AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014301


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014301.t1 MTR_3g116120 97.930 483 10 0 1 483 1 483 0.0 974
MS.gene014301.t1 MTR_5g085170 81.781 483 38 3 1 483 1 433 0.0 765
MS.gene014301.t1 MTR_6g053260 52.807 481 79 11 1 480 1 334 2.66e-128 389
MS.gene014301.t1 MTR_3g099000 27.205 533 264 12 47 469 6 524 2.27e-53 188
MS.gene014301.t1 MTR_3g088480 25.388 516 282 18 56 474 170 679 7.21e-33 133
MS.gene014301.t1 MTR_4g069830 29.643 280 148 6 51 281 133 412 1.77e-28 120
MS.gene014301.t1 MTR_4g069830 29.643 280 148 6 51 281 133 412 1.84e-28 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014301.t1 AT2G33610 51.945 437 188 8 48 474 39 463 3.65e-146 426
MS.gene014301.t1 AT2G47620 27.846 492 274 11 51 465 7 494 2.92e-38 146
MS.gene014301.t1 AT1G21700 24.423 520 297 17 35 472 158 663 2.85e-37 146
MS.gene014301.t1 AT2G47620 31.419 296 153 6 51 300 7 298 1.14e-33 131
MS.gene014301.t1 AT4G34430 30.686 277 146 7 51 281 139 415 3.19e-25 110
MS.gene014301.t1 AT4G34430 30.686 277 146 7 51 281 139 415 3.46e-25 110
MS.gene014301.t1 AT4G34430 30.686 277 146 7 51 281 139 415 3.46e-25 110
MS.gene014301.t1 AT4G34430 30.686 277 146 7 51 281 139 415 3.53e-25 110

Find 122 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCGTCGCTAGAGGTTT+TGG 0.216425 3.1:+91737012 None:intergenic
CTTGAAGCTATTACGAATTT+CGG 0.268562 3.1:-91736091 MS.gene014301:CDS
GAGGCACGACGGTTCTGTTT+GGG 0.304033 3.1:+91737140 None:intergenic
GGCTGCTTTCCTTTCTGCTT+TGG 0.304195 3.1:-91735498 MS.gene014301:CDS
GGTTCTGGTAATGGGACTTC+AGG 0.304961 3.1:+91737034 None:intergenic
TTCTGAGGTTACAGAAGTTC+AGG 0.308719 3.1:-91735060 MS.gene014301:intron
GCCACCGGAGGCGGCGGTGG+TGG 0.310149 3.1:+91737061 None:intergenic
TTTGTAAACCCTAGGGTTCT+TGG 0.330782 3.1:+91736907 None:intergenic
AGGCGGCGGTGGTGGGTTCG+AGG 0.332048 3.1:+91737069 None:intergenic
GCTTTCCTTTCTGCTTTGGC+AGG 0.337459 3.1:-91735494 MS.gene014301:CDS
GAGAAGGCAATCATGTAAAA+AGG 0.339330 3.1:-91734795 MS.gene014301:CDS
TTTATCCGACGCAACAGTTT+CGG 0.342652 3.1:+91735889 None:intergenic
ATTCGTGGAAATTATCGAAT+TGG 0.350506 3.1:-91736196 MS.gene014301:CDS
CCTAGGGTTCTTGGAAGATT+CGG 0.357797 3.1:+91736916 None:intergenic
GGAGGCACGACGGTTCTGTT+TGG 0.358696 3.1:+91737139 None:intergenic
CGCTCAGTAAACCTCTCAAA+TGG 0.370402 3.1:-91736724 MS.gene014301:CDS
CTAGGGTTCTTGGAAGATTC+GGG 0.380857 3.1:+91736917 None:intergenic
ATTCGATGCTGCGTCGGGTT+TGG 0.382011 3.1:+91736688 None:intergenic
GACGGTTCTGTTTGGGGTTG+AGG 0.382202 3.1:+91737147 None:intergenic
AGTCGGAGGTTGAGGTGTTC+CGG 0.392524 3.1:+91737105 None:intergenic
TTCGCCACCGGAGGCGGCGG+TGG 0.405270 3.1:+91737058 None:intergenic
TGAGGATTTAGACGTGCTAA+TGG 0.416011 3.1:-91734911 MS.gene014301:CDS
TTACGAATTTCGGTGATGAT+TGG 0.419721 3.1:-91736081 MS.gene014301:CDS
CCTTTCTGCTTTGGCAGGGA+CGG 0.421374 3.1:-91735489 MS.gene014301:CDS
AAAAGAACCTGAGCCATGAT+AGG 0.436935 3.1:+91735821 None:intergenic
TCTTTGTTTGCTCCAACTGC+TGG 0.439517 3.1:+91734878 None:intergenic
CCACCGGAGGCGGCGGTGGT+GGG 0.442186 3.1:+91737062 None:intergenic
TCAGGTTTCGCCACCGGAGG+CGG 0.443862 3.1:+91737052 None:intergenic
ACGGATTTCGCATTCGTGAA+TGG 0.445293 3.1:+91736946 None:intergenic
GGTGGTGGGTTCGAGGGAGG+CGG 0.448251 3.1:+91737076 None:intergenic
GCGGAATTCGATGCTGCGTC+GGG 0.449596 3.1:+91736683 None:intergenic
TGGAAGATTCGGGAATGTTA+CGG 0.464080 3.1:+91736927 None:intergenic
TTGCACGCAATAAAGATCCT+TGG 0.465240 3.1:+91735126 None:intergenic
ATTCTCTTAGCTTCTTTGAC+AGG 0.466079 3.1:+91736641 None:intergenic
AGGGTTGCTCATCAAGTTGT+TGG 0.467288 3.1:-91736055 MS.gene014301:CDS
GAACCCACCACCGCCGCCTC+CGG 0.468860 3.1:-91737065 MS.gene014301:CDS
GTGCCTCCGTCTTCCGCCAC+CGG 0.470261 3.1:-91737124 MS.gene014301:CDS
ATCTGAAGCATTACCACCAT+TGG 0.471038 3.1:+91735154 None:intergenic
GATTCACATTCAGCATCAAC+GGG 0.474269 3.1:+91735911 None:intergenic
AATCAACTAGAATTAATTAC+CGG 0.474504 3.1:-91735412 MS.gene014301:CDS
TCTAGTTGATTTGTAAACAT+TGG 0.479041 3.1:+91735424 None:intergenic
GGCGGTGGTGGGTTCGAGGG+AGG 0.482062 3.1:+91737073 None:intergenic
CAAAATTGATAAGCTTGTCC+TGG 0.486513 3.1:+91734932 None:intergenic
CTGTAGTATTTGTAAACCCT+AGG 0.490342 3.1:+91736899 None:intergenic
TGGAACCAACGTCACCGACT+AGG 0.492371 3.1:+91736807 None:intergenic
TCTGCTCCTCGCATTGATGA+TGG 0.492996 3.1:-91735953 MS.gene014301:CDS
CCGAATCTTCCAAGAACCCT+AGG 0.500165 3.1:-91736916 MS.gene014301:CDS
GCCACTCAAGATGGTTCTCA+TGG 0.500382 3.1:-91736973 MS.gene014301:CDS
GGTGTTCCGGTGGCGGAAGA+CGG 0.500983 3.1:+91737118 None:intergenic
AGGTTGAGGTGTTCCGGTGG+CGG 0.501069 3.1:+91737111 None:intergenic
GGGACTTCAGGTTTCGCCAC+CGG 0.504355 3.1:+91737046 None:intergenic
TGCGGAATTCGATGCTGCGT+CGG 0.506487 3.1:+91736682 None:intergenic
GGTTTCGCCACCGGAGGCGG+CGG 0.509368 3.1:+91737055 None:intergenic
TCTTTGACAGGCGCCGGAGA+AGG 0.514796 3.1:+91736653 None:intergenic
CTTTCCTTTCTGCTTTGGCA+GGG 0.515547 3.1:-91735493 MS.gene014301:CDS
TGATTGCCTTCTCCGGTCGT+TGG 0.518632 3.1:+91734805 None:intergenic
GATGCTGCTGTTGCATCCAA+TGG 0.519252 3.1:-91735170 MS.gene014301:CDS
GGCTTGCTTTGCCTGTGAGA+AGG 0.520661 3.1:-91736588 MS.gene014301:intron
ATAAAAGATTGAGCTGATCA+AGG 0.521081 3.1:+91734845 None:intergenic
ACGAGCAACACATTCCTTGT+CGG 0.522938 3.1:+91736027 None:intergenic
GGATAAAGAACGCCAGCAGT+TGG 0.527567 3.1:-91734890 MS.gene014301:CDS
ATCAATGCGAGGAGCAGACT+CGG 0.528293 3.1:+91735958 None:intergenic
GGATGCTAGCAATCCTATCA+TGG 0.529881 3.1:-91735834 MS.gene014301:CDS
TGCAGAAACTGATCACCAAA+AGG 0.531795 3.1:+91735992 None:intergenic
AGAACCATCTTGAGTGGCTA+GGG 0.532947 3.1:+91736978 None:intergenic
TAGCAATCCTATCATGGCTC+AGG 0.533854 3.1:-91735828 MS.gene014301:intron
TCTTTATCTTCCCATTTGAG+AGG 0.534057 3.1:+91736713 None:intergenic
TGTAGTATTTGTAAACCCTA+GGG 0.534357 3.1:+91736900 None:intergenic
GGAACCAACGTCACCGACTA+GGG 0.535194 3.1:+91736808 None:intergenic
AAAACATCTGCACCAACGAC+CGG 0.535739 3.1:-91734817 MS.gene014301:CDS
TCTGCACCAACGACCGGAGA+AGG 0.536832 3.1:-91734811 MS.gene014301:CDS
GGATTCACATTCAGCATCAA+CGG 0.539105 3.1:+91735910 None:intergenic
GCTCAGTAAACCTCTCAAAT+GGG 0.539806 3.1:-91736723 MS.gene014301:CDS
CCCACCACCGCCGCCTCCGG+TGG 0.540370 3.1:-91737062 MS.gene014301:CDS
TTAGCTTCTTTGACAGGCGC+CGG 0.542076 3.1:+91736647 None:intergenic
ATTTCGGTGATGATTGGAAG+AGG 0.544103 3.1:-91736075 MS.gene014301:CDS
AACTAAACTGACCTTCTCAC+AGG 0.545557 3.1:+91736577 None:intergenic
GCTAGGGACTAGTATTAAGT+TGG 0.546014 3.1:+91736994 None:intergenic
GGTTTACTGAGCGAAGAAGA+AGG 0.548651 3.1:+91736734 None:intergenic
TTCTGCTTTGGCAGGGACGG+AGG 0.550159 3.1:-91735486 MS.gene014301:CDS
TGCAAATTTACAGCTTGAGA+AGG 0.556628 3.1:-91735108 MS.gene014301:CDS
TTCCGCAGAATCTCCTTCTC+CGG 0.556844 3.1:-91736666 MS.gene014301:CDS
CGAATCTTCCAAGAACCCTA+GGG 0.558609 3.1:-91736915 MS.gene014301:CDS
GGAGTATTAGTCGGAGGTTG+AGG 0.559490 3.1:+91737097 None:intergenic
AAAATCAAAGACTCTTCGAA+TGG 0.560578 3.1:+91736787 None:intergenic
CCTTGCTGCAATGTATTCCT+CGG 0.560596 3.1:+91735383 None:intergenic
ATGTATTCCTCGGAAATGAC+CGG 0.561368 3.1:+91735393 None:intergenic
TTGCTCATCAAGTTGTTGGT+AGG 0.563248 3.1:-91736051 MS.gene014301:CDS
CCGTCCCTGCCAAAGCAGAA+AGG 0.564962 3.1:+91735489 None:intergenic
GGCGGCGGTGGTGGGTTCGA+GGG 0.565038 3.1:+91737070 None:intergenic
AGGCACGACGGTTCTGTTTG+GGG 0.565942 3.1:+91737141 None:intergenic
TATTAAGTTGGCGTCGCTAG+AGG 0.569207 3.1:+91737006 None:intergenic
TAATACAGAATTCAAGAGAG+TGG 0.570887 3.1:-91736167 MS.gene014301:CDS
GAGAACCATCTTGAGTGGCT+AGG 0.580360 3.1:+91736977 None:intergenic
GACGGAGGTTGCACAAGCTG+CGG 0.582049 3.1:-91735471 MS.gene014301:CDS
AATGCTTCAGATTCTATCCA+AGG 0.586687 3.1:-91735143 MS.gene014301:CDS
CAAGAGAGTGGAGATAAGTG+AGG 0.590112 3.1:-91736155 MS.gene014301:CDS
ACTTCAGGTTTCGCCACCGG+AGG 0.593361 3.1:+91737049 None:intergenic
TAGTCCCTAGCCACTCAAGA+TGG 0.598302 3.1:-91736982 MS.gene014301:CDS
TTAATTACCGGTCATTTCCG+AGG 0.609744 3.1:-91735400 MS.gene014301:CDS
TTTCGGTGATGATTGGAAGA+GGG 0.613337 3.1:-91736074 MS.gene014301:CDS
AATGTGTCTCACACCTCTTG+CGG 0.617103 3.1:-91735855 MS.gene014301:CDS
GGATTGCTAGCATCCGCAAG+AGG 0.621759 3.1:+91735842 None:intergenic
CCACTCAAGATGGTTCTCAT+GGG 0.624877 3.1:-91736972 MS.gene014301:CDS
CGCCGGAGAAGGAGATTCTG+CGG 0.634496 3.1:+91736664 None:intergenic
CCGAGGAATACATTGCAGCA+AGG 0.638324 3.1:-91735383 MS.gene014301:intron
TGAATCCGAAACTGTTGCGT+CGG 0.639096 3.1:-91735894 MS.gene014301:CDS
CGGAGGTTGAGGTGTTCCGG+TGG 0.643233 3.1:+91737108 None:intergenic
CCCATGAGAACCATCTTGAG+TGG 0.645166 3.1:+91736972 None:intergenic
GTTCCGGTGGCGGAAGACGG+AGG 0.648161 3.1:+91737121 None:intergenic
GAGGGAGGCGGAGTATTAGT+CGG 0.653700 3.1:+91737088 None:intergenic
AGTTGTTGGTAGGACCGACA+AGG 0.658858 3.1:-91736041 MS.gene014301:CDS
TCACATTCAGCATCAACGGG+AGG 0.659217 3.1:+91735914 None:intergenic
GATGTTCGCAAAACCCTAGT+CGG 0.661918 3.1:-91736821 MS.gene014301:CDS
ATAATATGACGTTGTGTGCG+AGG 0.667737 3.1:-91736225 MS.gene014301:CDS
TGAGAAGGAAGAATCAGACG+TGG 0.680762 3.1:-91735093 MS.gene014301:CDS
AAAACCCTAGTCGGTGACGT+TGG 0.681388 3.1:-91736812 MS.gene014301:CDS
GGCGGAAGACGGAGGCACGA+CGG 0.688333 3.1:+91737129 None:intergenic
GCTGCTGTTGCATCCAATGG+TGG 0.695124 3.1:-91735167 MS.gene014301:CDS
TCAGAACCATCATCAATGCG+AGG 0.698974 3.1:+91735947 None:intergenic
GAAGCTAAGAGAATCTGCAG+TGG 0.699868 3.1:-91736632 MS.gene014301:CDS
GGAGGCGGAGTATTAGTCGG+AGG 0.718816 3.1:+91737091 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATATTTTCATGATT+TGG + chr3.1:91735517-91735536 None:intergenic 10.0%
!!! ATAATTTGAAATGTGAATTT+CGG - chr3.1:91735689-91735708 MS.gene014301:intron 15.0%
!! AATCAACTAGAATTAATTAC+CGG - chr3.1:91736531-91736550 MS.gene014301:intron 20.0%
!! AATCTGTCATATATCTTAAT+AGG - chr3.1:91736640-91736659 MS.gene014301:CDS 20.0%
!! ATCTGTCATATATCTTAATA+GGG - chr3.1:91736641-91736660 MS.gene014301:CDS 20.0%
!! ATTTGTGTGTTATAATGTTT+GGG - chr3.1:91736197-91736216 MS.gene014301:CDS 20.0%
!! CCAATCATATATGTATTTAA+TGG + chr3.1:91735606-91735625 None:intergenic 20.0%
!! CCATTAAATACATATATGAT+TGG - chr3.1:91735603-91735622 MS.gene014301:intron 20.0%
!! GAAATTCACATTTCAAATTA+TGG + chr3.1:91735690-91735709 None:intergenic 20.0%
!! TAAACAATTCAAAGAAAACA+AGG + chr3.1:91736163-91736182 None:intergenic 20.0%
!! TAATAATCTTTGCTGAATAT+TGG - chr3.1:91736962-91736981 MS.gene014301:CDS 20.0%
!! TTAAAATTAGTTGTATGACA+TGG - chr3.1:91735532-91735551 MS.gene014301:intron 20.0%
!! TTATTTGTTCAAATTATTGC+AGG - chr3.1:91736424-91736443 MS.gene014301:intron 20.0%
!!! AAAATATTTTCATGATTTGG+CGG + chr3.1:91735514-91735533 None:intergenic 20.0%
! AAATCATTTGTCATTCAACA+AGG + chr3.1:91736378-91736397 None:intergenic 25.0%
! AATCATTTGTCATTCAACAA+GGG + chr3.1:91736377-91736396 None:intergenic 25.0%
! AGAACAATTGGAATTTGATT+CGG + chr3.1:91736273-91736292 None:intergenic 25.0%
! CATTTGTGTGTTATAATGTT+TGG - chr3.1:91736196-91736215 MS.gene014301:CDS 25.0%
! TCTATAGATGAAAAATATCC+AGG - chr3.1:91736993-91737012 MS.gene014301:CDS 25.0%
! TTGATTACATGTAGCATTAA+AGG - chr3.1:91736238-91736257 MS.gene014301:intron 25.0%
! TTTGTGTGTTATAATGTTTG+GGG - chr3.1:91736198-91736217 MS.gene014301:CDS 25.0%
!!! CGATTTAGTGTTTTATTTGA+TGG - chr3.1:91736921-91736940 MS.gene014301:CDS 25.0%
!!! TCTAGTTGATTTGTAAACAT+TGG + chr3.1:91736522-91736541 None:intergenic 25.0%
AAAATCAAAGACTCTTCGAA+TGG + chr3.1:91735159-91735178 None:intergenic 30.0%
AATCCGAGTTTAAAGATTTC+CGG + chr3.1:91736726-91736745 None:intergenic 30.0%
ATAAAAGATTGAGCTGATCA+AGG + chr3.1:91737101-91737120 None:intergenic 30.0%
ATTCGTGGAAATTATCGAAT+TGG - chr3.1:91735747-91735766 MS.gene014301:intron 30.0%
CTGTCTTAATTCTTAGTAGT+TGG - chr3.1:91736300-91736319 MS.gene014301:intron 30.0%
CTTGAAGCTATTACGAATTT+CGG - chr3.1:91735852-91735871 MS.gene014301:CDS 30.0%
GAATCAAATTCCAATTGTTC+TGG - chr3.1:91736272-91736291 MS.gene014301:intron 30.0%
TAATACAGAATTCAAGAGAG+TGG - chr3.1:91735776-91735795 MS.gene014301:intron 30.0%
TAATAGGGTTTATCTCGAAA+TGG - chr3.1:91736656-91736675 MS.gene014301:CDS 30.0%
TGTAGTATTTGTAAACCCTA+GGG + chr3.1:91735046-91735065 None:intergenic 30.0%
! GTACACTTCATTAGTTTGAA+TGG - chr3.1:91736698-91736717 MS.gene014301:CDS 30.0%
! TCGGATTTTCTCATTAGAAA+TGG - chr3.1:91736739-91736758 MS.gene014301:CDS 30.0%
! TTCATTAGTTTGAATGGTTC+CGG - chr3.1:91736704-91736723 MS.gene014301:CDS 30.0%
! TTTTCAGATTCAATCCTAAC+AGG - chr3.1:91735084-91735103 MS.gene014301:CDS 30.0%
!! AAAAAATGAATGGACTGAGA+AGG - chr3.1:91735815-91735834 MS.gene014301:intron 30.0%
!! CTTTGATTTTCTTGAAGCTT+GGG - chr3.1:91735169-91735188 MS.gene014301:CDS 30.0%
!! TCTTTGATTTTCTTGAAGCT+TGG - chr3.1:91735168-91735187 MS.gene014301:CDS 30.0%
!! TTTGATTTTCTTGAAGCTTG+GGG - chr3.1:91735170-91735189 MS.gene014301:CDS 30.0%
AAATCCTATAATCTTAGCCC+AGG + chr3.1:91736602-91736621 None:intergenic 35.0%
AATGCTTCAGATTCTATCCA+AGG - chr3.1:91736800-91736819 MS.gene014301:CDS 35.0%
ATAACCTGGGCTAAGATTAT+AGG - chr3.1:91736595-91736614 MS.gene014301:CDS 35.0%
ATTCTCTTAGCTTCTTTGAC+AGG + chr3.1:91735305-91735324 None:intergenic 35.0%
CAAAATTGATAAGCTTGTCC+TGG + chr3.1:91737014-91737033 None:intergenic 35.0%
CTGTAGTATTTGTAAACCCT+AGG + chr3.1:91735047-91735066 None:intergenic 35.0%
CTTTGCTGAATATTGGATGT+TGG - chr3.1:91736969-91736988 MS.gene014301:CDS 35.0%
GAATCTGAAAAACTTGACGA+TGG + chr3.1:91735075-91735094 None:intergenic 35.0%
GAGAAGGCAATCATGTAAAA+AGG - chr3.1:91737148-91737167 MS.gene014301:CDS 35.0%
GTGAGAATGACATATAACCT+GGG - chr3.1:91736582-91736601 MS.gene014301:intron 35.0%
GTGAGGAGACAAAAAATGAA+TGG - chr3.1:91735805-91735824 MS.gene014301:intron 35.0%
GTTCCGGAAATCTTTAAACT+CGG - chr3.1:91736720-91736739 MS.gene014301:CDS 35.0%
TCTTTATCTTCCCATTTGAG+AGG + chr3.1:91735233-91735252 None:intergenic 35.0%
TGCAAATTTACAGCTTGAGA+AGG - chr3.1:91736835-91736854 MS.gene014301:CDS 35.0%
TTACGAATTTCGGTGATGAT+TGG - chr3.1:91735862-91735881 MS.gene014301:CDS 35.0%
! GGACAAGCTTATCAATTTTG+AGG - chr3.1:91737014-91737033 MS.gene014301:CDS 35.0%
! GTGAATGTGATTTTCCTGTT+AGG + chr3.1:91735101-91735120 None:intergenic 35.0%
! TTTTACATGATTGCCTTCTC+CGG + chr3.1:91737148-91737167 None:intergenic 35.0%
!!! CGTTTTTTAGAGCTTCCTTT+TGG - chr3.1:91735936-91735955 MS.gene014301:CDS 35.0%
!!! TGGCGGAATACAAAGTTTTT+TGG + chr3.1:91735497-91735516 None:intergenic 35.0%
AAAAGAACCTGAGCCATGAT+AGG + chr3.1:91736125-91736144 None:intergenic 40.0%
AACTAAACTGACCTTCTCAC+AGG + chr3.1:91735369-91735388 None:intergenic 40.0%
ATAATATGACGTTGTGTGCG+AGG - chr3.1:91735718-91735737 MS.gene014301:intron 40.0%
ATGTATTCCTCGGAAATGAC+CGG + chr3.1:91736553-91736572 None:intergenic 40.0%
ATTTCGGTGATGATTGGAAG+AGG - chr3.1:91735868-91735887 MS.gene014301:CDS 40.0%
CGTGGAAAAAGCAATTTCTG+AGG - chr3.1:91736868-91736887 MS.gene014301:CDS 40.0%
CTGCAAAAATCTCTGTGTCA+TGG - chr3.1:91735334-91735353 MS.gene014301:intron 40.0%
GAAGTGTACACGATGAACAT+TGG + chr3.1:91736687-91736706 None:intergenic 40.0%
GATTCACATTCAGCATCAAC+GGG + chr3.1:91736035-91736054 None:intergenic 40.0%
GCTCAGTAAACCTCTCAAAT+GGG - chr3.1:91735220-91735239 MS.gene014301:intron 40.0%
GGATTCACATTCAGCATCAA+CGG + chr3.1:91736036-91736055 None:intergenic 40.0%
GGTGAGAATGACATATAACC+TGG - chr3.1:91736581-91736600 MS.gene014301:intron 40.0%
TGAGGATTTAGACGTGCTAA+TGG - chr3.1:91737032-91737051 MS.gene014301:CDS 40.0%
TGCAGAAACTGATCACCAAA+AGG + chr3.1:91735954-91735973 None:intergenic 40.0%
TGGAAGATTCGGGAATGTTA+CGG + chr3.1:91735019-91735038 None:intergenic 40.0%
TGTATGACATGGCAGATTGA+TGG - chr3.1:91735543-91735562 MS.gene014301:intron 40.0%
TTAATGACTGTGCTCTGACA+CGG - chr3.1:91736326-91736345 MS.gene014301:intron 40.0%
TTAATTACCGGTCATTTCCG+AGG - chr3.1:91736543-91736562 MS.gene014301:intron 40.0%
TTGCACGCAATAAAGATCCT+TGG + chr3.1:91736820-91736839 None:intergenic 40.0%
TTTATCCGACGCAACAGTTT+CGG + chr3.1:91736057-91736076 None:intergenic 40.0%
TTTCGGTGATGATTGGAAGA+GGG - chr3.1:91735869-91735888 MS.gene014301:CDS 40.0%
TTTGTAAACCCTAGGGTTCT+TGG + chr3.1:91735039-91735058 None:intergenic 40.0%
TTTGTCATTCAACAAGGGAC+TGG + chr3.1:91736372-91736391 None:intergenic 40.0%
! ATCTGAAGCATTACCACCAT+TGG + chr3.1:91736792-91736811 None:intergenic 40.0%
! GCAGATTGATGGTTTCTTAG+CGG - chr3.1:91735554-91735573 MS.gene014301:intron 40.0%
! GCTAGGGACTAGTATTAAGT+TGG + chr3.1:91734952-91734971 None:intergenic 40.0%
! TTGCTCATCAAGTTGTTGGT+AGG - chr3.1:91735892-91735911 MS.gene014301:CDS 40.0%
!! TTCTGAGGTTACAGAAGTTC+AGG - chr3.1:91736883-91736902 MS.gene014301:CDS 40.0%
!!! AGGTTTTGGGTTCTGGTAAT+GGG + chr3.1:91734920-91734939 None:intergenic 40.0%
!!! TCATGGCTCAGGTTCTTTTT+TGG - chr3.1:91736126-91736145 MS.gene014301:CDS 40.0%
AAAACATCTGCACCAACGAC+CGG - chr3.1:91737126-91737145 MS.gene014301:CDS 45.0%
AATGTGTCTCACACCTCTTG+CGG - chr3.1:91736088-91736107 MS.gene014301:CDS 45.0%
ACGAGCAACACATTCCTTGT+CGG + chr3.1:91735919-91735938 None:intergenic 45.0%
ACGGATTTCGCATTCGTGAA+TGG + chr3.1:91735000-91735019 None:intergenic 45.0%
AGAACCATCTTGAGTGGCTA+GGG + chr3.1:91734968-91734987 None:intergenic 45.0%
CAAGAGAGTGGAGATAAGTG+AGG - chr3.1:91735788-91735807 MS.gene014301:intron 45.0%
CCACTCAAGATGGTTCTCAT+GGG - chr3.1:91734971-91734990 MS.gene014301:intron 45.0%
CCTAGGGTTCTTGGAAGATT+CGG + chr3.1:91735030-91735049 None:intergenic 45.0%
CCTTGCTGCAATGTATTCCT+CGG + chr3.1:91736563-91736582 None:intergenic 45.0%
CGAATCTTCCAAGAACCCTA+GGG - chr3.1:91735028-91735047 MS.gene014301:intron 45.0%
CGCTCAGTAAACCTCTCAAA+TGG - chr3.1:91735219-91735238 MS.gene014301:intron 45.0%
CTAGGGTTCTTGGAAGATTC+GGG + chr3.1:91735029-91735048 None:intergenic 45.0%
CTTTCCTTTCTGCTTTGGCA+GGG - chr3.1:91736450-91736469 MS.gene014301:intron 45.0%
GAAGCTAAGAGAATCTGCAG+TGG - chr3.1:91735311-91735330 MS.gene014301:intron 45.0%
GACAGCGATTCCAGAACAAT+TGG + chr3.1:91736285-91736304 None:intergenic 45.0%
GATGTTCGCAAAACCCTAGT+CGG - chr3.1:91735122-91735141 MS.gene014301:CDS 45.0%
GGATGCTAGCAATCCTATCA+TGG - chr3.1:91736109-91736128 MS.gene014301:CDS 45.0%
GGTTTACTGAGCGAAGAAGA+AGG + chr3.1:91735212-91735231 None:intergenic 45.0%
TAGCAATCCTATCATGGCTC+AGG - chr3.1:91736115-91736134 MS.gene014301:CDS 45.0%
TCAGAACCATCATCAATGCG+AGG + chr3.1:91735999-91736018 None:intergenic 45.0%
TGAATCCGAAACTGTTGCGT+CGG - chr3.1:91736049-91736068 MS.gene014301:CDS 45.0%
TGAGAAGGAAGAATCAGACG+TGG - chr3.1:91736850-91736869 MS.gene014301:CDS 45.0%
! AGGGTTGCTCATCAAGTTGT+TGG - chr3.1:91735888-91735907 MS.gene014301:CDS 45.0%
! GACTAGGGTTTTGCGAACAT+CGG + chr3.1:91735123-91735142 None:intergenic 45.0%
! TCTTTGTTTGCTCCAACTGC+TGG + chr3.1:91737068-91737087 None:intergenic 45.0%
!! TATTAAGTTGGCGTCGCTAG+AGG + chr3.1:91734940-91734959 None:intergenic 45.0%
!! TGTGCGAGGTGTTTTATTCG+TGG - chr3.1:91735732-91735751 MS.gene014301:intron 45.0%
!!! GAGGTTTTGGGTTCTGGTAA+TGG + chr3.1:91734921-91734940 None:intergenic 45.0%
AAAACCCTAGTCGGTGACGT+TGG - chr3.1:91735131-91735150 MS.gene014301:CDS 50.0%
ATCAATGCGAGGAGCAGACT+CGG + chr3.1:91735988-91736007 None:intergenic 50.0%
CCCATGAGAACCATCTTGAG+TGG + chr3.1:91734974-91734993 None:intergenic 50.0%
CCGAATCTTCCAAGAACCCT+AGG - chr3.1:91735027-91735046 MS.gene014301:intron 50.0%
CCGAGGAATACATTGCAGCA+AGG - chr3.1:91736560-91736579 MS.gene014301:intron 50.0%
GAGAACCATCTTGAGTGGCT+AGG + chr3.1:91734969-91734988 None:intergenic 50.0%
GATGCTGCTGTTGCATCCAA+TGG - chr3.1:91736773-91736792 MS.gene014301:CDS 50.0%
GCCACTCAAGATGGTTCTCA+TGG - chr3.1:91734970-91734989 MS.gene014301:intron 50.0%
GCTTTCCTTTCTGCTTTGGC+AGG - chr3.1:91736449-91736468 MS.gene014301:intron 50.0%
GGATAAAGAACGCCAGCAGT+TGG - chr3.1:91737053-91737072 MS.gene014301:CDS 50.0%
TAGTCCCTAGCCACTCAAGA+TGG - chr3.1:91734961-91734980 MS.gene014301:intron 50.0%
TCACATTCAGCATCAACGGG+AGG + chr3.1:91736032-91736051 None:intergenic 50.0%
TTAGCTTCTTTGACAGGCGC+CGG + chr3.1:91735299-91735318 None:intergenic 50.0%
TTCCGCAGAATCTCCTTCTC+CGG - chr3.1:91735277-91735296 MS.gene014301:intron 50.0%
! AGTTGTTGGTAGGACCGACA+AGG - chr3.1:91735902-91735921 MS.gene014301:CDS 50.0%
! GGAGTATTAGTCGGAGGTTG+AGG + chr3.1:91734849-91734868 None:intergenic 50.0%
! GGCTGCTTTCCTTTCTGCTT+TGG - chr3.1:91736445-91736464 MS.gene014301:intron 50.0%
! TCTGCTCCTCGCATTGATGA+TGG - chr3.1:91735990-91736009 MS.gene014301:CDS 50.0%
! TTGGCGTCGCTAGAGGTTTT+GGG + chr3.1:91734933-91734952 None:intergenic 50.0%
!! GGTTCTGGTAATGGGACTTC+AGG + chr3.1:91734912-91734931 None:intergenic 50.0%
!!! TCGCTAGAGGTTTTGGGTTC+TGG + chr3.1:91734927-91734946 None:intergenic 50.0%
AGGCACGACGGTTCTGTTTG+GGG + chr3.1:91734805-91734824 None:intergenic 55.0%
ATTCGATGCTGCGTCGGGTT+TGG + chr3.1:91735258-91735277 None:intergenic 55.0%
CCTTTCTGCTTTGGCAGGGA+CGG - chr3.1:91736454-91736473 MS.gene014301:intron 55.0%
GAGGCACGACGGTTCTGTTT+GGG + chr3.1:91734806-91734825 None:intergenic 55.0%
GCTGCTGTTGCATCCAATGG+TGG - chr3.1:91736776-91736795 MS.gene014301:CDS 55.0%
GGATTGCTAGCATCCGCAAG+AGG + chr3.1:91736104-91736123 None:intergenic 55.0%
TGATTGCCTTCTCCGGTCGT+TGG + chr3.1:91737141-91737160 None:intergenic 55.0%
TGCGGAATTCGATGCTGCGT+CGG + chr3.1:91735264-91735283 None:intergenic 55.0%
! AGTCGGAGGTTGAGGTGTTC+CGG + chr3.1:91734841-91734860 None:intergenic 55.0%
! GACGGTTCTGTTTGGGGTTG+AGG + chr3.1:91734799-91734818 None:intergenic 55.0%
! GAGGGAGGCGGAGTATTAGT+CGG + chr3.1:91734858-91734877 None:intergenic 55.0%
! GGAACCAACGTCACCGACTA+GGG + chr3.1:91735138-91735157 None:intergenic 55.0%
! GGCTTGCTTTGCCTGTGAGA+AGG - chr3.1:91735355-91735374 MS.gene014301:intron 55.0%
! GTTGGCGTCGCTAGAGGTTT+TGG + chr3.1:91734934-91734953 None:intergenic 55.0%
! TGGAACCAACGTCACCGACT+AGG + chr3.1:91735139-91735158 None:intergenic 55.0%
CCGTCCCTGCCAAAGCAGAA+AGG + chr3.1:91736457-91736476 None:intergenic 60.0%
CGCCGGAGAAGGAGATTCTG+CGG + chr3.1:91735282-91735301 None:intergenic 60.0%
GACGGAGGTTGCACAAGCTG+CGG - chr3.1:91736472-91736491 MS.gene014301:intron 60.0%
GCGGAATTCGATGCTGCGTC+GGG + chr3.1:91735263-91735282 None:intergenic 60.0%
TCTGCACCAACGACCGGAGA+AGG - chr3.1:91737132-91737151 MS.gene014301:CDS 60.0%
TTCTGCTTTGGCAGGGACGG+AGG - chr3.1:91736457-91736476 MS.gene014301:intron 60.0%
! ACTTCAGGTTTCGCCACCGG+AGG + chr3.1:91734897-91734916 None:intergenic 60.0%
! AGGTTGAGGTGTTCCGGTGG+CGG + chr3.1:91734835-91734854 None:intergenic 60.0%
! GGAGGCACGACGGTTCTGTT+TGG + chr3.1:91734807-91734826 None:intergenic 60.0%
! GGAGGCGGAGTATTAGTCGG+AGG + chr3.1:91734855-91734874 None:intergenic 60.0%
! GGGACTTCAGGTTTCGCCAC+CGG + chr3.1:91734900-91734919 None:intergenic 60.0%
!! TCTTTGACAGGCGCCGGAGA+AGG + chr3.1:91735293-91735312 None:intergenic 60.0%
TCAGGTTTCGCCACCGGAGG+CGG + chr3.1:91734894-91734913 None:intergenic 65.0%
! CGGAGGTTGAGGTGTTCCGG+TGG + chr3.1:91734838-91734857 None:intergenic 65.0%
!! GGTGTTCCGGTGGCGGAAGA+CGG + chr3.1:91734828-91734847 None:intergenic 65.0%
GTGCCTCCGTCTTCCGCCAC+CGG - chr3.1:91734819-91734838 MS.gene014301:CDS 70.0%
! GGCGGAAGACGGAGGCACGA+CGG + chr3.1:91734817-91734836 None:intergenic 70.0%
!! GGTGGTGGGTTCGAGGGAGG+CGG + chr3.1:91734870-91734889 None:intergenic 70.0%
!! GTTCCGGTGGCGGAAGACGG+AGG + chr3.1:91734825-91734844 None:intergenic 70.0%
GAACCCACCACCGCCGCCTC+CGG - chr3.1:91734878-91734897 MS.gene014301:CDS 75.0%
GGTTTCGCCACCGGAGGCGG+CGG + chr3.1:91734891-91734910 None:intergenic 75.0%
!! AGGCGGCGGTGGTGGGTTCG+AGG + chr3.1:91734877-91734896 None:intergenic 75.0%
!! GGCGGCGGTGGTGGGTTCGA+GGG + chr3.1:91734876-91734895 None:intergenic 75.0%
!! GGCGGTGGTGGGTTCGAGGG+AGG + chr3.1:91734873-91734892 None:intergenic 75.0%
! CCACCGGAGGCGGCGGTGGT+GGG + chr3.1:91734884-91734903 None:intergenic 80.0%
! TTCGCCACCGGAGGCGGCGG+TGG + chr3.1:91734888-91734907 None:intergenic 80.0%
! CCCACCACCGCCGCCTCCGG+TGG - chr3.1:91734881-91734900 MS.gene014301:CDS 85.0%
! GCCACCGGAGGCGGCGGTGG+TGG + chr3.1:91734885-91734904 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 91734789 91737176 91734789 ID=MS.gene014301
chr3.1 mRNA 91734789 91737176 91734789 ID=MS.gene014301.t1;Parent=MS.gene014301
chr3.1 exon 91736589 91737176 91736589 ID=MS.gene014301.t1.exon1;Parent=MS.gene014301.t1
chr3.1 CDS 91736589 91737176 91736589 ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1
chr3.1 exon 91735829 91736248 91735829 ID=MS.gene014301.t1.exon2;Parent=MS.gene014301.t1
chr3.1 CDS 91735829 91736248 91735829 ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1
chr3.1 exon 91735384 91735519 91735384 ID=MS.gene014301.t1.exon3;Parent=MS.gene014301.t1
chr3.1 CDS 91735384 91735519 91735384 ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1
chr3.1 exon 91735061 91735191 91735061 ID=MS.gene014301.t1.exon4;Parent=MS.gene014301.t1
chr3.1 CDS 91735061 91735191 91735061 ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1
chr3.1 exon 91734789 91734965 91734789 ID=MS.gene014301.t1.exon5;Parent=MS.gene014301.t1
chr3.1 CDS 91734789 91734965 91734789 ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1
Gene Sequence

>MS.gene014301

ATGGCGACCTCAACCCCAAACAGAACCGTCGTGCCTCCGTCTTCCGCCACCGGAACACCTCAACCTCCGACTAATACTCCGCCTCCCTCGAACCCACCACCGCCGCCTCCGGTGGCGAAACCTGAAGTCCCATTACCAGAACCCAAAACCTCTAGCGACGCCAACTTAATACTAGTCCCTAGCCACTCAAGATGGTTCTCATGGGATTCCATTCACGAATGCGAAATCCGTAACATTCCCGAATCTTCCAAGAACCCTAGGGTTTACAAATACTACAGAAACTCCATCGTCAAGTTTTTCAGATTCAATCCTAACAGGAAAATCACATTCACCGATGTTCGCAAAACCCTAGTCGGTGACGTTGGTTCCATTCGAAGAGTCTTTGATTTTCTTGAAGCTTGGGGTTTAATCAATTATCATCCTTCTTCTTCGCTCAGTAAACCTCTCAAATGGGAAGATAAAGACACCAAACCCGACGCAGCATCGAATTCCGCAGAATCTCCTTCTCCGGCGCCTGTCAAAGAAGCTAAGAGAATCTGCAGTGGCTGCAAAAATCTCTGTGTCATGGCTTGCTTTGCCTGTGAGAAGGTCAGTTTAGTTAAAGATTTTTTACACTTTCAATCAATTGTGATTCTCGTATTTTTTTAAGAGAAAACAGAAGATGCATTGATGATGTAAAATAGTAAAATAATTTTACACTGACATCCAAAAAACTTTGTATTCCGCCAAATCATGAAAATATTTTAAAATTAGTTGTATGACATGGCAGATTGATGGTTTCTTAGCGGATGACAGTGTAAAACTCAATTTATCACCATTAAATACATATATGATTGGCTGTGATTTTTTTGACTGTGTAAAACTTTTATGCTGAGAGTGTATTGAAATTAAACTAATTCCATAATTTGAAATGTGAATTTCGGTGCAGAATAATATGACGTTGTGTGCGAGGTGTTTTATTCGTGGAAATTATCGAATTGGTATGAGTAATACAGAATTCAAGAGAGTGGAGATAAGTGAGGAGACAAAAAATGAATGGACTGAGAAGGAAACACTGAATCTTCTTGAAGCTATTACGAATTTCGGTGATGATTGGAAGAGGGTTGCTCATCAAGTTGTTGGTAGGACCGACAAGGAATGTGTTGCTCGTTTTTTAGAGCTTCCTTTTGGTGATCAGTTTCTGCATTATCAACACTCCGAGTCTGCTCCTCGCATTGATGATGGTTCTGATCAGTTGAAGCCTCCCGTTGATGCTGAATGTGAATCCGAAACTGTTGCGTCGGATAAATCTAGTAAGAGAATGTGTCTCACACCTCTTGCGGATGCTAGCAATCCTATCATGGCTCAGGTTCTTTTTTGGCTTAAAATTATCCTTGTTTTCTTTGAATTGTTTATTGTTATTGATTACATTTGTGTGTTATAATGTTTGGGGAAAAAATGAAACTTCATTTGATTACATGTAGCATTAAAGGAACATGATACCGAATCAAATTCCAATTGTTCTGGAATCGCTGTCTTAATTCTTAGTAGTTGGTTGTTAATGACTGTGCTCTGACACGGTCTTTTGAAATTGATTGTAGCCAGTCCCTTGTTGAATGACAAATGATTTCTTTCAAGTTCTTGTGTCTTAAAAATTTATTTGTTCAAATTATTGCAGGCTGCTTTCCTTTCTGCTTTGGCAGGGACGGAGGTTGCACAAGCTGCGGCTCAAGCTGCTCTGACAAGTTTGTCCAATGTTTACAAATCAACTAGAATTAATTACCGGTCATTTCCGAGGAATACATTGCAGCAAGGTGAGAATGACATATAACCTGGGCTAAGATTATAGGATTTGAATGAATTTAAGCTGTCAATCTGTCATATATCTTAATAGGGTTTATCTCGAAATGGATGAACCAATGTTCATCGTGTACACTTCATTAGTTTGAATGGTTCCGGAAATCTTTAAACTCGGATTTTCTCATTAGAAATGGCGTTTCATGCAGATGCTGCTGTTGCATCCAATGGTGGTAATGCTTCAGATTCTATCCAAGGATCTTTATTGCGTGCAAATTTACAGCTTGAGAAGGAAGAATCAGACGTGGAAAAAGCAATTTCTGAGGTTACAGAAGTTCAGGTCTGTCATGTGTTAGCGATTTAGTGTTTTATTTGATGGTGTTTGTACTTGTTAGTTTAATAATCTTTGCTGAATATTGGATGTTGGCTCTATAGATGAAAAATATCCAGGACAAGCTTATCAATTTTGAGGATTTAGACGTGCTAATGGATAAAGAACGCCAGCAGTTGGAGCAAACAAAGAGTTTGTTTTTCCTTGATCAGCTCAATCTTTTATTTCGTAAAACATCTGCACCAACGACCGGAGAAGGCAATCATGTAAAAAGGAATTGA

Protein sequence

>MS.gene014301.t1

MATSTPNRTVVPPSSATGTPQPPTNTPPPSNPPPPPPVAKPEVPLPEPKTSSDANLILVPSHSRWFSWDSIHECEIRNIPESSKNPRVYKYYRNSIVKFFRFNPNRKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYHPSSSLSKPLKWEDKDTKPDAASNSAESPSPAPVKEAKRICSGCKNLCVMACFACEKNNMTLCARCFIRGNYRIGMSNTEFKRVEISEETKNEWTEKETLNLLEAITNFGDDWKRVAHQVVGRTDKECVARFLELPFGDQFLHYQHSESAPRIDDGSDQLKPPVDAECESETVASDKSSKRMCLTPLADASNPIMAQAAFLSALAGTEVAQAAAQAALTSLSNVYKSTRINYRSFPRNTLQQDAAVASNGGNASDSIQGSLLRANLQLEKEESDVEKAISEVTEVQMKNIQDKLINFEDLDVLMDKERQQLEQTKSLFFLDQLNLLFRKTSAPTTGEGNHVKRN