Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66836.t1 | XP_003603876.1 | 94.4 | 483 | 27 | 0 | 1 | 483 | 1 | 483 | 1.00E-240 | 842.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66836.t1 | Q84JG2 | 51.9 | 437 | 188 | 8 | 48 | 474 | 39 | 463 | 3.2e-113 | 410.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66836.t1 | G7J6G8 | 94.4 | 483 | 27 | 0 | 1 | 483 | 1 | 483 | 7.4e-241 | 842.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66836.t1 | MTR_3g116120 | 97.723 | 483 | 11 | 0 | 1 | 483 | 1 | 483 | 0.0 | 971 |
| MS.gene66836.t1 | MTR_5g085170 | 81.366 | 483 | 40 | 3 | 1 | 483 | 1 | 433 | 0.0 | 760 |
| MS.gene66836.t1 | MTR_6g053260 | 53.015 | 481 | 78 | 13 | 1 | 480 | 1 | 334 | 8.84e-127 | 385 |
| MS.gene66836.t1 | MTR_3g099000 | 27.392 | 533 | 263 | 12 | 47 | 469 | 6 | 524 | 8.45e-54 | 189 |
| MS.gene66836.t1 | MTR_3g088480 | 25.581 | 516 | 281 | 18 | 56 | 474 | 170 | 679 | 4.42e-34 | 136 |
| MS.gene66836.t1 | MTR_4g069830 | 29.286 | 280 | 149 | 6 | 51 | 281 | 133 | 412 | 4.45e-28 | 119 |
| MS.gene66836.t1 | MTR_4g069830 | 29.286 | 280 | 149 | 6 | 51 | 281 | 133 | 412 | 4.87e-28 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66836.t1 | AT2G33610 | 51.945 | 437 | 188 | 8 | 48 | 474 | 39 | 463 | 4.68e-146 | 426 |
| MS.gene66836.t1 | AT2G47620 | 28.340 | 494 | 269 | 12 | 51 | 465 | 7 | 494 | 1.31e-38 | 147 |
| MS.gene66836.t1 | AT1G21700 | 24.038 | 520 | 299 | 17 | 35 | 472 | 158 | 663 | 3.67e-37 | 145 |
| MS.gene66836.t1 | AT2G47620 | 30.226 | 354 | 185 | 9 | 51 | 348 | 7 | 354 | 1.91e-34 | 134 |
| MS.gene66836.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 2.28e-25 | 110 |
| MS.gene66836.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 2.43e-25 | 110 |
| MS.gene66836.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 2.52e-25 | 110 |
| MS.gene66836.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 2.52e-25 | 110 |
Find 121 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGCGTCGCTAGAGGTTT+TGG | 0.216425 | 3.4:+99049158 | None:intergenic |
| CTTGAAGCTATTACGAATTT+CGG | 0.268562 | 3.4:-99048237 | MS.gene66836:CDS |
| GGCTGCTTTCCTTTCTGCTT+TGG | 0.304195 | 3.4:-99047637 | MS.gene66836:CDS |
| GGTTCTGGTAATGGGACTTC+AGG | 0.304961 | 3.4:+99049180 | None:intergenic |
| TTCTGAGGTTACAGAAGTTC+AGG | 0.308719 | 3.4:-99047199 | MS.gene66836:intron |
| GCCACCGGAGGCGGCGGTGG+TGG | 0.310149 | 3.4:+99049207 | None:intergenic |
| TTTGTAAACCCTAGGGTTCT+TGG | 0.330782 | 3.4:+99049053 | None:intergenic |
| AGGCGGCGGTGGTGGGTTCG+AGG | 0.332048 | 3.4:+99049215 | None:intergenic |
| GCTTTCCTTTCTGCTTTGGC+AGG | 0.337459 | 3.4:-99047633 | MS.gene66836:CDS |
| GAGAAGGCAATCATGTAAAA+AGG | 0.339330 | 3.4:-99046934 | MS.gene66836:CDS |
| TTTATCCGACGCAACAGTTT+CGG | 0.342652 | 3.4:+99048035 | None:intergenic |
| ATTCGTGGAAATTATCGAAT+TGG | 0.350506 | 3.4:-99048342 | MS.gene66836:CDS |
| GAGGCACGACGGTTCTGATT+GGG | 0.357171 | 3.4:+99049286 | None:intergenic |
| CCTAGGGTTCTTGGAAGATT+CGG | 0.357797 | 3.4:+99049062 | None:intergenic |
| CGCTCAGTAAACCTCTCAAA+TGG | 0.370402 | 3.4:-99048870 | MS.gene66836:CDS |
| CTAGGGTTCTTGGAAGATTC+GGG | 0.380857 | 3.4:+99049063 | None:intergenic |
| ATTCGATGATGCGTCGGGTT+TGG | 0.397005 | 3.4:+99048834 | None:intergenic |
| TTCGCCACCGGAGGCGGCGG+TGG | 0.405270 | 3.4:+99049204 | None:intergenic |
| AGTCGGAGGTTGAGGTGTTC+CGG | 0.412366 | 3.4:+99049251 | None:intergenic |
| TGAGGATTTAGACGTGCTAA+TGG | 0.416011 | 3.4:-99047050 | MS.gene66836:CDS |
| TTACGAATTTCGGTGATGAT+TGG | 0.419721 | 3.4:-99048227 | MS.gene66836:CDS |
| CCTTTCTGCTTTGGCAGGGA+CGG | 0.421374 | 3.4:-99047628 | MS.gene66836:CDS |
| GACGGTTCTGATTGGGGTTG+AGG | 0.426682 | 3.4:+99049293 | None:intergenic |
| TCTTCGTTTGCTCCAACTGC+TGG | 0.436192 | 3.4:+99047017 | None:intergenic |
| CCACCGGAGGCGGCGGTGGT+GGG | 0.442186 | 3.4:+99049208 | None:intergenic |
| GAAAGAACCTGAGCCATGAT+AGG | 0.443755 | 3.4:+99047967 | None:intergenic |
| TCAGGTTTCGCCACCGGAGG+CGG | 0.443862 | 3.4:+99049198 | None:intergenic |
| ACGGATTTCGCATTCGTGAA+TGG | 0.445293 | 3.4:+99049092 | None:intergenic |
| GGTGGTGGGTTCGAGGGAGG+CGG | 0.448251 | 3.4:+99049222 | None:intergenic |
| GGAGGCACGACGGTTCTGAT+TGG | 0.459252 | 3.4:+99049285 | None:intergenic |
| TGGAAGATTCGGGAATGTTA+CGG | 0.464080 | 3.4:+99049073 | None:intergenic |
| CTGTTGCGTCGGATAAATCT+AGG | 0.464854 | 3.4:-99048029 | MS.gene66836:CDS |
| TTGCACGCAATAAAGATCCT+TGG | 0.465240 | 3.4:+99047265 | None:intergenic |
| AGGGTTGCTCATCAAGTTGT+TGG | 0.467288 | 3.4:-99048201 | MS.gene66836:CDS |
| GAACCCACCACCGCCGCCTC+CGG | 0.468860 | 3.4:-99049211 | MS.gene66836:CDS |
| GTGCCTCCGTCTTCCGCCAC+CGG | 0.470261 | 3.4:-99049270 | MS.gene66836:CDS |
| ATCTGAAGCATTACCACCAT+TGG | 0.471038 | 3.4:+99047293 | None:intergenic |
| GATTCACATTCAGCATCAAC+GGG | 0.474269 | 3.4:+99048057 | None:intergenic |
| AATCAACTAGAATTAATTAC+CGG | 0.474504 | 3.4:-99047551 | MS.gene66836:CDS |
| GCGGAATTCGATGATGCGTC+GGG | 0.478699 | 3.4:+99048829 | None:intergenic |
| TCTAGTTGATTTGTAAACAT+TGG | 0.479041 | 3.4:+99047563 | None:intergenic |
| CGAACCAACGTCACCGACTA+GGG | 0.480955 | 3.4:+99048954 | None:intergenic |
| GGCGGTGGTGGGTTCGAGGG+AGG | 0.482062 | 3.4:+99049219 | None:intergenic |
| ATTCTCTTAGCTTCTTTGAC+AGG | 0.485476 | 3.4:+99048787 | None:intergenic |
| CAAAATTGATAAGCTTGTCC+TGG | 0.486513 | 3.4:+99047071 | None:intergenic |
| CTGTAGTATTTGTAAACCCT+AGG | 0.490342 | 3.4:+99049045 | None:intergenic |
| TCGAACCAACGTCACCGACT+AGG | 0.492371 | 3.4:+99048953 | None:intergenic |
| TCTGCTCCTCGCATTGATGA+TGG | 0.492996 | 3.4:-99048099 | MS.gene66836:CDS |
| CCGAATCTTCCAAGAACCCT+AGG | 0.500165 | 3.4:-99049062 | MS.gene66836:CDS |
| GCCACTCAAGATGGTTCTCA+TGG | 0.500382 | 3.4:-99049119 | MS.gene66836:CDS |
| GGTGTTCCGGTGGCGGAAGA+CGG | 0.500983 | 3.4:+99049264 | None:intergenic |
| AGGTTGAGGTGTTCCGGTGG+CGG | 0.501069 | 3.4:+99049257 | None:intergenic |
| TGCGGAATTCGATGATGCGT+CGG | 0.502829 | 3.4:+99048828 | None:intergenic |
| GGGACTTCAGGTTTCGCCAC+CGG | 0.504355 | 3.4:+99049192 | None:intergenic |
| GGTTTCGCCACCGGAGGCGG+CGG | 0.509368 | 3.4:+99049201 | None:intergenic |
| TCTTTGACAGGCGCCGGAGA+AGG | 0.514796 | 3.4:+99048799 | None:intergenic |
| CTTTCCTTTCTGCTTTGGCA+GGG | 0.515547 | 3.4:-99047632 | MS.gene66836:CDS |
| TGATTGCCTTCTCCGGTCGT+TGG | 0.518632 | 3.4:+99046944 | None:intergenic |
| GATGCTGCTGTTGCATCCAA+TGG | 0.519252 | 3.4:-99047309 | MS.gene66836:CDS |
| GGCTTGCTTTGCCTGTGAGA+AGG | 0.520661 | 3.4:-99048734 | MS.gene66836:intron |
| ATAAAAGATTGAGCTGATCA+AGG | 0.521081 | 3.4:+99046984 | None:intergenic |
| ACGAGCAACACATTCCTTGT+CGG | 0.522938 | 3.4:+99048173 | None:intergenic |
| GGAGTAGTAGTCGGAGGTTG+AGG | 0.527129 | 3.4:+99049243 | None:intergenic |
| ATCAATGCGAGGAGCAGACT+CGG | 0.528293 | 3.4:+99048104 | None:intergenic |
| GGATGCTAGCAATCCTATCA+TGG | 0.529881 | 3.4:-99047980 | MS.gene66836:CDS |
| TGCAGAAACTGATCACCAAA+AGG | 0.531795 | 3.4:+99048138 | None:intergenic |
| AGAACCATCTTGAGTGGCTA+GGG | 0.532947 | 3.4:+99049124 | None:intergenic |
| TAGCAATCCTATCATGGCTC+AGG | 0.533854 | 3.4:-99047974 | MS.gene66836:intron |
| TCTTTATCTTCCCATTTGAG+AGG | 0.534057 | 3.4:+99048859 | None:intergenic |
| TGTAGTATTTGTAAACCCTA+GGG | 0.534357 | 3.4:+99049046 | None:intergenic |
| AAAACATCTGCACCAACGAC+CGG | 0.535739 | 3.4:-99046956 | MS.gene66836:CDS |
| TCTGCACCAACGACCGGAGA+AGG | 0.536832 | 3.4:-99046950 | MS.gene66836:CDS |
| GGATTCACATTCAGCATCAA+CGG | 0.539105 | 3.4:+99048056 | None:intergenic |
| GCTCAGTAAACCTCTCAAAT+GGG | 0.539806 | 3.4:-99048869 | MS.gene66836:CDS |
| CCCACCACCGCCGCCTCCGG+TGG | 0.540370 | 3.4:-99049208 | MS.gene66836:CDS |
| TTAGCTTCTTTGACAGGCGC+CGG | 0.542076 | 3.4:+99048793 | None:intergenic |
| ATTTCGGTGATGATTGGAAG+AGG | 0.544103 | 3.4:-99048221 | MS.gene66836:CDS |
| AACTAAACTGACCTTCTCAC+AGG | 0.545557 | 3.4:+99048723 | None:intergenic |
| GCTAGGGACTAGTATTAAGT+TGG | 0.546014 | 3.4:+99049140 | None:intergenic |
| GGTTTACTGAGCGAAGAAGA+AGG | 0.548651 | 3.4:+99048880 | None:intergenic |
| TTCTGCTTTGGCAGGGACGG+AGG | 0.550159 | 3.4:-99047625 | MS.gene66836:CDS |
| TGCAAATTTACAGCTTGAGA+AGG | 0.556628 | 3.4:-99047247 | MS.gene66836:CDS |
| TTCCGCAGAATCTCCTTCTC+CGG | 0.556844 | 3.4:-99048812 | MS.gene66836:CDS |
| CGAATCTTCCAAGAACCCTA+GGG | 0.558609 | 3.4:-99049061 | MS.gene66836:CDS |
| CCTTGCTGCAATGTATTCCT+CGG | 0.560596 | 3.4:+99047522 | None:intergenic |
| ATGTATTCCTCGGAAATGAC+CGG | 0.561368 | 3.4:+99047532 | None:intergenic |
| TTGCTCATCAAGTTGTTGGT+AGG | 0.563248 | 3.4:-99048197 | MS.gene66836:CDS |
| CCGTCCCTGCCAAAGCAGAA+AGG | 0.564962 | 3.4:+99047628 | None:intergenic |
| GGCGGCGGTGGTGGGTTCGA+GGG | 0.565038 | 3.4:+99049216 | None:intergenic |
| TATTAAGTTGGCGTCGCTAG+AGG | 0.569207 | 3.4:+99049152 | None:intergenic |
| TAATACAGAATTCAAGAGAG+TGG | 0.570887 | 3.4:-99048313 | MS.gene66836:CDS |
| AGGCACGACGGTTCTGATTG+GGG | 0.575751 | 3.4:+99049287 | None:intergenic |
| GAGAACCATCTTGAGTGGCT+AGG | 0.580360 | 3.4:+99049123 | None:intergenic |
| GACGGAGGTTGCACAAGCTG+CGG | 0.582049 | 3.4:-99047610 | MS.gene66836:CDS |
| AATGCTTCAGATTCTATCCA+AGG | 0.586687 | 3.4:-99047282 | MS.gene66836:CDS |
| CAAGAGAGTGGAGATAAGTG+AGG | 0.590112 | 3.4:-99048301 | MS.gene66836:CDS |
| ACTTCAGGTTTCGCCACCGG+AGG | 0.593361 | 3.4:+99049195 | None:intergenic |
| TAGTCCCTAGCCACTCAAGA+TGG | 0.598302 | 3.4:-99049128 | MS.gene66836:CDS |
| TTAATTACCGGTCATTTCCG+AGG | 0.609744 | 3.4:-99047539 | MS.gene66836:CDS |
| TTTCGGTGATGATTGGAAGA+GGG | 0.613337 | 3.4:-99048220 | MS.gene66836:CDS |
| AATGTGTCTCACACCTCTTG+CGG | 0.617103 | 3.4:-99048001 | MS.gene66836:CDS |
| GAGGGAGGCGGAGTAGTAGT+CGG | 0.620100 | 3.4:+99049234 | None:intergenic |
| GGATTGCTAGCATCCGCAAG+AGG | 0.621759 | 3.4:+99047988 | None:intergenic |
| CCACTCAAGATGGTTCTCAT+GGG | 0.624877 | 3.4:-99049118 | MS.gene66836:CDS |
| CGCCGGAGAAGGAGATTCTG+CGG | 0.634496 | 3.4:+99048810 | None:intergenic |
| CCGAGGAATACATTGCAGCA+AGG | 0.638324 | 3.4:-99047522 | MS.gene66836:intron |
| TGAATCCGAAACTGTTGCGT+CGG | 0.639096 | 3.4:-99048040 | MS.gene66836:CDS |
| CGGAGGTTGAGGTGTTCCGG+TGG | 0.643233 | 3.4:+99049254 | None:intergenic |
| CCCATGAGAACCATCTTGAG+TGG | 0.645166 | 3.4:+99049118 | None:intergenic |
| GTTCCGGTGGCGGAAGACGG+AGG | 0.648161 | 3.4:+99049267 | None:intergenic |
| GAAGCTAAGAGAATCTGTAG+TGG | 0.654963 | 3.4:-99048778 | MS.gene66836:CDS |
| AGTTGTTGGTAGGACCGACA+AGG | 0.658858 | 3.4:-99048187 | MS.gene66836:CDS |
| TCACATTCAGCATCAACGGG+AGG | 0.659217 | 3.4:+99048060 | None:intergenic |
| GGAGGCGGAGTAGTAGTCGG+AGG | 0.661488 | 3.4:+99049237 | None:intergenic |
| GATGTTCGCAAAACCCTAGT+CGG | 0.661918 | 3.4:-99048967 | MS.gene66836:CDS |
| ATAATATGACGTTGTGTGCG+AGG | 0.667737 | 3.4:-99048371 | MS.gene66836:CDS |
| TGAGAAGGAAGAATCAGACG+TGG | 0.680762 | 3.4:-99047232 | MS.gene66836:CDS |
| AAAACCCTAGTCGGTGACGT+TGG | 0.681388 | 3.4:-99048958 | MS.gene66836:CDS |
| GGCGGAAGACGGAGGCACGA+CGG | 0.688333 | 3.4:+99049275 | None:intergenic |
| GCTGCTGTTGCATCCAATGG+TGG | 0.695124 | 3.4:-99047306 | MS.gene66836:CDS |
| TCAGAACCATCATCAATGCG+AGG | 0.698974 | 3.4:+99048093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATATTTTCATGATT+TGG | + | chr3.4:99047656-99047675 | None:intergenic | 10.0% |
| !!! | ATAATTTGAAATGTGAATTT+CGG | - | chr3.4:99047828-99047847 | MS.gene66836:intron | 15.0% |
| !! | AATCAACTAGAATTAATTAC+CGG | - | chr3.4:99048677-99048696 | MS.gene66836:intron | 20.0% |
| !! | AATCTGTCATATATCTTAAT+AGG | - | chr3.4:99048786-99048805 | MS.gene66836:CDS | 20.0% |
| !! | ATCTGTCATATATCTTAATA+GGG | - | chr3.4:99048787-99048806 | MS.gene66836:CDS | 20.0% |
| !! | ATTTGTGTGTTATAATGTTT+GGG | - | chr3.4:99048336-99048355 | MS.gene66836:CDS | 20.0% |
| !! | CCAATCATATATGTATTTAA+TGG | + | chr3.4:99047745-99047764 | None:intergenic | 20.0% |
| !! | CCATTAAATACATATATGAT+TGG | - | chr3.4:99047742-99047761 | MS.gene66836:intron | 20.0% |
| !! | GAAATTCACATTTCAAATTA+TGG | + | chr3.4:99047829-99047848 | None:intergenic | 20.0% |
| !! | TAAACAATTCAAAGAAAACA+AGG | + | chr3.4:99048302-99048321 | None:intergenic | 20.0% |
| !! | TAATAATCTTTGCTGAATAT+TGG | - | chr3.4:99049108-99049127 | MS.gene66836:CDS | 20.0% |
| !! | TTAAAATTAGTTGTATGACA+TGG | - | chr3.4:99047671-99047690 | MS.gene66836:intron | 20.0% |
| !! | TTATTTGTTCAAATTATTGC+AGG | - | chr3.4:99048570-99048589 | MS.gene66836:intron | 20.0% |
| !!! | AAAATATTTTCATGATTTGG+CGG | + | chr3.4:99047653-99047672 | None:intergenic | 20.0% |
| ! | AAATCATTTGTCATTCAACA+AGG | + | chr3.4:99048524-99048543 | None:intergenic | 25.0% |
| ! | AATCATTTGTCATTCAACAA+GGG | + | chr3.4:99048523-99048542 | None:intergenic | 25.0% |
| ! | AGAACAATTGGAATTTGATT+CGG | + | chr3.4:99048412-99048431 | None:intergenic | 25.0% |
| ! | CATTTGTGTGTTATAATGTT+TGG | - | chr3.4:99048335-99048354 | MS.gene66836:CDS | 25.0% |
| ! | TCTATAGATGAAAAATATCC+AGG | - | chr3.4:99049139-99049158 | MS.gene66836:CDS | 25.0% |
| ! | TTTGTGTGTTATAATGTTTG+GGG | - | chr3.4:99048337-99048356 | MS.gene66836:CDS | 25.0% |
| !!! | CGATTTAGTGTTTTATTTGA+TGG | - | chr3.4:99049067-99049086 | MS.gene66836:CDS | 25.0% |
| !!! | TCTAGTTGATTTGTAAACAT+TGG | + | chr3.4:99048668-99048687 | None:intergenic | 25.0% |
| AATCCGAGTTTAAAGATTTC+CGG | + | chr3.4:99048872-99048891 | None:intergenic | 30.0% | |
| ATAAAAGATTGAGCTGATCA+AGG | + | chr3.4:99049247-99049266 | None:intergenic | 30.0% | |
| ATTCGTGGAAATTATCGAAT+TGG | - | chr3.4:99047886-99047905 | MS.gene66836:intron | 30.0% | |
| CTGTCTTAATTCTTAGTAGT+TGG | - | chr3.4:99048439-99048458 | MS.gene66836:intron | 30.0% | |
| CTTGAAGCTATTACGAATTT+CGG | - | chr3.4:99047991-99048010 | MS.gene66836:CDS | 30.0% | |
| GAATCAAATTCCAATTGTTC+TGG | - | chr3.4:99048411-99048430 | MS.gene66836:intron | 30.0% | |
| TAATACAGAATTCAAGAGAG+TGG | - | chr3.4:99047915-99047934 | MS.gene66836:intron | 30.0% | |
| TAATAGGGTTTATCTCGAAA+TGG | - | chr3.4:99048802-99048821 | MS.gene66836:CDS | 30.0% | |
| TGTAGTATTTGTAAACCCTA+GGG | + | chr3.4:99047185-99047204 | None:intergenic | 30.0% | |
| TTGATTACGTGTAGCATTAA+AGG | - | chr3.4:99048377-99048396 | MS.gene66836:intron | 30.0% | |
| ! | GTACACTTCATTAGTTTGAA+TGG | - | chr3.4:99048844-99048863 | MS.gene66836:CDS | 30.0% |
| ! | TCGGATTTTCTCATTAGAAA+TGG | - | chr3.4:99048885-99048904 | MS.gene66836:CDS | 30.0% |
| ! | TTCATTAGTTTGAATGGTTC+CGG | - | chr3.4:99048850-99048869 | MS.gene66836:CDS | 30.0% |
| ! | TTTTCAGATTCAATCCTAAC+AGG | - | chr3.4:99047223-99047242 | MS.gene66836:CDS | 30.0% |
| !! | AAAAAATGAATGGACTGAGA+AGG | - | chr3.4:99047954-99047973 | MS.gene66836:intron | 30.0% |
| !! | CTTTGATTTTCTTGAAGCTT+GGG | - | chr3.4:99047308-99047327 | MS.gene66836:CDS | 30.0% |
| !! | TCTTTGATTTTCTTGAAGCT+TGG | - | chr3.4:99047307-99047326 | MS.gene66836:CDS | 30.0% |
| !! | TTTGATTTTCTTGAAGCTTG+GGG | - | chr3.4:99047309-99047328 | MS.gene66836:CDS | 30.0% |
| AAATCCTATAATCTTAGCCC+AGG | + | chr3.4:99048748-99048767 | None:intergenic | 35.0% | |
| AATGCTTCAGATTCTATCCA+AGG | - | chr3.4:99048946-99048965 | MS.gene66836:CDS | 35.0% | |
| ATAACCTGGGCTAAGATTAT+AGG | - | chr3.4:99048741-99048760 | MS.gene66836:CDS | 35.0% | |
| ATTCTCTTAGCTTCTTTGAC+AGG | + | chr3.4:99047444-99047463 | None:intergenic | 35.0% | |
| CAAAATTGATAAGCTTGTCC+TGG | + | chr3.4:99049160-99049179 | None:intergenic | 35.0% | |
| CTGTAGTATTTGTAAACCCT+AGG | + | chr3.4:99047186-99047205 | None:intergenic | 35.0% | |
| CTTTGCTGAATATTGGATGT+TGG | - | chr3.4:99049115-99049134 | MS.gene66836:CDS | 35.0% | |
| GAATCTGAAAAACTTGACGA+TGG | + | chr3.4:99047214-99047233 | None:intergenic | 35.0% | |
| GAGAAGGCAATCATGTAAAA+AGG | - | chr3.4:99049294-99049313 | MS.gene66836:CDS | 35.0% | |
| GTGAGAATGACATATAACCT+GGG | - | chr3.4:99048728-99048747 | MS.gene66836:intron | 35.0% | |
| GTGAGGAGACAAAAAATGAA+TGG | - | chr3.4:99047944-99047963 | MS.gene66836:intron | 35.0% | |
| GTTCCGGAAATCTTTAAACT+CGG | - | chr3.4:99048866-99048885 | MS.gene66836:CDS | 35.0% | |
| TCTTTATCTTCCCATTTGAG+AGG | + | chr3.4:99047372-99047391 | None:intergenic | 35.0% | |
| TGCAAATTTACAGCTTGAGA+AGG | - | chr3.4:99048981-99049000 | MS.gene66836:CDS | 35.0% | |
| TTACGAATTTCGGTGATGAT+TGG | - | chr3.4:99048001-99048020 | MS.gene66836:CDS | 35.0% | |
| ! | GGACAAGCTTATCAATTTTG+AGG | - | chr3.4:99049160-99049179 | MS.gene66836:CDS | 35.0% |
| ! | GTGAATGTGATTTTCCTGTT+AGG | + | chr3.4:99047240-99047259 | None:intergenic | 35.0% |
| ! | TTTTACATGATTGCCTTCTC+CGG | + | chr3.4:99049294-99049313 | None:intergenic | 35.0% |
| !!! | CGTTTTTTAGAGCTTCCTTT+TGG | - | chr3.4:99048075-99048094 | MS.gene66836:CDS | 35.0% |
| !!! | TGGCGGAATACAAAGTTTTT+TGG | + | chr3.4:99047636-99047655 | None:intergenic | 35.0% |
| AACTAAACTGACCTTCTCAC+AGG | + | chr3.4:99047508-99047527 | None:intergenic | 40.0% | |
| ATAATATGACGTTGTGTGCG+AGG | - | chr3.4:99047857-99047876 | MS.gene66836:intron | 40.0% | |
| ATGTATTCCTCGGAAATGAC+CGG | + | chr3.4:99048699-99048718 | None:intergenic | 40.0% | |
| ATTTCGGTGATGATTGGAAG+AGG | - | chr3.4:99048007-99048026 | MS.gene66836:CDS | 40.0% | |
| CGTGGAAAAAGCAATTTCTG+AGG | - | chr3.4:99049014-99049033 | MS.gene66836:CDS | 40.0% | |
| CTGCAAAAATCTCTGTGTCA+TGG | - | chr3.4:99047473-99047492 | MS.gene66836:intron | 40.0% | |
| GAAGCTAAGAGAATCTGTAG+TGG | - | chr3.4:99047450-99047469 | MS.gene66836:intron | 40.0% | |
| GAAGTGTACACGATGAACAT+TGG | + | chr3.4:99048833-99048852 | None:intergenic | 40.0% | |
| GATTCACATTCAGCATCAAC+GGG | + | chr3.4:99048174-99048193 | None:intergenic | 40.0% | |
| GCTCAGTAAACCTCTCAAAT+GGG | - | chr3.4:99047359-99047378 | MS.gene66836:intron | 40.0% | |
| GGATTCACATTCAGCATCAA+CGG | + | chr3.4:99048175-99048194 | None:intergenic | 40.0% | |
| GGTGAGAATGACATATAACC+TGG | - | chr3.4:99048727-99048746 | MS.gene66836:intron | 40.0% | |
| TGAGGATTTAGACGTGCTAA+TGG | - | chr3.4:99049178-99049197 | MS.gene66836:CDS | 40.0% | |
| TGCAGAAACTGATCACCAAA+AGG | + | chr3.4:99048093-99048112 | None:intergenic | 40.0% | |
| TGGAAGATTCGGGAATGTTA+CGG | + | chr3.4:99047158-99047177 | None:intergenic | 40.0% | |
| TGTATGACATGGCAGATTGA+TGG | - | chr3.4:99047682-99047701 | MS.gene66836:intron | 40.0% | |
| TTAATGACTGTGCTCTGACA+CGG | - | chr3.4:99048472-99048491 | MS.gene66836:intron | 40.0% | |
| TTAATTACCGGTCATTTCCG+AGG | - | chr3.4:99048689-99048708 | MS.gene66836:intron | 40.0% | |
| TTGCACGCAATAAAGATCCT+TGG | + | chr3.4:99048966-99048985 | None:intergenic | 40.0% | |
| TTTATCCGACGCAACAGTTT+CGG | + | chr3.4:99048196-99048215 | None:intergenic | 40.0% | |
| TTTCGGTGATGATTGGAAGA+GGG | - | chr3.4:99048008-99048027 | MS.gene66836:CDS | 40.0% | |
| TTTGTAAACCCTAGGGTTCT+TGG | + | chr3.4:99047178-99047197 | None:intergenic | 40.0% | |
| TTTGTCATTCAACAAGGGAC+TGG | + | chr3.4:99048518-99048537 | None:intergenic | 40.0% | |
| ! | ATCTGAAGCATTACCACCAT+TGG | + | chr3.4:99048938-99048957 | None:intergenic | 40.0% |
| ! | GCAGATTGATGGTTTCTTAG+CGG | - | chr3.4:99047693-99047712 | MS.gene66836:intron | 40.0% |
| ! | GCTAGGGACTAGTATTAAGT+TGG | + | chr3.4:99047091-99047110 | None:intergenic | 40.0% |
| ! | TTGCTCATCAAGTTGTTGGT+AGG | - | chr3.4:99048031-99048050 | MS.gene66836:CDS | 40.0% |
| !! | TTCTGAGGTTACAGAAGTTC+AGG | - | chr3.4:99049029-99049048 | MS.gene66836:CDS | 40.0% |
| !!! | AGGTTTTGGGTTCTGGTAAT+GGG | + | chr3.4:99047059-99047078 | None:intergenic | 40.0% |
| AAAACATCTGCACCAACGAC+CGG | - | chr3.4:99049272-99049291 | MS.gene66836:CDS | 45.0% | |
| AATGTGTCTCACACCTCTTG+CGG | - | chr3.4:99048227-99048246 | MS.gene66836:CDS | 45.0% | |
| ACGAGCAACACATTCCTTGT+CGG | + | chr3.4:99048058-99048077 | None:intergenic | 45.0% | |
| ACGGATTTCGCATTCGTGAA+TGG | + | chr3.4:99047139-99047158 | None:intergenic | 45.0% | |
| AGAACCATCTTGAGTGGCTA+GGG | + | chr3.4:99047107-99047126 | None:intergenic | 45.0% | |
| CAAGAGAGTGGAGATAAGTG+AGG | - | chr3.4:99047927-99047946 | MS.gene66836:intron | 45.0% | |
| CCACTCAAGATGGTTCTCAT+GGG | - | chr3.4:99047110-99047129 | MS.gene66836:intron | 45.0% | |
| CCTAGGGTTCTTGGAAGATT+CGG | + | chr3.4:99047169-99047188 | None:intergenic | 45.0% | |
| CCTTGCTGCAATGTATTCCT+CGG | + | chr3.4:99048709-99048728 | None:intergenic | 45.0% | |
| CGAATCTTCCAAGAACCCTA+GGG | - | chr3.4:99047167-99047186 | MS.gene66836:intron | 45.0% | |
| CGCTCAGTAAACCTCTCAAA+TGG | - | chr3.4:99047358-99047377 | MS.gene66836:intron | 45.0% | |
| CTAGGGTTCTTGGAAGATTC+GGG | + | chr3.4:99047168-99047187 | None:intergenic | 45.0% | |
| CTGTTGCGTCGGATAAATCT+AGG | - | chr3.4:99048199-99048218 | MS.gene66836:CDS | 45.0% | |
| CTTTCCTTTCTGCTTTGGCA+GGG | - | chr3.4:99048596-99048615 | MS.gene66836:intron | 45.0% | |
| GAAAGAACCTGAGCCATGAT+AGG | + | chr3.4:99048264-99048283 | None:intergenic | 45.0% | |
| GACAGCGATTCCAGAACAAT+TGG | + | chr3.4:99048424-99048443 | None:intergenic | 45.0% | |
| GATGTTCGCAAAACCCTAGT+CGG | - | chr3.4:99047261-99047280 | MS.gene66836:CDS | 45.0% | |
| GGATGCTAGCAATCCTATCA+TGG | - | chr3.4:99048248-99048267 | MS.gene66836:CDS | 45.0% | |
| GGTTTACTGAGCGAAGAAGA+AGG | + | chr3.4:99047351-99047370 | None:intergenic | 45.0% | |
| TAGCAATCCTATCATGGCTC+AGG | - | chr3.4:99048254-99048273 | MS.gene66836:CDS | 45.0% | |
| TCAGAACCATCATCAATGCG+AGG | + | chr3.4:99048138-99048157 | None:intergenic | 45.0% | |
| TCATGGCTCAGGTTCTTTCT+TGG | - | chr3.4:99048265-99048284 | MS.gene66836:CDS | 45.0% | |
| TGAATCCGAAACTGTTGCGT+CGG | - | chr3.4:99048188-99048207 | MS.gene66836:CDS | 45.0% | |
| TGAGAAGGAAGAATCAGACG+TGG | - | chr3.4:99048996-99049015 | MS.gene66836:CDS | 45.0% | |
| ! | AGGGTTGCTCATCAAGTTGT+TGG | - | chr3.4:99048027-99048046 | MS.gene66836:CDS | 45.0% |
| ! | GACTAGGGTTTTGCGAACAT+CGG | + | chr3.4:99047262-99047281 | None:intergenic | 45.0% |
| !! | TATTAAGTTGGCGTCGCTAG+AGG | + | chr3.4:99047079-99047098 | None:intergenic | 45.0% |
| !! | TGTGCGAGGTGTTTTATTCG+TGG | - | chr3.4:99047871-99047890 | MS.gene66836:intron | 45.0% |
| !!! | GAGGTTTTGGGTTCTGGTAA+TGG | + | chr3.4:99047060-99047079 | None:intergenic | 45.0% |
| AAAACCCTAGTCGGTGACGT+TGG | - | chr3.4:99047270-99047289 | MS.gene66836:CDS | 50.0% | |
| ATCAATGCGAGGAGCAGACT+CGG | + | chr3.4:99048127-99048146 | None:intergenic | 50.0% | |
| ATTCGATGATGCGTCGGGTT+TGG | + | chr3.4:99047397-99047416 | None:intergenic | 50.0% | |
| CCCATGAGAACCATCTTGAG+TGG | + | chr3.4:99047113-99047132 | None:intergenic | 50.0% | |
| CCGAATCTTCCAAGAACCCT+AGG | - | chr3.4:99047166-99047185 | MS.gene66836:intron | 50.0% | |
| CCGAGGAATACATTGCAGCA+AGG | - | chr3.4:99048706-99048725 | MS.gene66836:intron | 50.0% | |
| GAGAACCATCTTGAGTGGCT+AGG | + | chr3.4:99047108-99047127 | None:intergenic | 50.0% | |
| GATGCTGCTGTTGCATCCAA+TGG | - | chr3.4:99048919-99048938 | MS.gene66836:CDS | 50.0% | |
| GCCACTCAAGATGGTTCTCA+TGG | - | chr3.4:99047109-99047128 | MS.gene66836:intron | 50.0% | |
| GCTTTCCTTTCTGCTTTGGC+AGG | - | chr3.4:99048595-99048614 | MS.gene66836:intron | 50.0% | |
| GGAAAAAGAACGCCAGCAGT+TGG | - | chr3.4:99049199-99049218 | MS.gene66836:CDS | 50.0% | |
| TAGTCCCTAGCCACTCAAGA+TGG | - | chr3.4:99047100-99047119 | MS.gene66836:intron | 50.0% | |
| TCACATTCAGCATCAACGGG+AGG | + | chr3.4:99048171-99048190 | None:intergenic | 50.0% | |
| TCTTCGTTTGCTCCAACTGC+TGG | + | chr3.4:99049214-99049233 | None:intergenic | 50.0% | |
| TGCGGAATTCGATGATGCGT+CGG | + | chr3.4:99047403-99047422 | None:intergenic | 50.0% | |
| TTAGCTTCTTTGACAGGCGC+CGG | + | chr3.4:99047438-99047457 | None:intergenic | 50.0% | |
| TTCCGCAGAATCTCCTTCTC+CGG | - | chr3.4:99047416-99047435 | MS.gene66836:intron | 50.0% | |
| ! | AGTTGTTGGTAGGACCGACA+AGG | - | chr3.4:99048041-99048060 | MS.gene66836:CDS | 50.0% |
| ! | GGCTGCTTTCCTTTCTGCTT+TGG | - | chr3.4:99048591-99048610 | MS.gene66836:intron | 50.0% |
| ! | TCTGCTCCTCGCATTGATGA+TGG | - | chr3.4:99048129-99048148 | MS.gene66836:CDS | 50.0% |
| ! | TTGGCGTCGCTAGAGGTTTT+GGG | + | chr3.4:99047072-99047091 | None:intergenic | 50.0% |
| !! | GGTTCTGGTAATGGGACTTC+AGG | + | chr3.4:99047051-99047070 | None:intergenic | 50.0% |
| !!! | TCGCTAGAGGTTTTGGGTTC+TGG | + | chr3.4:99047066-99047085 | None:intergenic | 50.0% |
| CCTTTCTGCTTTGGCAGGGA+CGG | - | chr3.4:99048600-99048619 | MS.gene66836:intron | 55.0% | |
| GCGGAATTCGATGATGCGTC+GGG | + | chr3.4:99047402-99047421 | None:intergenic | 55.0% | |
| GCTGCTGTTGCATCCAATGG+TGG | - | chr3.4:99048922-99048941 | MS.gene66836:CDS | 55.0% | |
| GGAGTAGTAGTCGGAGGTTG+AGG | + | chr3.4:99046988-99047007 | None:intergenic | 55.0% | |
| GGATTGCTAGCATCCGCAAG+AGG | + | chr3.4:99048243-99048262 | None:intergenic | 55.0% | |
| TGATTGCCTTCTCCGGTCGT+TGG | + | chr3.4:99049287-99049306 | None:intergenic | 55.0% | |
| ! | AGGCACGACGGTTCTGATTG+GGG | + | chr3.4:99046944-99046963 | None:intergenic | 55.0% |
| ! | AGTCGGAGGTTGAGGTGTTC+CGG | + | chr3.4:99046980-99046999 | None:intergenic | 55.0% |
| ! | CGAACCAACGTCACCGACTA+GGG | + | chr3.4:99047277-99047296 | None:intergenic | 55.0% |
| ! | GACGGTTCTGATTGGGGTTG+AGG | + | chr3.4:99046938-99046957 | None:intergenic | 55.0% |
| ! | GAGGCACGACGGTTCTGATT+GGG | + | chr3.4:99046945-99046964 | None:intergenic | 55.0% |
| ! | GGCTTGCTTTGCCTGTGAGA+AGG | - | chr3.4:99047494-99047513 | MS.gene66836:intron | 55.0% |
| ! | GTTGGCGTCGCTAGAGGTTT+TGG | + | chr3.4:99047073-99047092 | None:intergenic | 55.0% |
| ! | TCGAACCAACGTCACCGACT+AGG | + | chr3.4:99047278-99047297 | None:intergenic | 55.0% |
| CCGTCCCTGCCAAAGCAGAA+AGG | + | chr3.4:99048603-99048622 | None:intergenic | 60.0% | |
| CGCCGGAGAAGGAGATTCTG+CGG | + | chr3.4:99047421-99047440 | None:intergenic | 60.0% | |
| GACGGAGGTTGCACAAGCTG+CGG | - | chr3.4:99048618-99048637 | MS.gene66836:intron | 60.0% | |
| GAGGGAGGCGGAGTAGTAGT+CGG | + | chr3.4:99046997-99047016 | None:intergenic | 60.0% | |
| TCTGCACCAACGACCGGAGA+AGG | - | chr3.4:99049278-99049297 | MS.gene66836:CDS | 60.0% | |
| TTCTGCTTTGGCAGGGACGG+AGG | - | chr3.4:99048603-99048622 | MS.gene66836:intron | 60.0% | |
| ! | ACTTCAGGTTTCGCCACCGG+AGG | + | chr3.4:99047036-99047055 | None:intergenic | 60.0% |
| ! | AGGTTGAGGTGTTCCGGTGG+CGG | + | chr3.4:99046974-99046993 | None:intergenic | 60.0% |
| ! | GGAGGCACGACGGTTCTGAT+TGG | + | chr3.4:99046946-99046965 | None:intergenic | 60.0% |
| ! | GGGACTTCAGGTTTCGCCAC+CGG | + | chr3.4:99047039-99047058 | None:intergenic | 60.0% |
| !! | TCTTTGACAGGCGCCGGAGA+AGG | + | chr3.4:99047432-99047451 | None:intergenic | 60.0% |
| GGAGGCGGAGTAGTAGTCGG+AGG | + | chr3.4:99046994-99047013 | None:intergenic | 65.0% | |
| TCAGGTTTCGCCACCGGAGG+CGG | + | chr3.4:99047033-99047052 | None:intergenic | 65.0% | |
| ! | CGGAGGTTGAGGTGTTCCGG+TGG | + | chr3.4:99046977-99046996 | None:intergenic | 65.0% |
| !! | GGTGTTCCGGTGGCGGAAGA+CGG | + | chr3.4:99046967-99046986 | None:intergenic | 65.0% |
| GTGCCTCCGTCTTCCGCCAC+CGG | - | chr3.4:99046958-99046977 | MS.gene66836:CDS | 70.0% | |
| ! | GGCGGAAGACGGAGGCACGA+CGG | + | chr3.4:99046956-99046975 | None:intergenic | 70.0% |
| !! | GGTGGTGGGTTCGAGGGAGG+CGG | + | chr3.4:99047009-99047028 | None:intergenic | 70.0% |
| !! | GTTCCGGTGGCGGAAGACGG+AGG | + | chr3.4:99046964-99046983 | None:intergenic | 70.0% |
| GAACCCACCACCGCCGCCTC+CGG | - | chr3.4:99047017-99047036 | MS.gene66836:CDS | 75.0% | |
| GGTTTCGCCACCGGAGGCGG+CGG | + | chr3.4:99047030-99047049 | None:intergenic | 75.0% | |
| !! | AGGCGGCGGTGGTGGGTTCG+AGG | + | chr3.4:99047016-99047035 | None:intergenic | 75.0% |
| !! | GGCGGCGGTGGTGGGTTCGA+GGG | + | chr3.4:99047015-99047034 | None:intergenic | 75.0% |
| !! | GGCGGTGGTGGGTTCGAGGG+AGG | + | chr3.4:99047012-99047031 | None:intergenic | 75.0% |
| ! | CCACCGGAGGCGGCGGTGGT+GGG | + | chr3.4:99047023-99047042 | None:intergenic | 80.0% |
| ! | TTCGCCACCGGAGGCGGCGG+TGG | + | chr3.4:99047027-99047046 | None:intergenic | 80.0% |
| ! | CCCACCACCGCCGCCTCCGG+TGG | - | chr3.4:99047020-99047039 | MS.gene66836:CDS | 85.0% |
| ! | GCCACCGGAGGCGGCGGTGG+TGG | + | chr3.4:99047024-99047043 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 99046928 | 99049322 | 99046928 | ID=MS.gene66836 |
| chr3.4 | mRNA | 99046928 | 99049322 | 99046928 | ID=MS.gene66836.t1;Parent=MS.gene66836 |
| chr3.4 | exon | 99048735 | 99049322 | 99048735 | ID=MS.gene66836.t1.exon1;Parent=MS.gene66836.t1 |
| chr3.4 | CDS | 99048735 | 99049322 | 99048735 | ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1 |
| chr3.4 | exon | 99047975 | 99048394 | 99047975 | ID=MS.gene66836.t1.exon2;Parent=MS.gene66836.t1 |
| chr3.4 | CDS | 99047975 | 99048394 | 99047975 | ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1 |
| chr3.4 | exon | 99047523 | 99047658 | 99047523 | ID=MS.gene66836.t1.exon3;Parent=MS.gene66836.t1 |
| chr3.4 | CDS | 99047523 | 99047658 | 99047523 | ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1 |
| chr3.4 | exon | 99047200 | 99047330 | 99047200 | ID=MS.gene66836.t1.exon4;Parent=MS.gene66836.t1 |
| chr3.4 | CDS | 99047200 | 99047330 | 99047200 | ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1 |
| chr3.4 | exon | 99046928 | 99047104 | 99046928 | ID=MS.gene66836.t1.exon5;Parent=MS.gene66836.t1 |
| chr3.4 | CDS | 99046928 | 99047104 | 99046928 | ID=cds.MS.gene66836.t1;Parent=MS.gene66836.t1 |
| Gene Sequence |
| Protein sequence |