AlfalfaGEDB | MS.gene81646

M. sativa cultivar XinJiangDaYe / MS.gene81646

KEGG: K11649
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0097159 GO:1901363
PFAM: PF00249.34 PF04433.20 PF16495.8

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81646.t1	XP_003616869.1	88.4	447	38	1	1	447	1	433	2.60E-214	754.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81646.t1	Q84JG2	48.8	432	185	8	36	438	39	463	8.2e-100	365.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81646.t1	G7KH84	88.4	447	38	1	1	447	1	433	1.9e-214	754.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene81646	MS.gene030664	PPI
MS.gene065792	MS.gene81646	PPI
MS.gene006556	MS.gene81646	PPI
MS.gene030666	MS.gene81646	PPI
MS.gene23886	MS.gene81646	PPI
MS.gene97701	MS.gene81646	PPI
MS.gene81646	MS.gene70258	PPI
MS.gene91416	MS.gene81646	PPI
MS.gene031751	MS.gene81646	PPI
MS.gene049111	MS.gene81646	PPI
MS.gene027904	MS.gene81646	PPI
MS.gene00233	MS.gene81646	PPI
MS.gene70263	MS.gene81646	PPI
MS.gene81646	MS.gene58112	PPI
MS.gene28438	MS.gene81646	PPI
MS.gene66051	MS.gene81646	PPI
MS.gene67503	MS.gene81646	PPI
MS.gene81646	MS.gene78224	PPI
MS.gene81646	MS.gene68733	PPI
MS.gene006555	MS.gene81646	PPI
MS.gene065891	MS.gene81646	PPI
MS.gene65125	MS.gene81646	PPI
MS.gene29445	MS.gene81646	PPI
MS.gene26406	MS.gene81646	PPI
MS.gene81646	MS.gene024895	PPI
MS.gene056335	MS.gene81646	PPI
MS.gene006557	MS.gene81646	PPI
MS.gene92318	MS.gene81646	PPI
MS.gene015760	MS.gene81646	PPI
MS.gene81646	MS.gene78227	PPI
MS.gene58114	MS.gene81646	PPI
MS.gene038612	MS.gene81646	PPI
MS.gene027907	MS.gene81646	PPI
MS.gene68134	MS.gene81646	PPI
MS.gene063084	MS.gene81646	PPI
MS.gene64164	MS.gene81646	PPI
MS.gene58116	MS.gene81646	PPI
MS.gene99648	MS.gene81646	PPI
MS.gene030661	MS.gene81646	PPI
MS.gene28432	MS.gene81646	PPI
MS.gene017431	MS.gene81646	PPI
MS.gene89203	MS.gene81646	PPI
MS.gene068179	MS.gene81646	PPI
MS.gene97703	MS.gene81646	PPI
MS.gene014197	MS.gene81646	PPI
MS.gene81646	MS.gene027909	PPI
MS.gene81646	MS.gene70261	PPI
MS.gene81646	MS.gene80094	PPI
MS.gene91631	MS.gene81646	PPI
MS.gene009155	MS.gene81646	PPI
MS.gene78924	MS.gene81646	PPI
MS.gene26084	MS.gene81646	PPI
MS.gene39538	MS.gene81646	PPI
MS.gene81646	MS.gene04748	PPI
MS.gene78922	MS.gene81646	PPI
MS.gene071851	MS.gene81646	PPI
MS.gene47573	MS.gene81646	PPI
MS.gene28434	MS.gene81646	PPI
MS.gene81646	MS.gene73873	PPI
MS.gene000128	MS.gene81646	PPI
MS.gene58285	MS.gene81646	PPI
MS.gene057458	MS.gene81646	PPI
MS.gene81646	MS.gene64820	PPI
MS.gene059054	MS.gene81646	PPI
MS.gene063673	MS.gene81646	PPI
MS.gene81646	MS.gene67685	PPI
MS.gene70990	MS.gene81646	PPI
MS.gene031750	MS.gene81646	PPI
MS.gene05905	MS.gene81646	PPI
MS.gene065890	MS.gene81646	PPI
MS.gene068178	MS.gene81646	PPI
MS.gene021887	MS.gene81646	PPI
MS.gene006560	MS.gene81646	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81646.t1	MTR_5g085170	89.933	447	31	1	1	447	1	433	0.0	804
MS.gene81646.t1	MTR_3g116120	84.472	483	39	3	1	447	1	483	0.0	787
MS.gene81646.t1	MTR_6g053260	54.955	444	90	10	1	444	1	334	9.04e-128	386
MS.gene81646.t1	MTR_3g099000	33.220	295	133	7	35	267	6	298	3.31e-39	148
MS.gene81646.t1	MTR_4g069830	26.689	296	158	9	39	280	133	423	8.95e-23	102
MS.gene81646.t1	MTR_4g069830	26.689	296	158	9	39	280	133	423	9.04e-23	102

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81646.t1	AT2G33610	50.116	431	181	8	36	438	39	463	7.94e-134	394
MS.gene81646.t1	AT2G47620	28.310	491	249	15	39	429	7	494	1.86e-36	140
MS.gene81646.t1	AT1G21700	23.725	510	289	16	23	436	158	663	1.94e-36	142
MS.gene81646.t1	AT2G47620	34.559	272	128	9	39	263	7	275	5.56e-32	126
MS.gene81646.t1	AT4G34430	29.893	281	146	8	39	268	139	419	2.69e-21	97.4
MS.gene81646.t1	AT4G34430	29.893	281	146	8	39	268	139	419	2.79e-21	97.4
MS.gene81646.t1	AT4G34430	29.893	281	146	8	39	268	139	419	2.79e-21	97.4
MS.gene81646.t1	AT4G34430	29.893	281	146	8	39	268	139	419	2.82e-21	97.4

Find 101 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGAAGCTATTACAAATTTC+GGG	0.188443	5.1:+67041044	MS.gene81646:CDS
CTTGAAGCTATTACAAATTT+CGG	0.191024	5.1:+67041043	MS.gene81646:CDS
GTTGGCGTCGCCAGAGGTTT+TGG	0.205569	5.1:-67040477	None:intergenic
CGCTCAGTAAACCTCTGATA+TGG	0.237129	5.1:+67040765	MS.gene81646:CDS
GCTTTCCTTGCTGCTTTGGC+AGG	0.242107	5.1:+67041274	MS.gene81646:CDS
GGCTGCTTTCCTTGCTGCTT+TGG	0.313470	5.1:+67041270	MS.gene81646:CDS
TTTACCCGATGCAACAATTT+CGG	0.324809	5.1:-67041188	None:intergenic
TTTGTAAACCCTAGGGTTCT+TGG	0.330782	5.1:-67040582	None:intergenic
CCTAGGGTTCTTGGAAGATT+CGG	0.357797	5.1:-67040573	None:intergenic
GGAGGCTCGACGGTTCTATT+TGG	0.364466	5.1:-67040386	None:intergenic
GGTTCTGGTAATGGGACTTC+CGG	0.374955	5.1:-67040455	None:intergenic
CTAGGGTTCTTGGAAGATTC+GGG	0.380857	5.1:-67040572	None:intergenic
AATGTGTCTCACACCTCTTA+TGG	0.384773	5.1:+67041222	MS.gene81646:CDS
ACCGCCTCCGGTGGCGAAAC+CGG	0.394595	5.1:+67040436	MS.gene81646:CDS
TCTTCGTTTGCTCCAACTGC+TGG	0.408427	5.1:-67041603	None:intergenic
TCCGGTTTCGCCACCGGAGG+CGG	0.412679	5.1:-67040437	None:intergenic
TTACAAATTTCGGGGATGAT+TGG	0.415906	5.1:+67041053	MS.gene81646:CDS
GCAGATTCTCTTAGCTTCAT+TGG	0.416279	5.1:-67040852	None:intergenic
CCTTGCTGCTTTGGCAGGGA+CGG	0.431264	5.1:+67041279	MS.gene81646:CDS
ACGGATTTCGCATTCGTGAA+TGG	0.432570	5.1:-67040543	None:intergenic
CTTTCCTTGCTGCTTTGGCA+GGG	0.432830	5.1:+67041275	MS.gene81646:CDS
AACACTGCAACCACCGCCTC+CGG	0.442861	5.1:+67040424	MS.gene81646:CDS
AGGAGATTCTGTAGAATTTG+AGG	0.449273	5.1:-67040816	None:intergenic
TCTTGCTGCCATGTATTCCT+TGG	0.451986	5.1:-67041385	None:intergenic
GATGCTTCTGTTGCATCTGA+TGG	0.455596	5.1:+67041406	MS.gene81646:CDS
TTCTACAGAATCTCCTTCTC+TGG	0.459502	5.1:+67040823	MS.gene81646:CDS
AGGGTTGCTCATCAAGTTGT+TGG	0.467288	5.1:+67041079	MS.gene81646:CDS
ATTCTCTTAGCTTCATTGGC+AGG	0.470496	5.1:-67040848	None:intergenic
AAAGCAGCCTGAGCCATGAT+AGG	0.474193	5.1:-67041256	None:intergenic
GATTCACATTCAGCATCAAC+GGG	0.474269	5.1:-67041166	None:intergenic
AATCAACTAGAATTAATTAC+CGG	0.474504	5.1:+67041356	MS.gene81646:CDS
TCTAGTTGATTTGTAAACAT+TGG	0.479041	5.1:-67041344	None:intergenic
CAAAATTGATAAGCTTGTCC+TGG	0.486513	5.1:-67041549	None:intergenic
CTGTAGTATTTGTAAACCCT+AGG	0.490342	5.1:-67040590	None:intergenic
GGGACTTCCGGTTTCGCCAC+CGG	0.493960	5.1:-67040443	None:intergenic
GCTCAGTAAACCTCTGATAT+GGG	0.498668	5.1:+67040766	MS.gene81646:CDS
CCGAATCTTCCAAGAACCCT+AGG	0.500165	5.1:+67040573	MS.gene81646:CDS
GCCACTCAAGATGGTTCTCA+TGG	0.500382	5.1:+67040516	MS.gene81646:CDS
AAAACAACTGCACCAACGAC+TGG	0.502634	5.1:+67041664	MS.gene81646:CDS
TTGCACGCAATAGAGATCCT+TGG	0.503227	5.1:-67041450	None:intergenic
GGTTTCGCCACCGGAGGCGG+TGG	0.504542	5.1:-67040434	None:intergenic
GGATGCTAGCAATCCTATCA+TGG	0.508578	5.1:+67041243	MS.gene81646:CDS
CGGTGGTTGCAGTGTTTCGA+CGG	0.513001	5.1:-67040417	None:intergenic
TGCTGCTTTGGCAGGGACGG+AGG	0.513682	5.1:+67041282	MS.gene81646:CDS
ATTCGTGGGAACTATAGGAT+TGG	0.516233	5.1:+67040938	MS.gene81646:CDS
TGAATCCGAAATTGTTGCAT+CGG	0.526403	5.1:+67041183	MS.gene81646:CDS
TAGCAATCCTATCATGGCTC+AGG	0.529443	5.1:+67041249	MS.gene81646:CDS
GGATTGCTAGCATCCATAAG+AGG	0.529525	5.1:-67041235	None:intergenic
ACGAGCAACACATTCCTTGT+CGG	0.529759	5.1:-67041107	None:intergenic
GGCTTCAACTGATCGCCAAA+AGG	0.531669	5.1:-67041142	None:intergenic
TGTAGTATTTGTAAACCCTA+GGG	0.534357	5.1:-67040589	None:intergenic
AGAACCATCTTGAGTGGCTA+GGG	0.535119	5.1:-67040511	None:intergenic
TGGAACCAACGTCACCGACT+AGG	0.535199	5.1:-67040682	None:intergenic
TGATTGCCTTCTCCAGTCGT+TGG	0.538573	5.1:-67041676	None:intergenic
CGTCGTATTATTCTTATCAC+AGG	0.538639	5.1:-67040897	None:intergenic
GGATTCACATTCAGCATCAA+CGG	0.539105	5.1:-67041167	None:intergenic
ATACAAGATTGAGCTGATCA+AGG	0.541570	5.1:-67041636	None:intergenic
TTAATTACCGGTCATTTCCA+AGG	0.542958	5.1:+67041368	MS.gene81646:CDS
GGTTTACTGAGCGAAGAAGA+AGG	0.548651	5.1:-67040755	None:intergenic
ATTTCGGGGATGATTGGAAG+AGG	0.548838	5.1:+67041059	MS.gene81646:CDS
ATCTTGAGTGGCTAGGGACA+AGG	0.549549	5.1:-67040505	None:intergenic
TTACCAGAACCCAAAACCTC+TGG	0.550434	5.1:+67040467	MS.gene81646:CDS
TGAGGATTTAGACGTGCTGA+TGG	0.555586	5.1:+67041570	MS.gene81646:CDS
TGCAAATTTACAGCTTGAGA+AGG	0.556628	5.1:+67041468	MS.gene81646:CDS
CGAATCTTCCAAGAACCCTA+GGG	0.558609	5.1:+67040574	MS.gene81646:CDS
ATGTATTCCTTGGAAATGAC+CGG	0.559908	5.1:-67041375	None:intergenic
AAAATCAAAGACTCTTCGAA+TGG	0.560578	5.1:-67040702	None:intergenic
TCATTGGCAGGCACCAGAGA+AGG	0.560713	5.1:-67040836	None:intergenic
GGTCATTTCCAAGGAATACA+TGG	0.562781	5.1:+67041377	MS.gene81646:CDS
TTGCTCATCAAGTTGTTGGT+AGG	0.563248	5.1:+67041083	MS.gene81646:CDS
ACTGCACCAACGACTGGAGA+AGG	0.566486	5.1:+67041670	MS.gene81646:CDS
TGGAAGATTCGGGAATGTAA+CGG	0.569089	5.1:-67040562	None:intergenic
GAATCCGAAATTGTTGCATC+GGG	0.569452	5.1:+67041184	MS.gene81646:CDS
ATAATACGACGTTGTGTGCG+AGG	0.569617	5.1:+67040909	MS.gene81646:CDS
TAATACAGAATTCAAGAGAG+TGG	0.570887	5.1:+67040967	MS.gene81646:CDS
GAGAACCATCTTGAGTGGCT+AGG	0.580360	5.1:-67040512	None:intergenic
AGTGTTTCGACGGCGGAAGA+CGG	0.582593	5.1:-67040407	None:intergenic
AATGCTTCAGATTCTATCCA+AGG	0.586687	5.1:+67041433	MS.gene81646:CDS
GAGAATCTGCAGTGTCTGCA+TGG	0.586827	5.1:+67040865	MS.gene81646:CDS
TTGTCCCTAGCCACTCAAGA+TGG	0.586862	5.1:+67040507	MS.gene81646:CDS
ACTGCAACCACCGCCTCCGG+TGG	0.586976	5.1:+67040427	MS.gene81646:CDS
TCTTTATCTTCCCATATCAG+AGG	0.587798	5.1:-67040776	None:intergenic
CAAGAGAGTGGAGATAAGTG+AGG	0.590112	5.1:+67040979	MS.gene81646:CDS
GACGGTTCTATTTGGCGTTG+AGG	0.590322	5.1:-67040378	None:intergenic
GGCGGAAGACGGAGGCTCGA+CGG	0.590550	5.1:-67040396	None:intergenic
GATTATGTTGGCGTCGCCAG+AGG	0.591406	5.1:-67040483	None:intergenic
GCTAGGGACAAGGATTATGT+TGG	0.592687	5.1:-67040495	None:intergenic
TTTCGGGGATGATTGGAAGA+GGG	0.613337	5.1:+67041060	MS.gene81646:CDS
AAAATCCTAGTCGGTGACGT+TGG	0.616879	5.1:+67040677	MS.gene81646:CDS
TGAAGCTATTACAAATTTCG+GGG	0.621595	5.1:+67041045	MS.gene81646:CDS
TGAGAAGGAAGAATCAGACA+TGG	0.623723	5.1:+67041483	MS.gene81646:CDS
CCACTCAAGATGGTTCTCAT+GGG	0.624877	5.1:+67040517	MS.gene81646:CDS
TGGTTGCAGTGTTTCGACGG+CGG	0.630155	5.1:-67040414	None:intergenic
GCTTCTGTTGCATCTGATGG+TGG	0.632718	5.1:+67041409	MS.gene81646:CDS
ACTTCCGGTTTCGCCACCGG+AGG	0.635420	5.1:-67040440	None:intergenic
CCGTCCCTGCCAAAGCAGCA+AGG	0.638770	5.1:-67041279	None:intergenic
CCCATGAGAACCATCTTGAG+TGG	0.645166	5.1:-67040517	None:intergenic
GTTTCGACGGCGGAAGACGG+AGG	0.649104	5.1:-67040404	None:intergenic
AGTTGTTGGTAGGACCGACA+AGG	0.658858	5.1:+67041093	MS.gene81646:CDS
TCACATTCAGCATCAACGGG+AGG	0.659217	5.1:-67041163	None:intergenic
GATGTTCGCAAAATCCTAGT+CGG	0.674756	5.1:+67040668	MS.gene81646:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATCAACTAGAATTAATTAC+CGG	+	chr5.1:67041356-67041375	MS.gene81646:CDS	20.0%
!	CTTGAAGCTATTACAAATTT+CGG	+	chr5.1:67041043-67041062	MS.gene81646:CDS	25.0%
!	TTGAAGCTATTACAAATTTC+GGG	+	chr5.1:67041044-67041063	MS.gene81646:CDS	25.0%
!!!	TCTAGTTGATTTGTAAACAT+TGG	-	chr5.1:67041347-67041366	None:intergenic	25.0%
	AAAATCAAAGACTCTTCGAA+TGG	-	chr5.1:67040705-67040724	None:intergenic	30.0%
	AGTTCAGATGAAAAATATCC+AGG	+	chr5.1:67041531-67041550	MS.gene81646:CDS	30.0%
	CAACAGAAAAATCACATTCA+CGG	+	chr5.1:67040646-67040665	MS.gene81646:CDS	30.0%
	TAATACAGAATTCAAGAGAG+TGG	+	chr5.1:67040967-67040986	MS.gene81646:CDS	30.0%
	TGAAGCTATTACAAATTTCG+GGG	+	chr5.1:67041045-67041064	MS.gene81646:CDS	30.0%
	TGTAGTATTTGTAAACCCTA+GGG	-	chr5.1:67040592-67040611	None:intergenic	30.0%
!	GTGAATGTGATTTTTCTGTT+GGG	-	chr5.1:67040647-67040666	None:intergenic	30.0%
!!	CTTTGATTTTCTTGAAGCTT+GGG	+	chr5.1:67040715-67040734	MS.gene81646:CDS	30.0%
!!	TCTTTGATTTTCTTGAAGCT+TGG	+	chr5.1:67040714-67040733	MS.gene81646:CDS	30.0%
!!	TTTGATTTTCTTGAAGCTTG+GGG	+	chr5.1:67040716-67040735	MS.gene81646:CDS	30.0%
	AATGCTTCAGATTCTATCCA+AGG	+	chr5.1:67041433-67041452	MS.gene81646:CDS	35.0%
	AGGAGATTCTGTAGAATTTG+AGG	-	chr5.1:67040819-67040838	None:intergenic	35.0%
	ATACAAGATTGAGCTGATCA+AGG	-	chr5.1:67041639-67041658	None:intergenic	35.0%
	ATGTATTCCTTGGAAATGAC+CGG	-	chr5.1:67041378-67041397	None:intergenic	35.0%
	CAAAATTGATAAGCTTGTCC+TGG	-	chr5.1:67041552-67041571	None:intergenic	35.0%
	CGTCGTATTATTCTTATCAC+AGG	-	chr5.1:67040900-67040919	None:intergenic	35.0%
	CTGTAGTATTTGTAAACCCT+AGG	-	chr5.1:67040593-67040612	None:intergenic	35.0%
	GTGAGGAGACAAAAAATGAA+TGG	+	chr5.1:67040996-67041015	MS.gene81646:CDS	35.0%
	TCTTTATCTTCCCATATCAG+AGG	-	chr5.1:67040779-67040798	None:intergenic	35.0%
	TGAATCCGAAATTGTTGCAT+CGG	+	chr5.1:67041183-67041202	MS.gene81646:CDS	35.0%
	TGCAAATTTACAGCTTGAGA+AGG	+	chr5.1:67041468-67041487	MS.gene81646:CDS	35.0%
	TTAATTACCGGTCATTTCCA+AGG	+	chr5.1:67041368-67041387	MS.gene81646:CDS	35.0%
	TTACAAATTTCGGGGATGAT+TGG	+	chr5.1:67041053-67041072	MS.gene81646:CDS	35.0%
	TTTACCCGATGCAACAATTT+CGG	-	chr5.1:67041191-67041210	None:intergenic	35.0%
!	CGTGAATGTGATTTTTCTGT+TGG	-	chr5.1:67040648-67040667	None:intergenic	35.0%
!	GGACAAGCTTATCAATTTTG+AGG	+	chr5.1:67041552-67041571	MS.gene81646:CDS	35.0%
!!	CATGGAAAAAGCTATTTCTG+AGG	+	chr5.1:67041501-67041520	MS.gene81646:CDS	35.0%
!!	GACAAAAAATGAATGGACTG+AGG	+	chr5.1:67041003-67041022	MS.gene81646:CDS	35.0%
!!	GTTTTATTCGTGGGAACTAT+AGG	+	chr5.1:67040933-67040952	MS.gene81646:CDS	35.0%
	AATGTGTCTCACACCTCTTA+TGG	+	chr5.1:67041222-67041241	MS.gene81646:CDS	40.0%
	ATTCGTGGGAACTATAGGAT+TGG	+	chr5.1:67040938-67040957	MS.gene81646:CDS	40.0%
	ATTCTCTTAGCTTCATTGGC+AGG	-	chr5.1:67040851-67040870	None:intergenic	40.0%
	GAATCCGAAATTGTTGCATC+GGG	+	chr5.1:67041184-67041203	MS.gene81646:CDS	40.0%
	GATGTTCGCAAAATCCTAGT+CGG	+	chr5.1:67040668-67040687	MS.gene81646:CDS	40.0%
	GATTCACATTCAGCATCAAC+GGG	-	chr5.1:67041169-67041188	None:intergenic	40.0%
	GCAGATTCTCTTAGCTTCAT+TGG	-	chr5.1:67040855-67040874	None:intergenic	40.0%
	GCTCAGTAAACCTCTGATAT+GGG	+	chr5.1:67040766-67040785	MS.gene81646:CDS	40.0%
	GGATTCACATTCAGCATCAA+CGG	-	chr5.1:67041170-67041189	None:intergenic	40.0%
	GGTCATTTCCAAGGAATACA+TGG	+	chr5.1:67041377-67041396	MS.gene81646:CDS	40.0%
	TGAGAAGGAAGAATCAGACA+TGG	+	chr5.1:67041483-67041502	MS.gene81646:CDS	40.0%
	TGGAAGATTCGGGAATGTAA+CGG	-	chr5.1:67040565-67040584	None:intergenic	40.0%
	TTCTACAGAATCTCCTTCTC+TGG	+	chr5.1:67040823-67040842	MS.gene81646:CDS	40.0%
	TTTGTAAACCCTAGGGTTCT+TGG	-	chr5.1:67040585-67040604	None:intergenic	40.0%
!	TTGCTCATCAAGTTGTTGGT+AGG	+	chr5.1:67041083-67041102	MS.gene81646:CDS	40.0%
!!!	AGGTTTTGGGTTCTGGTAAT+GGG	-	chr5.1:67040466-67040485	None:intergenic	40.0%
!!!	CGTTTTCTAGAGCTTCCTTT+TGG	+	chr5.1:67041127-67041146	MS.gene81646:CDS	40.0%
	AAAACAACTGCACCAACGAC+TGG	+	chr5.1:67041664-67041683	MS.gene81646:CDS	45.0%
	AAAATCCTAGTCGGTGACGT+TGG	+	chr5.1:67040677-67040696	MS.gene81646:CDS	45.0%
	ACGAGCAACACATTCCTTGT+CGG	-	chr5.1:67041110-67041129	None:intergenic	45.0%
	ACGGATTTCGCATTCGTGAA+TGG	-	chr5.1:67040546-67040565	None:intergenic	45.0%
	AGAACCATCTTGAGTGGCTA+GGG	-	chr5.1:67040514-67040533	None:intergenic	45.0%
	ATAATACGACGTTGTGTGCG+AGG	+	chr5.1:67040909-67040928	MS.gene81646:CDS	45.0%
	ATTTCGGGGATGATTGGAAG+AGG	+	chr5.1:67041059-67041078	MS.gene81646:CDS	45.0%
	CAAGAGAGTGGAGATAAGTG+AGG	+	chr5.1:67040979-67040998	MS.gene81646:CDS	45.0%
	CCACTCAAGATGGTTCTCAT+GGG	+	chr5.1:67040517-67040536	MS.gene81646:CDS	45.0%
	CCTAGGGTTCTTGGAAGATT+CGG	-	chr5.1:67040576-67040595	None:intergenic	45.0%
	CGAATCTTCCAAGAACCCTA+GGG	+	chr5.1:67040574-67040593	MS.gene81646:CDS	45.0%
	CGCTCAGTAAACCTCTGATA+TGG	+	chr5.1:67040765-67040784	MS.gene81646:CDS	45.0%
	CTAGGGTTCTTGGAAGATTC+GGG	-	chr5.1:67040575-67040594	None:intergenic	45.0%
	GATGCTTCTGTTGCATCTGA+TGG	+	chr5.1:67041406-67041425	MS.gene81646:CDS	45.0%
	GCTAGGGACAAGGATTATGT+TGG	-	chr5.1:67040498-67040517	None:intergenic	45.0%
	GGATGCTAGCAATCCTATCA+TGG	+	chr5.1:67041243-67041262	MS.gene81646:CDS	45.0%
	GGATTGCTAGCATCCATAAG+AGG	-	chr5.1:67041238-67041257	None:intergenic	45.0%
	GGTTTACTGAGCGAAGAAGA+AGG	-	chr5.1:67040758-67040777	None:intergenic	45.0%
	TAGCAATCCTATCATGGCTC+AGG	+	chr5.1:67041249-67041268	MS.gene81646:CDS	45.0%
	TCTTGCTGCCATGTATTCCT+TGG	-	chr5.1:67041388-67041407	None:intergenic	45.0%
	TGAGGATTTAGACGTGCTGA+TGG	+	chr5.1:67041570-67041589	MS.gene81646:CDS	45.0%
	TTACCAGAACCCAAAACCTC+TGG	+	chr5.1:67040467-67040486	MS.gene81646:CDS	45.0%
	TTGCACGCAATAGAGATCCT+TGG	-	chr5.1:67041453-67041472	None:intergenic	45.0%
	TTTCGGGGATGATTGGAAGA+GGG	+	chr5.1:67041060-67041079	MS.gene81646:CDS	45.0%
!	AGGGTTGCTCATCAAGTTGT+TGG	+	chr5.1:67041079-67041098	MS.gene81646:CDS	45.0%
!!	GTGCGAGGTGTTTTATTCGT+GGG	+	chr5.1:67040924-67040943	MS.gene81646:CDS	45.0%
!!	TGTGCGAGGTGTTTTATTCG+TGG	+	chr5.1:67040923-67040942	MS.gene81646:CDS	45.0%
!!!	GAGGTTTTGGGTTCTGGTAA+TGG	-	chr5.1:67040467-67040486	None:intergenic	45.0%
	AAAGCAGCCTGAGCCATGAT+AGG	-	chr5.1:67041259-67041278	None:intergenic	50.0%
	ATCTTGAGTGGCTAGGGACA+AGG	-	chr5.1:67040508-67040527	None:intergenic	50.0%
	CCCATGAGAACCATCTTGAG+TGG	-	chr5.1:67040520-67040539	None:intergenic	50.0%
	CCGAATCTTCCAAGAACCCT+AGG	+	chr5.1:67040573-67040592	MS.gene81646:CDS	50.0%
	GACGGTTCTATTTGGCGTTG+AGG	-	chr5.1:67040381-67040400	None:intergenic	50.0%
	GAGAACCATCTTGAGTGGCT+AGG	-	chr5.1:67040515-67040534	None:intergenic	50.0%
	GAGAATCTGCAGTGTCTGCA+TGG	+	chr5.1:67040865-67040884	MS.gene81646:CDS	50.0%
	GCCACTCAAGATGGTTCTCA+TGG	+	chr5.1:67040516-67040535	MS.gene81646:CDS	50.0%
	GCTTCTGTTGCATCTGATGG+TGG	+	chr5.1:67041409-67041428	MS.gene81646:CDS	50.0%
	GGAAAAAGAACGCCAGCAGT+TGG	+	chr5.1:67041591-67041610	MS.gene81646:CDS	50.0%
	GGCTTCAACTGATCGCCAAA+AGG	-	chr5.1:67041145-67041164	None:intergenic	50.0%
	TCACATTCAGCATCAACGGG+AGG	-	chr5.1:67041166-67041185	None:intergenic	50.0%
	TCTTCGTTTGCTCCAACTGC+TGG	-	chr5.1:67041606-67041625	None:intergenic	50.0%
	TGATTGCCTTCTCCAGTCGT+TGG	-	chr5.1:67041679-67041698	None:intergenic	50.0%
	TTGTCCCTAGCCACTCAAGA+TGG	+	chr5.1:67040507-67040526	MS.gene81646:CDS	50.0%
!	AGTTGTTGGTAGGACCGACA+AGG	+	chr5.1:67041093-67041112	MS.gene81646:CDS	50.0%
!!	CTTTCCTTGCTGCTTTGGCA+GGG	+	chr5.1:67041275-67041294	MS.gene81646:CDS	50.0%
!!	GGTTCTGGTAATGGGACTTC+CGG	-	chr5.1:67040458-67040477	None:intergenic	50.0%
	ACTGCACCAACGACTGGAGA+AGG	+	chr5.1:67041670-67041689	MS.gene81646:CDS	55.0%
	AGTGTTTCGACGGCGGAAGA+CGG	-	chr5.1:67040410-67040429	None:intergenic	55.0%
	CGGTGGTTGCAGTGTTTCGA+CGG	-	chr5.1:67040420-67040439	None:intergenic	55.0%
	GATTATGTTGGCGTCGCCAG+AGG	-	chr5.1:67040486-67040505	None:intergenic	55.0%
	GGAGGCTCGACGGTTCTATT+TGG	-	chr5.1:67040389-67040408	None:intergenic	55.0%
	TCATTGGCAGGCACCAGAGA+AGG	-	chr5.1:67040839-67040858	None:intergenic	55.0%
	TGGTTGCAGTGTTTCGACGG+CGG	-	chr5.1:67040417-67040436	None:intergenic	55.0%
!	GGCTGCTTTCCTTGCTGCTT+TGG	+	chr5.1:67041270-67041289	MS.gene81646:CDS	55.0%
!	TGGAACCAACGTCACCGACT+AGG	-	chr5.1:67040685-67040704	None:intergenic	55.0%
!	TTGGCGTCGCCAGAGGTTTT+GGG	-	chr5.1:67040479-67040498	None:intergenic	55.0%
!!	GCTTTCCTTGCTGCTTTGGC+AGG	+	chr5.1:67041274-67041293	MS.gene81646:CDS	55.0%
!!!	TCGCCAGAGGTTTTGGGTTC+TGG	-	chr5.1:67040473-67040492	None:intergenic	55.0%
	AACACTGCAACCACCGCCTC+CGG	+	chr5.1:67040424-67040443	MS.gene81646:CDS	60.0%
!	GTTGGCGTCGCCAGAGGTTT+TGG	-	chr5.1:67040480-67040499	None:intergenic	60.0%
!!	CCTTGCTGCTTTGGCAGGGA+CGG	+	chr5.1:67041279-67041298	MS.gene81646:CDS	60.0%
	ACTTCCGGTTTCGCCACCGG+AGG	-	chr5.1:67040443-67040462	None:intergenic	65.0%
	CCGTCCCTGCCAAAGCAGCA+AGG	-	chr5.1:67041282-67041301	None:intergenic	65.0%
	GGGACTTCCGGTTTCGCCAC+CGG	-	chr5.1:67040446-67040465	None:intergenic	65.0%
	GTTTCGACGGCGGAAGACGG+AGG	-	chr5.1:67040407-67040426	None:intergenic	65.0%
!!	TGCTGCTTTGGCAGGGACGG+AGG	+	chr5.1:67041282-67041301	MS.gene81646:CDS	65.0%
	ACCGCCTCCGGTGGCGAAAC+CGG	+	chr5.1:67040436-67040455	MS.gene81646:CDS	70.0%
	ACTGCAACCACCGCCTCCGG+TGG	+	chr5.1:67040427-67040446	MS.gene81646:CDS	70.0%
	GGCGGAAGACGGAGGCTCGA+CGG	-	chr5.1:67040399-67040418	None:intergenic	70.0%
	TCCGGTTTCGCCACCGGAGG+CGG	-	chr5.1:67040440-67040459	None:intergenic	70.0%
	GGTTTCGCCACCGGAGGCGG+TGG	-	chr5.1:67040437-67040456	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	67040371	67041714	67040371	ID=MS.gene81646
chr5.1	mRNA	67040371	67041714	67040371	ID=MS.gene81646.t1;Parent=MS.gene81646
chr5.1	exon	67040371	67041714	67040371	ID=MS.gene81646.t1.exon1;Parent=MS.gene81646.t1
chr5.1	CDS	67040371	67041714	67040371	ID=cds.MS.gene81646.t1;Parent=MS.gene81646.t1

Gene Sequence

>MS.gene81646

ATGGCGACCTCAACGCCAAATAGAACCGTCGAGCCTCCGTCTTCCGCCGTCGAAACACTGCAACCACCGCCTCCGGTGGCGAAACCGGAAGTCCCATTACCAGAACCCAAAACCTCTGGCGACGCCAACATAATCCTTGTCCCTAGCCACTCAAGATGGTTCTCATGGGATTCCATTCACGAATGCGAAATCCGTTACATTCCCGAATCTTCCAAGAACCCTAGGGTTTACAAATACTACAGAAACTCTATCGTCAAGTTTTTCAGATTCAATCCCAACAGAAAAATCACATTCACGGATGTTCGCAAAATCCTAGTCGGTGACGTTGGTTCCATTCGAAGAGTCTTTGATTTTCTTGAAGCTTGGGGTTTAATCAATTATGATCCTTCTTCTTCGCTCAGTAAACCTCTGATATGGGAAGATAAAGATGCTAAACTCGACGCAGCCTCAAATTCTACAGAATCTCCTTCTCTGGTGCCTGCCAATGAAGCTAAGAGAATCTGCAGTGTCTGCATGGCTTGCTTTGCCTGTGATAAGAATAATACGACGTTGTGTGCGAGGTGTTTTATTCGTGGGAACTATAGGATTGGTATGAGTAATACAGAATTCAAGAGAGTGGAGATAAGTGAGGAGACAAAAAATGAATGGACTGAGGAAGAAACACTGAATCTTCTTGAAGCTATTACAAATTTCGGGGATGATTGGAAGAGGGTTGCTCATCAAGTTGTTGGTAGGACCGACAAGGAATGTGTTGCTCGTTTTCTAGAGCTTCCTTTTGGCGATCAGTTGAAGCCTCCCGTTGATGCTGAATGTGAATCCGAAATTGTTGCATCGGGTAAATCTAGTAAGAGAATGTGTCTCACACCTCTTATGGATGCTAGCAATCCTATCATGGCTCAGGCTGCTTTCCTTGCTGCTTTGGCAGGGACGGAGGTTGCACAAGCTGCAGCTCAAGCTGCTCTGACAAGTTTGTCCAATGTTTACAAATCAACTAGAATTAATTACCGGTCATTTCCAAGGAATACATGGCAGCAAGATGCTTCTGTTGCATCTGATGGTGGTAATGCTTCAGATTCTATCCAAGGATCTCTATTGCGTGCAAATTTACAGCTTGAGAAGGAAGAATCAGACATGGAAAAAGCTATTTCTGAGGTTATAGAAGTTCAGATGAAAAATATCCAGGACAAGCTTATCAATTTTGAGGATTTAGACGTGCTGATGGAAAAAGAACGCCAGCAGTTGGAGCAAACGAAGAATTTGTTTTTCCTTGATCAGCTCAATCTTGTATTTCGTAAAACAACTGCACCAACGACTGGAGAAGGCAATCATGTAAAAAGTAATTGA

Protein sequence

>MS.gene81646.t1

MATSTPNRTVEPPSSAVETLQPPPPVAKPEVPLPEPKTSGDANIILVPSHSRWFSWDSIHECEIRYIPESSKNPRVYKYYRNSIVKFFRFNPNRKITFTDVRKILVGDVGSIRRVFDFLEAWGLINYDPSSSLSKPLIWEDKDAKLDAASNSTESPSLVPANEAKRICSVCMACFACDKNNTTLCARCFIRGNYRIGMSNTEFKRVEISEETKNEWTEEETLNLLEAITNFGDDWKRVAHQVVGRTDKECVARFLELPFGDQLKPPVDAECESEIVASGKSSKRMCLTPLMDASNPIMAQAAFLAALAGTEVAQAAAQAALTSLSNVYKSTRINYRSFPRNTWQQDASVASDGGNASDSIQGSLLRANLQLEKEESDMEKAISEVIEVQMKNIQDKLINFEDLDVLMEKERQQLEQTKNLFFLDQLNLVFRKTTAPTTGEGNHVKSN