Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014301.t1 | XP_003603876.1 | 96.9 | 483 | 15 | 0 | 1 | 483 | 1 | 483 | 2.20E-243 | 851.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014301.t1 | Q84JG2 | 52.0 | 435 | 187 | 8 | 50 | 474 | 41 | 463 | 1.2e-112 | 408.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014301.t1 | G7J6G8 | 96.9 | 483 | 15 | 0 | 1 | 483 | 1 | 483 | 1.6e-243 | 851.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014301.t1 | MTR_3g116120 | 97.930 | 483 | 10 | 0 | 1 | 483 | 1 | 483 | 0.0 | 974 |
MS.gene014301.t1 | MTR_5g085170 | 81.781 | 483 | 38 | 3 | 1 | 483 | 1 | 433 | 0.0 | 765 |
MS.gene014301.t1 | MTR_6g053260 | 52.807 | 481 | 79 | 11 | 1 | 480 | 1 | 334 | 2.66e-128 | 389 |
MS.gene014301.t1 | MTR_3g099000 | 27.205 | 533 | 264 | 12 | 47 | 469 | 6 | 524 | 2.27e-53 | 188 |
MS.gene014301.t1 | MTR_3g088480 | 25.388 | 516 | 282 | 18 | 56 | 474 | 170 | 679 | 7.21e-33 | 133 |
MS.gene014301.t1 | MTR_4g069830 | 29.643 | 280 | 148 | 6 | 51 | 281 | 133 | 412 | 1.77e-28 | 120 |
MS.gene014301.t1 | MTR_4g069830 | 29.643 | 280 | 148 | 6 | 51 | 281 | 133 | 412 | 1.84e-28 | 120 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014301.t1 | AT2G33610 | 51.945 | 437 | 188 | 8 | 48 | 474 | 39 | 463 | 3.65e-146 | 426 |
MS.gene014301.t1 | AT2G47620 | 27.846 | 492 | 274 | 11 | 51 | 465 | 7 | 494 | 2.92e-38 | 146 |
MS.gene014301.t1 | AT1G21700 | 24.423 | 520 | 297 | 17 | 35 | 472 | 158 | 663 | 2.85e-37 | 146 |
MS.gene014301.t1 | AT2G47620 | 31.419 | 296 | 153 | 6 | 51 | 300 | 7 | 298 | 1.14e-33 | 131 |
MS.gene014301.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 3.19e-25 | 110 |
MS.gene014301.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 3.46e-25 | 110 |
MS.gene014301.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 3.46e-25 | 110 |
MS.gene014301.t1 | AT4G34430 | 30.686 | 277 | 146 | 7 | 51 | 281 | 139 | 415 | 3.53e-25 | 110 |
Find 122 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGGCGTCGCTAGAGGTTT+TGG | 0.216425 | 3.1:+91737012 | None:intergenic |
CTTGAAGCTATTACGAATTT+CGG | 0.268562 | 3.1:-91736091 | MS.gene014301:CDS |
GAGGCACGACGGTTCTGTTT+GGG | 0.304033 | 3.1:+91737140 | None:intergenic |
GGCTGCTTTCCTTTCTGCTT+TGG | 0.304195 | 3.1:-91735498 | MS.gene014301:CDS |
GGTTCTGGTAATGGGACTTC+AGG | 0.304961 | 3.1:+91737034 | None:intergenic |
TTCTGAGGTTACAGAAGTTC+AGG | 0.308719 | 3.1:-91735060 | MS.gene014301:intron |
GCCACCGGAGGCGGCGGTGG+TGG | 0.310149 | 3.1:+91737061 | None:intergenic |
TTTGTAAACCCTAGGGTTCT+TGG | 0.330782 | 3.1:+91736907 | None:intergenic |
AGGCGGCGGTGGTGGGTTCG+AGG | 0.332048 | 3.1:+91737069 | None:intergenic |
GCTTTCCTTTCTGCTTTGGC+AGG | 0.337459 | 3.1:-91735494 | MS.gene014301:CDS |
GAGAAGGCAATCATGTAAAA+AGG | 0.339330 | 3.1:-91734795 | MS.gene014301:CDS |
TTTATCCGACGCAACAGTTT+CGG | 0.342652 | 3.1:+91735889 | None:intergenic |
ATTCGTGGAAATTATCGAAT+TGG | 0.350506 | 3.1:-91736196 | MS.gene014301:CDS |
CCTAGGGTTCTTGGAAGATT+CGG | 0.357797 | 3.1:+91736916 | None:intergenic |
GGAGGCACGACGGTTCTGTT+TGG | 0.358696 | 3.1:+91737139 | None:intergenic |
CGCTCAGTAAACCTCTCAAA+TGG | 0.370402 | 3.1:-91736724 | MS.gene014301:CDS |
CTAGGGTTCTTGGAAGATTC+GGG | 0.380857 | 3.1:+91736917 | None:intergenic |
ATTCGATGCTGCGTCGGGTT+TGG | 0.382011 | 3.1:+91736688 | None:intergenic |
GACGGTTCTGTTTGGGGTTG+AGG | 0.382202 | 3.1:+91737147 | None:intergenic |
AGTCGGAGGTTGAGGTGTTC+CGG | 0.392524 | 3.1:+91737105 | None:intergenic |
TTCGCCACCGGAGGCGGCGG+TGG | 0.405270 | 3.1:+91737058 | None:intergenic |
TGAGGATTTAGACGTGCTAA+TGG | 0.416011 | 3.1:-91734911 | MS.gene014301:CDS |
TTACGAATTTCGGTGATGAT+TGG | 0.419721 | 3.1:-91736081 | MS.gene014301:CDS |
CCTTTCTGCTTTGGCAGGGA+CGG | 0.421374 | 3.1:-91735489 | MS.gene014301:CDS |
AAAAGAACCTGAGCCATGAT+AGG | 0.436935 | 3.1:+91735821 | None:intergenic |
TCTTTGTTTGCTCCAACTGC+TGG | 0.439517 | 3.1:+91734878 | None:intergenic |
CCACCGGAGGCGGCGGTGGT+GGG | 0.442186 | 3.1:+91737062 | None:intergenic |
TCAGGTTTCGCCACCGGAGG+CGG | 0.443862 | 3.1:+91737052 | None:intergenic |
ACGGATTTCGCATTCGTGAA+TGG | 0.445293 | 3.1:+91736946 | None:intergenic |
GGTGGTGGGTTCGAGGGAGG+CGG | 0.448251 | 3.1:+91737076 | None:intergenic |
GCGGAATTCGATGCTGCGTC+GGG | 0.449596 | 3.1:+91736683 | None:intergenic |
TGGAAGATTCGGGAATGTTA+CGG | 0.464080 | 3.1:+91736927 | None:intergenic |
TTGCACGCAATAAAGATCCT+TGG | 0.465240 | 3.1:+91735126 | None:intergenic |
ATTCTCTTAGCTTCTTTGAC+AGG | 0.466079 | 3.1:+91736641 | None:intergenic |
AGGGTTGCTCATCAAGTTGT+TGG | 0.467288 | 3.1:-91736055 | MS.gene014301:CDS |
GAACCCACCACCGCCGCCTC+CGG | 0.468860 | 3.1:-91737065 | MS.gene014301:CDS |
GTGCCTCCGTCTTCCGCCAC+CGG | 0.470261 | 3.1:-91737124 | MS.gene014301:CDS |
ATCTGAAGCATTACCACCAT+TGG | 0.471038 | 3.1:+91735154 | None:intergenic |
GATTCACATTCAGCATCAAC+GGG | 0.474269 | 3.1:+91735911 | None:intergenic |
AATCAACTAGAATTAATTAC+CGG | 0.474504 | 3.1:-91735412 | MS.gene014301:CDS |
TCTAGTTGATTTGTAAACAT+TGG | 0.479041 | 3.1:+91735424 | None:intergenic |
GGCGGTGGTGGGTTCGAGGG+AGG | 0.482062 | 3.1:+91737073 | None:intergenic |
CAAAATTGATAAGCTTGTCC+TGG | 0.486513 | 3.1:+91734932 | None:intergenic |
CTGTAGTATTTGTAAACCCT+AGG | 0.490342 | 3.1:+91736899 | None:intergenic |
TGGAACCAACGTCACCGACT+AGG | 0.492371 | 3.1:+91736807 | None:intergenic |
TCTGCTCCTCGCATTGATGA+TGG | 0.492996 | 3.1:-91735953 | MS.gene014301:CDS |
CCGAATCTTCCAAGAACCCT+AGG | 0.500165 | 3.1:-91736916 | MS.gene014301:CDS |
GCCACTCAAGATGGTTCTCA+TGG | 0.500382 | 3.1:-91736973 | MS.gene014301:CDS |
GGTGTTCCGGTGGCGGAAGA+CGG | 0.500983 | 3.1:+91737118 | None:intergenic |
AGGTTGAGGTGTTCCGGTGG+CGG | 0.501069 | 3.1:+91737111 | None:intergenic |
GGGACTTCAGGTTTCGCCAC+CGG | 0.504355 | 3.1:+91737046 | None:intergenic |
TGCGGAATTCGATGCTGCGT+CGG | 0.506487 | 3.1:+91736682 | None:intergenic |
GGTTTCGCCACCGGAGGCGG+CGG | 0.509368 | 3.1:+91737055 | None:intergenic |
TCTTTGACAGGCGCCGGAGA+AGG | 0.514796 | 3.1:+91736653 | None:intergenic |
CTTTCCTTTCTGCTTTGGCA+GGG | 0.515547 | 3.1:-91735493 | MS.gene014301:CDS |
TGATTGCCTTCTCCGGTCGT+TGG | 0.518632 | 3.1:+91734805 | None:intergenic |
GATGCTGCTGTTGCATCCAA+TGG | 0.519252 | 3.1:-91735170 | MS.gene014301:CDS |
GGCTTGCTTTGCCTGTGAGA+AGG | 0.520661 | 3.1:-91736588 | MS.gene014301:intron |
ATAAAAGATTGAGCTGATCA+AGG | 0.521081 | 3.1:+91734845 | None:intergenic |
ACGAGCAACACATTCCTTGT+CGG | 0.522938 | 3.1:+91736027 | None:intergenic |
GGATAAAGAACGCCAGCAGT+TGG | 0.527567 | 3.1:-91734890 | MS.gene014301:CDS |
ATCAATGCGAGGAGCAGACT+CGG | 0.528293 | 3.1:+91735958 | None:intergenic |
GGATGCTAGCAATCCTATCA+TGG | 0.529881 | 3.1:-91735834 | MS.gene014301:CDS |
TGCAGAAACTGATCACCAAA+AGG | 0.531795 | 3.1:+91735992 | None:intergenic |
AGAACCATCTTGAGTGGCTA+GGG | 0.532947 | 3.1:+91736978 | None:intergenic |
TAGCAATCCTATCATGGCTC+AGG | 0.533854 | 3.1:-91735828 | MS.gene014301:intron |
TCTTTATCTTCCCATTTGAG+AGG | 0.534057 | 3.1:+91736713 | None:intergenic |
TGTAGTATTTGTAAACCCTA+GGG | 0.534357 | 3.1:+91736900 | None:intergenic |
GGAACCAACGTCACCGACTA+GGG | 0.535194 | 3.1:+91736808 | None:intergenic |
AAAACATCTGCACCAACGAC+CGG | 0.535739 | 3.1:-91734817 | MS.gene014301:CDS |
TCTGCACCAACGACCGGAGA+AGG | 0.536832 | 3.1:-91734811 | MS.gene014301:CDS |
GGATTCACATTCAGCATCAA+CGG | 0.539105 | 3.1:+91735910 | None:intergenic |
GCTCAGTAAACCTCTCAAAT+GGG | 0.539806 | 3.1:-91736723 | MS.gene014301:CDS |
CCCACCACCGCCGCCTCCGG+TGG | 0.540370 | 3.1:-91737062 | MS.gene014301:CDS |
TTAGCTTCTTTGACAGGCGC+CGG | 0.542076 | 3.1:+91736647 | None:intergenic |
ATTTCGGTGATGATTGGAAG+AGG | 0.544103 | 3.1:-91736075 | MS.gene014301:CDS |
AACTAAACTGACCTTCTCAC+AGG | 0.545557 | 3.1:+91736577 | None:intergenic |
GCTAGGGACTAGTATTAAGT+TGG | 0.546014 | 3.1:+91736994 | None:intergenic |
GGTTTACTGAGCGAAGAAGA+AGG | 0.548651 | 3.1:+91736734 | None:intergenic |
TTCTGCTTTGGCAGGGACGG+AGG | 0.550159 | 3.1:-91735486 | MS.gene014301:CDS |
TGCAAATTTACAGCTTGAGA+AGG | 0.556628 | 3.1:-91735108 | MS.gene014301:CDS |
TTCCGCAGAATCTCCTTCTC+CGG | 0.556844 | 3.1:-91736666 | MS.gene014301:CDS |
CGAATCTTCCAAGAACCCTA+GGG | 0.558609 | 3.1:-91736915 | MS.gene014301:CDS |
GGAGTATTAGTCGGAGGTTG+AGG | 0.559490 | 3.1:+91737097 | None:intergenic |
AAAATCAAAGACTCTTCGAA+TGG | 0.560578 | 3.1:+91736787 | None:intergenic |
CCTTGCTGCAATGTATTCCT+CGG | 0.560596 | 3.1:+91735383 | None:intergenic |
ATGTATTCCTCGGAAATGAC+CGG | 0.561368 | 3.1:+91735393 | None:intergenic |
TTGCTCATCAAGTTGTTGGT+AGG | 0.563248 | 3.1:-91736051 | MS.gene014301:CDS |
CCGTCCCTGCCAAAGCAGAA+AGG | 0.564962 | 3.1:+91735489 | None:intergenic |
GGCGGCGGTGGTGGGTTCGA+GGG | 0.565038 | 3.1:+91737070 | None:intergenic |
AGGCACGACGGTTCTGTTTG+GGG | 0.565942 | 3.1:+91737141 | None:intergenic |
TATTAAGTTGGCGTCGCTAG+AGG | 0.569207 | 3.1:+91737006 | None:intergenic |
TAATACAGAATTCAAGAGAG+TGG | 0.570887 | 3.1:-91736167 | MS.gene014301:CDS |
GAGAACCATCTTGAGTGGCT+AGG | 0.580360 | 3.1:+91736977 | None:intergenic |
GACGGAGGTTGCACAAGCTG+CGG | 0.582049 | 3.1:-91735471 | MS.gene014301:CDS |
AATGCTTCAGATTCTATCCA+AGG | 0.586687 | 3.1:-91735143 | MS.gene014301:CDS |
CAAGAGAGTGGAGATAAGTG+AGG | 0.590112 | 3.1:-91736155 | MS.gene014301:CDS |
ACTTCAGGTTTCGCCACCGG+AGG | 0.593361 | 3.1:+91737049 | None:intergenic |
TAGTCCCTAGCCACTCAAGA+TGG | 0.598302 | 3.1:-91736982 | MS.gene014301:CDS |
TTAATTACCGGTCATTTCCG+AGG | 0.609744 | 3.1:-91735400 | MS.gene014301:CDS |
TTTCGGTGATGATTGGAAGA+GGG | 0.613337 | 3.1:-91736074 | MS.gene014301:CDS |
AATGTGTCTCACACCTCTTG+CGG | 0.617103 | 3.1:-91735855 | MS.gene014301:CDS |
GGATTGCTAGCATCCGCAAG+AGG | 0.621759 | 3.1:+91735842 | None:intergenic |
CCACTCAAGATGGTTCTCAT+GGG | 0.624877 | 3.1:-91736972 | MS.gene014301:CDS |
CGCCGGAGAAGGAGATTCTG+CGG | 0.634496 | 3.1:+91736664 | None:intergenic |
CCGAGGAATACATTGCAGCA+AGG | 0.638324 | 3.1:-91735383 | MS.gene014301:intron |
TGAATCCGAAACTGTTGCGT+CGG | 0.639096 | 3.1:-91735894 | MS.gene014301:CDS |
CGGAGGTTGAGGTGTTCCGG+TGG | 0.643233 | 3.1:+91737108 | None:intergenic |
CCCATGAGAACCATCTTGAG+TGG | 0.645166 | 3.1:+91736972 | None:intergenic |
GTTCCGGTGGCGGAAGACGG+AGG | 0.648161 | 3.1:+91737121 | None:intergenic |
GAGGGAGGCGGAGTATTAGT+CGG | 0.653700 | 3.1:+91737088 | None:intergenic |
AGTTGTTGGTAGGACCGACA+AGG | 0.658858 | 3.1:-91736041 | MS.gene014301:CDS |
TCACATTCAGCATCAACGGG+AGG | 0.659217 | 3.1:+91735914 | None:intergenic |
GATGTTCGCAAAACCCTAGT+CGG | 0.661918 | 3.1:-91736821 | MS.gene014301:CDS |
ATAATATGACGTTGTGTGCG+AGG | 0.667737 | 3.1:-91736225 | MS.gene014301:CDS |
TGAGAAGGAAGAATCAGACG+TGG | 0.680762 | 3.1:-91735093 | MS.gene014301:CDS |
AAAACCCTAGTCGGTGACGT+TGG | 0.681388 | 3.1:-91736812 | MS.gene014301:CDS |
GGCGGAAGACGGAGGCACGA+CGG | 0.688333 | 3.1:+91737129 | None:intergenic |
GCTGCTGTTGCATCCAATGG+TGG | 0.695124 | 3.1:-91735167 | MS.gene014301:CDS |
TCAGAACCATCATCAATGCG+AGG | 0.698974 | 3.1:+91735947 | None:intergenic |
GAAGCTAAGAGAATCTGCAG+TGG | 0.699868 | 3.1:-91736632 | MS.gene014301:CDS |
GGAGGCGGAGTATTAGTCGG+AGG | 0.718816 | 3.1:+91737091 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAAATATTTTCATGATT+TGG | + | chr3.1:91735517-91735536 | None:intergenic | 10.0% |
!!! | ATAATTTGAAATGTGAATTT+CGG | - | chr3.1:91735689-91735708 | MS.gene014301:intron | 15.0% |
!! | AATCAACTAGAATTAATTAC+CGG | - | chr3.1:91736531-91736550 | MS.gene014301:intron | 20.0% |
!! | AATCTGTCATATATCTTAAT+AGG | - | chr3.1:91736640-91736659 | MS.gene014301:CDS | 20.0% |
!! | ATCTGTCATATATCTTAATA+GGG | - | chr3.1:91736641-91736660 | MS.gene014301:CDS | 20.0% |
!! | ATTTGTGTGTTATAATGTTT+GGG | - | chr3.1:91736197-91736216 | MS.gene014301:CDS | 20.0% |
!! | CCAATCATATATGTATTTAA+TGG | + | chr3.1:91735606-91735625 | None:intergenic | 20.0% |
!! | CCATTAAATACATATATGAT+TGG | - | chr3.1:91735603-91735622 | MS.gene014301:intron | 20.0% |
!! | GAAATTCACATTTCAAATTA+TGG | + | chr3.1:91735690-91735709 | None:intergenic | 20.0% |
!! | TAAACAATTCAAAGAAAACA+AGG | + | chr3.1:91736163-91736182 | None:intergenic | 20.0% |
!! | TAATAATCTTTGCTGAATAT+TGG | - | chr3.1:91736962-91736981 | MS.gene014301:CDS | 20.0% |
!! | TTAAAATTAGTTGTATGACA+TGG | - | chr3.1:91735532-91735551 | MS.gene014301:intron | 20.0% |
!! | TTATTTGTTCAAATTATTGC+AGG | - | chr3.1:91736424-91736443 | MS.gene014301:intron | 20.0% |
!!! | AAAATATTTTCATGATTTGG+CGG | + | chr3.1:91735514-91735533 | None:intergenic | 20.0% |
! | AAATCATTTGTCATTCAACA+AGG | + | chr3.1:91736378-91736397 | None:intergenic | 25.0% |
! | AATCATTTGTCATTCAACAA+GGG | + | chr3.1:91736377-91736396 | None:intergenic | 25.0% |
! | AGAACAATTGGAATTTGATT+CGG | + | chr3.1:91736273-91736292 | None:intergenic | 25.0% |
! | CATTTGTGTGTTATAATGTT+TGG | - | chr3.1:91736196-91736215 | MS.gene014301:CDS | 25.0% |
! | TCTATAGATGAAAAATATCC+AGG | - | chr3.1:91736993-91737012 | MS.gene014301:CDS | 25.0% |
! | TTGATTACATGTAGCATTAA+AGG | - | chr3.1:91736238-91736257 | MS.gene014301:intron | 25.0% |
! | TTTGTGTGTTATAATGTTTG+GGG | - | chr3.1:91736198-91736217 | MS.gene014301:CDS | 25.0% |
!!! | CGATTTAGTGTTTTATTTGA+TGG | - | chr3.1:91736921-91736940 | MS.gene014301:CDS | 25.0% |
!!! | TCTAGTTGATTTGTAAACAT+TGG | + | chr3.1:91736522-91736541 | None:intergenic | 25.0% |
AAAATCAAAGACTCTTCGAA+TGG | + | chr3.1:91735159-91735178 | None:intergenic | 30.0% | |
AATCCGAGTTTAAAGATTTC+CGG | + | chr3.1:91736726-91736745 | None:intergenic | 30.0% | |
ATAAAAGATTGAGCTGATCA+AGG | + | chr3.1:91737101-91737120 | None:intergenic | 30.0% | |
ATTCGTGGAAATTATCGAAT+TGG | - | chr3.1:91735747-91735766 | MS.gene014301:intron | 30.0% | |
CTGTCTTAATTCTTAGTAGT+TGG | - | chr3.1:91736300-91736319 | MS.gene014301:intron | 30.0% | |
CTTGAAGCTATTACGAATTT+CGG | - | chr3.1:91735852-91735871 | MS.gene014301:CDS | 30.0% | |
GAATCAAATTCCAATTGTTC+TGG | - | chr3.1:91736272-91736291 | MS.gene014301:intron | 30.0% | |
TAATACAGAATTCAAGAGAG+TGG | - | chr3.1:91735776-91735795 | MS.gene014301:intron | 30.0% | |
TAATAGGGTTTATCTCGAAA+TGG | - | chr3.1:91736656-91736675 | MS.gene014301:CDS | 30.0% | |
TGTAGTATTTGTAAACCCTA+GGG | + | chr3.1:91735046-91735065 | None:intergenic | 30.0% | |
! | GTACACTTCATTAGTTTGAA+TGG | - | chr3.1:91736698-91736717 | MS.gene014301:CDS | 30.0% |
! | TCGGATTTTCTCATTAGAAA+TGG | - | chr3.1:91736739-91736758 | MS.gene014301:CDS | 30.0% |
! | TTCATTAGTTTGAATGGTTC+CGG | - | chr3.1:91736704-91736723 | MS.gene014301:CDS | 30.0% |
! | TTTTCAGATTCAATCCTAAC+AGG | - | chr3.1:91735084-91735103 | MS.gene014301:CDS | 30.0% |
!! | AAAAAATGAATGGACTGAGA+AGG | - | chr3.1:91735815-91735834 | MS.gene014301:intron | 30.0% |
!! | CTTTGATTTTCTTGAAGCTT+GGG | - | chr3.1:91735169-91735188 | MS.gene014301:CDS | 30.0% |
!! | TCTTTGATTTTCTTGAAGCT+TGG | - | chr3.1:91735168-91735187 | MS.gene014301:CDS | 30.0% |
!! | TTTGATTTTCTTGAAGCTTG+GGG | - | chr3.1:91735170-91735189 | MS.gene014301:CDS | 30.0% |
AAATCCTATAATCTTAGCCC+AGG | + | chr3.1:91736602-91736621 | None:intergenic | 35.0% | |
AATGCTTCAGATTCTATCCA+AGG | - | chr3.1:91736800-91736819 | MS.gene014301:CDS | 35.0% | |
ATAACCTGGGCTAAGATTAT+AGG | - | chr3.1:91736595-91736614 | MS.gene014301:CDS | 35.0% | |
ATTCTCTTAGCTTCTTTGAC+AGG | + | chr3.1:91735305-91735324 | None:intergenic | 35.0% | |
CAAAATTGATAAGCTTGTCC+TGG | + | chr3.1:91737014-91737033 | None:intergenic | 35.0% | |
CTGTAGTATTTGTAAACCCT+AGG | + | chr3.1:91735047-91735066 | None:intergenic | 35.0% | |
CTTTGCTGAATATTGGATGT+TGG | - | chr3.1:91736969-91736988 | MS.gene014301:CDS | 35.0% | |
GAATCTGAAAAACTTGACGA+TGG | + | chr3.1:91735075-91735094 | None:intergenic | 35.0% | |
GAGAAGGCAATCATGTAAAA+AGG | - | chr3.1:91737148-91737167 | MS.gene014301:CDS | 35.0% | |
GTGAGAATGACATATAACCT+GGG | - | chr3.1:91736582-91736601 | MS.gene014301:intron | 35.0% | |
GTGAGGAGACAAAAAATGAA+TGG | - | chr3.1:91735805-91735824 | MS.gene014301:intron | 35.0% | |
GTTCCGGAAATCTTTAAACT+CGG | - | chr3.1:91736720-91736739 | MS.gene014301:CDS | 35.0% | |
TCTTTATCTTCCCATTTGAG+AGG | + | chr3.1:91735233-91735252 | None:intergenic | 35.0% | |
TGCAAATTTACAGCTTGAGA+AGG | - | chr3.1:91736835-91736854 | MS.gene014301:CDS | 35.0% | |
TTACGAATTTCGGTGATGAT+TGG | - | chr3.1:91735862-91735881 | MS.gene014301:CDS | 35.0% | |
! | GGACAAGCTTATCAATTTTG+AGG | - | chr3.1:91737014-91737033 | MS.gene014301:CDS | 35.0% |
! | GTGAATGTGATTTTCCTGTT+AGG | + | chr3.1:91735101-91735120 | None:intergenic | 35.0% |
! | TTTTACATGATTGCCTTCTC+CGG | + | chr3.1:91737148-91737167 | None:intergenic | 35.0% |
!!! | CGTTTTTTAGAGCTTCCTTT+TGG | - | chr3.1:91735936-91735955 | MS.gene014301:CDS | 35.0% |
!!! | TGGCGGAATACAAAGTTTTT+TGG | + | chr3.1:91735497-91735516 | None:intergenic | 35.0% |
AAAAGAACCTGAGCCATGAT+AGG | + | chr3.1:91736125-91736144 | None:intergenic | 40.0% | |
AACTAAACTGACCTTCTCAC+AGG | + | chr3.1:91735369-91735388 | None:intergenic | 40.0% | |
ATAATATGACGTTGTGTGCG+AGG | - | chr3.1:91735718-91735737 | MS.gene014301:intron | 40.0% | |
ATGTATTCCTCGGAAATGAC+CGG | + | chr3.1:91736553-91736572 | None:intergenic | 40.0% | |
ATTTCGGTGATGATTGGAAG+AGG | - | chr3.1:91735868-91735887 | MS.gene014301:CDS | 40.0% | |
CGTGGAAAAAGCAATTTCTG+AGG | - | chr3.1:91736868-91736887 | MS.gene014301:CDS | 40.0% | |
CTGCAAAAATCTCTGTGTCA+TGG | - | chr3.1:91735334-91735353 | MS.gene014301:intron | 40.0% | |
GAAGTGTACACGATGAACAT+TGG | + | chr3.1:91736687-91736706 | None:intergenic | 40.0% | |
GATTCACATTCAGCATCAAC+GGG | + | chr3.1:91736035-91736054 | None:intergenic | 40.0% | |
GCTCAGTAAACCTCTCAAAT+GGG | - | chr3.1:91735220-91735239 | MS.gene014301:intron | 40.0% | |
GGATTCACATTCAGCATCAA+CGG | + | chr3.1:91736036-91736055 | None:intergenic | 40.0% | |
GGTGAGAATGACATATAACC+TGG | - | chr3.1:91736581-91736600 | MS.gene014301:intron | 40.0% | |
TGAGGATTTAGACGTGCTAA+TGG | - | chr3.1:91737032-91737051 | MS.gene014301:CDS | 40.0% | |
TGCAGAAACTGATCACCAAA+AGG | + | chr3.1:91735954-91735973 | None:intergenic | 40.0% | |
TGGAAGATTCGGGAATGTTA+CGG | + | chr3.1:91735019-91735038 | None:intergenic | 40.0% | |
TGTATGACATGGCAGATTGA+TGG | - | chr3.1:91735543-91735562 | MS.gene014301:intron | 40.0% | |
TTAATGACTGTGCTCTGACA+CGG | - | chr3.1:91736326-91736345 | MS.gene014301:intron | 40.0% | |
TTAATTACCGGTCATTTCCG+AGG | - | chr3.1:91736543-91736562 | MS.gene014301:intron | 40.0% | |
TTGCACGCAATAAAGATCCT+TGG | + | chr3.1:91736820-91736839 | None:intergenic | 40.0% | |
TTTATCCGACGCAACAGTTT+CGG | + | chr3.1:91736057-91736076 | None:intergenic | 40.0% | |
TTTCGGTGATGATTGGAAGA+GGG | - | chr3.1:91735869-91735888 | MS.gene014301:CDS | 40.0% | |
TTTGTAAACCCTAGGGTTCT+TGG | + | chr3.1:91735039-91735058 | None:intergenic | 40.0% | |
TTTGTCATTCAACAAGGGAC+TGG | + | chr3.1:91736372-91736391 | None:intergenic | 40.0% | |
! | ATCTGAAGCATTACCACCAT+TGG | + | chr3.1:91736792-91736811 | None:intergenic | 40.0% |
! | GCAGATTGATGGTTTCTTAG+CGG | - | chr3.1:91735554-91735573 | MS.gene014301:intron | 40.0% |
! | GCTAGGGACTAGTATTAAGT+TGG | + | chr3.1:91734952-91734971 | None:intergenic | 40.0% |
! | TTGCTCATCAAGTTGTTGGT+AGG | - | chr3.1:91735892-91735911 | MS.gene014301:CDS | 40.0% |
!! | TTCTGAGGTTACAGAAGTTC+AGG | - | chr3.1:91736883-91736902 | MS.gene014301:CDS | 40.0% |
!!! | AGGTTTTGGGTTCTGGTAAT+GGG | + | chr3.1:91734920-91734939 | None:intergenic | 40.0% |
!!! | TCATGGCTCAGGTTCTTTTT+TGG | - | chr3.1:91736126-91736145 | MS.gene014301:CDS | 40.0% |
AAAACATCTGCACCAACGAC+CGG | - | chr3.1:91737126-91737145 | MS.gene014301:CDS | 45.0% | |
AATGTGTCTCACACCTCTTG+CGG | - | chr3.1:91736088-91736107 | MS.gene014301:CDS | 45.0% | |
ACGAGCAACACATTCCTTGT+CGG | + | chr3.1:91735919-91735938 | None:intergenic | 45.0% | |
ACGGATTTCGCATTCGTGAA+TGG | + | chr3.1:91735000-91735019 | None:intergenic | 45.0% | |
AGAACCATCTTGAGTGGCTA+GGG | + | chr3.1:91734968-91734987 | None:intergenic | 45.0% | |
CAAGAGAGTGGAGATAAGTG+AGG | - | chr3.1:91735788-91735807 | MS.gene014301:intron | 45.0% | |
CCACTCAAGATGGTTCTCAT+GGG | - | chr3.1:91734971-91734990 | MS.gene014301:intron | 45.0% | |
CCTAGGGTTCTTGGAAGATT+CGG | + | chr3.1:91735030-91735049 | None:intergenic | 45.0% | |
CCTTGCTGCAATGTATTCCT+CGG | + | chr3.1:91736563-91736582 | None:intergenic | 45.0% | |
CGAATCTTCCAAGAACCCTA+GGG | - | chr3.1:91735028-91735047 | MS.gene014301:intron | 45.0% | |
CGCTCAGTAAACCTCTCAAA+TGG | - | chr3.1:91735219-91735238 | MS.gene014301:intron | 45.0% | |
CTAGGGTTCTTGGAAGATTC+GGG | + | chr3.1:91735029-91735048 | None:intergenic | 45.0% | |
CTTTCCTTTCTGCTTTGGCA+GGG | - | chr3.1:91736450-91736469 | MS.gene014301:intron | 45.0% | |
GAAGCTAAGAGAATCTGCAG+TGG | - | chr3.1:91735311-91735330 | MS.gene014301:intron | 45.0% | |
GACAGCGATTCCAGAACAAT+TGG | + | chr3.1:91736285-91736304 | None:intergenic | 45.0% | |
GATGTTCGCAAAACCCTAGT+CGG | - | chr3.1:91735122-91735141 | MS.gene014301:CDS | 45.0% | |
GGATGCTAGCAATCCTATCA+TGG | - | chr3.1:91736109-91736128 | MS.gene014301:CDS | 45.0% | |
GGTTTACTGAGCGAAGAAGA+AGG | + | chr3.1:91735212-91735231 | None:intergenic | 45.0% | |
TAGCAATCCTATCATGGCTC+AGG | - | chr3.1:91736115-91736134 | MS.gene014301:CDS | 45.0% | |
TCAGAACCATCATCAATGCG+AGG | + | chr3.1:91735999-91736018 | None:intergenic | 45.0% | |
TGAATCCGAAACTGTTGCGT+CGG | - | chr3.1:91736049-91736068 | MS.gene014301:CDS | 45.0% | |
TGAGAAGGAAGAATCAGACG+TGG | - | chr3.1:91736850-91736869 | MS.gene014301:CDS | 45.0% | |
! | AGGGTTGCTCATCAAGTTGT+TGG | - | chr3.1:91735888-91735907 | MS.gene014301:CDS | 45.0% |
! | GACTAGGGTTTTGCGAACAT+CGG | + | chr3.1:91735123-91735142 | None:intergenic | 45.0% |
! | TCTTTGTTTGCTCCAACTGC+TGG | + | chr3.1:91737068-91737087 | None:intergenic | 45.0% |
!! | TATTAAGTTGGCGTCGCTAG+AGG | + | chr3.1:91734940-91734959 | None:intergenic | 45.0% |
!! | TGTGCGAGGTGTTTTATTCG+TGG | - | chr3.1:91735732-91735751 | MS.gene014301:intron | 45.0% |
!!! | GAGGTTTTGGGTTCTGGTAA+TGG | + | chr3.1:91734921-91734940 | None:intergenic | 45.0% |
AAAACCCTAGTCGGTGACGT+TGG | - | chr3.1:91735131-91735150 | MS.gene014301:CDS | 50.0% | |
ATCAATGCGAGGAGCAGACT+CGG | + | chr3.1:91735988-91736007 | None:intergenic | 50.0% | |
CCCATGAGAACCATCTTGAG+TGG | + | chr3.1:91734974-91734993 | None:intergenic | 50.0% | |
CCGAATCTTCCAAGAACCCT+AGG | - | chr3.1:91735027-91735046 | MS.gene014301:intron | 50.0% | |
CCGAGGAATACATTGCAGCA+AGG | - | chr3.1:91736560-91736579 | MS.gene014301:intron | 50.0% | |
GAGAACCATCTTGAGTGGCT+AGG | + | chr3.1:91734969-91734988 | None:intergenic | 50.0% | |
GATGCTGCTGTTGCATCCAA+TGG | - | chr3.1:91736773-91736792 | MS.gene014301:CDS | 50.0% | |
GCCACTCAAGATGGTTCTCA+TGG | - | chr3.1:91734970-91734989 | MS.gene014301:intron | 50.0% | |
GCTTTCCTTTCTGCTTTGGC+AGG | - | chr3.1:91736449-91736468 | MS.gene014301:intron | 50.0% | |
GGATAAAGAACGCCAGCAGT+TGG | - | chr3.1:91737053-91737072 | MS.gene014301:CDS | 50.0% | |
TAGTCCCTAGCCACTCAAGA+TGG | - | chr3.1:91734961-91734980 | MS.gene014301:intron | 50.0% | |
TCACATTCAGCATCAACGGG+AGG | + | chr3.1:91736032-91736051 | None:intergenic | 50.0% | |
TTAGCTTCTTTGACAGGCGC+CGG | + | chr3.1:91735299-91735318 | None:intergenic | 50.0% | |
TTCCGCAGAATCTCCTTCTC+CGG | - | chr3.1:91735277-91735296 | MS.gene014301:intron | 50.0% | |
! | AGTTGTTGGTAGGACCGACA+AGG | - | chr3.1:91735902-91735921 | MS.gene014301:CDS | 50.0% |
! | GGAGTATTAGTCGGAGGTTG+AGG | + | chr3.1:91734849-91734868 | None:intergenic | 50.0% |
! | GGCTGCTTTCCTTTCTGCTT+TGG | - | chr3.1:91736445-91736464 | MS.gene014301:intron | 50.0% |
! | TCTGCTCCTCGCATTGATGA+TGG | - | chr3.1:91735990-91736009 | MS.gene014301:CDS | 50.0% |
! | TTGGCGTCGCTAGAGGTTTT+GGG | + | chr3.1:91734933-91734952 | None:intergenic | 50.0% |
!! | GGTTCTGGTAATGGGACTTC+AGG | + | chr3.1:91734912-91734931 | None:intergenic | 50.0% |
!!! | TCGCTAGAGGTTTTGGGTTC+TGG | + | chr3.1:91734927-91734946 | None:intergenic | 50.0% |
AGGCACGACGGTTCTGTTTG+GGG | + | chr3.1:91734805-91734824 | None:intergenic | 55.0% | |
ATTCGATGCTGCGTCGGGTT+TGG | + | chr3.1:91735258-91735277 | None:intergenic | 55.0% | |
CCTTTCTGCTTTGGCAGGGA+CGG | - | chr3.1:91736454-91736473 | MS.gene014301:intron | 55.0% | |
GAGGCACGACGGTTCTGTTT+GGG | + | chr3.1:91734806-91734825 | None:intergenic | 55.0% | |
GCTGCTGTTGCATCCAATGG+TGG | - | chr3.1:91736776-91736795 | MS.gene014301:CDS | 55.0% | |
GGATTGCTAGCATCCGCAAG+AGG | + | chr3.1:91736104-91736123 | None:intergenic | 55.0% | |
TGATTGCCTTCTCCGGTCGT+TGG | + | chr3.1:91737141-91737160 | None:intergenic | 55.0% | |
TGCGGAATTCGATGCTGCGT+CGG | + | chr3.1:91735264-91735283 | None:intergenic | 55.0% | |
! | AGTCGGAGGTTGAGGTGTTC+CGG | + | chr3.1:91734841-91734860 | None:intergenic | 55.0% |
! | GACGGTTCTGTTTGGGGTTG+AGG | + | chr3.1:91734799-91734818 | None:intergenic | 55.0% |
! | GAGGGAGGCGGAGTATTAGT+CGG | + | chr3.1:91734858-91734877 | None:intergenic | 55.0% |
! | GGAACCAACGTCACCGACTA+GGG | + | chr3.1:91735138-91735157 | None:intergenic | 55.0% |
! | GGCTTGCTTTGCCTGTGAGA+AGG | - | chr3.1:91735355-91735374 | MS.gene014301:intron | 55.0% |
! | GTTGGCGTCGCTAGAGGTTT+TGG | + | chr3.1:91734934-91734953 | None:intergenic | 55.0% |
! | TGGAACCAACGTCACCGACT+AGG | + | chr3.1:91735139-91735158 | None:intergenic | 55.0% |
CCGTCCCTGCCAAAGCAGAA+AGG | + | chr3.1:91736457-91736476 | None:intergenic | 60.0% | |
CGCCGGAGAAGGAGATTCTG+CGG | + | chr3.1:91735282-91735301 | None:intergenic | 60.0% | |
GACGGAGGTTGCACAAGCTG+CGG | - | chr3.1:91736472-91736491 | MS.gene014301:intron | 60.0% | |
GCGGAATTCGATGCTGCGTC+GGG | + | chr3.1:91735263-91735282 | None:intergenic | 60.0% | |
TCTGCACCAACGACCGGAGA+AGG | - | chr3.1:91737132-91737151 | MS.gene014301:CDS | 60.0% | |
TTCTGCTTTGGCAGGGACGG+AGG | - | chr3.1:91736457-91736476 | MS.gene014301:intron | 60.0% | |
! | ACTTCAGGTTTCGCCACCGG+AGG | + | chr3.1:91734897-91734916 | None:intergenic | 60.0% |
! | AGGTTGAGGTGTTCCGGTGG+CGG | + | chr3.1:91734835-91734854 | None:intergenic | 60.0% |
! | GGAGGCACGACGGTTCTGTT+TGG | + | chr3.1:91734807-91734826 | None:intergenic | 60.0% |
! | GGAGGCGGAGTATTAGTCGG+AGG | + | chr3.1:91734855-91734874 | None:intergenic | 60.0% |
! | GGGACTTCAGGTTTCGCCAC+CGG | + | chr3.1:91734900-91734919 | None:intergenic | 60.0% |
!! | TCTTTGACAGGCGCCGGAGA+AGG | + | chr3.1:91735293-91735312 | None:intergenic | 60.0% |
TCAGGTTTCGCCACCGGAGG+CGG | + | chr3.1:91734894-91734913 | None:intergenic | 65.0% | |
! | CGGAGGTTGAGGTGTTCCGG+TGG | + | chr3.1:91734838-91734857 | None:intergenic | 65.0% |
!! | GGTGTTCCGGTGGCGGAAGA+CGG | + | chr3.1:91734828-91734847 | None:intergenic | 65.0% |
GTGCCTCCGTCTTCCGCCAC+CGG | - | chr3.1:91734819-91734838 | MS.gene014301:CDS | 70.0% | |
! | GGCGGAAGACGGAGGCACGA+CGG | + | chr3.1:91734817-91734836 | None:intergenic | 70.0% |
!! | GGTGGTGGGTTCGAGGGAGG+CGG | + | chr3.1:91734870-91734889 | None:intergenic | 70.0% |
!! | GTTCCGGTGGCGGAAGACGG+AGG | + | chr3.1:91734825-91734844 | None:intergenic | 70.0% |
GAACCCACCACCGCCGCCTC+CGG | - | chr3.1:91734878-91734897 | MS.gene014301:CDS | 75.0% | |
GGTTTCGCCACCGGAGGCGG+CGG | + | chr3.1:91734891-91734910 | None:intergenic | 75.0% | |
!! | AGGCGGCGGTGGTGGGTTCG+AGG | + | chr3.1:91734877-91734896 | None:intergenic | 75.0% |
!! | GGCGGCGGTGGTGGGTTCGA+GGG | + | chr3.1:91734876-91734895 | None:intergenic | 75.0% |
!! | GGCGGTGGTGGGTTCGAGGG+AGG | + | chr3.1:91734873-91734892 | None:intergenic | 75.0% |
! | CCACCGGAGGCGGCGGTGGT+GGG | + | chr3.1:91734884-91734903 | None:intergenic | 80.0% |
! | TTCGCCACCGGAGGCGGCGG+TGG | + | chr3.1:91734888-91734907 | None:intergenic | 80.0% |
! | CCCACCACCGCCGCCTCCGG+TGG | - | chr3.1:91734881-91734900 | MS.gene014301:CDS | 85.0% |
! | GCCACCGGAGGCGGCGGTGG+TGG | + | chr3.1:91734885-91734904 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 91734789 | 91737176 | 91734789 | ID=MS.gene014301 |
chr3.1 | mRNA | 91734789 | 91737176 | 91734789 | ID=MS.gene014301.t1;Parent=MS.gene014301 |
chr3.1 | exon | 91736589 | 91737176 | 91736589 | ID=MS.gene014301.t1.exon1;Parent=MS.gene014301.t1 |
chr3.1 | CDS | 91736589 | 91737176 | 91736589 | ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1 |
chr3.1 | exon | 91735829 | 91736248 | 91735829 | ID=MS.gene014301.t1.exon2;Parent=MS.gene014301.t1 |
chr3.1 | CDS | 91735829 | 91736248 | 91735829 | ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1 |
chr3.1 | exon | 91735384 | 91735519 | 91735384 | ID=MS.gene014301.t1.exon3;Parent=MS.gene014301.t1 |
chr3.1 | CDS | 91735384 | 91735519 | 91735384 | ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1 |
chr3.1 | exon | 91735061 | 91735191 | 91735061 | ID=MS.gene014301.t1.exon4;Parent=MS.gene014301.t1 |
chr3.1 | CDS | 91735061 | 91735191 | 91735061 | ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1 |
chr3.1 | exon | 91734789 | 91734965 | 91734789 | ID=MS.gene014301.t1.exon5;Parent=MS.gene014301.t1 |
chr3.1 | CDS | 91734789 | 91734965 | 91734789 | ID=cds.MS.gene014301.t1;Parent=MS.gene014301.t1 |
Gene Sequence |
Protein sequence |