AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66836


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66836.t1 MTR_3g116120 97.723 483 11 0 1 483 1 483 0.0 971
MS.gene66836.t1 MTR_5g085170 81.366 483 40 3 1 483 1 433 0.0 760
MS.gene66836.t1 MTR_6g053260 53.015 481 78 13 1 480 1 334 8.84e-127 385
MS.gene66836.t1 MTR_3g099000 27.392 533 263 12 47 469 6 524 8.45e-54 189
MS.gene66836.t1 MTR_3g088480 25.581 516 281 18 56 474 170 679 4.42e-34 136
MS.gene66836.t1 MTR_4g069830 29.286 280 149 6 51 281 133 412 4.45e-28 119
MS.gene66836.t1 MTR_4g069830 29.286 280 149 6 51 281 133 412 4.87e-28 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66836.t1 AT2G33610 51.945 437 188 8 48 474 39 463 4.68e-146 426
MS.gene66836.t1 AT2G47620 28.340 494 269 12 51 465 7 494 1.31e-38 147
MS.gene66836.t1 AT1G21700 24.038 520 299 17 35 472 158 663 3.67e-37 145
MS.gene66836.t1 AT2G47620 30.226 354 185 9 51 348 7 354 1.91e-34 134
MS.gene66836.t1 AT4G34430 30.686 277 146 7 51 281 139 415 2.28e-25 110
MS.gene66836.t1 AT4G34430 30.686 277 146 7 51 281 139 415 2.43e-25 110
MS.gene66836.t1 AT4G34430 30.686 277 146 7 51 281 139 415 2.52e-25 110
MS.gene66836.t1 AT4G34430 30.686 277 146 7 51 281 139 415 2.52e-25 110

Find 121 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCGTCGCTAGAGGTTT+TGG 0.216425 3.4:+99049158 None:intergenic
CTTGAAGCTATTACGAATTT+CGG 0.268562 3.4:-99048237 MS.gene66836:CDS
GGCTGCTTTCCTTTCTGCTT+TGG 0.304195 3.4:-99047637 MS.gene66836:CDS
GGTTCTGGTAATGGGACTTC+AGG 0.304961 3.4:+99049180 None:intergenic
TTCTGAGGTTACAGAAGTTC+AGG 0.308719 3.4:-99047199 MS.gene66836:intron
GCCACCGGAGGCGGCGGTGG+TGG 0.310149 3.4:+99049207 None:intergenic
TTTGTAAACCCTAGGGTTCT+TGG 0.330782 3.4:+99049053 None:intergenic
AGGCGGCGGTGGTGGGTTCG+AGG 0.332048 3.4:+99049215 None:intergenic
GCTTTCCTTTCTGCTTTGGC+AGG 0.337459 3.4:-99047633 MS.gene66836:CDS
GAGAAGGCAATCATGTAAAA+AGG 0.339330 3.4:-99046934 MS.gene66836:CDS
TTTATCCGACGCAACAGTTT+CGG 0.342652 3.4:+99048035 None:intergenic
ATTCGTGGAAATTATCGAAT+TGG 0.350506 3.4:-99048342 MS.gene66836:CDS
GAGGCACGACGGTTCTGATT+GGG 0.357171 3.4:+99049286 None:intergenic
CCTAGGGTTCTTGGAAGATT+CGG 0.357797 3.4:+99049062 None:intergenic
CGCTCAGTAAACCTCTCAAA+TGG 0.370402 3.4:-99048870 MS.gene66836:CDS
CTAGGGTTCTTGGAAGATTC+GGG 0.380857 3.4:+99049063 None:intergenic
ATTCGATGATGCGTCGGGTT+TGG 0.397005 3.4:+99048834 None:intergenic
TTCGCCACCGGAGGCGGCGG+TGG 0.405270 3.4:+99049204 None:intergenic
AGTCGGAGGTTGAGGTGTTC+CGG 0.412366 3.4:+99049251 None:intergenic
TGAGGATTTAGACGTGCTAA+TGG 0.416011 3.4:-99047050 MS.gene66836:CDS
TTACGAATTTCGGTGATGAT+TGG 0.419721 3.4:-99048227 MS.gene66836:CDS
CCTTTCTGCTTTGGCAGGGA+CGG 0.421374 3.4:-99047628 MS.gene66836:CDS
GACGGTTCTGATTGGGGTTG+AGG 0.426682 3.4:+99049293 None:intergenic
TCTTCGTTTGCTCCAACTGC+TGG 0.436192 3.4:+99047017 None:intergenic
CCACCGGAGGCGGCGGTGGT+GGG 0.442186 3.4:+99049208 None:intergenic
GAAAGAACCTGAGCCATGAT+AGG 0.443755 3.4:+99047967 None:intergenic
TCAGGTTTCGCCACCGGAGG+CGG 0.443862 3.4:+99049198 None:intergenic
ACGGATTTCGCATTCGTGAA+TGG 0.445293 3.4:+99049092 None:intergenic
GGTGGTGGGTTCGAGGGAGG+CGG 0.448251 3.4:+99049222 None:intergenic
GGAGGCACGACGGTTCTGAT+TGG 0.459252 3.4:+99049285 None:intergenic
TGGAAGATTCGGGAATGTTA+CGG 0.464080 3.4:+99049073 None:intergenic
CTGTTGCGTCGGATAAATCT+AGG 0.464854 3.4:-99048029 MS.gene66836:CDS
TTGCACGCAATAAAGATCCT+TGG 0.465240 3.4:+99047265 None:intergenic
AGGGTTGCTCATCAAGTTGT+TGG 0.467288 3.4:-99048201 MS.gene66836:CDS
GAACCCACCACCGCCGCCTC+CGG 0.468860 3.4:-99049211 MS.gene66836:CDS
GTGCCTCCGTCTTCCGCCAC+CGG 0.470261 3.4:-99049270 MS.gene66836:CDS
ATCTGAAGCATTACCACCAT+TGG 0.471038 3.4:+99047293 None:intergenic
GATTCACATTCAGCATCAAC+GGG 0.474269 3.4:+99048057 None:intergenic
AATCAACTAGAATTAATTAC+CGG 0.474504 3.4:-99047551 MS.gene66836:CDS
GCGGAATTCGATGATGCGTC+GGG 0.478699 3.4:+99048829 None:intergenic
TCTAGTTGATTTGTAAACAT+TGG 0.479041 3.4:+99047563 None:intergenic
CGAACCAACGTCACCGACTA+GGG 0.480955 3.4:+99048954 None:intergenic
GGCGGTGGTGGGTTCGAGGG+AGG 0.482062 3.4:+99049219 None:intergenic
ATTCTCTTAGCTTCTTTGAC+AGG 0.485476 3.4:+99048787 None:intergenic
CAAAATTGATAAGCTTGTCC+TGG 0.486513 3.4:+99047071 None:intergenic
CTGTAGTATTTGTAAACCCT+AGG 0.490342 3.4:+99049045 None:intergenic
TCGAACCAACGTCACCGACT+AGG 0.492371 3.4:+99048953 None:intergenic
TCTGCTCCTCGCATTGATGA+TGG 0.492996 3.4:-99048099 MS.gene66836:CDS
CCGAATCTTCCAAGAACCCT+AGG 0.500165 3.4:-99049062 MS.gene66836:CDS
GCCACTCAAGATGGTTCTCA+TGG 0.500382 3.4:-99049119 MS.gene66836:CDS
GGTGTTCCGGTGGCGGAAGA+CGG 0.500983 3.4:+99049264 None:intergenic
AGGTTGAGGTGTTCCGGTGG+CGG 0.501069 3.4:+99049257 None:intergenic
TGCGGAATTCGATGATGCGT+CGG 0.502829 3.4:+99048828 None:intergenic
GGGACTTCAGGTTTCGCCAC+CGG 0.504355 3.4:+99049192 None:intergenic
GGTTTCGCCACCGGAGGCGG+CGG 0.509368 3.4:+99049201 None:intergenic
TCTTTGACAGGCGCCGGAGA+AGG 0.514796 3.4:+99048799 None:intergenic
CTTTCCTTTCTGCTTTGGCA+GGG 0.515547 3.4:-99047632 MS.gene66836:CDS
TGATTGCCTTCTCCGGTCGT+TGG 0.518632 3.4:+99046944 None:intergenic
GATGCTGCTGTTGCATCCAA+TGG 0.519252 3.4:-99047309 MS.gene66836:CDS
GGCTTGCTTTGCCTGTGAGA+AGG 0.520661 3.4:-99048734 MS.gene66836:intron
ATAAAAGATTGAGCTGATCA+AGG 0.521081 3.4:+99046984 None:intergenic
ACGAGCAACACATTCCTTGT+CGG 0.522938 3.4:+99048173 None:intergenic
GGAGTAGTAGTCGGAGGTTG+AGG 0.527129 3.4:+99049243 None:intergenic
ATCAATGCGAGGAGCAGACT+CGG 0.528293 3.4:+99048104 None:intergenic
GGATGCTAGCAATCCTATCA+TGG 0.529881 3.4:-99047980 MS.gene66836:CDS
TGCAGAAACTGATCACCAAA+AGG 0.531795 3.4:+99048138 None:intergenic
AGAACCATCTTGAGTGGCTA+GGG 0.532947 3.4:+99049124 None:intergenic
TAGCAATCCTATCATGGCTC+AGG 0.533854 3.4:-99047974 MS.gene66836:intron
TCTTTATCTTCCCATTTGAG+AGG 0.534057 3.4:+99048859 None:intergenic
TGTAGTATTTGTAAACCCTA+GGG 0.534357 3.4:+99049046 None:intergenic
AAAACATCTGCACCAACGAC+CGG 0.535739 3.4:-99046956 MS.gene66836:CDS
TCTGCACCAACGACCGGAGA+AGG 0.536832 3.4:-99046950 MS.gene66836:CDS
GGATTCACATTCAGCATCAA+CGG 0.539105 3.4:+99048056 None:intergenic
GCTCAGTAAACCTCTCAAAT+GGG 0.539806 3.4:-99048869 MS.gene66836:CDS
CCCACCACCGCCGCCTCCGG+TGG 0.540370 3.4:-99049208 MS.gene66836:CDS
TTAGCTTCTTTGACAGGCGC+CGG 0.542076 3.4:+99048793 None:intergenic
ATTTCGGTGATGATTGGAAG+AGG 0.544103 3.4:-99048221 MS.gene66836:CDS
AACTAAACTGACCTTCTCAC+AGG 0.545557 3.4:+99048723 None:intergenic
GCTAGGGACTAGTATTAAGT+TGG 0.546014 3.4:+99049140 None:intergenic
GGTTTACTGAGCGAAGAAGA+AGG 0.548651 3.4:+99048880 None:intergenic
TTCTGCTTTGGCAGGGACGG+AGG 0.550159 3.4:-99047625 MS.gene66836:CDS
TGCAAATTTACAGCTTGAGA+AGG 0.556628 3.4:-99047247 MS.gene66836:CDS
TTCCGCAGAATCTCCTTCTC+CGG 0.556844 3.4:-99048812 MS.gene66836:CDS
CGAATCTTCCAAGAACCCTA+GGG 0.558609 3.4:-99049061 MS.gene66836:CDS
CCTTGCTGCAATGTATTCCT+CGG 0.560596 3.4:+99047522 None:intergenic
ATGTATTCCTCGGAAATGAC+CGG 0.561368 3.4:+99047532 None:intergenic
TTGCTCATCAAGTTGTTGGT+AGG 0.563248 3.4:-99048197 MS.gene66836:CDS
CCGTCCCTGCCAAAGCAGAA+AGG 0.564962 3.4:+99047628 None:intergenic
GGCGGCGGTGGTGGGTTCGA+GGG 0.565038 3.4:+99049216 None:intergenic
TATTAAGTTGGCGTCGCTAG+AGG 0.569207 3.4:+99049152 None:intergenic
TAATACAGAATTCAAGAGAG+TGG 0.570887 3.4:-99048313 MS.gene66836:CDS
AGGCACGACGGTTCTGATTG+GGG 0.575751 3.4:+99049287 None:intergenic
GAGAACCATCTTGAGTGGCT+AGG 0.580360 3.4:+99049123 None:intergenic
GACGGAGGTTGCACAAGCTG+CGG 0.582049 3.4:-99047610 MS.gene66836:CDS
AATGCTTCAGATTCTATCCA+AGG 0.586687 3.4:-99047282 MS.gene66836:CDS
CAAGAGAGTGGAGATAAGTG+AGG 0.590112 3.4:-99048301 MS.gene66836:CDS
ACTTCAGGTTTCGCCACCGG+AGG 0.593361 3.4:+99049195 None:intergenic
TAGTCCCTAGCCACTCAAGA+TGG 0.598302 3.4:-99049128 MS.gene66836:CDS
TTAATTACCGGTCATTTCCG+AGG 0.609744 3.4:-99047539 MS.gene66836:CDS
TTTCGGTGATGATTGGAAGA+GGG 0.613337 3.4:-99048220 MS.gene66836:CDS
AATGTGTCTCACACCTCTTG+CGG 0.617103 3.4:-99048001 MS.gene66836:CDS
GAGGGAGGCGGAGTAGTAGT+CGG 0.620100 3.4:+99049234 None:intergenic
GGATTGCTAGCATCCGCAAG+AGG 0.621759 3.4:+99047988 None:intergenic
CCACTCAAGATGGTTCTCAT+GGG 0.624877 3.4:-99049118 MS.gene66836:CDS
CGCCGGAGAAGGAGATTCTG+CGG 0.634496 3.4:+99048810 None:intergenic
CCGAGGAATACATTGCAGCA+AGG 0.638324 3.4:-99047522 MS.gene66836:intron
TGAATCCGAAACTGTTGCGT+CGG 0.639096 3.4:-99048040 MS.gene66836:CDS
CGGAGGTTGAGGTGTTCCGG+TGG 0.643233 3.4:+99049254 None:intergenic
CCCATGAGAACCATCTTGAG+TGG 0.645166 3.4:+99049118 None:intergenic
GTTCCGGTGGCGGAAGACGG+AGG 0.648161 3.4:+99049267 None:intergenic
GAAGCTAAGAGAATCTGTAG+TGG 0.654963 3.4:-99048778 MS.gene66836:CDS
AGTTGTTGGTAGGACCGACA+AGG 0.658858 3.4:-99048187 MS.gene66836:CDS
TCACATTCAGCATCAACGGG+AGG 0.659217 3.4:+99048060 None:intergenic
GGAGGCGGAGTAGTAGTCGG+AGG 0.661488 3.4:+99049237 None:intergenic
GATGTTCGCAAAACCCTAGT+CGG 0.661918 3.4:-99048967 MS.gene66836:CDS
ATAATATGACGTTGTGTGCG+AGG 0.667737 3.4:-99048371 MS.gene66836:CDS
TGAGAAGGAAGAATCAGACG+TGG 0.680762 3.4:-99047232 MS.gene66836:CDS
AAAACCCTAGTCGGTGACGT+TGG 0.681388 3.4:-99048958 MS.gene66836:CDS
GGCGGAAGACGGAGGCACGA+CGG 0.688333 3.4:+99049275 None:intergenic
GCTGCTGTTGCATCCAATGG+TGG 0.695124 3.4:-99047306 MS.gene66836:CDS
TCAGAACCATCATCAATGCG+AGG 0.698974 3.4:+99048093 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATATTTTCATGATT+TGG + chr3.4:99047656-99047675 None:intergenic 10.0%
!!! ATAATTTGAAATGTGAATTT+CGG - chr3.4:99047828-99047847 MS.gene66836:intron 15.0%
!! AATCAACTAGAATTAATTAC+CGG - chr3.4:99048677-99048696 MS.gene66836:intron 20.0%
!! AATCTGTCATATATCTTAAT+AGG - chr3.4:99048786-99048805 MS.gene66836:CDS 20.0%
!! ATCTGTCATATATCTTAATA+GGG - chr3.4:99048787-99048806 MS.gene66836:CDS 20.0%
!! ATTTGTGTGTTATAATGTTT+GGG - chr3.4:99048336-99048355 MS.gene66836:CDS 20.0%
!! CCAATCATATATGTATTTAA+TGG + chr3.4:99047745-99047764 None:intergenic 20.0%
!! CCATTAAATACATATATGAT+TGG - chr3.4:99047742-99047761 MS.gene66836:intron 20.0%
!! GAAATTCACATTTCAAATTA+TGG + chr3.4:99047829-99047848 None:intergenic 20.0%
!! TAAACAATTCAAAGAAAACA+AGG + chr3.4:99048302-99048321 None:intergenic 20.0%
!! TAATAATCTTTGCTGAATAT+TGG - chr3.4:99049108-99049127 MS.gene66836:CDS 20.0%
!! TTAAAATTAGTTGTATGACA+TGG - chr3.4:99047671-99047690 MS.gene66836:intron 20.0%
!! TTATTTGTTCAAATTATTGC+AGG - chr3.4:99048570-99048589 MS.gene66836:intron 20.0%
!!! AAAATATTTTCATGATTTGG+CGG + chr3.4:99047653-99047672 None:intergenic 20.0%
! AAATCATTTGTCATTCAACA+AGG + chr3.4:99048524-99048543 None:intergenic 25.0%
! AATCATTTGTCATTCAACAA+GGG + chr3.4:99048523-99048542 None:intergenic 25.0%
! AGAACAATTGGAATTTGATT+CGG + chr3.4:99048412-99048431 None:intergenic 25.0%
! CATTTGTGTGTTATAATGTT+TGG - chr3.4:99048335-99048354 MS.gene66836:CDS 25.0%
! TCTATAGATGAAAAATATCC+AGG - chr3.4:99049139-99049158 MS.gene66836:CDS 25.0%
! TTTGTGTGTTATAATGTTTG+GGG - chr3.4:99048337-99048356 MS.gene66836:CDS 25.0%
!!! CGATTTAGTGTTTTATTTGA+TGG - chr3.4:99049067-99049086 MS.gene66836:CDS 25.0%
!!! TCTAGTTGATTTGTAAACAT+TGG + chr3.4:99048668-99048687 None:intergenic 25.0%
AATCCGAGTTTAAAGATTTC+CGG + chr3.4:99048872-99048891 None:intergenic 30.0%
ATAAAAGATTGAGCTGATCA+AGG + chr3.4:99049247-99049266 None:intergenic 30.0%
ATTCGTGGAAATTATCGAAT+TGG - chr3.4:99047886-99047905 MS.gene66836:intron 30.0%
CTGTCTTAATTCTTAGTAGT+TGG - chr3.4:99048439-99048458 MS.gene66836:intron 30.0%
CTTGAAGCTATTACGAATTT+CGG - chr3.4:99047991-99048010 MS.gene66836:CDS 30.0%
GAATCAAATTCCAATTGTTC+TGG - chr3.4:99048411-99048430 MS.gene66836:intron 30.0%
TAATACAGAATTCAAGAGAG+TGG - chr3.4:99047915-99047934 MS.gene66836:intron 30.0%
TAATAGGGTTTATCTCGAAA+TGG - chr3.4:99048802-99048821 MS.gene66836:CDS 30.0%
TGTAGTATTTGTAAACCCTA+GGG + chr3.4:99047185-99047204 None:intergenic 30.0%
TTGATTACGTGTAGCATTAA+AGG - chr3.4:99048377-99048396 MS.gene66836:intron 30.0%
! GTACACTTCATTAGTTTGAA+TGG - chr3.4:99048844-99048863 MS.gene66836:CDS 30.0%
! TCGGATTTTCTCATTAGAAA+TGG - chr3.4:99048885-99048904 MS.gene66836:CDS 30.0%
! TTCATTAGTTTGAATGGTTC+CGG - chr3.4:99048850-99048869 MS.gene66836:CDS 30.0%
! TTTTCAGATTCAATCCTAAC+AGG - chr3.4:99047223-99047242 MS.gene66836:CDS 30.0%
!! AAAAAATGAATGGACTGAGA+AGG - chr3.4:99047954-99047973 MS.gene66836:intron 30.0%
!! CTTTGATTTTCTTGAAGCTT+GGG - chr3.4:99047308-99047327 MS.gene66836:CDS 30.0%
!! TCTTTGATTTTCTTGAAGCT+TGG - chr3.4:99047307-99047326 MS.gene66836:CDS 30.0%
!! TTTGATTTTCTTGAAGCTTG+GGG - chr3.4:99047309-99047328 MS.gene66836:CDS 30.0%
AAATCCTATAATCTTAGCCC+AGG + chr3.4:99048748-99048767 None:intergenic 35.0%
AATGCTTCAGATTCTATCCA+AGG - chr3.4:99048946-99048965 MS.gene66836:CDS 35.0%
ATAACCTGGGCTAAGATTAT+AGG - chr3.4:99048741-99048760 MS.gene66836:CDS 35.0%
ATTCTCTTAGCTTCTTTGAC+AGG + chr3.4:99047444-99047463 None:intergenic 35.0%
CAAAATTGATAAGCTTGTCC+TGG + chr3.4:99049160-99049179 None:intergenic 35.0%
CTGTAGTATTTGTAAACCCT+AGG + chr3.4:99047186-99047205 None:intergenic 35.0%
CTTTGCTGAATATTGGATGT+TGG - chr3.4:99049115-99049134 MS.gene66836:CDS 35.0%
GAATCTGAAAAACTTGACGA+TGG + chr3.4:99047214-99047233 None:intergenic 35.0%
GAGAAGGCAATCATGTAAAA+AGG - chr3.4:99049294-99049313 MS.gene66836:CDS 35.0%
GTGAGAATGACATATAACCT+GGG - chr3.4:99048728-99048747 MS.gene66836:intron 35.0%
GTGAGGAGACAAAAAATGAA+TGG - chr3.4:99047944-99047963 MS.gene66836:intron 35.0%
GTTCCGGAAATCTTTAAACT+CGG - chr3.4:99048866-99048885 MS.gene66836:CDS 35.0%
TCTTTATCTTCCCATTTGAG+AGG + chr3.4:99047372-99047391 None:intergenic 35.0%
TGCAAATTTACAGCTTGAGA+AGG - chr3.4:99048981-99049000 MS.gene66836:CDS 35.0%
TTACGAATTTCGGTGATGAT+TGG - chr3.4:99048001-99048020 MS.gene66836:CDS 35.0%
! GGACAAGCTTATCAATTTTG+AGG - chr3.4:99049160-99049179 MS.gene66836:CDS 35.0%
! GTGAATGTGATTTTCCTGTT+AGG + chr3.4:99047240-99047259 None:intergenic 35.0%
! TTTTACATGATTGCCTTCTC+CGG + chr3.4:99049294-99049313 None:intergenic 35.0%
!!! CGTTTTTTAGAGCTTCCTTT+TGG - chr3.4:99048075-99048094 MS.gene66836:CDS 35.0%
!!! TGGCGGAATACAAAGTTTTT+TGG + chr3.4:99047636-99047655 None:intergenic 35.0%
AACTAAACTGACCTTCTCAC+AGG + chr3.4:99047508-99047527 None:intergenic 40.0%
ATAATATGACGTTGTGTGCG+AGG - chr3.4:99047857-99047876 MS.gene66836:intron 40.0%
ATGTATTCCTCGGAAATGAC+CGG + chr3.4:99048699-99048718 None:intergenic 40.0%
ATTTCGGTGATGATTGGAAG+AGG - chr3.4:99048007-99048026 MS.gene66836:CDS 40.0%
CGTGGAAAAAGCAATTTCTG+AGG - chr3.4:99049014-99049033 MS.gene66836:CDS 40.0%
CTGCAAAAATCTCTGTGTCA+TGG - chr3.4:99047473-99047492 MS.gene66836:intron 40.0%
GAAGCTAAGAGAATCTGTAG+TGG - chr3.4:99047450-99047469 MS.gene66836:intron 40.0%
GAAGTGTACACGATGAACAT+TGG + chr3.4:99048833-99048852 None:intergenic 40.0%
GATTCACATTCAGCATCAAC+GGG + chr3.4:99048174-99048193 None:intergenic 40.0%
GCTCAGTAAACCTCTCAAAT+GGG - chr3.4:99047359-99047378 MS.gene66836:intron 40.0%
GGATTCACATTCAGCATCAA+CGG + chr3.4:99048175-99048194 None:intergenic 40.0%
GGTGAGAATGACATATAACC+TGG - chr3.4:99048727-99048746 MS.gene66836:intron 40.0%
TGAGGATTTAGACGTGCTAA+TGG - chr3.4:99049178-99049197 MS.gene66836:CDS 40.0%
TGCAGAAACTGATCACCAAA+AGG + chr3.4:99048093-99048112 None:intergenic 40.0%
TGGAAGATTCGGGAATGTTA+CGG + chr3.4:99047158-99047177 None:intergenic 40.0%
TGTATGACATGGCAGATTGA+TGG - chr3.4:99047682-99047701 MS.gene66836:intron 40.0%
TTAATGACTGTGCTCTGACA+CGG - chr3.4:99048472-99048491 MS.gene66836:intron 40.0%
TTAATTACCGGTCATTTCCG+AGG - chr3.4:99048689-99048708 MS.gene66836:intron 40.0%
TTGCACGCAATAAAGATCCT+TGG + chr3.4:99048966-99048985 None:intergenic 40.0%
TTTATCCGACGCAACAGTTT+CGG + chr3.4:99048196-99048215 None:intergenic 40.0%
TTTCGGTGATGATTGGAAGA+GGG - chr3.4:99048008-99048027 MS.gene66836:CDS 40.0%
TTTGTAAACCCTAGGGTTCT+TGG + chr3.4:99047178-99047197 None:intergenic 40.0%
TTTGTCATTCAACAAGGGAC+TGG + chr3.4:99048518-99048537 None:intergenic 40.0%
! ATCTGAAGCATTACCACCAT+TGG + chr3.4:99048938-99048957 None:intergenic 40.0%
! GCAGATTGATGGTTTCTTAG+CGG - chr3.4:99047693-99047712 MS.gene66836:intron 40.0%
! GCTAGGGACTAGTATTAAGT+TGG + chr3.4:99047091-99047110 None:intergenic 40.0%
! TTGCTCATCAAGTTGTTGGT+AGG - chr3.4:99048031-99048050 MS.gene66836:CDS 40.0%
!! TTCTGAGGTTACAGAAGTTC+AGG - chr3.4:99049029-99049048 MS.gene66836:CDS 40.0%
!!! AGGTTTTGGGTTCTGGTAAT+GGG + chr3.4:99047059-99047078 None:intergenic 40.0%
AAAACATCTGCACCAACGAC+CGG - chr3.4:99049272-99049291 MS.gene66836:CDS 45.0%
AATGTGTCTCACACCTCTTG+CGG - chr3.4:99048227-99048246 MS.gene66836:CDS 45.0%
ACGAGCAACACATTCCTTGT+CGG + chr3.4:99048058-99048077 None:intergenic 45.0%
ACGGATTTCGCATTCGTGAA+TGG + chr3.4:99047139-99047158 None:intergenic 45.0%
AGAACCATCTTGAGTGGCTA+GGG + chr3.4:99047107-99047126 None:intergenic 45.0%
CAAGAGAGTGGAGATAAGTG+AGG - chr3.4:99047927-99047946 MS.gene66836:intron 45.0%
CCACTCAAGATGGTTCTCAT+GGG - chr3.4:99047110-99047129 MS.gene66836:intron 45.0%
CCTAGGGTTCTTGGAAGATT+CGG + chr3.4:99047169-99047188 None:intergenic 45.0%
CCTTGCTGCAATGTATTCCT+CGG + chr3.4:99048709-99048728 None:intergenic 45.0%
CGAATCTTCCAAGAACCCTA+GGG - chr3.4:99047167-99047186 MS.gene66836:intron 45.0%
CGCTCAGTAAACCTCTCAAA+TGG - chr3.4:99047358-99047377 MS.gene66836:intron 45.0%
CTAGGGTTCTTGGAAGATTC+GGG + chr3.4:99047168-99047187 None:intergenic 45.0%
CTGTTGCGTCGGATAAATCT+AGG - chr3.4:99048199-99048218 MS.gene66836:CDS 45.0%
CTTTCCTTTCTGCTTTGGCA+GGG - chr3.4:99048596-99048615 MS.gene66836:intron 45.0%
GAAAGAACCTGAGCCATGAT+AGG + chr3.4:99048264-99048283 None:intergenic 45.0%
GACAGCGATTCCAGAACAAT+TGG + chr3.4:99048424-99048443 None:intergenic 45.0%
GATGTTCGCAAAACCCTAGT+CGG - chr3.4:99047261-99047280 MS.gene66836:CDS 45.0%
GGATGCTAGCAATCCTATCA+TGG - chr3.4:99048248-99048267 MS.gene66836:CDS 45.0%
GGTTTACTGAGCGAAGAAGA+AGG + chr3.4:99047351-99047370 None:intergenic 45.0%
TAGCAATCCTATCATGGCTC+AGG - chr3.4:99048254-99048273 MS.gene66836:CDS 45.0%
TCAGAACCATCATCAATGCG+AGG + chr3.4:99048138-99048157 None:intergenic 45.0%
TCATGGCTCAGGTTCTTTCT+TGG - chr3.4:99048265-99048284 MS.gene66836:CDS 45.0%
TGAATCCGAAACTGTTGCGT+CGG - chr3.4:99048188-99048207 MS.gene66836:CDS 45.0%
TGAGAAGGAAGAATCAGACG+TGG - chr3.4:99048996-99049015 MS.gene66836:CDS 45.0%
! AGGGTTGCTCATCAAGTTGT+TGG - chr3.4:99048027-99048046 MS.gene66836:CDS 45.0%
! GACTAGGGTTTTGCGAACAT+CGG + chr3.4:99047262-99047281 None:intergenic 45.0%
!! TATTAAGTTGGCGTCGCTAG+AGG + chr3.4:99047079-99047098 None:intergenic 45.0%
!! TGTGCGAGGTGTTTTATTCG+TGG - chr3.4:99047871-99047890 MS.gene66836:intron 45.0%
!!! GAGGTTTTGGGTTCTGGTAA+TGG + chr3.4:99047060-99047079 None:intergenic 45.0%
AAAACCCTAGTCGGTGACGT+TGG - chr3.4:99047270-99047289 MS.gene66836:CDS 50.0%
ATCAATGCGAGGAGCAGACT+CGG + chr3.4:99048127-99048146 None:intergenic 50.0%
ATTCGATGATGCGTCGGGTT+TGG + chr3.4:99047397-99047416 None:intergenic 50.0%
CCCATGAGAACCATCTTGAG+TGG + chr3.4:99047113-99047132 None:intergenic 50.0%
CCGAATCTTCCAAGAACCCT+AGG - chr3.4:99047166-99047185 MS.gene66836:intron 50.0%
CCGAGGAATACATTGCAGCA+AGG - chr3.4:99048706-99048725 MS.gene66836:intron 50.0%
GAGAACCATCTTGAGTGGCT+AGG + chr3.4:99047108-99047127 None:intergenic 50.0%
GATGCTGCTGTTGCATCCAA+TGG - chr3.4:99048919-99048938 MS.gene66836:CDS 50.0%
GCCACTCAAGATGGTTCTCA+TGG - chr3.4:99047109-99047128 MS.gene66836:intron 50.0%
GCTTTCCTTTCTGCTTTGGC+AGG - chr3.4:99048595-99048614 MS.gene66836:intron 50.0%
GGAAAAAGAACGCCAGCAGT+TGG - chr3.4:99049199-99049218 MS.gene66836:CDS 50.0%
TAGTCCCTAGCCACTCAAGA+TGG - chr3.4:99047100-99047119 MS.gene66836:intron 50.0%
TCACATTCAGCATCAACGGG+AGG + chr3.4:99048171-99048190 None:intergenic 50.0%
TCTTCGTTTGCTCCAACTGC+TGG + chr3.4:99049214-99049233 None:intergenic 50.0%
TGCGGAATTCGATGATGCGT+CGG + chr3.4:99047403-99047422 None:intergenic 50.0%
TTAGCTTCTTTGACAGGCGC+CGG + chr3.4:99047438-99047457 None:intergenic 50.0%
TTCCGCAGAATCTCCTTCTC+CGG - chr3.4:99047416-99047435 MS.gene66836:intron 50.0%
! AGTTGTTGGTAGGACCGACA+AGG - chr3.4:99048041-99048060 MS.gene66836:CDS 50.0%
! GGCTGCTTTCCTTTCTGCTT+TGG - chr3.4:99048591-99048610 MS.gene66836:intron 50.0%
! TCTGCTCCTCGCATTGATGA+TGG - chr3.4:99048129-99048148 MS.gene66836:CDS 50.0%
! TTGGCGTCGCTAGAGGTTTT+GGG + chr3.4:99047072-99047091 None:intergenic 50.0%
!! GGTTCTGGTAATGGGACTTC+AGG + chr3.4:99047051-99047070 None:intergenic 50.0%
!!! TCGCTAGAGGTTTTGGGTTC+TGG + chr3.4:99047066-99047085 None:intergenic 50.0%
CCTTTCTGCTTTGGCAGGGA+CGG - chr3.4:99048600-99048619 MS.gene66836:intron 55.0%
GCGGAATTCGATGATGCGTC+GGG + chr3.4:99047402-99047421 None:intergenic 55.0%
GCTGCTGTTGCATCCAATGG+TGG - chr3.4:99048922-99048941 MS.gene66836:CDS 55.0%
GGAGTAGTAGTCGGAGGTTG+AGG + chr3.4:99046988-99047007 None:intergenic 55.0%
GGATTGCTAGCATCCGCAAG+AGG + chr3.4:99048243-99048262 None:intergenic 55.0%
TGATTGCCTTCTCCGGTCGT+TGG + chr3.4:99049287-99049306 None:intergenic 55.0%
! AGGCACGACGGTTCTGATTG+GGG + chr3.4:99046944-99046963 None:intergenic 55.0%
! AGTCGGAGGTTGAGGTGTTC+CGG + chr3.4:99046980-99046999 None:intergenic 55.0%
! CGAACCAACGTCACCGACTA+GGG + chr3.4:99047277-99047296 None:intergenic 55.0%
! GACGGTTCTGATTGGGGTTG+AGG + chr3.4:99046938-99046957 None:intergenic 55.0%
! GAGGCACGACGGTTCTGATT+GGG + chr3.4:99046945-99046964 None:intergenic 55.0%
! GGCTTGCTTTGCCTGTGAGA+AGG - chr3.4:99047494-99047513 MS.gene66836:intron 55.0%
! GTTGGCGTCGCTAGAGGTTT+TGG + chr3.4:99047073-99047092 None:intergenic 55.0%
! TCGAACCAACGTCACCGACT+AGG + chr3.4:99047278-99047297 None:intergenic 55.0%
CCGTCCCTGCCAAAGCAGAA+AGG + chr3.4:99048603-99048622 None:intergenic 60.0%
CGCCGGAGAAGGAGATTCTG+CGG + chr3.4:99047421-99047440 None:intergenic 60.0%
GACGGAGGTTGCACAAGCTG+CGG - chr3.4:99048618-99048637 MS.gene66836:intron 60.0%
GAGGGAGGCGGAGTAGTAGT+CGG + chr3.4:99046997-99047016 None:intergenic 60.0%
TCTGCACCAACGACCGGAGA+AGG - chr3.4:99049278-99049297 MS.gene66836:CDS 60.0%
TTCTGCTTTGGCAGGGACGG+AGG - chr3.4:99048603-99048622 MS.gene66836:intron 60.0%
! ACTTCAGGTTTCGCCACCGG+AGG + chr3.4:99047036-99047055 None:intergenic 60.0%
! AGGTTGAGGTGTTCCGGTGG+CGG + chr3.4:99046974-99046993 None:intergenic 60.0%
! GGAGGCACGACGGTTCTGAT+TGG + chr3.4:99046946-99046965 None:intergenic 60.0%
! GGGACTTCAGGTTTCGCCAC+CGG + chr3.4:99047039-99047058 None:intergenic 60.0%
!! TCTTTGACAGGCGCCGGAGA+AGG + chr3.4:99047432-99047451 None:intergenic 60.0%
GGAGGCGGAGTAGTAGTCGG+AGG + chr3.4:99046994-99047013 None:intergenic 65.0%
TCAGGTTTCGCCACCGGAGG+CGG + chr3.4:99047033-99047052 None:intergenic 65.0%
! CGGAGGTTGAGGTGTTCCGG+TGG + chr3.4:99046977-99046996 None:intergenic 65.0%
!! GGTGTTCCGGTGGCGGAAGA+CGG + chr3.4:99046967-99046986 None:intergenic 65.0%
GTGCCTCCGTCTTCCGCCAC+CGG - chr3.4:99046958-99046977 MS.gene66836:CDS 70.0%
! GGCGGAAGACGGAGGCACGA+CGG + chr3.4:99046956-99046975 None:intergenic 70.0%
!! GGTGGTGGGTTCGAGGGAGG+CGG + chr3.4:99047009-99047028 None:intergenic 70.0%
!! GTTCCGGTGGCGGAAGACGG+AGG + chr3.4:99046964-99046983 None:intergenic 70.0%
GAACCCACCACCGCCGCCTC+CGG - chr3.4:99047017-99047036 MS.gene66836:CDS 75.0%
GGTTTCGCCACCGGAGGCGG+CGG + chr3.4:99047030-99047049 None:intergenic 75.0%
!! AGGCGGCGGTGGTGGGTTCG+AGG + chr3.4:99047016-99047035 None:intergenic 75.0%
!! GGCGGCGGTGGTGGGTTCGA+GGG + chr3.4:99047015-99047034 None:intergenic 75.0%
!! GGCGGTGGTGGGTTCGAGGG+AGG + chr3.4:99047012-99047031 None:intergenic 75.0%
! CCACCGGAGGCGGCGGTGGT+GGG + chr3.4:99047023-99047042 None:intergenic 80.0%
! TTCGCCACCGGAGGCGGCGG+TGG + chr3.4:99047027-99047046 None:intergenic 80.0%
! CCCACCACCGCCGCCTCCGG+TGG - chr3.4:99047020-99047039 MS.gene66836:CDS 85.0%
! GCCACCGGAGGCGGCGGTGG+TGG + chr3.4:99047024-99047043 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 99046928 99049322 99046928 ID=MS.gene66836
chr3.4 mRNA 99046928 99049322 99046928 ID=MS.gene66836.t1;Parent=MS.gene66836
chr3.4 exon 99048735 99049322 99048735 ID=MS.gene66836.t1.exon1;Parent=MS.gene66836.t1
chr3.4 CDS 99048735 99049322 99048735 ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1
chr3.4 exon 99047975 99048394 99047975 ID=MS.gene66836.t1.exon2;Parent=MS.gene66836.t1
chr3.4 CDS 99047975 99048394 99047975 ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1
chr3.4 exon 99047523 99047658 99047523 ID=MS.gene66836.t1.exon3;Parent=MS.gene66836.t1
chr3.4 CDS 99047523 99047658 99047523 ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1
chr3.4 exon 99047200 99047330 99047200 ID=MS.gene66836.t1.exon4;Parent=MS.gene66836.t1
chr3.4 CDS 99047200 99047330 99047200 ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1
chr3.4 exon 99046928 99047104 99046928 ID=MS.gene66836.t1.exon5;Parent=MS.gene66836.t1
chr3.4 CDS 99046928 99047104 99046928 ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1
Gene Sequence

>MS.gene66836

ATGGCGACCTCAACCCCAATCAGAACCGTCGTGCCTCCGTCTTCCGCCACCGGAACACCTCAACCTCCGACTACTACTCCGCCTCCCTCGAACCCACCACCGCCGCCTCCGGTGGCGAAACCTGAAGTCCCATTACCAGAACCCAAAACCTCTAGCGACGCCAACTTAATACTAGTCCCTAGCCACTCAAGATGGTTCTCATGGGATTCCATTCACGAATGCGAAATCCGTAACATTCCCGAATCTTCCAAGAACCCTAGGGTTTACAAATACTACAGAAACTCCATCGTCAAGTTTTTCAGATTCAATCCTAACAGGAAAATCACATTCACCGATGTTCGCAAAACCCTAGTCGGTGACGTTGGTTCGATTCGAAGAGTCTTTGATTTTCTTGAAGCTTGGGGTTTAATCAATTATCATCCTTCTTCTTCGCTCAGTAAACCTCTCAAATGGGAAGATAAAGACACCAAACCCGACGCATCATCGAATTCCGCAGAATCTCCTTCTCCGGCGCCTGTCAAAGAAGCTAAGAGAATCTGTAGTGGCTGCAAAAATCTCTGTGTCATGGCTTGCTTTGCCTGTGAGAAGGTCAGTTTAGTTAAAGATTTTTTACACTTTCAATCAATTGTGATTCTCGTATTTTTTTAAGAGAAAACAGAAGATGCATTGATGATGTAAAATAGTAAAATAATTTTACACTGACATCCAAAAAACTTTGTATTCCGCCAAATCATGAAAATATTTTAAAATTAGTTGTATGACATGGCAGATTGATGGTTTCTTAGCGGATGACAGTGTAAAACTCAATTTATCACCATTAAATACATATATGATTGGCTGTGATTTTTTTGACTGTGTAAAACTTTTATGCTGAGAGTGTATTGAAATTAAACTAATTCCATAATTTGAAATGTGAATTTCGGTGCAGAATAATATGACGTTGTGTGCGAGGTGTTTTATTCGTGGAAATTATCGAATTGGTATGAGTAATACAGAATTCAAGAGAGTGGAGATAAGTGAGGAGACAAAAAATGAATGGACTGAGAAGGAAACACTGAATCTTCTTGAAGCTATTACGAATTTCGGTGATGATTGGAAGAGGGTTGCTCATCAAGTTGTTGGTAGGACCGACAAGGAATGTGTTGCTCGTTTTTTAGAGCTTCCTTTTGGTGATCAGTTTCTGCATTATCAACACTCCGAGTCTGCTCCTCGCATTGATGATGGTTCTGATCAGTTGAAGCCTCCCGTTGATGCTGAATGTGAATCCGAAACTGTTGCGTCGGATAAATCTAGGAAGAGAATGTGTCTCACACCTCTTGCGGATGCTAGCAATCCTATCATGGCTCAGGTTCTTTCTTGGCTTAAAATTATCCTTGTTTTCTTTGAATTGTTTATTGTTATTGATTACATTTGTGTGTTATAATGTTTGGGGAAAAAATGAAACTTCATTTGATTACGTGTAGCATTAAAGGAACATGATACCGAATCAAATTCCAATTGTTCTGGAATCGCTGTCTTAATTCTTAGTAGTTGGTTGTTATTTGTTAATGACTGTGCTCTGACACGGTCTTTTGAAATTGATTGTAGCCAGTCCCTTGTTGAATGACAAATGATTTCTTTCAAGTTCTTGTGTCTTAAAAATTTATTTGTTCAAATTATTGCAGGCTGCTTTCCTTTCTGCTTTGGCAGGGACGGAGGTTGCACAAGCTGCGGCTCAAGCTGCTCTGACAAGTTTGTCCAATGTTTACAAATCAACTAGAATTAATTACCGGTCATTTCCGAGGAATACATTGCAGCAAGGTGAGAATGACATATAACCTGGGCTAAGATTATAGGATTTGAATGAATTTAAGCTGTCAATCTGTCATATATCTTAATAGGGTTTATCTCGAAATGGATGAACCAATGTTCATCGTGTACACTTCATTAGTTTGAATGGTTCCGGAAATCTTTAAACTCGGATTTTCTCATTAGAAATGGCGTTTCATGCAGATGCTGCTGTTGCATCCAATGGTGGTAATGCTTCAGATTCTATCCAAGGATCTTTATTGCGTGCAAATTTACAGCTTGAGAAGGAAGAATCAGACGTGGAAAAAGCAATTTCTGAGGTTACAGAAGTTCAGGTCTGTCATGTGTTAGCGATTTAGTGTTTTATTTGATGGTGTTTGTACTTATTAGTTTAATAATCTTTGCTGAATATTGGATGTTGGCTCTATAGATGAAAAATATCCAGGACAAGCTTATCAATTTTGAGGATTTAGACGTGCTAATGGAAAAAGAACGCCAGCAGTTGGAGCAAACGAAGAGTTTGTTTTTCCTTGATCAGCTCAATCTTTTATTTCGTAAAACATCTGCACCAACGACCGGAGAAGGCAATCATGTAAAAAGGAATTGA

Protein sequence

>MS.gene66836.t1

MATSTPIRTVVPPSSATGTPQPPTTTPPPSNPPPPPPVAKPEVPLPEPKTSSDANLILVPSHSRWFSWDSIHECEIRNIPESSKNPRVYKYYRNSIVKFFRFNPNRKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYHPSSSLSKPLKWEDKDTKPDASSNSAESPSPAPVKEAKRICSGCKNLCVMACFACEKNNMTLCARCFIRGNYRIGMSNTEFKRVEISEETKNEWTEKETLNLLEAITNFGDDWKRVAHQVVGRTDKECVARFLELPFGDQFLHYQHSESAPRIDDGSDQLKPPVDAECESETVASDKSRKRMCLTPLADASNPIMAQAAFLSALAGTEVAQAAAQAALTSLSNVYKSTRINYRSFPRNTLQQDAAVASNGGNASDSIQGSLLRANLQLEKEESDVEKAISEVTEVQMKNIQDKLINFEDLDVLMEKERQQLEQTKSLFFLDQLNLLFRKTSAPTTGEGNHVKRN