | chr3.3:94695121-94695140 | None:intergenic | 40.0% | |
GATTCACATTCAGCATCAAC+GGG | + | chr3.3:94694462-94694481 | None:intergenic | 40.0% | |
GCTCAGTAAACCTCTCAAAT+GGG | - | chr3.3:94693647-94693666 | MS.gene064876:intron | 40.0% | |
GGATTCACATTCAGCATCAA+CGG | + | chr3.3:94694463-94694482 | None:intergenic | 40.0% | |
GGTGAGAATGACATATAACC+TGG | - | chr3.3:94695015-94695034 | MS.gene064876:intron | 40.0% | |
TGAGGATTTAGACGTGCTAA+TGG | - | chr3.3:94695466-94695485 | MS.gene064876:CDS | 40.0% | |
TGCAGAAACTGATCACCAAA+AGG | + | chr3.3:94694381-94694400 | None:intergenic | 40.0% | |
TGGAAGATTCGGGAATGTTA+CGG | + | chr3.3:94693446-94693465 | None:intergenic | 40.0% | |
TGTATGACATGGCAGATTGA+TGG | - | chr3.3:94693970-94693989 | MS.gene064876:intron | 40.0% | |
TTAATGACTGTGCTCTGACA+CGG | - | chr3.3:94694760-94694779 | MS.gene064876:intron | 40.0% | |
TTAATTACCGGTCATTTCCG+AGG | - | chr3.3:94694977-94694996 | MS.gene064876:intron | 40.0% | |
TTGCACGCAATAAAGATCCT+TGG | + | chr3.3:94695254-94695273 | None:intergenic | 40.0% | |
TTTATCCGACGCAACAGTTT+CGG | + | chr3.3:94694484-94694503 | None:intergenic | 40.0% | |
TTTCGGTGATGATTGGAAGA+GGG | - | chr3.3:94694296-94694315 | MS.gene064876:CDS | 40.0% | |
TTTGTAAACCCTAGGGTTCT+TGG | + | chr3.3:94693466-94693485 | None:intergenic | 40.0% | |
TTTGTCATTCAACAAGGGAC+TGG | + | chr3.3:94694806-94694825 | None:intergenic | 40.0% | |
! | ATCTGAAGCATTACCACCAT+TGG | + | chr3.3:94695226-94695245 | None:intergenic | 40.0% |
! | GCAGATTGATGGTTTCTTAG+CGG | - | chr3.3:94693981-94694000 | MS.gene064876:intron | 40.0% |
! | GCTAGGGACTAGTATTAAGT+TGG | + | chr3.3:94693379-94693398 | None:intergenic | 40.0% |
! | TTGCTCATCAAGTTGTTGGT+AGG | - | chr3.3:94694319-94694338 | MS.gene064876:CDS | 40.0% |
!! | TTCTGAGGTTACAGAAGTTC+AGG | - | chr3.3:94695317-94695336 | MS.gene064876:CDS | 40.0% |
!!! | AGGTTTTGGGTTCTGGTAAT+GGG | + | chr3.3:94693347-94693366 | None:intergenic | 40.0% |
AAAACATCTGCACCAACGAC+CGG | - | chr3.3:94695560-94695579 | MS.gene064876:CDS | 45.0% | |
AATGTGTCTCACACCTCTTG+CGG | - | chr3.3:94694515-94694534 | MS.gene064876:CDS | 45.0% | |
ACGAGCAACACATTCCTTGT+CGG | + | chr3.3:94694346-94694365 | None:intergenic | 45.0% | |
ACGGATTTCGCATTCGTGAA+TGG | + | chr3.3:94693427-94693446 | None:intergenic | 45.0% | |
AGAACCATCTTGAGTGGCTA+GGG | + | chr3.3:94693395-94693414 | None:intergenic | 45.0% | |
CAAGAGAGTGGAGATAAGTG+AGG | - | chr3.3:94694215-94694234 | MS.gene064876:intron | 45.0% | |
CCACTCAAGATGGTTCTCAT+GGG | - | chr3.3:94693398-94693417 | MS.gene064876:intron | 45.0% | |
CCTAGGGTTCTTGGAAGATT+CGG | + | chr3.3:94693457-94693476 | None:intergenic | 45.0% | |
CCTTGCTGCAATGTATTCCT+CGG | + | chr3.3:94694997-94695016 | None:intergenic | 45.0% | |
CGAATCTTCCAAGAACCCTA+GGG | - | chr3.3:94693455-94693474 | MS.gene064876:intron | 45.0% | |
CGCTCAGTAAACCTCTCAAA+TGG | - | chr3.3:94693646-94693665 | MS.gene064876:intron | 45.0% | |
CTAGGGTTCTTGGAAGATTC+GGG | + | chr3.3:94693456-94693475 | None:intergenic | 45.0% | |
CTTTCCTTTCTGCTTTGGCA+GGG | - | chr3.3:94694884-94694903 | MS.gene064876:intron | 45.0% | |
GAAAGAACCTGAGCCATGAT+AGG | + | chr3.3:94694552-94694571 | None:intergenic | 45.0% | |
GACAGCGATTCCAGAACAAT+TGG | + | chr3.3:94694712-94694731 | None:intergenic | 45.0% | |
GATGTTCGCAAAACCCTAGT+CGG | - | chr3.3:94693549-94693568 | MS.gene064876:CDS | 45.0% | |
GGATGCTAGCAATCCTATCA+TGG | - | chr3.3:94694536-94694555 | MS.gene064876:CDS | 45.0% | |
GGTTTACTGAGCGAAGAAGA+AGG | + | chr3.3:94693639-94693658 | None:intergenic | 45.0% | |
TAGCAATCCTATCATGGCTC+AGG | - | chr3.3:94694542-94694561 | MS.gene064876:CDS | 45.0% | |
TCAGAACCATCATCAATGCG+AGG | + | chr3.3:94694426-94694445 | None:intergenic | 45.0% | |
TCATGGCTCAGGTTCTTTCT+TGG | - | chr3.3:94694553-94694572 | MS.gene064876:CDS | 45.0% | |
TGAATCCGAAACTGTTGCGT+CGG | - | chr3.3:94694476-94694495 | MS.gene064876:CDS | 45.0% | |
TGAGAAGGAAGAATCAGACG+TGG | - | chr3.3:94695284-94695303 | MS.gene064876:CDS | 45.0% | |
! | AGGGTTGCTCATCAAGTTGT+TGG | - | chr3.3:94694315-94694334 | MS.gene064876:CDS | 45.0% |
! | GACTAGGGTTTTGCGAACAT+CGG | + | chr3.3:94693550-94693569 | None:intergenic | 45.0% |
!! | TATTAAGTTGGCGTCGCTAG+AGG | + | chr3.3:94693367-94693386 | None:intergenic | 45.0% |
!! | TGTGCGAGGTGTTTTATTCG+TGG | - | chr3.3:94694159-94694178 | MS.gene064876:intron | 45.0% |
!!! | GAGGTTTTGGGTTCTGGTAA+TGG | + | chr3.3:94693348-94693367 | None:intergenic | 45.0% |
AAAACCCTAGTCGGTGACGT+TGG | - | chr3.3:94693558-94693577 | MS.gene064876:CDS | 50.0% | |
ATCAATGCGAGGAGCAGACT+CGG | + | chr3.3:94694415-94694434 | None:intergenic | 50.0% | |
CCCATGAGAACCATCTTGAG+TGG | + | chr3.3:94693401-94693420 | None:intergenic | 50.0% | |
CCGAATCTTCCAAGAACCCT+AGG | - | chr3.3:94693454-94693473 | MS.gene064876:intron | 50.0% | |
CCGAGGAATACATTGCAGCA+AGG | - | chr3.3:94694994-94695013 | MS.gene064876:intron | 50.0% | |
GAGAACCATCTTGAGTGGCT+AGG | + | chr3.3:94693396-94693415 | None:intergenic | 50.0% | |
GATGCTGCTGTTGCATCCAA+TGG | - | chr3.3:94695207-94695226 | MS.gene064876:CDS | 50.0% | |
GCCACTCAAGATGGTTCTCA+TGG | - | chr3.3:94693397-94693416 | MS.gene064876:intron | 50.0% | |
GCTTTCCTTTCTGCTTTGGC+AGG | - | chr3.3:94694883-94694902 | MS.gene064876:intron | 50.0% | |
GGAAAAAGAACGCCAGCAGT+TGG | - | chr3.3:94695487-94695506 | MS.gene064876:CDS | 50.0% | |
TAGTCCCTAGCCACTCAAGA+TGG | - | chr3.3:94693388-94693407 | MS.gene064876:intron | 50.0% | |
TCACATTCAGCATCAACGGG+AGG | + | chr3.3:94694459-94694478 | None:intergenic | 50.0% | |
TCTTCGTTTGCTCCAACTGC+TGG | + | chr3.3:94695502-94695521 | None:intergenic | 50.0% | |
TTAGCTTCTTTGACAGGCGC+CGG | + | chr3.3:94693726-94693745 | None:intergenic | 50.0% | |
TTCCGCAGAATCTCCTTCTC+CGG | - | chr3.3:94693704-94693723 | MS.gene064876:intron | 50.0% | |
! | AGTTGTTGGTAGGACCGACA+AGG | - | chr3.3:94694329-94694348 | MS.gene064876:CDS | 50.0% |
! | GGCTGCTTTCCTTTCTGCTT+TGG | - | chr3.3:94694879-94694898 | MS.gene064876:intron | 50.0% |
! | TCTGCTCCTCGCATTGATGA+TGG | - | chr3.3:94694417-94694436 | MS.gene064876:CDS | 50.0% |
! | TTGGCGTCGCTAGAGGTTTT+GGG | + | chr3.3:94693360-94693379 | None:intergenic | 50.0% |
!! | GGTTCTGGTAATGGGACTTC+AGG | + | chr3.3:94693339-94693358 | None:intergenic | 50.0% |
!!! | TCGCTAGAGGTTTTGGGTTC+TGG | + | chr3.3:94693354-94693373 | None:intergenic | 50.0% |
AGGCACGACGGTTCTGTTTG+GGG | + | chr3.3:94693232-94693251 | None:intergenic | 55.0% | |
ATTCGATGCTGCGTCGGGTT+TGG | + | chr3.3:94693685-94693704 | None:intergenic | 55.0% | |
CCTTTCTGCTTTGGCAGGGA+CGG | - | chr3.3:94694888-94694907 | MS.gene064876:intron | 55.0% | |
GAGGCACGACGGTTCTGTTT+GGG | + | chr3.3:94693233-94693252 | None:intergenic | 55.0% | |
GCTGCTGTTGCATCCAATGG+TGG | - | chr3.3:94695210-94695229 | MS.gene064876:CDS | 55.0% | |
GGAGTAGTAGTCGGAGGTTG+AGG | + | chr3.3:94693276-94693295 | None:intergenic | 55.0% | |
GGATTGCTAGCATCCGCAAG+AGG | + | chr3.3:94694531-94694550 | None:intergenic | 55.0% | |
TGATTGCCTTCTCCGGTCGT+TGG | + | chr3.3:94695575-94695594 | None:intergenic | 55.0% | |
TGCGGAATTCGATGCTGCGT+CGG | + | chr3.3:94693691-94693710 | None:intergenic | 55.0% | |
! | AGTCGGAGGTTGAGGTGTTC+CGG | + | chr3.3:94693268-94693287 | None:intergenic | 55.0% |
! | CGAACCAACGTCACCGACTA+GGG | + | chr3.3:94693565-94693584 | None:intergenic | 55.0% |
! | GACGGTTCTGTTTGGGGTTG+AGG | + | chr3.3:94693226-94693245 | None:intergenic | 55.0% |
! | GGCTTGCTTTGCCTGTGAGA+AGG | - | chr3.3:94693782-94693801 | MS.gene064876:intron | 55.0% |
! | GTTGGCGTCGCTAGAGGTTT+TGG | + | chr3.3:94693361-94693380 | None:intergenic | 55.0% |
! | TCGAACCAACGTCACCGACT+AGG | + | chr3.3:94693566-94693585 | None:intergenic | 55.0% |
CCGTCCCTGCCAAAGCAGAA+AGG | + | chr3.3:94694891-94694910 | None:intergenic | 60.0% | |
CGCCGGAGAAGGAGATTCTG+CGG | + | chr3.3:94693709-94693728 | None:intergenic | 60.0% | |
GACGGAGGTTGCACAAGCTG+CGG | - | chr3.3:94694906-94694925 | MS.gene064876:intron | 60.0% | |
GAGGGAGGCGGAGTAGTAGT+CGG | + | chr3.3:94693285-94693304 | None:intergenic | 60.0% | |
GCGGAATTCGATGCTGCGTC+GGG | + | chr3.3:94693690-94693709 | None:intergenic | 60.0% | |
TCTGCACCAACGACCGGAGA+AGG | - | chr3.3:94695566-94695585 | MS.gene064876:CDS | 60.0% | |
TTCTGCTTTGGCAGGGACGG+AGG | - | chr3.3:94694891-94694910 | MS.gene064876:intron | 60.0% | |
! | ACTTCAGGTTTCGCCACCGG+AGG | + | chr3.3:94693324-94693343 | None:intergenic | 60.0% |
! | AGGTTGAGGTGTTCCGGTGG+CGG | + | chr3.3:94693262-94693281 | None:intergenic | 60.0% |
! | GGAGGCACGACGGTTCTGTT+TGG | + | chr3.3:94693234-94693253 | None:intergenic | 60.0% |
! | GGGACTTCAGGTTTCGCCAC+CGG | + | chr3.3:94693327-94693346 | None:intergenic | 60.0% |
!! | TCTTTGACAGGCGCCGGAGA+AGG | + | chr3.3:94693720-94693739 | None:intergenic | 60.0% |
GGAGGCGGAGTAGTAGTCGG+AGG | + | chr3.3:94693282-94693301 | None:intergenic | 65.0% | |
TCAGGTTTCGCCACCGGAGG+CGG | + | chr3.3:94693321-94693340 | None:intergenic | 65.0% | |
! | CGGAGGTTGAGGTGTTCCGG+TGG | + | chr3.3:94693265-94693284 | None:intergenic | 65.0% |
!! | GGTGTTCCGGTGGCGGAAGA+CGG | + | chr3.3:94693255-94693274 | None:intergenic | 65.0% |
GTGCCTCCGTCTTCCGCCAC+CGG | - | chr3.3:94693246-94693265 | MS.gene064876:CDS | 70.0% | |
! | GGCGGAAGACGGAGGCACGA+CGG | + | chr3.3:94693244-94693263 | None:intergenic | 70.0% |
!! | GGTGGTGGGTTCGAGGGAGG+CGG | + | chr3.3:94693297-94693316 | None:intergenic | 70.0% |
!! | GTTCCGGTGGCGGAAGACGG+AGG | + | chr3.3:94693252-94693271 | None:intergenic | 70.0% |
GAACCCACCACCGCCGCCTC+CGG | - | chr3.3:94693305-94693324 | MS.gene064876:CDS | 75.0% | |
GGTTTCGCCACCGGAGGCGG+CGG | + | chr3.3:94693318-94693337 | None:intergenic | 75.0% | |
!! | AGGCGGCGGTGGTGGGTTCG+AGG | + | chr3.3:94693304-94693323 | None:intergenic | 75.0% |
!! | GGCGGCGGTGGTGGGTTCGA+GGG | + | chr3.3:94693303-94693322 | None:intergenic | 75.0% |
!! | GGCGGTGGTGGGTTCGAGGG+AGG | + | chr3.3:94693300-94693319 | None:intergenic | 75.0% |
! | CCACCGGAGGCGGCGGTGGT+GGG | + | chr3.3:94693311-94693330 | None:intergenic | 80.0% |
! | TTCGCCACCGGAGGCGGCGG+TGG | + | chr3.3:94693315-94693334 | None:intergenic | 80.0% |
! | CCCACCACCGCCGCCTCCGG+TGG | - | chr3.3:94693308-94693327 | MS.gene064876:CDS | 85.0% |
! | GCCACCGGAGGCGGCGGTGG+TGG | + | chr3.3:94693312-94693331 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 94693216 | 94695610 | 94693216 | ID=MS.gene064876 |
chr3.3 | mRNA | 94693216 | 94695610 | 94693216 | ID=MS.gene064876.t1;Parent=MS.gene064876 |
chr3.3 | exon | 94695023 | 94695610 | 94695023 | ID=MS.gene064876.t1.exon1;Parent=MS.gene064876.t1 |
chr3.3 | CDS | 94695023 | 94695610 | 94695023 | ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1 |
chr3.3 | exon | 94694263 | 94694682 | 94694263 | ID=MS.gene064876.t1.exon2;Parent=MS.gene064876.t1 |
chr3.3 | CDS | 94694263 | 94694682 | 94694263 | ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1 |
chr3.3 | exon | 94693811 | 94693946 | 94693811 | ID=MS.gene064876.t1.exon3;Parent=MS.gene064876.t1 |
chr3.3 | CDS | 94693811 | 94693946 | 94693811 | ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1 |
chr3.3 | exon | 94693488 | 94693618 | 94693488 | ID=MS.gene064876.t1.exon4;Parent=MS.gene064876.t1 |
chr3.3 | CDS | 94693488 | 94693618 | 94693488 | ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1 |
chr3.3 | exon | 94693216 | 94693392 | 94693216 | ID=MS.gene064876.t1.exon5;Parent=MS.gene064876.t1 |
chr3.3 | CDS | 94693216 | 94693392 | 94693216 | ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1 |
Gene Sequence |
Protein sequence |