AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064876


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064876.t1 MTR_3g116120 98.344 483 8 0 1 483 1 483 0.0 978
MS.gene064876.t1 MTR_5g085170 81.988 483 37 3 1 483 1 433 0.0 767
MS.gene064876.t1 MTR_6g053260 52.807 481 79 11 1 480 1 334 3.23e-128 389
MS.gene064876.t1 MTR_3g099000 27.392 533 263 12 47 469 6 524 7.47e-54 189
MS.gene064876.t1 MTR_3g088480 25.388 516 282 18 56 474 170 679 4.80e-33 133
MS.gene064876.t1 MTR_4g069830 29.643 280 148 6 51 281 133 412 1.72e-28 120
MS.gene064876.t1 MTR_4g069830 29.643 280 148 6 51 281 133 412 1.89e-28 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064876.t1 AT2G33610 52.174 437 187 8 48 474 39 463 4.72e-147 429
MS.gene064876.t1 AT2G47620 27.642 492 275 11 51 465 7 494 1.52e-37 144
MS.gene064876.t1 AT1G21700 24.423 520 297 17 35 472 158 663 1.77e-37 146
MS.gene064876.t1 AT2G47620 31.419 296 153 6 51 300 7 298 1.06e-33 132
MS.gene064876.t1 AT4G34430 30.686 277 146 7 51 281 139 415 2.96e-25 110
MS.gene064876.t1 AT4G34430 30.686 277 146 7 51 281 139 415 3.08e-25 110
MS.gene064876.t1 AT4G34430 30.686 277 146 7 51 281 139 415 3.22e-25 110
MS.gene064876.t1 AT4G34430 30.686 277 146 7 51 281 139 415 3.22e-25 110

Find 120 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCGTCGCTAGAGGTTT+TGG 0.216425 3.3:+94695446 None:intergenic
CTTGAAGCTATTACGAATTT+CGG 0.268562 3.3:-94694525 MS.gene064876:CDS
GAGGCACGACGGTTCTGTTT+GGG 0.304033 3.3:+94695574 None:intergenic
GGCTGCTTTCCTTTCTGCTT+TGG 0.304195 3.3:-94693925 MS.gene064876:CDS
GGTTCTGGTAATGGGACTTC+AGG 0.304961 3.3:+94695468 None:intergenic
TTCTGAGGTTACAGAAGTTC+AGG 0.308719 3.3:-94693487 MS.gene064876:intron
GCCACCGGAGGCGGCGGTGG+TGG 0.310149 3.3:+94695495 None:intergenic
TTTGTAAACCCTAGGGTTCT+TGG 0.330782 3.3:+94695341 None:intergenic
AGGCGGCGGTGGTGGGTTCG+AGG 0.332048 3.3:+94695503 None:intergenic
GCTTTCCTTTCTGCTTTGGC+AGG 0.337459 3.3:-94693921 MS.gene064876:CDS
GAGAAGGCAATCATGTAAAA+AGG 0.339330 3.3:-94693222 MS.gene064876:CDS
TTTATCCGACGCAACAGTTT+CGG 0.342652 3.3:+94694323 None:intergenic
ATTCGTGGAAATTATCGAAT+TGG 0.350506 3.3:-94694630 MS.gene064876:CDS
CCTAGGGTTCTTGGAAGATT+CGG 0.357797 3.3:+94695350 None:intergenic
GGAGGCACGACGGTTCTGTT+TGG 0.358696 3.3:+94695573 None:intergenic
CGCTCAGTAAACCTCTCAAA+TGG 0.370402 3.3:-94695158 MS.gene064876:CDS
CTAGGGTTCTTGGAAGATTC+GGG 0.380857 3.3:+94695351 None:intergenic
ATTCGATGCTGCGTCGGGTT+TGG 0.382011 3.3:+94695122 None:intergenic
GACGGTTCTGTTTGGGGTTG+AGG 0.382202 3.3:+94695581 None:intergenic
TTCGCCACCGGAGGCGGCGG+TGG 0.405270 3.3:+94695492 None:intergenic
AGTCGGAGGTTGAGGTGTTC+CGG 0.412366 3.3:+94695539 None:intergenic
TGAGGATTTAGACGTGCTAA+TGG 0.416011 3.3:-94693338 MS.gene064876:CDS
TTACGAATTTCGGTGATGAT+TGG 0.419721 3.3:-94694515 MS.gene064876:CDS
CCTTTCTGCTTTGGCAGGGA+CGG 0.421374 3.3:-94693916 MS.gene064876:CDS
TCTTCGTTTGCTCCAACTGC+TGG 0.436192 3.3:+94693305 None:intergenic
CCACCGGAGGCGGCGGTGGT+GGG 0.442186 3.3:+94695496 None:intergenic
GAAAGAACCTGAGCCATGAT+AGG 0.443755 3.3:+94694255 None:intergenic
TCAGGTTTCGCCACCGGAGG+CGG 0.443862 3.3:+94695486 None:intergenic
ACGGATTTCGCATTCGTGAA+TGG 0.445293 3.3:+94695380 None:intergenic
GGTGGTGGGTTCGAGGGAGG+CGG 0.448251 3.3:+94695510 None:intergenic
GCGGAATTCGATGCTGCGTC+GGG 0.449596 3.3:+94695117 None:intergenic
TGGAAGATTCGGGAATGTTA+CGG 0.464080 3.3:+94695361 None:intergenic
TTGCACGCAATAAAGATCCT+TGG 0.465240 3.3:+94693553 None:intergenic
AGGGTTGCTCATCAAGTTGT+TGG 0.467288 3.3:-94694489 MS.gene064876:CDS
GAACCCACCACCGCCGCCTC+CGG 0.468860 3.3:-94695499 MS.gene064876:CDS
GTGCCTCCGTCTTCCGCCAC+CGG 0.470261 3.3:-94695558 MS.gene064876:CDS
ATCTGAAGCATTACCACCAT+TGG 0.471038 3.3:+94693581 None:intergenic
GATTCACATTCAGCATCAAC+GGG 0.474269 3.3:+94694345 None:intergenic
AATCAACTAGAATTAATTAC+CGG 0.474504 3.3:-94693839 MS.gene064876:CDS
TCTAGTTGATTTGTAAACAT+TGG 0.479041 3.3:+94693851 None:intergenic
CGAACCAACGTCACCGACTA+GGG 0.480955 3.3:+94695242 None:intergenic
GGCGGTGGTGGGTTCGAGGG+AGG 0.482062 3.3:+94695507 None:intergenic
ATTCTCTTAGCTTCTTTGAC+AGG 0.485476 3.3:+94695075 None:intergenic
CAAAATTGATAAGCTTGTCC+TGG 0.486513 3.3:+94693359 None:intergenic
CTGTAGTATTTGTAAACCCT+AGG 0.490342 3.3:+94695333 None:intergenic
TCGAACCAACGTCACCGACT+AGG 0.492371 3.3:+94695241 None:intergenic
TCTGCTCCTCGCATTGATGA+TGG 0.492996 3.3:-94694387 MS.gene064876:CDS
CCGAATCTTCCAAGAACCCT+AGG 0.500165 3.3:-94695350 MS.gene064876:CDS
GCCACTCAAGATGGTTCTCA+TGG 0.500382 3.3:-94695407 MS.gene064876:CDS
GGTGTTCCGGTGGCGGAAGA+CGG 0.500983 3.3:+94695552 None:intergenic
AGGTTGAGGTGTTCCGGTGG+CGG 0.501069 3.3:+94695545 None:intergenic
GGGACTTCAGGTTTCGCCAC+CGG 0.504355 3.3:+94695480 None:intergenic
TGCGGAATTCGATGCTGCGT+CGG 0.506487 3.3:+94695116 None:intergenic
GGTTTCGCCACCGGAGGCGG+CGG 0.509368 3.3:+94695489 None:intergenic
TCTTTGACAGGCGCCGGAGA+AGG 0.514796 3.3:+94695087 None:intergenic
CTTTCCTTTCTGCTTTGGCA+GGG 0.515547 3.3:-94693920 MS.gene064876:CDS
TGATTGCCTTCTCCGGTCGT+TGG 0.518632 3.3:+94693232 None:intergenic
GATGCTGCTGTTGCATCCAA+TGG 0.519252 3.3:-94693597 MS.gene064876:CDS
GGCTTGCTTTGCCTGTGAGA+AGG 0.520661 3.3:-94695022 MS.gene064876:intron
ATAAAAGATTGAGCTGATCA+AGG 0.521081 3.3:+94693272 None:intergenic
ACGAGCAACACATTCCTTGT+CGG 0.522938 3.3:+94694461 None:intergenic
GGAGTAGTAGTCGGAGGTTG+AGG 0.527129 3.3:+94695531 None:intergenic
ATCAATGCGAGGAGCAGACT+CGG 0.528293 3.3:+94694392 None:intergenic
GGATGCTAGCAATCCTATCA+TGG 0.529881 3.3:-94694268 MS.gene064876:CDS
TGCAGAAACTGATCACCAAA+AGG 0.531795 3.3:+94694426 None:intergenic
AGAACCATCTTGAGTGGCTA+GGG 0.532947 3.3:+94695412 None:intergenic
TAGCAATCCTATCATGGCTC+AGG 0.533854 3.3:-94694262 MS.gene064876:intron
TCTTTATCTTCCCATTTGAG+AGG 0.534057 3.3:+94695147 None:intergenic
TGTAGTATTTGTAAACCCTA+GGG 0.534357 3.3:+94695334 None:intergenic
AAAACATCTGCACCAACGAC+CGG 0.535739 3.3:-94693244 MS.gene064876:CDS
TCTGCACCAACGACCGGAGA+AGG 0.536832 3.3:-94693238 MS.gene064876:CDS
GGATTCACATTCAGCATCAA+CGG 0.539105 3.3:+94694344 None:intergenic
GCTCAGTAAACCTCTCAAAT+GGG 0.539806 3.3:-94695157 MS.gene064876:CDS
CCCACCACCGCCGCCTCCGG+TGG 0.540370 3.3:-94695496 MS.gene064876:CDS
TTAGCTTCTTTGACAGGCGC+CGG 0.542076 3.3:+94695081 None:intergenic
ATTTCGGTGATGATTGGAAG+AGG 0.544103 3.3:-94694509 MS.gene064876:CDS
AACTAAACTGACCTTCTCAC+AGG 0.545557 3.3:+94695011 None:intergenic
GCTAGGGACTAGTATTAAGT+TGG 0.546014 3.3:+94695428 None:intergenic
GGTTTACTGAGCGAAGAAGA+AGG 0.548651 3.3:+94695168 None:intergenic
TTCTGCTTTGGCAGGGACGG+AGG 0.550159 3.3:-94693913 MS.gene064876:CDS
TGCAAATTTACAGCTTGAGA+AGG 0.556628 3.3:-94693535 MS.gene064876:CDS
TTCCGCAGAATCTCCTTCTC+CGG 0.556844 3.3:-94695100 MS.gene064876:CDS
CGAATCTTCCAAGAACCCTA+GGG 0.558609 3.3:-94695349 MS.gene064876:CDS
CCTTGCTGCAATGTATTCCT+CGG 0.560596 3.3:+94693810 None:intergenic
ATGTATTCCTCGGAAATGAC+CGG 0.561368 3.3:+94693820 None:intergenic
TTGCTCATCAAGTTGTTGGT+AGG 0.563248 3.3:-94694485 MS.gene064876:CDS
CCGTCCCTGCCAAAGCAGAA+AGG 0.564962 3.3:+94693916 None:intergenic
GGCGGCGGTGGTGGGTTCGA+GGG 0.565038 3.3:+94695504 None:intergenic
AGGCACGACGGTTCTGTTTG+GGG 0.565942 3.3:+94695575 None:intergenic
TATTAAGTTGGCGTCGCTAG+AGG 0.569207 3.3:+94695440 None:intergenic
TAATACAGAATTCAAGAGAG+TGG 0.570887 3.3:-94694601 MS.gene064876:CDS
GAGAACCATCTTGAGTGGCT+AGG 0.580360 3.3:+94695411 None:intergenic
GACGGAGGTTGCACAAGCTG+CGG 0.582049 3.3:-94693898 MS.gene064876:CDS
AATGCTTCAGATTCTATCCA+AGG 0.586687 3.3:-94693570 MS.gene064876:CDS
CAAGAGAGTGGAGATAAGTG+AGG 0.590112 3.3:-94694589 MS.gene064876:CDS
ACTTCAGGTTTCGCCACCGG+AGG 0.593361 3.3:+94695483 None:intergenic
TAGTCCCTAGCCACTCAAGA+TGG 0.598302 3.3:-94695416 MS.gene064876:CDS
TTAATTACCGGTCATTTCCG+AGG 0.609744 3.3:-94693827 MS.gene064876:CDS
TTTCGGTGATGATTGGAAGA+GGG 0.613337 3.3:-94694508 MS.gene064876:CDS
AATGTGTCTCACACCTCTTG+CGG 0.617103 3.3:-94694289 MS.gene064876:CDS
GAGGGAGGCGGAGTAGTAGT+CGG 0.620100 3.3:+94695522 None:intergenic
GGATTGCTAGCATCCGCAAG+AGG 0.621759 3.3:+94694276 None:intergenic
CCACTCAAGATGGTTCTCAT+GGG 0.624877 3.3:-94695406 MS.gene064876:CDS
CGCCGGAGAAGGAGATTCTG+CGG 0.634496 3.3:+94695098 None:intergenic
CCGAGGAATACATTGCAGCA+AGG 0.638324 3.3:-94693810 MS.gene064876:intron
TGAATCCGAAACTGTTGCGT+CGG 0.639096 3.3:-94694328 MS.gene064876:CDS
CGGAGGTTGAGGTGTTCCGG+TGG 0.643233 3.3:+94695542 None:intergenic
CCCATGAGAACCATCTTGAG+TGG 0.645166 3.3:+94695406 None:intergenic
GTTCCGGTGGCGGAAGACGG+AGG 0.648161 3.3:+94695555 None:intergenic
GAAGCTAAGAGAATCTGTAG+TGG 0.654963 3.3:-94695066 MS.gene064876:CDS
AGTTGTTGGTAGGACCGACA+AGG 0.658858 3.3:-94694475 MS.gene064876:CDS
TCACATTCAGCATCAACGGG+AGG 0.659217 3.3:+94694348 None:intergenic
GGAGGCGGAGTAGTAGTCGG+AGG 0.661488 3.3:+94695525 None:intergenic
GATGTTCGCAAAACCCTAGT+CGG 0.661918 3.3:-94695255 MS.gene064876:CDS
ATAATATGACGTTGTGTGCG+AGG 0.667737 3.3:-94694659 MS.gene064876:CDS
TGAGAAGGAAGAATCAGACG+TGG 0.680762 3.3:-94693520 MS.gene064876:CDS
AAAACCCTAGTCGGTGACGT+TGG 0.681388 3.3:-94695246 MS.gene064876:CDS
GGCGGAAGACGGAGGCACGA+CGG 0.688333 3.3:+94695563 None:intergenic
GCTGCTGTTGCATCCAATGG+TGG 0.695124 3.3:-94693594 MS.gene064876:CDS
TCAGAACCATCATCAATGCG+AGG 0.698974 3.3:+94694381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATATTTTCATGATT+TGG + chr3.3:94693944-94693963 None:intergenic 10.0%
!!! ATAATTTGAAATGTGAATTT+CGG - chr3.3:94694116-94694135 MS.gene064876:intron 15.0%
!! AATCAACTAGAATTAATTAC+CGG - chr3.3:94694965-94694984 MS.gene064876:intron 20.0%
!! AATCTGTCATATATCTTAAT+AGG - chr3.3:94695074-94695093 MS.gene064876:CDS 20.0%
!! ATCTGTCATATATCTTAATA+GGG - chr3.3:94695075-94695094 MS.gene064876:CDS 20.0%
!! ATTTGTGTGTTATAATGTTT+GGG - chr3.3:94694624-94694643 MS.gene064876:CDS 20.0%
!! CCAATCATATATGTATTTAA+TGG + chr3.3:94694033-94694052 None:intergenic 20.0%
!! CCATTAAATACATATATGAT+TGG - chr3.3:94694030-94694049 MS.gene064876:intron 20.0%
!! GAAATTCACATTTCAAATTA+TGG + chr3.3:94694117-94694136 None:intergenic 20.0%
!! TAAACAATTCAAAGAAAACA+AGG + chr3.3:94694590-94694609 None:intergenic 20.0%
!! TAATAATCTTTGCTGAATAT+TGG - chr3.3:94695396-94695415 MS.gene064876:CDS 20.0%
!! TTAAAATTAGTTGTATGACA+TGG - chr3.3:94693959-94693978 MS.gene064876:intron 20.0%
!! TTATTTGTTCAAATTATTGC+AGG - chr3.3:94694858-94694877 MS.gene064876:intron 20.0%
!!! AAAATATTTTCATGATTTGG+CGG + chr3.3:94693941-94693960 None:intergenic 20.0%
! AAATCATTTGTCATTCAACA+AGG + chr3.3:94694812-94694831 None:intergenic 25.0%
! AATCATTTGTCATTCAACAA+GGG + chr3.3:94694811-94694830 None:intergenic 25.0%
! AGAACAATTGGAATTTGATT+CGG + chr3.3:94694700-94694719 None:intergenic 25.0%
! CATTTGTGTGTTATAATGTT+TGG - chr3.3:94694623-94694642 MS.gene064876:CDS 25.0%
! TCTATAGATGAAAAATATCC+AGG - chr3.3:94695427-94695446 MS.gene064876:CDS 25.0%
! TTTGTGTGTTATAATGTTTG+GGG - chr3.3:94694625-94694644 MS.gene064876:CDS 25.0%
!!! CGATTTAGTGTTTTATTTGA+TGG - chr3.3:94695355-94695374 MS.gene064876:CDS 25.0%
!!! TCTAGTTGATTTGTAAACAT+TGG + chr3.3:94694956-94694975 None:intergenic 25.0%
AATCCGAGTTTAAAGATTTC+CGG + chr3.3:94695160-94695179 None:intergenic 30.0%
ATAAAAGATTGAGCTGATCA+AGG + chr3.3:94695535-94695554 None:intergenic 30.0%
ATTCGTGGAAATTATCGAAT+TGG - chr3.3:94694174-94694193 MS.gene064876:intron 30.0%
CTGTCTTAATTCTTAGTAGT+TGG - chr3.3:94694727-94694746 MS.gene064876:intron 30.0%
CTTGAAGCTATTACGAATTT+CGG - chr3.3:94694279-94694298 MS.gene064876:CDS 30.0%
GAATCAAATTCCAATTGTTC+TGG - chr3.3:94694699-94694718 MS.gene064876:intron 30.0%
TAATACAGAATTCAAGAGAG+TGG - chr3.3:94694203-94694222 MS.gene064876:intron 30.0%
TAATAGGGTTTATCTCGAAA+TGG - chr3.3:94695090-94695109 MS.gene064876:CDS 30.0%
TGTAGTATTTGTAAACCCTA+GGG + chr3.3:94693473-94693492 None:intergenic 30.0%
TTGATTACGTGTAGCATTAA+AGG - chr3.3:94694665-94694684 MS.gene064876:intron 30.0%
! GTACACTTCATTAGTTTGAA+TGG - chr3.3:94695132-94695151 MS.gene064876:CDS 30.0%
! TCGGATTTTCTCATTAGAAA+TGG - chr3.3:94695173-94695192 MS.gene064876:CDS 30.0%
! TTCATTAGTTTGAATGGTTC+CGG - chr3.3:94695138-94695157 MS.gene064876:CDS 30.0%
! TTTTCAGATTCAATCCTAAC+AGG - chr3.3:94693511-94693530 MS.gene064876:CDS 30.0%
!! AAAAAATGAATGGACTGAGA+AGG - chr3.3:94694242-94694261 MS.gene064876:intron 30.0%
!! CTTTGATTTTCTTGAAGCTT+GGG - chr3.3:94693596-94693615 MS.gene064876:CDS 30.0%
!! TCTTTGATTTTCTTGAAGCT+TGG - chr3.3:94693595-94693614 MS.gene064876:CDS 30.0%
!! TTTGATTTTCTTGAAGCTTG+GGG - chr3.3:94693597-94693616 MS.gene064876:CDS 30.0%
AATGCTTCAGATTCTATCCA+AGG - chr3.3:94695234-94695253 MS.gene064876:CDS 35.0%
ATAACCTGGGCTAAGATTAT+AGG - chr3.3:94695029-94695048 MS.gene064876:CDS 35.0%
ATTCTCTTAGCTTCTTTGAC+AGG + chr3.3:94693732-94693751 None:intergenic 35.0%
CAAAATTGATAAGCTTGTCC+TGG + chr3.3:94695448-94695467 None:intergenic 35.0%
CTGTAGTATTTGTAAACCCT+AGG + chr3.3:94693474-94693493 None:intergenic 35.0%
CTTTGCTGAATATTGGATGT+TGG - chr3.3:94695403-94695422 MS.gene064876:CDS 35.0%
GAATCTGAAAAACTTGACGA+TGG + chr3.3:94693502-94693521 None:intergenic 35.0%
GAGAAGGCAATCATGTAAAA+AGG - chr3.3:94695582-94695601 MS.gene064876:CDS 35.0%
GTGAGAATGACATATAACCT+GGG - chr3.3:94695016-94695035 MS.gene064876:intron 35.0%
GTGAGGAGACAAAAAATGAA+TGG - chr3.3:94694232-94694251 MS.gene064876:intron 35.0%
GTTCCGGAAATCTTTAAACT+CGG - chr3.3:94695154-94695173 MS.gene064876:CDS 35.0%
TCTTTATCTTCCCATTTGAG+AGG + chr3.3:94693660-94693679 None:intergenic 35.0%
TGCAAATTTACAGCTTGAGA+AGG - chr3.3:94695269-94695288 MS.gene064876:CDS 35.0%
TTACGAATTTCGGTGATGAT+TGG - chr3.3:94694289-94694308 MS.gene064876:CDS 35.0%
! GGACAAGCTTATCAATTTTG+AGG - chr3.3:94695448-94695467 MS.gene064876:CDS 35.0%
! GTGAATGTGATTTTCCTGTT+AGG + chr3.3:94693528-94693547 None:intergenic 35.0%
! TTTTACATGATTGCCTTCTC+CGG + chr3.3:94695582-94695601 None:intergenic 35.0%
!!! CGTTTTTTAGAGCTTCCTTT+TGG - chr3.3:94694363-94694382 MS.gene064876:CDS 35.0%
!!! TGGCGGAATACAAAGTTTTT+TGG + chr3.3:94693924-94693943 None:intergenic 35.0%
AACTAAACTGACCTTCTCAC+AGG + chr3.3:94693796-94693815 None:intergenic 40.0%
AGATCCTATAATCTTAGCCC+AGG + chr3.3:94695036-94695055 None:intergenic 40.0%
ATAATATGACGTTGTGTGCG+AGG - chr3.3:94694145-94694164 MS.gene064876:intron 40.0%
ATGTATTCCTCGGAAATGAC+CGG + chr3.3:94694987-94695006 None:intergenic 40.0%
ATTTCGGTGATGATTGGAAG+AGG - chr3.3:94694295-94694314 MS.gene064876:CDS 40.0%
CGTGGAAAAAGCAATTTCTG+AGG - chr3.3:94695302-94695321 MS.gene064876:CDS 40.0%
CTGCAAAAATCTCTGTGTCA+TGG - chr3.3:94693761-94693780 MS.gene064876:intron 40.0%
GAAGCTAAGAGAATCTGTAG+TGG - chr3.3:94693738-94693757 MS.gene064876:intron 40.0%
GAAGTGTACACGATGAACAT+TGG + chr3.3:94695121-94695140 None:intergenic 40.0%
GATTCACATTCAGCATCAAC+GGG + chr3.3:94694462-94694481 None:intergenic 40.0%
GCTCAGTAAACCTCTCAAAT+GGG - chr3.3:94693647-94693666 MS.gene064876:intron 40.0%
GGATTCACATTCAGCATCAA+CGG + chr3.3:94694463-94694482 None:intergenic 40.0%
GGTGAGAATGACATATAACC+TGG - chr3.3:94695015-94695034 MS.gene064876:intron 40.0%
TGAGGATTTAGACGTGCTAA+TGG - chr3.3:94695466-94695485 MS.gene064876:CDS 40.0%
TGCAGAAACTGATCACCAAA+AGG + chr3.3:94694381-94694400 None:intergenic 40.0%
TGGAAGATTCGGGAATGTTA+CGG + chr3.3:94693446-94693465 None:intergenic 40.0%
TGTATGACATGGCAGATTGA+TGG - chr3.3:94693970-94693989 MS.gene064876:intron 40.0%
TTAATGACTGTGCTCTGACA+CGG - chr3.3:94694760-94694779 MS.gene064876:intron 40.0%
TTAATTACCGGTCATTTCCG+AGG - chr3.3:94694977-94694996 MS.gene064876:intron 40.0%
TTGCACGCAATAAAGATCCT+TGG + chr3.3:94695254-94695273 None:intergenic 40.0%
TTTATCCGACGCAACAGTTT+CGG + chr3.3:94694484-94694503 None:intergenic 40.0%
TTTCGGTGATGATTGGAAGA+GGG - chr3.3:94694296-94694315 MS.gene064876:CDS 40.0%
TTTGTAAACCCTAGGGTTCT+TGG + chr3.3:94693466-94693485 None:intergenic 40.0%
TTTGTCATTCAACAAGGGAC+TGG + chr3.3:94694806-94694825 None:intergenic 40.0%
! ATCTGAAGCATTACCACCAT+TGG + chr3.3:94695226-94695245 None:intergenic 40.0%
! GCAGATTGATGGTTTCTTAG+CGG - chr3.3:94693981-94694000 MS.gene064876:intron 40.0%
! GCTAGGGACTAGTATTAAGT+TGG + chr3.3:94693379-94693398 None:intergenic 40.0%
! TTGCTCATCAAGTTGTTGGT+AGG - chr3.3:94694319-94694338 MS.gene064876:CDS 40.0%
!! TTCTGAGGTTACAGAAGTTC+AGG - chr3.3:94695317-94695336 MS.gene064876:CDS 40.0%
!!! AGGTTTTGGGTTCTGGTAAT+GGG + chr3.3:94693347-94693366 None:intergenic 40.0%
AAAACATCTGCACCAACGAC+CGG - chr3.3:94695560-94695579 MS.gene064876:CDS 45.0%
AATGTGTCTCACACCTCTTG+CGG - chr3.3:94694515-94694534 MS.gene064876:CDS 45.0%
ACGAGCAACACATTCCTTGT+CGG + chr3.3:94694346-94694365 None:intergenic 45.0%
ACGGATTTCGCATTCGTGAA+TGG + chr3.3:94693427-94693446 None:intergenic 45.0%
AGAACCATCTTGAGTGGCTA+GGG + chr3.3:94693395-94693414 None:intergenic 45.0%
CAAGAGAGTGGAGATAAGTG+AGG - chr3.3:94694215-94694234 MS.gene064876:intron 45.0%
CCACTCAAGATGGTTCTCAT+GGG - chr3.3:94693398-94693417 MS.gene064876:intron 45.0%
CCTAGGGTTCTTGGAAGATT+CGG + chr3.3:94693457-94693476 None:intergenic 45.0%
CCTTGCTGCAATGTATTCCT+CGG + chr3.3:94694997-94695016 None:intergenic 45.0%
CGAATCTTCCAAGAACCCTA+GGG - chr3.3:94693455-94693474 MS.gene064876:intron 45.0%
CGCTCAGTAAACCTCTCAAA+TGG - chr3.3:94693646-94693665 MS.gene064876:intron 45.0%
CTAGGGTTCTTGGAAGATTC+GGG + chr3.3:94693456-94693475 None:intergenic 45.0%
CTTTCCTTTCTGCTTTGGCA+GGG - chr3.3:94694884-94694903 MS.gene064876:intron 45.0%
GAAAGAACCTGAGCCATGAT+AGG + chr3.3:94694552-94694571 None:intergenic 45.0%
GACAGCGATTCCAGAACAAT+TGG + chr3.3:94694712-94694731 None:intergenic 45.0%
GATGTTCGCAAAACCCTAGT+CGG - chr3.3:94693549-94693568 MS.gene064876:CDS 45.0%
GGATGCTAGCAATCCTATCA+TGG - chr3.3:94694536-94694555 MS.gene064876:CDS 45.0%
GGTTTACTGAGCGAAGAAGA+AGG + chr3.3:94693639-94693658 None:intergenic 45.0%
TAGCAATCCTATCATGGCTC+AGG - chr3.3:94694542-94694561 MS.gene064876:CDS 45.0%
TCAGAACCATCATCAATGCG+AGG + chr3.3:94694426-94694445 None:intergenic 45.0%
TCATGGCTCAGGTTCTTTCT+TGG - chr3.3:94694553-94694572 MS.gene064876:CDS 45.0%
TGAATCCGAAACTGTTGCGT+CGG - chr3.3:94694476-94694495 MS.gene064876:CDS 45.0%
TGAGAAGGAAGAATCAGACG+TGG - chr3.3:94695284-94695303 MS.gene064876:CDS 45.0%
! AGGGTTGCTCATCAAGTTGT+TGG - chr3.3:94694315-94694334 MS.gene064876:CDS 45.0%
! GACTAGGGTTTTGCGAACAT+CGG + chr3.3:94693550-94693569 None:intergenic 45.0%
!! TATTAAGTTGGCGTCGCTAG+AGG + chr3.3:94693367-94693386 None:intergenic 45.0%
!! TGTGCGAGGTGTTTTATTCG+TGG - chr3.3:94694159-94694178 MS.gene064876:intron 45.0%
!!! GAGGTTTTGGGTTCTGGTAA+TGG + chr3.3:94693348-94693367 None:intergenic 45.0%
AAAACCCTAGTCGGTGACGT+TGG - chr3.3:94693558-94693577 MS.gene064876:CDS 50.0%
ATCAATGCGAGGAGCAGACT+CGG + chr3.3:94694415-94694434 None:intergenic 50.0%
CCCATGAGAACCATCTTGAG+TGG + chr3.3:94693401-94693420 None:intergenic 50.0%
CCGAATCTTCCAAGAACCCT+AGG - chr3.3:94693454-94693473 MS.gene064876:intron 50.0%
CCGAGGAATACATTGCAGCA+AGG - chr3.3:94694994-94695013 MS.gene064876:intron 50.0%
GAGAACCATCTTGAGTGGCT+AGG + chr3.3:94693396-94693415 None:intergenic 50.0%
GATGCTGCTGTTGCATCCAA+TGG - chr3.3:94695207-94695226 MS.gene064876:CDS 50.0%
GCCACTCAAGATGGTTCTCA+TGG - chr3.3:94693397-94693416 MS.gene064876:intron 50.0%
GCTTTCCTTTCTGCTTTGGC+AGG - chr3.3:94694883-94694902 MS.gene064876:intron 50.0%
GGAAAAAGAACGCCAGCAGT+TGG - chr3.3:94695487-94695506 MS.gene064876:CDS 50.0%
TAGTCCCTAGCCACTCAAGA+TGG - chr3.3:94693388-94693407 MS.gene064876:intron 50.0%
TCACATTCAGCATCAACGGG+AGG + chr3.3:94694459-94694478 None:intergenic 50.0%
TCTTCGTTTGCTCCAACTGC+TGG + chr3.3:94695502-94695521 None:intergenic 50.0%
TTAGCTTCTTTGACAGGCGC+CGG + chr3.3:94693726-94693745 None:intergenic 50.0%
TTCCGCAGAATCTCCTTCTC+CGG - chr3.3:94693704-94693723 MS.gene064876:intron 50.0%
! AGTTGTTGGTAGGACCGACA+AGG - chr3.3:94694329-94694348 MS.gene064876:CDS 50.0%
! GGCTGCTTTCCTTTCTGCTT+TGG - chr3.3:94694879-94694898 MS.gene064876:intron 50.0%
! TCTGCTCCTCGCATTGATGA+TGG - chr3.3:94694417-94694436 MS.gene064876:CDS 50.0%
! TTGGCGTCGCTAGAGGTTTT+GGG + chr3.3:94693360-94693379 None:intergenic 50.0%
!! GGTTCTGGTAATGGGACTTC+AGG + chr3.3:94693339-94693358 None:intergenic 50.0%
!!! TCGCTAGAGGTTTTGGGTTC+TGG + chr3.3:94693354-94693373 None:intergenic 50.0%
AGGCACGACGGTTCTGTTTG+GGG + chr3.3:94693232-94693251 None:intergenic 55.0%
ATTCGATGCTGCGTCGGGTT+TGG + chr3.3:94693685-94693704 None:intergenic 55.0%
CCTTTCTGCTTTGGCAGGGA+CGG - chr3.3:94694888-94694907 MS.gene064876:intron 55.0%
GAGGCACGACGGTTCTGTTT+GGG + chr3.3:94693233-94693252 None:intergenic 55.0%
GCTGCTGTTGCATCCAATGG+TGG - chr3.3:94695210-94695229 MS.gene064876:CDS 55.0%
GGAGTAGTAGTCGGAGGTTG+AGG + chr3.3:94693276-94693295 None:intergenic 55.0%
GGATTGCTAGCATCCGCAAG+AGG + chr3.3:94694531-94694550 None:intergenic 55.0%
TGATTGCCTTCTCCGGTCGT+TGG + chr3.3:94695575-94695594 None:intergenic 55.0%
TGCGGAATTCGATGCTGCGT+CGG + chr3.3:94693691-94693710 None:intergenic 55.0%
! AGTCGGAGGTTGAGGTGTTC+CGG + chr3.3:94693268-94693287 None:intergenic 55.0%
! CGAACCAACGTCACCGACTA+GGG + chr3.3:94693565-94693584 None:intergenic 55.0%
! GACGGTTCTGTTTGGGGTTG+AGG + chr3.3:94693226-94693245 None:intergenic 55.0%
! GGCTTGCTTTGCCTGTGAGA+AGG - chr3.3:94693782-94693801 MS.gene064876:intron 55.0%
! GTTGGCGTCGCTAGAGGTTT+TGG + chr3.3:94693361-94693380 None:intergenic 55.0%
! TCGAACCAACGTCACCGACT+AGG + chr3.3:94693566-94693585 None:intergenic 55.0%
CCGTCCCTGCCAAAGCAGAA+AGG + chr3.3:94694891-94694910 None:intergenic 60.0%
CGCCGGAGAAGGAGATTCTG+CGG + chr3.3:94693709-94693728 None:intergenic 60.0%
GACGGAGGTTGCACAAGCTG+CGG - chr3.3:94694906-94694925 MS.gene064876:intron 60.0%
GAGGGAGGCGGAGTAGTAGT+CGG + chr3.3:94693285-94693304 None:intergenic 60.0%
GCGGAATTCGATGCTGCGTC+GGG + chr3.3:94693690-94693709 None:intergenic 60.0%
TCTGCACCAACGACCGGAGA+AGG - chr3.3:94695566-94695585 MS.gene064876:CDS 60.0%
TTCTGCTTTGGCAGGGACGG+AGG - chr3.3:94694891-94694910 MS.gene064876:intron 60.0%
! ACTTCAGGTTTCGCCACCGG+AGG + chr3.3:94693324-94693343 None:intergenic 60.0%
! AGGTTGAGGTGTTCCGGTGG+CGG + chr3.3:94693262-94693281 None:intergenic 60.0%
! GGAGGCACGACGGTTCTGTT+TGG + chr3.3:94693234-94693253 None:intergenic 60.0%
! GGGACTTCAGGTTTCGCCAC+CGG + chr3.3:94693327-94693346 None:intergenic 60.0%
!! TCTTTGACAGGCGCCGGAGA+AGG + chr3.3:94693720-94693739 None:intergenic 60.0%
GGAGGCGGAGTAGTAGTCGG+AGG + chr3.3:94693282-94693301 None:intergenic 65.0%
TCAGGTTTCGCCACCGGAGG+CGG + chr3.3:94693321-94693340 None:intergenic 65.0%
! CGGAGGTTGAGGTGTTCCGG+TGG + chr3.3:94693265-94693284 None:intergenic 65.0%
!! GGTGTTCCGGTGGCGGAAGA+CGG + chr3.3:94693255-94693274 None:intergenic 65.0%
GTGCCTCCGTCTTCCGCCAC+CGG - chr3.3:94693246-94693265 MS.gene064876:CDS 70.0%
! GGCGGAAGACGGAGGCACGA+CGG + chr3.3:94693244-94693263 None:intergenic 70.0%
!! GGTGGTGGGTTCGAGGGAGG+CGG + chr3.3:94693297-94693316 None:intergenic 70.0%
!! GTTCCGGTGGCGGAAGACGG+AGG + chr3.3:94693252-94693271 None:intergenic 70.0%
GAACCCACCACCGCCGCCTC+CGG - chr3.3:94693305-94693324 MS.gene064876:CDS 75.0%
GGTTTCGCCACCGGAGGCGG+CGG + chr3.3:94693318-94693337 None:intergenic 75.0%
!! AGGCGGCGGTGGTGGGTTCG+AGG + chr3.3:94693304-94693323 None:intergenic 75.0%
!! GGCGGCGGTGGTGGGTTCGA+GGG + chr3.3:94693303-94693322 None:intergenic 75.0%
!! GGCGGTGGTGGGTTCGAGGG+AGG + chr3.3:94693300-94693319 None:intergenic 75.0%
! CCACCGGAGGCGGCGGTGGT+GGG + chr3.3:94693311-94693330 None:intergenic 80.0%
! TTCGCCACCGGAGGCGGCGG+TGG + chr3.3:94693315-94693334 None:intergenic 80.0%
! CCCACCACCGCCGCCTCCGG+TGG - chr3.3:94693308-94693327 MS.gene064876:CDS 85.0%
! GCCACCGGAGGCGGCGGTGG+TGG + chr3.3:94693312-94693331 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 94693216 94695610 94693216 ID=MS.gene064876
chr3.3 mRNA 94693216 94695610 94693216 ID=MS.gene064876.t1;Parent=MS.gene064876
chr3.3 exon 94695023 94695610 94695023 ID=MS.gene064876.t1.exon1;Parent=MS.gene064876.t1
chr3.3 CDS 94695023 94695610 94695023 ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1
chr3.3 exon 94694263 94694682 94694263 ID=MS.gene064876.t1.exon2;Parent=MS.gene064876.t1
chr3.3 CDS 94694263 94694682 94694263 ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1
chr3.3 exon 94693811 94693946 94693811 ID=MS.gene064876.t1.exon3;Parent=MS.gene064876.t1
chr3.3 CDS 94693811 94693946 94693811 ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1
chr3.3 exon 94693488 94693618 94693488 ID=MS.gene064876.t1.exon4;Parent=MS.gene064876.t1
chr3.3 CDS 94693488 94693618 94693488 ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1
chr3.3 exon 94693216 94693392 94693216 ID=MS.gene064876.t1.exon5;Parent=MS.gene064876.t1
chr3.3 CDS 94693216 94693392 94693216 ID=cds.MS.gene064876.t1;Parent=MS.gene064876.t1
Gene Sequence

>MS.gene064876

ATGGCGACCTCAACCCCAAACAGAACCGTCGTGCCTCCGTCTTCCGCCACCGGAACACCTCAACCTCCGACTACTACTCCGCCTCCCTCGAACCCACCACCGCCGCCTCCGGTGGCGAAACCTGAAGTCCCATTACCAGAACCCAAAACCTCTAGCGACGCCAACTTAATACTAGTCCCTAGCCACTCAAGATGGTTCTCATGGGATTCCATTCACGAATGCGAAATCCGTAACATTCCCGAATCTTCCAAGAACCCTAGGGTTTACAAATACTACAGAAACTCCATCGTCAAGTTTTTCAGATTCAATCCTAACAGGAAAATCACATTCACCGATGTTCGCAAAACCCTAGTCGGTGACGTTGGTTCGATTCGAAGAGTCTTTGATTTTCTTGAAGCTTGGGGTTTAATCAATTATCATCCTTCTTCTTCGCTCAGTAAACCTCTCAAATGGGAAGATAAAGACACCAAACCCGACGCAGCATCGAATTCCGCAGAATCTCCTTCTCCGGCGCCTGTCAAAGAAGCTAAGAGAATCTGTAGTGGCTGCAAAAATCTCTGTGTCATGGCTTGCTTTGCCTGTGAGAAGGTCAGTTTAGTTAAAGATTTTTTACACTTTCAATCAATTGTGATTCTCGTATTTTTTTAAGAGAAAACAGAAGATGCATTGATGATGTAAAATAGTAAAATAATTTTACACTGACATCCAAAAAACTTTGTATTCCGCCAAATCATGAAAATATTTTAAAATTAGTTGTATGACATGGCAGATTGATGGTTTCTTAGCGGATGACAGTGTAAAACTCAATTTATCACCATTAAATACATATATGATTGGCTGTGATTTTTTTGACTGTGTAAAACTTTTATGCTGAGAGTGTATTGAAATTAAACTAATTCCATAATTTGAAATGTGAATTTCGGTGCAGAATAATATGACGTTGTGTGCGAGGTGTTTTATTCGTGGAAATTATCGAATTGGTATGAGTAATACAGAATTCAAGAGAGTGGAGATAAGTGAGGAGACAAAAAATGAATGGACTGAGAAGGAAACACTGAATCTTCTTGAAGCTATTACGAATTTCGGTGATGATTGGAAGAGGGTTGCTCATCAAGTTGTTGGTAGGACCGACAAGGAATGTGTTGCTCGTTTTTTAGAGCTTCCTTTTGGTGATCAGTTTCTGCATTATCAACACTCCGAGTCTGCTCCTCGCATTGATGATGGTTCTGATCAGTTGAAGCCTCCCGTTGATGCTGAATGTGAATCCGAAACTGTTGCGTCGGATAAATCTAGTAAGAGAATGTGTCTCACACCTCTTGCGGATGCTAGCAATCCTATCATGGCTCAGGTTCTTTCTTGGCTTAAAATTATCCTTGTTTTCTTTGAATTGTTTATTGTTATTGATTACATTTGTGTGTTATAATGTTTGGGGAAAAAATGAAACTTCATTTGATTACGTGTAGCATTAAAGGAACATGATACCGAATCAAATTCCAATTGTTCTGGAATCGCTGTCTTAATTCTTAGTAGTTGGTTGTTATTTGTTAATGACTGTGCTCTGACACGGTCTTTTGAAATTGATTGTAGCCAGTCCCTTGTTGAATGACAAATGATTTCTTTCAAGTTCTTGTGTCTTAAAAATTTATTTGTTCAAATTATTGCAGGCTGCTTTCCTTTCTGCTTTGGCAGGGACGGAGGTTGCACAAGCTGCGGCTCAAGCTGCTCTGACAAGTTTGTCCAATGTTTACAAATCAACTAGAATTAATTACCGGTCATTTCCGAGGAATACATTGCAGCAAGGTGAGAATGACATATAACCTGGGCTAAGATTATAGGATCTGAATGAATTTAAGCTGTCAATCTGTCATATATCTTAATAGGGTTTATCTCGAAATGGATGAACCAATGTTCATCGTGTACACTTCATTAGTTTGAATGGTTCCGGAAATCTTTAAACTCGGATTTTCTCATTAGAAATGGCGTTTCATGCAGATGCTGCTGTTGCATCCAATGGTGGTAATGCTTCAGATTCTATCCAAGGATCTTTATTGCGTGCAAATTTACAGCTTGAGAAGGAAGAATCAGACGTGGAAAAAGCAATTTCTGAGGTTACAGAAGTTCAGGTCTGTCATGTGTTAGCGATTTAGTGTTTTATTTGATGGTGTTTGTACTTATTAGTTTAATAATCTTTGCTGAATATTGGATGTTGGCTCTATAGATGAAAAATATCCAGGACAAGCTTATCAATTTTGAGGATTTAGACGTGCTAATGGAAAAAGAACGCCAGCAGTTGGAGCAAACGAAGAGTTTGTTTTTCCTTGATCAGCTCAATCTTTTATTTCGTAAAACATCTGCACCAACGACCGGAGAAGGCAATCATGTAAAAAGGAATTGA

Protein sequence

>MS.gene064876.t1

MATSTPNRTVVPPSSATGTPQPPTTTPPPSNPPPPPPVAKPEVPLPEPKTSSDANLILVPSHSRWFSWDSIHECEIRNIPESSKNPRVYKYYRNSIVKFFRFNPNRKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYHPSSSLSKPLKWEDKDTKPDAASNSAESPSPAPVKEAKRICSGCKNLCVMACFACEKNNMTLCARCFIRGNYRIGMSNTEFKRVEISEETKNEWTEKETLNLLEAITNFGDDWKRVAHQVVGRTDKECVARFLELPFGDQFLHYQHSESAPRIDDGSDQLKPPVDAECESETVASDKSSKRMCLTPLADASNPIMAQAAFLSALAGTEVAQAAAQAALTSLSNVYKSTRINYRSFPRNTLQQDAAVASNGGNASDSIQGSLLRANLQLEKEESDVEKAISEVTEVQMKNIQDKLINFEDLDVLMEKERQQLEQTKSLFFLDQLNLLFRKTSAPTTGEGNHVKRN