AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98552

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98552.t1 MTR_5g085170 89.485 447 33 1 1 447 1 433 0.0 798
MS.gene98552.t1 MTR_3g116120 84.679 483 38 3 1 447 1 483 0.0 789
MS.gene98552.t1 MTR_6g053260 77.091 275 18 4 1 275 1 230 2.28e-127 385
MS.gene98552.t1 MTR_6g053260 91.089 101 9 0 344 444 234 334 1.31e-51 185
MS.gene98552.t1 MTR_3g099000 33.916 286 125 7 44 267 15 298 1.05e-38 147
MS.gene98552.t1 MTR_4g069830 26.689 296 158 9 39 280 133 423 1.30e-22 101
MS.gene98552.t1 MTR_4g069830 26.689 296 158 9 39 280 133 423 1.36e-22 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98552.t1 AT2G33610 50.350 429 179 8 38 438 41 463 2.18e-134 395
MS.gene98552.t1 AT1G21700 23.333 510 291 16 23 436 158 663 2.07e-36 142
MS.gene98552.t1 AT2G47620 28.049 492 249 16 39 429 7 494 2.40e-35 137
MS.gene98552.t1 AT2G47620 34.559 272 128 9 39 263 7 275 4.83e-32 126
MS.gene98552.t1 AT4G34430 29.893 281 146 8 39 268 139 419 1.67e-21 98.2
MS.gene98552.t1 AT4G34430 29.893 281 146 8 39 268 139 419 1.70e-21 98.2
MS.gene98552.t1 AT4G34430 29.893 281 146 8 39 268 139 419 1.70e-21 98.2
MS.gene98552.t1 AT4G34430 29.893 281 146 8 39 268 139 419 1.75e-21 98.2

Find 97 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAGCTATTACAAATTTC+GGG 0.188443 5.2:+72540820 MS.gene98552:CDS
CTTGAAGCTATTACAAATTT+CGG 0.191024 5.2:+72540819 MS.gene98552:CDS
GGCTGCTTTCCTTTCTGCTT+TGG 0.311179 5.2:+72541046 MS.gene98552:CDS
TTTGTAAACCCTAGGGTTCT+TGG 0.330782 5.2:-72540358 None:intergenic
GCTTTCCTTTCTGCTTTGGC+AGG 0.337459 5.2:+72541050 MS.gene98552:CDS
CGTTCTGGTAATGGGACTTC+CGG 0.345250 5.2:-72540231 None:intergenic
CGCTCAGTAAACCTCTCATA+TGG 0.352549 5.2:+72540541 MS.gene98552:CDS
CCTAGGGTTCTTGGAAGATT+CGG 0.357797 5.2:-72540349 None:intergenic
GGAGGCTCGACGGTTCTATT+TGG 0.364466 5.2:-72540162 None:intergenic
CTAGGGTTCTTGGAAGATTC+GGG 0.380857 5.2:-72540348 None:intergenic
AATGTGTCTCACACCTCTTA+TGG 0.384773 5.2:+72540998 MS.gene98552:CDS
ACCGCCTCCGGTGGCGAAAC+CGG 0.394595 5.2:+72540212 MS.gene98552:CDS
TTTACCAGACGCAACAGTTT+CGG 0.399478 5.2:-72540964 None:intergenic
TCTTCGTTTGCTCCAACTGC+TGG 0.408427 5.2:-72541379 None:intergenic
TCCGGTTTCGCCACCGGAGG+CGG 0.412679 5.2:-72540213 None:intergenic
TTACAAATTTCGGGGATGAT+TGG 0.415906 5.2:+72540829 MS.gene98552:CDS
GCAGATTCTCTTAGCTTCAT+TGG 0.416279 5.2:-72540628 None:intergenic
CAAAATTGATAAGCTTGTCT+TGG 0.431069 5.2:-72541325 None:intergenic
ACGGATTTCGCATTCGTGAA+TGG 0.432570 5.2:-72540319 None:intergenic
AACACTGCAACCACCGCCTC+CGG 0.442861 5.2:+72540200 MS.gene98552:CDS
CCTTTCTGCTTTGGCAGGGA+CGG 0.446609 5.2:+72541055 MS.gene98552:CDS
AGGAGATTCTGTAGAATTTG+AGG 0.449273 5.2:-72540592 None:intergenic
TCTTGCTGCAATGTATTCCT+TGG 0.449690 5.2:-72541161 None:intergenic
TTCTACAGAATCTCCTTCTC+TGG 0.459502 5.2:+72540599 MS.gene98552:CDS
AGGGTTGCTCATCAAGTTGT+TGG 0.467288 5.2:+72540855 MS.gene98552:CDS
ATTCTCTTAGCTTCATTGGC+AGG 0.470496 5.2:-72540624 None:intergenic
AAAGCAGCCTGAGCCATGAT+AGG 0.474193 5.2:-72541032 None:intergenic
GATTCACATTCAGCATCAAC+GGG 0.474269 5.2:-72540942 None:intergenic
TCTAGTTGATTTGTAAACAT+TGG 0.479041 5.2:-72541120 None:intergenic
CTGTAGTATTTGTAAACCCT+AGG 0.490342 5.2:-72540366 None:intergenic
GGGACTTCCGGTTTCGCCAC+CGG 0.493960 5.2:-72540219 None:intergenic
CCGAATCTTCCAAGAACCCT+AGG 0.500165 5.2:+72540349 MS.gene98552:CDS
GCCACTCAAGATGGTTCTCA+TGG 0.500382 5.2:+72540292 MS.gene98552:CDS
TTGCACGCAATAGAGATCCT+TGG 0.503227 5.2:-72541226 None:intergenic
GGTTTCGCCACCGGAGGCGG+TGG 0.504542 5.2:-72540210 None:intergenic
GGATGCTAGCAATCCTATCA+TGG 0.508578 5.2:+72541019 MS.gene98552:CDS
CGGTGGTTGCAGTGTTTCGA+CGG 0.513001 5.2:-72540193 None:intergenic
CTTTCCTTTCTGCTTTGGCA+GGG 0.515547 5.2:+72541051 MS.gene98552:CDS
ATTCGTGGGAACTATAGGAT+TGG 0.516233 5.2:+72540714 MS.gene98552:CDS
ACTGCACCAACGACCGGAGA+AGG 0.516427 5.2:+72541446 MS.gene98552:CDS
TGATTGCCTTCTCCGGTCGT+TGG 0.518632 5.2:-72541452 None:intergenic
TTACCAGAACGCAAAACCTC+TGG 0.520797 5.2:+72540243 MS.gene98552:CDS
AAAACAACTGCACCAACGAC+CGG 0.528919 5.2:+72541440 MS.gene98552:CDS
TAGCAATCCTATCATGGCTC+AGG 0.529443 5.2:+72541025 MS.gene98552:CDS
GGATTGCTAGCATCCATAAG+AGG 0.529525 5.2:-72541011 None:intergenic
ACGAGCAACACATTCCTTGT+CGG 0.529759 5.2:-72540883 None:intergenic
GGCTTCAACTGATCGCCAAA+AGG 0.531669 5.2:-72540918 None:intergenic
TGTAGTATTTGTAAACCCTA+GGG 0.534357 5.2:-72540365 None:intergenic
AGAACCATCTTGAGTGGCTA+GGG 0.535119 5.2:-72540287 None:intergenic
TGGAACCAACGTCACCGACT+AGG 0.535199 5.2:-72540458 None:intergenic
CGTCGTATTATTCTTATCAC+AGG 0.538639 5.2:-72540673 None:intergenic
GGATTCACATTCAGCATCAA+CGG 0.539105 5.2:-72540943 None:intergenic
ATACAAGATTGAGCTGATCA+AGG 0.541570 5.2:-72541412 None:intergenic
ATCTGAAGCATTACCACCAT+CGG 0.545048 5.2:-72541198 None:intergenic
ATGTATTCCTTGGAAATGAT+CGG 0.546642 5.2:-72541151 None:intergenic
GATGCTTCTGTTGCATCCGA+TGG 0.547872 5.2:+72541182 MS.gene98552:CDS
GGTTTACTGAGCGAAGAAGA+AGG 0.548651 5.2:-72540531 None:intergenic
ATTTCGGGGATGATTGGAAG+AGG 0.548838 5.2:+72540835 MS.gene98552:CDS
ATCTTGAGTGGCTAGGGACA+AGG 0.549549 5.2:-72540281 None:intergenic
TTAATAACCGATCATTTCCA+AGG 0.554025 5.2:+72541144 MS.gene98552:CDS
GCTCAGTAAACCTCTCATAT+GGG 0.554794 5.2:+72540542 MS.gene98552:CDS
TGAGGATTTAGACGTGCTGA+TGG 0.555586 5.2:+72541346 MS.gene98552:CDS
TGCAAATTTACAGCTTGAGA+AGG 0.556628 5.2:+72541244 MS.gene98552:CDS
CGAATCTTCCAAGAACCCTA+GGG 0.558609 5.2:+72540350 MS.gene98552:CDS
AAAATCAAAGACTCTTCGAA+TGG 0.560578 5.2:-72540478 None:intergenic
TCATTGGCAGGCACCAGAGA+AGG 0.560713 5.2:-72540612 None:intergenic
TTGCTCATCAAGTTGTTGGT+AGG 0.563248 5.2:+72540859 MS.gene98552:CDS
CCGTCCCTGCCAAAGCAGAA+AGG 0.564962 5.2:-72541055 None:intergenic
TGGAAGATTCGGGAATGTAA+CGG 0.569089 5.2:-72540338 None:intergenic
ATAATACGACGTTGTGTGCG+AGG 0.569617 5.2:+72540685 MS.gene98552:CDS
TAATACAGAATTCAAGAGAG+TGG 0.570887 5.2:+72540743 MS.gene98552:CDS
GAGAACCATCTTGAGTGGCT+AGG 0.580360 5.2:-72540288 None:intergenic
AGTGTTTCGACGGCGGAAGA+CGG 0.582593 5.2:-72540183 None:intergenic
GAATCCGAAACTGTTGCGTC+TGG 0.583173 5.2:+72540960 MS.gene98552:CDS
AATGCTTCAGATTCTATCCA+AGG 0.586687 5.2:+72541209 MS.gene98552:CDS
GAGAATCTGCAGTGTCTGCA+TGG 0.586827 5.2:+72540641 MS.gene98552:CDS
TTGTCCCTAGCCACTCAAGA+TGG 0.586862 5.2:+72540283 MS.gene98552:CDS
ACTGCAACCACCGCCTCCGG+TGG 0.586976 5.2:+72540203 MS.gene98552:CDS
TCTTTATCTTCCCATATGAG+AGG 0.587798 5.2:-72540552 None:intergenic
CAAGAGAGTGGAGATAAGTG+AGG 0.590112 5.2:+72540755 MS.gene98552:CDS
GACGGTTCTATTTGGCGTTG+AGG 0.590322 5.2:-72540154 None:intergenic
GGCGGAAGACGGAGGCTCGA+CGG 0.590550 5.2:-72540172 None:intergenic
GATTATGTTGGCGTCGCCAG+AGG 0.591406 5.2:-72540259 None:intergenic
GCTAGGGACAAGGATTATGT+TGG 0.592687 5.2:-72540271 None:intergenic
TTTCGGGGATGATTGGAAGA+GGG 0.613337 5.2:+72540836 MS.gene98552:CDS
AAAATCCTAGTCGGTGACGT+TGG 0.616879 5.2:+72540453 MS.gene98552:CDS
TGAAGCTATTACAAATTTCG+GGG 0.621595 5.2:+72540821 MS.gene98552:CDS
CCACTCAAGATGGTTCTCAT+GGG 0.624877 5.2:+72540293 MS.gene98552:CDS
TGGTTGCAGTGTTTCGACGG+CGG 0.630155 5.2:-72540190 None:intergenic
ACTTCCGGTTTCGCCACCGG+AGG 0.635420 5.2:-72540216 None:intergenic
GCTTCTGTTGCATCCGATGG+TGG 0.643243 5.2:+72541185 MS.gene98552:CDS
CCCATGAGAACCATCTTGAG+TGG 0.645166 5.2:-72540293 None:intergenic
GTTTCGACGGCGGAAGACGG+AGG 0.649104 5.2:-72540180 None:intergenic
AGTTGTTGGTAGGACCGACA+AGG 0.658858 5.2:+72540869 MS.gene98552:CDS
TCACATTCAGCATCAACGGG+AGG 0.659217 5.2:-72540939 None:intergenic
GATGTTCGCAAAATCCTAGT+CGG 0.674756 5.2:+72540444 MS.gene98552:CDS
TGAGAAGGAAGAATCAGACG+TGG 0.680762 5.2:+72541259 MS.gene98552:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CTTGAAGCTATTACAAATTT+CGG + chr5.2:72540819-72540838 MS.gene98552:CDS 25.0%
! TTGAAGCTATTACAAATTTC+GGG + chr5.2:72540820-72540839 MS.gene98552:CDS 25.0%
!!! TCTAGTTGATTTGTAAACAT+TGG - chr5.2:72541123-72541142 None:intergenic 25.0%
AAAATCAAAGACTCTTCGAA+TGG - chr5.2:72540481-72540500 None:intergenic 30.0%
ATGTATTCCTTGGAAATGAT+CGG - chr5.2:72541154-72541173 None:intergenic 30.0%
CAAAATTGATAAGCTTGTCT+TGG - chr5.2:72541328-72541347 None:intergenic 30.0%
CAACAGAAAAATCACATTCA+CGG + chr5.2:72540422-72540441 MS.gene98552:CDS 30.0%
TAATACAGAATTCAAGAGAG+TGG + chr5.2:72540743-72540762 MS.gene98552:CDS 30.0%
TGAAGCTATTACAAATTTCG+GGG + chr5.2:72540821-72540840 MS.gene98552:CDS 30.0%
TGTAGTATTTGTAAACCCTA+GGG - chr5.2:72540368-72540387 None:intergenic 30.0%
TTAATAACCGATCATTTCCA+AGG + chr5.2:72541144-72541163 MS.gene98552:CDS 30.0%
! AGACAAGCTTATCAATTTTG+AGG + chr5.2:72541328-72541347 MS.gene98552:CDS 30.0%
! GTGAATGTGATTTTTCTGTT+GGG - chr5.2:72540423-72540442 None:intergenic 30.0%
!! CTTTGATTTTCTTGAAGCTT+GGG + chr5.2:72540491-72540510 MS.gene98552:CDS 30.0%
!! TCTTTGATTTTCTTGAAGCT+TGG + chr5.2:72540490-72540509 MS.gene98552:CDS 30.0%
!! TTTGATTTTCTTGAAGCTTG+GGG + chr5.2:72540492-72540511 MS.gene98552:CDS 30.0%
AATGCTTCAGATTCTATCCA+AGG + chr5.2:72541209-72541228 MS.gene98552:CDS 35.0%
AGGAGATTCTGTAGAATTTG+AGG - chr5.2:72540595-72540614 None:intergenic 35.0%
ATACAAGATTGAGCTGATCA+AGG - chr5.2:72541415-72541434 None:intergenic 35.0%
CGTCGTATTATTCTTATCAC+AGG - chr5.2:72540676-72540695 None:intergenic 35.0%
CTGTAGTATTTGTAAACCCT+AGG - chr5.2:72540369-72540388 None:intergenic 35.0%
GTGAGGAGACAAAAAATGAA+TGG + chr5.2:72540772-72540791 MS.gene98552:CDS 35.0%
TCTTTATCTTCCCATATGAG+AGG - chr5.2:72540555-72540574 None:intergenic 35.0%
TGCAAATTTACAGCTTGAGA+AGG + chr5.2:72541244-72541263 MS.gene98552:CDS 35.0%
TTACAAATTTCGGGGATGAT+TGG + chr5.2:72540829-72540848 MS.gene98552:CDS 35.0%
! CGTGAATGTGATTTTTCTGT+TGG - chr5.2:72540424-72540443 None:intergenic 35.0%
! TTTTACATGATTGCCTTCTC+CGG - chr5.2:72541462-72541481 None:intergenic 35.0%
!! GACAAAAAATGAATGGACTG+AGG + chr5.2:72540779-72540798 MS.gene98552:CDS 35.0%
!! GTTTTATTCGTGGGAACTAT+AGG + chr5.2:72540709-72540728 MS.gene98552:CDS 35.0%
AATGTGTCTCACACCTCTTA+TGG + chr5.2:72540998-72541017 MS.gene98552:CDS 40.0%
ATTCGTGGGAACTATAGGAT+TGG + chr5.2:72540714-72540733 MS.gene98552:CDS 40.0%
ATTCTCTTAGCTTCATTGGC+AGG - chr5.2:72540627-72540646 None:intergenic 40.0%
GATGTTCGCAAAATCCTAGT+CGG + chr5.2:72540444-72540463 MS.gene98552:CDS 40.0%
GATTCACATTCAGCATCAAC+GGG - chr5.2:72540945-72540964 None:intergenic 40.0%
GCAGATTCTCTTAGCTTCAT+TGG - chr5.2:72540631-72540650 None:intergenic 40.0%
GCTCAGTAAACCTCTCATAT+GGG + chr5.2:72540542-72540561 MS.gene98552:CDS 40.0%
GGATTCACATTCAGCATCAA+CGG - chr5.2:72540946-72540965 None:intergenic 40.0%
TCTTGCTGCAATGTATTCCT+TGG - chr5.2:72541164-72541183 None:intergenic 40.0%
TGGAAGATTCGGGAATGTAA+CGG - chr5.2:72540341-72540360 None:intergenic 40.0%
TTCTACAGAATCTCCTTCTC+TGG + chr5.2:72540599-72540618 MS.gene98552:CDS 40.0%
TTTACCAGACGCAACAGTTT+CGG - chr5.2:72540967-72540986 None:intergenic 40.0%
TTTGTAAACCCTAGGGTTCT+TGG - chr5.2:72540361-72540380 None:intergenic 40.0%
! AGGTTTTGCGTTCTGGTAAT+GGG - chr5.2:72540242-72540261 None:intergenic 40.0%
! ATCTGAAGCATTACCACCAT+CGG - chr5.2:72541201-72541220 None:intergenic 40.0%
! TTGCTCATCAAGTTGTTGGT+AGG + chr5.2:72540859-72540878 MS.gene98552:CDS 40.0%
!! CGTGGAAAAAGCTATTTCTG+AGG + chr5.2:72541277-72541296 MS.gene98552:CDS 40.0%
!!! CGTTTTCTAGAGCTTCCTTT+TGG + chr5.2:72540903-72540922 MS.gene98552:CDS 40.0%
AAAACAACTGCACCAACGAC+CGG + chr5.2:72541440-72541459 MS.gene98552:CDS 45.0%
AAAATCCTAGTCGGTGACGT+TGG + chr5.2:72540453-72540472 MS.gene98552:CDS 45.0%
ACGAGCAACACATTCCTTGT+CGG - chr5.2:72540886-72540905 None:intergenic 45.0%
ACGGATTTCGCATTCGTGAA+TGG - chr5.2:72540322-72540341 None:intergenic 45.0%
AGAACCATCTTGAGTGGCTA+GGG - chr5.2:72540290-72540309 None:intergenic 45.0%
ATAATACGACGTTGTGTGCG+AGG + chr5.2:72540685-72540704 MS.gene98552:CDS 45.0%
ATTTCGGGGATGATTGGAAG+AGG + chr5.2:72540835-72540854 MS.gene98552:CDS 45.0%
CAAGAGAGTGGAGATAAGTG+AGG + chr5.2:72540755-72540774 MS.gene98552:CDS 45.0%
CCACTCAAGATGGTTCTCAT+GGG + chr5.2:72540293-72540312 MS.gene98552:CDS 45.0%
CCTAGGGTTCTTGGAAGATT+CGG - chr5.2:72540352-72540371 None:intergenic 45.0%
CGAATCTTCCAAGAACCCTA+GGG + chr5.2:72540350-72540369 MS.gene98552:CDS 45.0%
CGCTCAGTAAACCTCTCATA+TGG + chr5.2:72540541-72540560 MS.gene98552:CDS 45.0%
CTAGGGTTCTTGGAAGATTC+GGG - chr5.2:72540351-72540370 None:intergenic 45.0%
CTTTCCTTTCTGCTTTGGCA+GGG + chr5.2:72541051-72541070 MS.gene98552:CDS 45.0%
GCTAGGGACAAGGATTATGT+TGG - chr5.2:72540274-72540293 None:intergenic 45.0%
GGATGCTAGCAATCCTATCA+TGG + chr5.2:72541019-72541038 MS.gene98552:CDS 45.0%
GGATTGCTAGCATCCATAAG+AGG - chr5.2:72541014-72541033 None:intergenic 45.0%
GGTTTACTGAGCGAAGAAGA+AGG - chr5.2:72540534-72540553 None:intergenic 45.0%
TAGCAATCCTATCATGGCTC+AGG + chr5.2:72541025-72541044 MS.gene98552:CDS 45.0%
TGAGAAGGAAGAATCAGACG+TGG + chr5.2:72541259-72541278 MS.gene98552:CDS 45.0%
TGAGGATTTAGACGTGCTGA+TGG + chr5.2:72541346-72541365 MS.gene98552:CDS 45.0%
TTACCAGAACGCAAAACCTC+TGG + chr5.2:72540243-72540262 MS.gene98552:CDS 45.0%
TTGCACGCAATAGAGATCCT+TGG - chr5.2:72541229-72541248 None:intergenic 45.0%
TTTCGGGGATGATTGGAAGA+GGG + chr5.2:72540836-72540855 MS.gene98552:CDS 45.0%
! AGGGTTGCTCATCAAGTTGT+TGG + chr5.2:72540855-72540874 MS.gene98552:CDS 45.0%
! GAGGTTTTGCGTTCTGGTAA+TGG - chr5.2:72540243-72540262 None:intergenic 45.0%
!! GTGCGAGGTGTTTTATTCGT+GGG + chr5.2:72540700-72540719 MS.gene98552:CDS 45.0%
!! TGTGCGAGGTGTTTTATTCG+TGG + chr5.2:72540699-72540718 MS.gene98552:CDS 45.0%
AAAGCAGCCTGAGCCATGAT+AGG - chr5.2:72541035-72541054 None:intergenic 50.0%
ATCTTGAGTGGCTAGGGACA+AGG - chr5.2:72540284-72540303 None:intergenic 50.0%
CCCATGAGAACCATCTTGAG+TGG - chr5.2:72540296-72540315 None:intergenic 50.0%
CCGAATCTTCCAAGAACCCT+AGG + chr5.2:72540349-72540368 MS.gene98552:CDS 50.0%
GAATCCGAAACTGTTGCGTC+TGG + chr5.2:72540960-72540979 MS.gene98552:CDS 50.0%
GACGGTTCTATTTGGCGTTG+AGG - chr5.2:72540157-72540176 None:intergenic 50.0%
GAGAACCATCTTGAGTGGCT+AGG - chr5.2:72540291-72540310 None:intergenic 50.0%
GAGAATCTGCAGTGTCTGCA+TGG + chr5.2:72540641-72540660 MS.gene98552:CDS 50.0%
GATGCTTCTGTTGCATCCGA+TGG + chr5.2:72541182-72541201 MS.gene98552:CDS 50.0%
GCCACTCAAGATGGTTCTCA+TGG + chr5.2:72540292-72540311 MS.gene98552:CDS 50.0%
GCTTTCCTTTCTGCTTTGGC+AGG + chr5.2:72541050-72541069 MS.gene98552:CDS 50.0%
GGAAAAAGAACGCCAGCAGT+TGG + chr5.2:72541367-72541386 MS.gene98552:CDS 50.0%
GGCTTCAACTGATCGCCAAA+AGG - chr5.2:72540921-72540940 None:intergenic 50.0%
TCACATTCAGCATCAACGGG+AGG - chr5.2:72540942-72540961 None:intergenic 50.0%
TCTTCGTTTGCTCCAACTGC+TGG - chr5.2:72541382-72541401 None:intergenic 50.0%
TTGTCCCTAGCCACTCAAGA+TGG + chr5.2:72540283-72540302 MS.gene98552:CDS 50.0%
! AGTTGTTGGTAGGACCGACA+AGG + chr5.2:72540869-72540888 MS.gene98552:CDS 50.0%
! GGCTGCTTTCCTTTCTGCTT+TGG + chr5.2:72541046-72541065 MS.gene98552:CDS 50.0%
!! CGTTCTGGTAATGGGACTTC+CGG - chr5.2:72540234-72540253 None:intergenic 50.0%
AGTGTTTCGACGGCGGAAGA+CGG - chr5.2:72540186-72540205 None:intergenic 55.0%
CCTTTCTGCTTTGGCAGGGA+CGG + chr5.2:72541055-72541074 MS.gene98552:CDS 55.0%
CGGTGGTTGCAGTGTTTCGA+CGG - chr5.2:72540196-72540215 None:intergenic 55.0%
GATTATGTTGGCGTCGCCAG+AGG - chr5.2:72540262-72540281 None:intergenic 55.0%
GCTTCTGTTGCATCCGATGG+TGG + chr5.2:72541185-72541204 MS.gene98552:CDS 55.0%
GGAGGCTCGACGGTTCTATT+TGG - chr5.2:72540165-72540184 None:intergenic 55.0%
TCATTGGCAGGCACCAGAGA+AGG - chr5.2:72540615-72540634 None:intergenic 55.0%
TGATTGCCTTCTCCGGTCGT+TGG - chr5.2:72541455-72541474 None:intergenic 55.0%
TGGTTGCAGTGTTTCGACGG+CGG - chr5.2:72540193-72540212 None:intergenic 55.0%
! TCGCCAGAGGTTTTGCGTTC+TGG - chr5.2:72540249-72540268 None:intergenic 55.0%
! TGGAACCAACGTCACCGACT+AGG - chr5.2:72540461-72540480 None:intergenic 55.0%
AACACTGCAACCACCGCCTC+CGG + chr5.2:72540200-72540219 MS.gene98552:CDS 60.0%
ACTGCACCAACGACCGGAGA+AGG + chr5.2:72541446-72541465 MS.gene98552:CDS 60.0%
CCGTCCCTGCCAAAGCAGAA+AGG - chr5.2:72541058-72541077 None:intergenic 60.0%
ACTTCCGGTTTCGCCACCGG+AGG - chr5.2:72540219-72540238 None:intergenic 65.0%
GGGACTTCCGGTTTCGCCAC+CGG - chr5.2:72540222-72540241 None:intergenic 65.0%
GTTTCGACGGCGGAAGACGG+AGG - chr5.2:72540183-72540202 None:intergenic 65.0%
ACCGCCTCCGGTGGCGAAAC+CGG + chr5.2:72540212-72540231 MS.gene98552:CDS 70.0%
ACTGCAACCACCGCCTCCGG+TGG + chr5.2:72540203-72540222 MS.gene98552:CDS 70.0%
GGCGGAAGACGGAGGCTCGA+CGG - chr5.2:72540175-72540194 None:intergenic 70.0%
TCCGGTTTCGCCACCGGAGG+CGG - chr5.2:72540216-72540235 None:intergenic 70.0%
GGTTTCGCCACCGGAGGCGG+TGG - chr5.2:72540213-72540232 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 72540147 72541490 72540147 ID=MS.gene98552
chr5.2 mRNA 72540147 72541490 72540147 ID=MS.gene98552.t1;Parent=MS.gene98552
chr5.2 exon 72540147 72541490 72540147 ID=MS.gene98552.t1.exon1;Parent=MS.gene98552.t1
chr5.2 CDS 72540147 72541490 72540147 ID=cds.MS.gene98552.t1;Parent=MS.gene98552.t1
Gene Sequence

>MS.gene98552

ATGGCGACCTCAACGCCAAATAGAACCGTCGAGCCTCCGTCTTCCGCCGTCGAAACACTGCAACCACCGCCTCCGGTGGCGAAACCGGAAGTCCCATTACCAGAACGCAAAACCTCTGGCGACGCCAACATAATCCTTGTCCCTAGCCACTCAAGATGGTTCTCATGGGATTCCATTCACGAATGCGAAATCCGTTACATTCCCGAATCTTCCAAGAACCCTAGGGTTTACAAATACTACAGAAACTCTATCGTCAAGTTTTTCAGATTCAATCCCAACAGAAAAATCACATTCACGGATGTTCGCAAAATCCTAGTCGGTGACGTTGGTTCCATTCGAAGAGTCTTTGATTTTCTTGAAGCTTGGGGTTTAATCAATTATGATCCTTCTTCTTCGCTCAGTAAACCTCTCATATGGGAAGATAAAGATGCTAAACTCGACGCAGCCTCAAATTCTACAGAATCTCCTTCTCTGGTGCCTGCCAATGAAGCTAAGAGAATCTGCAGTGTCTGCATGGCTTGCTTTGCCTGTGATAAGAATAATACGACGTTGTGTGCGAGGTGTTTTATTCGTGGGAACTATAGGATTGGTATGAGTAATACAGAATTCAAGAGAGTGGAGATAAGTGAGGAGACAAAAAATGAATGGACTGAGGAAGAAACACTGAATCTTCTTGAAGCTATTACAAATTTCGGGGATGATTGGAAGAGGGTTGCTCATCAAGTTGTTGGTAGGACCGACAAGGAATGTGTTGCTCGTTTTCTAGAGCTTCCTTTTGGCGATCAGTTGAAGCCTCCCGTTGATGCTGAATGTGAATCCGAAACTGTTGCGTCTGGTAAATCTAGTAAGAGAATGTGTCTCACACCTCTTATGGATGCTAGCAATCCTATCATGGCTCAGGCTGCTTTCCTTTCTGCTTTGGCAGGGACGGAGATTGCACAAGCTGCAGCTCAAGCTGCTCTGACAAGTTTGTCCAATGTTTACAAATCAACTAGAATTAATAACCGATCATTTCCAAGGAATACATTGCAGCAAGATGCTTCTGTTGCATCCGATGGTGGTAATGCTTCAGATTCTATCCAAGGATCTCTATTGCGTGCAAATTTACAGCTTGAGAAGGAAGAATCAGACGTGGAAAAAGCTATTTCTGAGGTTATAGAAGTTCAGATGAAAAATATCCAAGACAAGCTTATCAATTTTGAGGATTTAGACGTGCTGATGGAAAAAGAACGCCAGCAGTTGGAGCAAACGAAGAATTTGTATTTCCTTGATCAGCTCAATCTTGTATTTCGTAAAACAACTGCACCAACGACCGGAGAAGGCAATCATGTAAAAACTAATTGA
Protein sequence

>MS.gene98552.t1

MATSTPNRTVEPPSSAVETLQPPPPVAKPEVPLPERKTSGDANIILVPSHSRWFSWDSIHECEIRYIPESSKNPRVYKYYRNSIVKFFRFNPNRKITFTDVRKILVGDVGSIRRVFDFLEAWGLINYDPSSSLSKPLIWEDKDAKLDAASNSTESPSLVPANEAKRICSVCMACFACDKNNTTLCARCFIRGNYRIGMSNTEFKRVEISEETKNEWTEEETLNLLEAITNFGDDWKRVAHQVVGRTDKECVARFLELPFGDQLKPPVDAECESETVASGKSSKRMCLTPLMDASNPIMAQAAFLSALAGTEIAQAAAQAALTSLSNVYKSTRINNRSFPRNTLQQDASVASDGGNASDSIQGSLLRANLQLEKEESDVEKAISEVIEVQMKNIQDKLINFEDLDVLMEKERQQLEQTKNLYFLDQLNLVFRKTTAPTTGEGNHVKTN