Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008015.t1 | XP_003600969.1 | 98.8 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 5.30E-175 | 623.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008015.t1 | Q9SIZ2 | 81.7 | 339 | 61 | 1 | 3 | 340 | 6 | 344 | 4.7e-148 | 525.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008015.t1 | G7J2B5 | 98.8 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 3.8e-175 | 623.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05792 | MS.gene008015 | PPI |
| MS.gene008015 | MS.gene63721 | PPI |
| MS.gene004357 | MS.gene008015 | PPI |
| MS.gene070896 | MS.gene008015 | PPI |
| MS.gene027802 | MS.gene008015 | PPI |
| MS.gene002676 | MS.gene008015 | PPI |
| MS.gene068593 | MS.gene008015 | PPI |
| MS.gene018560 | MS.gene008015 | PPI |
| MS.gene039110 | MS.gene008015 | PPI |
| MS.gene002675 | MS.gene008015 | PPI |
| MS.gene09852 | MS.gene008015 | PPI |
| MS.gene008015 | MS.gene64519 | PPI |
| MS.gene05791 | MS.gene008015 | PPI |
| MS.gene43614 | MS.gene008015 | PPI |
| MS.gene061898 | MS.gene008015 | PPI |
| MS.gene063366 | MS.gene008015 | PPI |
| MS.gene060216 | MS.gene008015 | PPI |
| MS.gene066163 | MS.gene008015 | PPI |
| MS.gene040581 | MS.gene008015 | PPI |
| MS.gene069130 | MS.gene008015 | PPI |
| MS.gene43604 | MS.gene008015 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008015.t1 | MTR_3g071560 | 98.824 | 340 | 4 | 0 | 1 | 340 | 1 | 340 | 0.0 | 689 |
| MS.gene008015.t1 | MTR_3g071550 | 90.000 | 340 | 34 | 0 | 1 | 340 | 1 | 340 | 0.0 | 575 |
| MS.gene008015.t1 | MTR_3g071540 | 81.471 | 340 | 61 | 1 | 1 | 340 | 1 | 338 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008015.t1 | AT2G40290 | 81.765 | 340 | 61 | 1 | 2 | 340 | 5 | 344 | 0.0 | 535 |
| MS.gene008015.t1 | AT5G05470 | 76.765 | 340 | 78 | 1 | 2 | 340 | 5 | 344 | 3.39e-180 | 502 |
| MS.gene008015.t1 | AT2G40290 | 89.140 | 221 | 24 | 0 | 2 | 222 | 5 | 225 | 7.24e-139 | 394 |
| MS.gene008015.t1 | AT2G40290 | 89.140 | 221 | 24 | 0 | 2 | 222 | 5 | 225 | 7.24e-139 | 394 |
Find 87 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCAATGGCTCCGAATT+TGG | 0.156697 | 3.3:-62200760 | None:intergenic |
| AACCTTGAACCTTGATTTAG+AGG | 0.251703 | 3.3:-62200400 | MS.gene008015:intron |
| TGATGGAGTTCTCCACATTA+AGG | 0.318361 | 3.3:-62199302 | MS.gene008015:intron |
| ACAGGCATTCAAAAGGGTTT+TGG | 0.330441 | 3.3:-62199518 | MS.gene008015:intron |
| ATCACCGCCACGTCCACTTC+TGG | 0.332108 | 3.3:+62200711 | None:intergenic |
| TTGACAGGAGCAAGGAATAT+TGG | 0.344432 | 3.3:-62197330 | MS.gene008015:intron |
| TGGCCTTTGTATCGCAAATA+TGG | 0.347714 | 3.3:-62200262 | MS.gene008015:CDS |
| TGGAATGGGCGAGGTTGATC+TGG | 0.384088 | 3.3:-62196659 | MS.gene008015:CDS |
| ATGGCAACACTCACCACTTT+GGG | 0.385011 | 3.3:+62197233 | None:intergenic |
| TGCCCTGAGTTTCAATGGCT+GGG | 0.400011 | 3.3:+62199351 | None:intergenic |
| TTAGTCACTTCTTGCCCATC+AGG | 0.406251 | 3.3:+62199442 | None:intergenic |
| ATCTTTATGTTCACATTGGA+TGG | 0.414003 | 3.3:-62200282 | MS.gene008015:CDS |
| GGACGTGGCGGTGATGATTC+AGG | 0.414320 | 3.3:-62200703 | MS.gene008015:CDS |
| ATGCGGAAGGCTGAAGCTGC+TGG | 0.416771 | 3.3:-62199169 | MS.gene008015:CDS |
| TACATGCGACATTCCAAATT+CGG | 0.416982 | 3.3:+62200747 | None:intergenic |
| GATGGTTCTTCGTGTTGATA+AGG | 0.427509 | 3.3:-62200538 | MS.gene008015:CDS |
| TACCTCTAAATCAAGGTTCA+AGG | 0.430422 | 3.3:+62200398 | None:intergenic |
| ATCAAGGAAGTTGGTCCTGA+TGG | 0.437985 | 3.3:-62199457 | MS.gene008015:CDS |
| CTGCCCTGAGTTTCAATGGC+TGG | 0.438165 | 3.3:+62199350 | None:intergenic |
| AGTGCGCTCAAAACCGCATC+AGG | 0.439107 | 3.3:+62199490 | None:intergenic |
| AGTGAAGAGGAAGAAGATAC+TGG | 0.441245 | 3.3:-62196679 | MS.gene008015:CDS |
| TCTTCGTGTTGATAAGGAAA+AGG | 0.441941 | 3.3:-62200532 | MS.gene008015:CDS |
| TCACCGCCACGTCCACTTCT+GGG | 0.442038 | 3.3:+62200712 | None:intergenic |
| CGCACTCACGCGTGAAATCA+AGG | 0.444977 | 3.3:-62199473 | MS.gene008015:CDS |
| ATATCTGCCCTGAGTTTCAA+TGG | 0.448822 | 3.3:+62199346 | None:intergenic |
| GAATGCCATCGCTTGTTGCT+TGG | 0.451398 | 3.3:-62197300 | MS.gene008015:CDS |
| CTTCGTGTTGATAAGGAAAA+GGG | 0.460731 | 3.3:-62200531 | MS.gene008015:CDS |
| TGGTCGAATCGAACCGGTGA+TGG | 0.467044 | 3.3:-62200556 | MS.gene008015:CDS |
| GCAACAAGTTTAATATTCAC+AGG | 0.469029 | 3.3:+62199133 | None:intergenic |
| GATGGCAACACTCACCACTT+TGG | 0.473922 | 3.3:+62197232 | None:intergenic |
| ATTGTGTACAGGCATTCAAA+AGG | 0.481254 | 3.3:-62199525 | MS.gene008015:intron |
| CTCCCCAGCCATTGAAACTC+AGG | 0.492860 | 3.3:-62199354 | MS.gene008015:CDS |
| TCAGGGTTACCTCTAAATCA+AGG | 0.493568 | 3.3:+62200391 | None:intergenic |
| CAAGGTTGGTCGAATCGAAC+CGG | 0.511442 | 3.3:-62200562 | MS.gene008015:CDS |
| GCCCTGAGTTTCAATGGCTG+GGG | 0.515830 | 3.3:+62199352 | None:intergenic |
| TTCACTTCTTCAGATACAGC+AGG | 0.523729 | 3.3:+62199412 | None:intergenic |
| TAGGATCTTTATGTTCACAT+TGG | 0.524260 | 3.3:-62200286 | MS.gene008015:CDS |
| TGCTGTATCTGAAGAAGTGA+AGG | 0.526949 | 3.3:-62199410 | MS.gene008015:CDS |
| TTGTGTACAGGCATTCAAAA+GGG | 0.527202 | 3.3:-62199524 | MS.gene008015:intron |
| GAGTGGTGAGCACATAAAGC+GGG | 0.534711 | 3.3:+62199107 | None:intergenic |
| GAGGAAGAAGATACTGGAAT+GGG | 0.536370 | 3.3:-62196673 | MS.gene008015:CDS |
| GGTTCAAGGTTTCAGCAACA+TGG | 0.539313 | 3.3:+62200412 | None:intergenic |
| CGATGTTGTTGTATTCGAGA+AGG | 0.541627 | 3.3:+62200646 | None:intergenic |
| TTTGCAGGAGGCAATGCGGA+AGG | 0.543430 | 3.3:-62199182 | MS.gene008015:intron |
| TCAAGGAAGTTGGTCCTGAT+GGG | 0.550624 | 3.3:-62199456 | MS.gene008015:CDS |
| TAGTGTTAGCAGTCTCATCA+AGG | 0.550744 | 3.3:-62200580 | MS.gene008015:CDS |
| TGATGGGCAAGAAGTGACTA+AGG | 0.551186 | 3.3:-62199440 | MS.gene008015:CDS |
| GGTGAAGAACATCGCCGACA+TGG | 0.554521 | 3.3:-62200682 | MS.gene008015:CDS |
| ATATTCAAGCTTGTGAAGAA+AGG | 0.557728 | 3.3:-62200470 | MS.gene008015:CDS |
| AGAGGAAGAAGATACTGGAA+TGG | 0.562073 | 3.3:-62196674 | MS.gene008015:CDS |
| CGAAGCAAAATACCCAGAAG+TGG | 0.565713 | 3.3:-62200724 | MS.gene008015:CDS |
| GATGTTGTTGTATTCGAGAA+GGG | 0.576142 | 3.3:+62200647 | None:intergenic |
| ACGCGTGAAATCAAGGAAGT+TGG | 0.578985 | 3.3:-62199466 | MS.gene008015:CDS |
| AGAAGATACTGGAATGGGCG+AGG | 0.594274 | 3.3:-62196668 | MS.gene008015:CDS |
| GTTAGCAGTCTCATCAAGGT+TGG | 0.595645 | 3.3:-62200576 | MS.gene008015:CDS |
| AATTCGACGACGAGAAAGCT+CGG | 0.601965 | 3.3:+62200605 | None:intergenic |
| TTACGATCTTGACAGGAGCA+AGG | 0.602205 | 3.3:-62197338 | MS.gene008015:intron |
| GTGAAGAACATCGCCGACAT+GGG | 0.603531 | 3.3:-62200681 | MS.gene008015:CDS |
| TGACCATATTTGCGATACAA+AGG | 0.605989 | 3.3:+62200259 | None:intergenic |
| TATTGTACCAACCTTGTCAA+GGG | 0.606160 | 3.3:+62199081 | None:intergenic |
| ATATTGTACCAACCTTGTCA+AGG | 0.609230 | 3.3:+62199080 | None:intergenic |
| CTCGAATACAACAACATCGA+GGG | 0.610805 | 3.3:-62200642 | MS.gene008015:CDS |
| AAAATACCCAGAAGTGGACG+TGG | 0.611420 | 3.3:-62200718 | MS.gene008015:CDS |
| CAAGGGTAAACTTACTGTGA+AGG | 0.611828 | 3.3:-62197261 | MS.gene008015:CDS |
| CAACAAGATAATGAAGAGGT+CGG | 0.615161 | 3.3:-62196715 | MS.gene008015:CDS |
| AACCTTGTCAAGGGTATGAG+TGG | 0.617048 | 3.3:+62199090 | None:intergenic |
| TCCCCAGCCATTGAAACTCA+GGG | 0.617631 | 3.3:-62199353 | MS.gene008015:CDS |
| TGATTCCAAGCAACAAGCGA+TGG | 0.618061 | 3.3:+62197295 | None:intergenic |
| CACCACTCATACCCTTGACA+AGG | 0.621079 | 3.3:-62199092 | MS.gene008015:intron |
| GATACAACAAGATAATGAAG+AGG | 0.622833 | 3.3:-62196719 | MS.gene008015:CDS |
| AGGCGATGATGACAGTGAAG+AGG | 0.628516 | 3.3:-62196692 | MS.gene008015:CDS |
| AACGGTTAAAGACCTTAATG+TGG | 0.631187 | 3.3:+62199290 | None:intergenic |
| TCAACACGAAGAACCATCAC+CGG | 0.639120 | 3.3:+62200543 | None:intergenic |
| CAACAAGTTTAATATTCACA+GGG | 0.641956 | 3.3:+62199134 | None:intergenic |
| TGTGAAGGAGCAACCCAAAG+TGG | 0.645392 | 3.3:-62197246 | MS.gene008015:intron |
| GGCGAGGTTGATCTGGACAA+TGG | 0.654514 | 3.3:-62196652 | MS.gene008015:CDS |
| AGTGGTGAGCACATAAAGCG+GGG | 0.659710 | 3.3:+62199108 | None:intergenic |
| TGAGTGGTGAGCACATAAAG+CGG | 0.674509 | 3.3:+62199106 | None:intergenic |
| GGAATCAATAGAAAAGCACA+AGG | 0.675937 | 3.3:-62197279 | MS.gene008015:CDS |
| GGACACGTAAGCACCCATGT+CGG | 0.696389 | 3.3:+62200668 | None:intergenic |
| ATACCCAGAAGTGGACGTGG+CGG | 0.700110 | 3.3:-62200715 | MS.gene008015:CDS |
| CAAGATAATGAAGAGGTCGG+AGG | 0.711850 | 3.3:-62196712 | MS.gene008015:CDS |
| TGGGCAAGAAGTGACTAAGG+TGG | 0.716625 | 3.3:-62199437 | MS.gene008015:CDS |
| GTGGTGAGCACATAAAGCGG+GGG | 0.735186 | 3.3:+62199109 | None:intergenic |
| TCTCGAATACAACAACATCG+AGG | 0.737927 | 3.3:-62200643 | MS.gene008015:CDS |
| TGGCTTTGCAGGAGGCAATG+CGG | 0.745308 | 3.3:-62199186 | MS.gene008015:intron |
| GAATCAATAGAAAAGCACAA+GGG | 0.753274 | 3.3:-62197278 | MS.gene008015:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAAAAAAAAT+AGG | + | chr3.3:62197028-62197047 | None:intergenic | 0.0% |
| !! | AGATATTAAAATTTATGTTA+GGG | + | chr3.3:62198678-62198697 | None:intergenic | 10.0% |
| !!! | AAACAATTTTTATTTGTAAT+TGG | - | chr3.3:62197162-62197181 | MS.gene008015:intron | 10.0% |
| !!! | AACAATTTTTATTTGTAATT+GGG | - | chr3.3:62197163-62197182 | MS.gene008015:intron | 10.0% |
| !!! | ACTTTTTTTTTTTTTTTTGA+GGG | + | chr3.3:62199389-62199408 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTTTGTATCAAA+CGG | + | chr3.3:62198489-62198508 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGTCTTG+TGG | - | chr3.3:62199393-62199412 | MS.gene008015:CDS | 15.0% |
| !! | AAATATAAACCGTAATTATA+GGG | + | chr3.3:62200408-62200427 | None:intergenic | 15.0% |
| !! | GAGATATTAAAATTTATGTT+AGG | + | chr3.3:62198679-62198698 | None:intergenic | 15.0% |
| !! | TAAAAATGAATGATTAAAGA+AGG | + | chr3.3:62199431-62199450 | None:intergenic | 15.0% |
| !! | TAAATATAAACCGTAATTAT+AGG | + | chr3.3:62200409-62200428 | None:intergenic | 15.0% |
| !! | TAACTTATAAATATGATATG+TGG | - | chr3.3:62197360-62197379 | MS.gene008015:intron | 15.0% |
| !! | TTATGTTAATTGAATTATTG+TGG | - | chr3.3:62197070-62197089 | MS.gene008015:intron | 15.0% |
| !!! | AAAAAATAGATTGTTTTTAG+AGG | - | chr3.3:62198604-62198623 | MS.gene008015:intron | 15.0% |
| !!! | ATCATGTTTTTATAATCATT+TGG | - | chr3.3:62198180-62198199 | MS.gene008015:intron | 15.0% |
| !!! | ATGTGATTGTTATTTTATTT+TGG | - | chr3.3:62198125-62198144 | MS.gene008015:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTTTGAG+GGG | + | chr3.3:62199388-62199407 | None:intergenic | 15.0% |
| !!! | GACTTTTTTTTTTTTTTTTG+AGG | + | chr3.3:62199390-62199409 | None:intergenic | 15.0% |
| !!! | TCATTTTTAATACCATTTTA+TGG | - | chr3.3:62199442-62199461 | MS.gene008015:CDS | 15.0% |
| !!! | TGTGATTGTTATTTTATTTT+GGG | - | chr3.3:62198126-62198145 | MS.gene008015:intron | 15.0% |
| !!! | TTAATTTTTTTGTATCAAAC+GGG | + | chr3.3:62198488-62198507 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGAGG+GGG | + | chr3.3:62199387-62199406 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCAAGCTGTA+AGG | - | chr3.3:62200329-62200348 | MS.gene008015:intron | 20.0% |
| !! | AAAAAAAAATCAAGCTGTAA+GGG | - | chr3.3:62200330-62200349 | MS.gene008015:intron | 20.0% |
| !! | AAAAAAATAGGACTTTAATC+AGG | + | chr3.3:62197016-62197035 | None:intergenic | 20.0% |
| !! | AAAAAATAGGACTTTAATCA+GGG | + | chr3.3:62197015-62197034 | None:intergenic | 20.0% |
| !! | AATAGTAATATCTATAAGGT+CGG | + | chr3.3:62199909-62199928 | None:intergenic | 20.0% |
| !! | AATTACATTCAATAGAAGAA+TGG | + | chr3.3:62200017-62200036 | None:intergenic | 20.0% |
| !! | ACAATAAAGTCTATGATATA+GGG | + | chr3.3:62197846-62197865 | None:intergenic | 20.0% |
| !! | ACACGCAAAAAAATAAAATA+AGG | - | chr3.3:62198974-62198993 | MS.gene008015:intron | 20.0% |
| !! | ACATAGACAAATAAAAAAAG+TGG | + | chr3.3:62200230-62200249 | None:intergenic | 20.0% |
| !! | ACATATCAACATAAAAAAGA+TGG | + | chr3.3:62200556-62200575 | None:intergenic | 20.0% |
| !! | CAAAAACTAAGTACTTATTT+CGG | + | chr3.3:62200381-62200400 | None:intergenic | 20.0% |
| !! | CAACAATAGTAATATCTATA+AGG | + | chr3.3:62199913-62199932 | None:intergenic | 20.0% |
| !! | CTTATAGATATTACTATTGT+TGG | - | chr3.3:62199911-62199930 | MS.gene008015:intron | 20.0% |
| !! | GTAAAAGAATTTAAAAGTCA+AGG | - | chr3.3:62200434-62200453 | MS.gene008015:CDS | 20.0% |
| !! | GTTAAAAAATCTATTTAGCA+CGG | + | chr3.3:62199715-62199734 | None:intergenic | 20.0% |
| !! | TAACTTATAAATACGATATG+TGG | - | chr3.3:62197400-62197419 | MS.gene008015:intron | 20.0% |
| !! | TATTCAGAATATTTGTCAAT+TGG | + | chr3.3:62198894-62198913 | None:intergenic | 20.0% |
| !! | TTTAAAAGTTAAGTACCTAA+AGG | - | chr3.3:62199659-62199678 | MS.gene008015:intron | 20.0% |
| !!! | AAATAAAAAAAGTGGATTGA+CGG | + | chr3.3:62200222-62200241 | None:intergenic | 20.0% |
| !!! | AAATAAGTACTTAGTTTTTG+AGG | - | chr3.3:62200381-62200400 | MS.gene008015:intron | 20.0% |
| !!! | ACCATTTTATGGTTTATATT+GGG | - | chr3.3:62199453-62199472 | MS.gene008015:CDS | 20.0% |
| !!! | ATGAAATGTTTTCAATTTGA+TGG | - | chr3.3:62198067-62198086 | MS.gene008015:intron | 20.0% |
| !!! | ATTGGTTGTTTTATTATCAT+TGG | + | chr3.3:62198830-62198849 | None:intergenic | 20.0% |
| !!! | GTTATTTTATTTTGGGTTAT+TGG | - | chr3.3:62198133-62198152 | MS.gene008015:intron | 20.0% |
| !!! | TAATTTTACAACACATGTTT+AGG | + | chr3.3:62199754-62199773 | None:intergenic | 20.0% |
| !!! | TACCATTTTATGGTTTATAT+TGG | - | chr3.3:62199452-62199471 | MS.gene008015:CDS | 20.0% |
| !!! | TCTTTTCAATTAACTTTACA+CGG | - | chr3.3:62197453-62197472 | MS.gene008015:intron | 20.0% |
| !!! | TTTTTTTGTTAATGGTGTTT+TGG | - | chr3.3:62197047-62197066 | MS.gene008015:intron | 20.0% |
| ! | AAACATTATTTCCAGAAGAT+AGG | - | chr3.3:62199296-62199315 | MS.gene008015:intron | 25.0% |
| ! | AAATTTGAAAAGATTAACCC+TGG | - | chr3.3:62199479-62199498 | MS.gene008015:CDS | 25.0% |
| ! | AATCAGTCTCAGTTAATTAT+TGG | + | chr3.3:62198848-62198867 | None:intergenic | 25.0% |
| ! | AATTTGAAAAGATTAACCCT+GGG | - | chr3.3:62199480-62199499 | MS.gene008015:CDS | 25.0% |
| ! | ATACATATACATGTGTTCAA+AGG | - | chr3.3:62200522-62200541 | MS.gene008015:CDS | 25.0% |
| ! | ATGATTAAATTTGCAGTGTT+TGG | - | chr3.3:62197319-62197338 | MS.gene008015:CDS | 25.0% |
| ! | ATTGTAAAAGATCTCTTGAA+CGG | - | chr3.3:62197767-62197786 | MS.gene008015:intron | 25.0% |
| ! | CAACAAGTTTAATATTCACA+GGG | + | chr3.3:62198255-62198274 | None:intergenic | 25.0% |
| ! | CAATAAAGTCTATGATATAG+GGG | + | chr3.3:62197845-62197864 | None:intergenic | 25.0% |
| ! | CACAATAAAGTCTATGATAT+AGG | + | chr3.3:62197847-62197866 | None:intergenic | 25.0% |
| ! | GTTTCCAATATAACACTTTA+CGG | - | chr3.3:62199953-62199972 | MS.gene008015:intron | 25.0% |
| ! | TAACAATCACATAACAGAAA+CGG | + | chr3.3:62198117-62198136 | None:intergenic | 25.0% |
| ! | TAGAGAAATTAAGTGTCAAA+AGG | - | chr3.3:62198628-62198647 | MS.gene008015:intron | 25.0% |
| ! | TTCTCTAAGCTAGTAAAAAT+AGG | - | chr3.3:62197536-62197555 | MS.gene008015:intron | 25.0% |
| ! | TTGATATGTGTCTTTATTGA+GGG | - | chr3.3:62200567-62200586 | MS.gene008015:CDS | 25.0% |
| ! | TTTCCAATATAACACTTTAC+GGG | - | chr3.3:62199954-62199973 | MS.gene008015:intron | 25.0% |
| !! | CCATTTTATGGTTTATATTG+GGG | - | chr3.3:62199454-62199473 | MS.gene008015:CDS | 25.0% |
| !! | CTTTTCAATTAACTTTACAC+GGG | - | chr3.3:62197454-62197473 | MS.gene008015:intron | 25.0% |
| !! | TTTTATTATCATTGGCAACT+TGG | + | chr3.3:62198822-62198841 | None:intergenic | 25.0% |
| !!! | AATAAAAAAAGTGGATTGAC+GGG | + | chr3.3:62200221-62200240 | None:intergenic | 25.0% |
| !!! | ATCTTCTGGAAATAATGTTT+TGG | + | chr3.3:62199296-62199315 | None:intergenic | 25.0% |
| !!! | TTATTTTGGGTTATTGGATA+TGG | - | chr3.3:62198139-62198158 | MS.gene008015:intron | 25.0% |
| AAATGCTAATGACTACAGTT+GGG | + | chr3.3:62199591-62199610 | None:intergenic | 30.0% | |
| AATTAAGTGTCAAAAGGTGA+AGG | - | chr3.3:62198634-62198653 | MS.gene008015:intron | 30.0% | |
| AGAAGATAAAGGATATAGAG+AGG | + | chr3.3:62200179-62200198 | None:intergenic | 30.0% | |
| AGTTAAGTACCTAAAGGATA+AGG | - | chr3.3:62199665-62199684 | MS.gene008015:intron | 30.0% | |
| ATATTCAAGCTTGTGAAGAA+AGG | - | chr3.3:62196916-62196935 | MS.gene008015:intron | 30.0% | |
| ATCTTTATGTTCACATTGGA+TGG | - | chr3.3:62197104-62197123 | MS.gene008015:intron | 30.0% | |
| ATTAAAGAAGGACATTACGT+TGG | + | chr3.3:62199419-62199438 | None:intergenic | 30.0% | |
| ATTTGCATTCAAAGTCCTAT+AGG | - | chr3.3:62199988-62200007 | MS.gene008015:intron | 30.0% | |
| CATCTTATGTTGCAGAAATA+AGG | + | chr3.3:62197189-62197208 | None:intergenic | 30.0% | |
| CCATTATATAAACAACTCCA+AGG | + | chr3.3:62200497-62200516 | None:intergenic | 30.0% | |
| CCCCAATATAAACCATAAAA+TGG | + | chr3.3:62199457-62199476 | None:intergenic | 30.0% | |
| CCTTGGAGTTGTTTATATAA+TGG | - | chr3.3:62200494-62200513 | MS.gene008015:CDS | 30.0% | |
| GAATTATTGTGGCTATTTGT+AGG | - | chr3.3:62197081-62197100 | MS.gene008015:intron | 30.0% | |
| GATACAACAAGATAATGAAG+AGG | - | chr3.3:62200667-62200686 | MS.gene008015:CDS | 30.0% | |
| GCAACAAGTTTAATATTCAC+AGG | + | chr3.3:62198256-62198275 | None:intergenic | 30.0% | |
| GCAATGATATTTAAGTCTTG+TGG | - | chr3.3:62199357-62199376 | MS.gene008015:CDS | 30.0% | |
| GCAGTGTTTGGTAAAATTAA+CGG | - | chr3.3:62197331-62197350 | MS.gene008015:intron | 30.0% | |
| GTCTTAACATAAATCCTATC+TGG | - | chr3.3:62199625-62199644 | MS.gene008015:intron | 30.0% | |
| GTTGATATGTGTCTTTATTG+AGG | - | chr3.3:62200566-62200585 | MS.gene008015:CDS | 30.0% | |
| TAAATATCATTGCTAGCTAG+TGG | + | chr3.3:62199350-62199369 | None:intergenic | 30.0% | |
| TAGGATCTTTATGTTCACAT+TGG | - | chr3.3:62197100-62197119 | MS.gene008015:intron | 30.0% | |
| TATCCTTTATCTTCTACTAG+CGG | - | chr3.3:62200184-62200203 | MS.gene008015:intron | 30.0% | |
| TATGAAAATGAGCTAGAAAC+AGG | - | chr3.3:62197724-62197743 | MS.gene008015:intron | 30.0% | |
| TATGATATGTGGTGAATTGA+CGG | - | chr3.3:62197371-62197390 | MS.gene008015:intron | 30.0% | |
| TCATAGACTTTATTGTGTAC+AGG | - | chr3.3:62197850-62197869 | MS.gene008015:intron | 30.0% | |
| TCTTAGAGCAAAAAGAAGAA+CGG | + | chr3.3:62198767-62198786 | None:intergenic | 30.0% | |
| TGATATGTGTCTTTATTGAG+GGG | - | chr3.3:62200568-62200587 | MS.gene008015:CDS | 30.0% | |
| TGCAACATAAGATGAAATGA+AGG | - | chr3.3:62197195-62197214 | MS.gene008015:intron | 30.0% | |
| TTCCAATATAACACTTTACG+GGG | - | chr3.3:62199955-62199974 | MS.gene008015:intron | 30.0% | |
| TTGTAAAAGATCTCTTGAAC+GGG | - | chr3.3:62197768-62197787 | MS.gene008015:intron | 30.0% | |
| ! | GAATCAATAGAAAAGCACAA+GGG | - | chr3.3:62200108-62200127 | MS.gene008015:intron | 30.0% |
| ! | TATTTTGTTACGATCTTGAC+AGG | - | chr3.3:62200041-62200060 | MS.gene008015:intron | 30.0% |
| !! | AGTTGATAAGCTAGCTTATA+GGG | - | chr3.3:62197245-62197264 | MS.gene008015:intron | 30.0% |
| !! | GCTGTTTTCATTAGTTATCT+TGG | - | chr3.3:62197695-62197714 | MS.gene008015:intron | 30.0% |
| !! | TTATAATCATTTGGCTTTGC+AGG | - | chr3.3:62198189-62198208 | MS.gene008015:intron | 30.0% |
| !!! | CAAAAGGTGAAGGTATTTTT+CGG | - | chr3.3:62198644-62198663 | MS.gene008015:intron | 30.0% |
| !!! | TAATGTTTTGGTAAGAATCC+TGG | + | chr3.3:62199284-62199303 | None:intergenic | 30.0% |
| !!! | TTTTGAGGTCCCTATAATTA+CGG | - | chr3.3:62200396-62200415 | MS.gene008015:intron | 30.0% |
| AACCTTGAACCTTGATTTAG+AGG | - | chr3.3:62196986-62197005 | MS.gene008015:intron | 35.0% | |
| AACGGTTAAAGACCTTAATG+TGG | + | chr3.3:62198099-62198118 | None:intergenic | 35.0% | |
| ACAAGCTAACTTATAGCTGA+TGG | - | chr3.3:62197284-62197303 | MS.gene008015:CDS | 35.0% | |
| AGGTTGTGGACATATCTTAA+GGG | - | chr3.3:62197744-62197763 | MS.gene008015:intron | 35.0% | |
| ATAGAAGAATGGTTGCCTAT+AGG | + | chr3.3:62200006-62200025 | None:intergenic | 35.0% | |
| ATATGCTCATGAGAAAGTGA+CGG | - | chr3.3:62197561-62197580 | MS.gene008015:intron | 35.0% | |
| ATATGTGTCTTTATTGAGGG+GGG | - | chr3.3:62200570-62200589 | MS.gene008015:CDS | 35.0% | |
| ATATTGTACCAACCTTGTCA+AGG | + | chr3.3:62198309-62198328 | None:intergenic | 35.0% | |
| ATTGTGTACAGGCATTCAAA+AGG | - | chr3.3:62197861-62197880 | MS.gene008015:intron | 35.0% | |
| CAACAAGATAATGAAGAGGT+CGG | - | chr3.3:62200671-62200690 | MS.gene008015:CDS | 35.0% | |
| GAAATGCTAATGACTACAGT+TGG | + | chr3.3:62199592-62199611 | None:intergenic | 35.0% | |
| GAAGAAATTGTCCGAAAAGT+CGG | - | chr3.3:62200468-62200487 | MS.gene008015:CDS | 35.0% | |
| GACTAGATTATCCTATCTTC+TGG | + | chr3.3:62199310-62199329 | None:intergenic | 35.0% | |
| GATAAAGGATATAGAGAGGA+TGG | + | chr3.3:62200175-62200194 | None:intergenic | 35.0% | |
| GATATGTGTCTTTATTGAGG+GGG | - | chr3.3:62200569-62200588 | MS.gene008015:CDS | 35.0% | |
| GATGTTGTTGTATTCGAGAA+GGG | + | chr3.3:62196742-62196761 | None:intergenic | 35.0% | |
| GGCAAAATAGAAACCAAACT+AGG | - | chr3.3:62199096-62199115 | MS.gene008015:CDS | 35.0% | |
| TACATGCGACATTCCAAATT+CGG | + | chr3.3:62196642-62196661 | None:intergenic | 35.0% | |
| TACCTCTAAATCAAGGTTCA+AGG | + | chr3.3:62196991-62197010 | None:intergenic | 35.0% | |
| TATTGTACCAACCTTGTCAA+GGG | + | chr3.3:62198308-62198327 | None:intergenic | 35.0% | |
| TCCAATATAACACTTTACGG+GGG | - | chr3.3:62199956-62199975 | MS.gene008015:intron | 35.0% | |
| TGAACTGAACCTTATCCTTT+AGG | + | chr3.3:62199677-62199696 | None:intergenic | 35.0% | |
| TGACCATATTTGCGATACAA+AGG | + | chr3.3:62197130-62197149 | None:intergenic | 35.0% | |
| TTGACAATGCATTGTGATTC+AGG | - | chr3.3:62200601-62200620 | MS.gene008015:CDS | 35.0% | |
| TTGACTAGAAAAGATCCGAT+TGG | + | chr3.3:62197590-62197609 | None:intergenic | 35.0% | |
| TTGTACTCACACATGTACTT+CGG | + | chr3.3:62199006-62199025 | None:intergenic | 35.0% | |
| TTGTGTACAGGCATTCAAAA+GGG | - | chr3.3:62197862-62197881 | MS.gene008015:intron | 35.0% | |
| ! | CAAATATGGTCATGCTTTTG+AGG | - | chr3.3:62197138-62197157 | MS.gene008015:intron | 35.0% |
| ! | CTTCGTGTTGATAAGGAAAA+GGG | - | chr3.3:62196855-62196874 | MS.gene008015:intron | 35.0% |
| ! | GATTGTCTTTTGTGCTGAAT+TGG | - | chr3.3:62198350-62198369 | MS.gene008015:intron | 35.0% |
| ! | GGAATCAATAGAAAAGCACA+AGG | - | chr3.3:62200107-62200126 | MS.gene008015:intron | 35.0% |
| ! | GTTGATAAGCTAGCTTATAG+GGG | - | chr3.3:62197246-62197265 | MS.gene008015:intron | 35.0% |
| ! | TCTTCGTGTTGATAAGGAAA+AGG | - | chr3.3:62196854-62196873 | MS.gene008015:intron | 35.0% |
| !! | AGTTTGGTTTCTATTTTGCC+CGG | + | chr3.3:62199096-62199115 | None:intergenic | 35.0% |
| !! | CAGTTGATAAGCTAGCTTAT+AGG | - | chr3.3:62197244-62197263 | MS.gene008015:intron | 35.0% |
| !! | GAAGAACGGTTATTTTGTGA+AGG | + | chr3.3:62198753-62198772 | None:intergenic | 35.0% |
| !! | GGTCGTTTTGTTGTATGATT+AGG | - | chr3.3:62198435-62198454 | MS.gene008015:intron | 35.0% |
| !! | TTCTTTTGTGAAGACTTGCT+TGG | - | chr3.3:62198789-62198808 | MS.gene008015:intron | 35.0% |
| !!! | TTTTTTTTTTTTGAGGGGGC+TGG | + | chr3.3:62199383-62199402 | None:intergenic | 35.0% |
| AAAACAGCTCACTACCAGAT+AGG | + | chr3.3:62199642-62199661 | None:intergenic | 40.0% | |
| AAGCACGAATGACTTAAAGC+AGG | + | chr3.3:62199793-62199812 | None:intergenic | 40.0% | |
| AAGCCAAAAAACAGCAACTC+CGG | - | chr3.3:62199056-62199075 | MS.gene008015:intron | 40.0% | |
| AATATAACACTTTACGGGGG+CGG | - | chr3.3:62199959-62199978 | MS.gene008015:intron | 40.0% | |
| AATGAGCTAGAAACAGGTTG+TGG | - | chr3.3:62197730-62197749 | MS.gene008015:intron | 40.0% | |
| ACTGTACTCACATCCTAGTT+TGG | + | chr3.3:62199112-62199131 | None:intergenic | 40.0% | |
| AGAAAGTGACGGTTACCAAT+CGG | - | chr3.3:62197572-62197591 | MS.gene008015:intron | 40.0% | |
| AGAGGAAGAAGATACTGGAA+TGG | - | chr3.3:62200712-62200731 | MS.gene008015:CDS | 40.0% | |
| AGATGAAATGAAGGCTCTCT+TGG | - | chr3.3:62197204-62197223 | MS.gene008015:intron | 40.0% | |
| AGTGAAGAGGAAGAAGATAC+TGG | - | chr3.3:62200707-62200726 | MS.gene008015:CDS | 40.0% | |
| ATATCTGCCCTGAGTTTCAA+TGG | + | chr3.3:62198043-62198062 | None:intergenic | 40.0% | |
| CAAGGGTAAACTTACTGTGA+AGG | - | chr3.3:62200125-62200144 | MS.gene008015:intron | 40.0% | |
| CAGGTTGTGGACATATCTTA+AGG | - | chr3.3:62197743-62197762 | MS.gene008015:intron | 40.0% | |
| CGATGTTGTTGTATTCGAGA+AGG | + | chr3.3:62196743-62196762 | None:intergenic | 40.0% | |
| CTATGATATAGGGGTCTGTT+TGG | + | chr3.3:62197836-62197855 | None:intergenic | 40.0% | |
| CTCGAATACAACAACATCGA+GGG | - | chr3.3:62196744-62196763 | MS.gene008015:CDS | 40.0% | |
| GAGGAAGAAGATACTGGAAT+GGG | - | chr3.3:62200713-62200732 | MS.gene008015:CDS | 40.0% | |
| GATGCACATTTCACCTTTGA+GGG | - | chr3.3:62198372-62198391 | MS.gene008015:intron | 40.0% | |
| GCAAGCAAACAGATTGTGTT+TGG | - | chr3.3:62199558-62199577 | MS.gene008015:intron | 40.0% | |
| TACTTCTACGCAAGACTAGT+TGG | - | chr3.3:62198720-62198739 | MS.gene008015:intron | 40.0% | |
| TAGTGTTAGCAGTCTCATCA+AGG | - | chr3.3:62196806-62196825 | MS.gene008015:intron | 40.0% | |
| TCAGGGTTACCTCTAAATCA+AGG | + | chr3.3:62196998-62197017 | None:intergenic | 40.0% | |
| TCTCGAATACAACAACATCG+AGG | - | chr3.3:62196743-62196762 | MS.gene008015:CDS | 40.0% | |
| TCTTTACGCTGTTGGATTGT+CGG | - | chr3.3:62198413-62198432 | MS.gene008015:intron | 40.0% | |
| TGATGGAGTTCTCCACATTA+AGG | - | chr3.3:62198084-62198103 | MS.gene008015:intron | 40.0% | |
| TGCTGTATCTGAAGAAGTGA+AGG | - | chr3.3:62197976-62197995 | MS.gene008015:intron | 40.0% | |
| TGGACAGCATATGACATGTA+TGG | - | chr3.3:62199931-62199950 | MS.gene008015:intron | 40.0% | |
| TGGCCTTTGTATCGCAAATA+TGG | - | chr3.3:62197124-62197143 | MS.gene008015:intron | 40.0% | |
| TGTCCGCTAGTAGAAGATAA+AGG | + | chr3.3:62200190-62200209 | None:intergenic | 40.0% | |
| TTCACTTCTTCAGATACAGC+AGG | + | chr3.3:62197977-62197996 | None:intergenic | 40.0% | |
| TTGACAGGAGCAAGGAATAT+TGG | - | chr3.3:62200056-62200075 | MS.gene008015:intron | 40.0% | |
| TTGCGCTATCCACTCATAAT+GGG | - | chr3.3:62199247-62199266 | MS.gene008015:intron | 40.0% | |
| ! | ACAGGCATTCAAAAGGGTTT+TGG | - | chr3.3:62197868-62197887 | MS.gene008015:intron | 40.0% |
| ! | GATGGTTCTTCGTGTTGATA+AGG | - | chr3.3:62196848-62196867 | MS.gene008015:intron | 40.0% |
| !! | ACTAGTCTTGCGTAGAAGTA+TGG | + | chr3.3:62198720-62198739 | None:intergenic | 40.0% |
| !! | TAATCATTTGGCTTTGCAGG+AGG | - | chr3.3:62198192-62198211 | MS.gene008015:intron | 40.0% |
| AAAATACCCAGAAGTGGACG+TGG | - | chr3.3:62196668-62196687 | MS.gene008015:CDS | 45.0% | |
| AAGATTAACCCTGGGAGCAA+TGG | - | chr3.3:62199488-62199507 | MS.gene008015:CDS | 45.0% | |
| AATCATCTCCATTGCTCCCA+GGG | + | chr3.3:62199499-62199518 | None:intergenic | 45.0% | |
| AATTCGACGACGAGAAAGCT+CGG | + | chr3.3:62196784-62196803 | None:intergenic | 45.0% | |
| ACGCGTGAAATCAAGGAAGT+TGG | - | chr3.3:62197920-62197939 | MS.gene008015:intron | 45.0% | |
| ACTCATACCCTTGACAAGGT+TGG | - | chr3.3:62198298-62198317 | MS.gene008015:intron | 45.0% | |
| AGCAAGTGCATAACCCTCAA+AGG | + | chr3.3:62198388-62198407 | None:intergenic | 45.0% | |
| AGCCAAAAAACAGCAACTCC+GGG | - | chr3.3:62199057-62199076 | MS.gene008015:intron | 45.0% | |
| ATGGCAACACTCACCACTTT+GGG | + | chr3.3:62200156-62200175 | None:intergenic | 45.0% | |
| CAAGATAATGAAGAGGTCGG+AGG | - | chr3.3:62200674-62200693 | MS.gene008015:CDS | 45.0% | |
| CGAAGCAAAATACCCAGAAG+TGG | - | chr3.3:62196662-62196681 | MS.gene008015:CDS | 45.0% | |
| CTGCTTGTACCCATTATGAG+TGG | + | chr3.3:62199259-62199278 | None:intergenic | 45.0% | |
| CTTTACGCTGTTGGATTGTC+GGG | - | chr3.3:62198414-62198433 | MS.gene008015:intron | 45.0% | |
| GCTACTACTCTTTACGCTGT+TGG | - | chr3.3:62198405-62198424 | MS.gene008015:intron | 45.0% | |
| GGATGCACATTTCACCTTTG+AGG | - | chr3.3:62198371-62198390 | MS.gene008015:intron | 45.0% | |
| GGGATCACTGGTGTTTATAC+TGG | - | chr3.3:62197788-62197807 | MS.gene008015:intron | 45.0% | |
| GGTTCAAGGTTTCAGCAACA+TGG | + | chr3.3:62196977-62196996 | None:intergenic | 45.0% | |
| GTTAGCAGTCTCATCAAGGT+TGG | - | chr3.3:62196810-62196829 | MS.gene008015:intron | 45.0% | |
| GTTGCGCTATCCACTCATAA+TGG | - | chr3.3:62199246-62199265 | MS.gene008015:intron | 45.0% | |
| TCAACACGAAGAACCATCAC+CGG | + | chr3.3:62196846-62196865 | None:intergenic | 45.0% | |
| TGAGAGAACCACCAAACAAG+AGG | - | chr3.3:62199145-62199164 | MS.gene008015:CDS | 45.0% | |
| TGAGTGGTGAGCACATAAAG+CGG | + | chr3.3:62198283-62198302 | None:intergenic | 45.0% | |
| TGATTCCAAGCAACAAGCGA+TGG | + | chr3.3:62200094-62200113 | None:intergenic | 45.0% | |
| TGGGAGCAATGGAGATGATT+GGG | - | chr3.3:62199499-62199518 | MS.gene008015:CDS | 45.0% | |
| TTACGATCTTGACAGGAGCA+AGG | - | chr3.3:62200048-62200067 | MS.gene008015:intron | 45.0% | |
| TTAGTCACTTCTTGCCCATC+AGG | + | chr3.3:62197947-62197966 | None:intergenic | 45.0% | |
| ! | AACCTTGTCAAGGGTATGAG+TGG | + | chr3.3:62198299-62198318 | None:intergenic | 45.0% |
| ! | ATCAAGGAAGTTGGTCCTGA+TGG | - | chr3.3:62197929-62197948 | MS.gene008015:intron | 45.0% |
| ! | GCCCCCGTAAAGTGTTATAT+TGG | + | chr3.3:62199960-62199979 | None:intergenic | 45.0% |
| ! | TCAAGGAAGTTGGTCCTGAT+GGG | - | chr3.3:62197930-62197949 | MS.gene008015:intron | 45.0% |
| ! | TCATTGCTAGCTAGTGGATG+TGG | + | chr3.3:62199344-62199363 | None:intergenic | 45.0% |
| ! | TGATGGGCAAGAAGTGACTA+AGG | - | chr3.3:62197946-62197965 | MS.gene008015:intron | 45.0% |
| ! | TGTGGGTCACTGTTGTGTTT+TGG | + | chr3.3:62199183-62199202 | None:intergenic | 45.0% |
| ! | TTGGTGGTTCTCTCAGTACA+GGG | + | chr3.3:62199140-62199159 | None:intergenic | 45.0% |
| ! | TTTGGTGGTTCTCTCAGTAC+AGG | + | chr3.3:62199141-62199160 | None:intergenic | 45.0% |
| !!! | CTCCAAGGTTACCGACTTTT+CGG | + | chr3.3:62200482-62200501 | None:intergenic | 45.0% |
| !!! | TCACTGTTGTGTTTTGGCCT+GGG | + | chr3.3:62199177-62199196 | None:intergenic | 45.0% |
| !! | AAAAATAAATTAATTATTGA+AGG | + | chr3.3:62200285-62200304 | None:intergenic | 5.0% |
| !!! | TATTTTTTTTTTTTTGTTAA+TGG | - | chr3.3:62197039-62197058 | MS.gene008015:intron | 5.0% |
| AGAAGATACTGGAATGGGCG+AGG | - | chr3.3:62200718-62200737 | MS.gene008015:CDS | 50.0% | |
| AGGCGATGATGACAGTGAAG+AGG | - | chr3.3:62200694-62200713 | MS.gene008015:CDS | 50.0% | |
| AGTGGTGAGCACATAAAGCG+GGG | + | chr3.3:62198281-62198300 | None:intergenic | 50.0% | |
| CAATCATCTCCATTGCTCCC+AGG | + | chr3.3:62199500-62199519 | None:intergenic | 50.0% | |
| CACCACTCATACCCTTGACA+AGG | - | chr3.3:62198294-62198313 | MS.gene008015:intron | 50.0% | |
| CCAAAAAACAGCAACTCCGG+GGG | - | chr3.3:62199059-62199078 | MS.gene008015:intron | 50.0% | |
| CTGGGAGCAATGGAGATGAT+TGG | - | chr3.3:62199498-62199517 | MS.gene008015:CDS | 50.0% | |
| GAGTGGTGAGCACATAAAGC+GGG | + | chr3.3:62198282-62198301 | None:intergenic | 50.0% | |
| GATCTCTTGAACGGGATCAC+TGG | - | chr3.3:62197776-62197795 | MS.gene008015:intron | 50.0% | |
| GATGGCAACACTCACCACTT+TGG | + | chr3.3:62200157-62200176 | None:intergenic | 50.0% | |
| GCCAAAAAACAGCAACTCCG+GGG | - | chr3.3:62199058-62199077 | MS.gene008015:intron | 50.0% | |
| GTCCGAAAAGTCGGTAACCT+TGG | - | chr3.3:62200477-62200496 | MS.gene008015:CDS | 50.0% | |
| GTGAAGAACATCGCCGACAT+GGG | - | chr3.3:62196705-62196724 | MS.gene008015:CDS | 50.0% | |
| TCCCCAGCCATTGAAACTCA+GGG | - | chr3.3:62198033-62198052 | MS.gene008015:intron | 50.0% | |
| TGCCCTGAGTTTCAATGGCT+GGG | + | chr3.3:62198038-62198057 | None:intergenic | 50.0% | |
| TGGGCAAGAAGTGACTAAGG+TGG | - | chr3.3:62197949-62197968 | MS.gene008015:intron | 50.0% | |
| TGTGAAGGAGCAACCCAAAG+TGG | - | chr3.3:62200140-62200159 | MS.gene008015:intron | 50.0% | |
| ! | AGCGCAACCTGTTTTCCCAT+GGG | + | chr3.3:62199234-62199253 | None:intergenic | 50.0% |
| ! | CAAGGTTGGTCGAATCGAAC+CGG | - | chr3.3:62196824-62196843 | MS.gene008015:intron | 50.0% |
| ! | CGTAGAAGTATGGCGACACA+AGG | + | chr3.3:62198710-62198729 | None:intergenic | 50.0% |
| ! | CTATTTTGCCCGGTTGCTGA+CGG | + | chr3.3:62199086-62199105 | None:intergenic | 50.0% |
| ! | GAATGCCATCGCTTGTTGCT+TGG | - | chr3.3:62200086-62200105 | MS.gene008015:intron | 50.0% |
| ! | TAATGGGTACAAGCAGAGCC+AGG | - | chr3.3:62199263-62199282 | MS.gene008015:intron | 50.0% |
| ! | TAGCGCAACCTGTTTTCCCA+TGG | + | chr3.3:62199235-62199254 | None:intergenic | 50.0% |
| !! | AAAAGTGGATTGACGGGCAG+TGG | + | chr3.3:62200215-62200234 | None:intergenic | 50.0% |
| !!! | GGTTTTGGCTGATCCTGATG+CGG | - | chr3.3:62197883-62197902 | MS.gene008015:intron | 50.0% |
| !!! | GTCACTGTTGTGTTTTGGCC+TGG | + | chr3.3:62199178-62199197 | None:intergenic | 50.0% |
| AGTGCGCTCAAAACCGCATC+AGG | + | chr3.3:62197899-62197918 | None:intergenic | 55.0% | |
| ATACCCAGAAGTGGACGTGG+CGG | - | chr3.3:62196671-62196690 | MS.gene008015:CDS | 55.0% | |
| ATCTGTGGGCTTGGCATGTG+TGG | + | chr3.3:62199201-62199220 | None:intergenic | 55.0% | |
| CAAACAAGAGGCAACCACCC+AGG | - | chr3.3:62199157-62199176 | MS.gene008015:CDS | 55.0% | |
| CGCACTCACGCGTGAAATCA+AGG | - | chr3.3:62197913-62197932 | MS.gene008015:intron | 55.0% | |
| CTCCCCAGCCATTGAAACTC+AGG | - | chr3.3:62198032-62198051 | MS.gene008015:intron | 55.0% | |
| CTGCCCTGAGTTTCAATGGC+TGG | + | chr3.3:62198039-62198058 | None:intergenic | 55.0% | |
| CTGGGTGGTTGCCTCTTGTT+TGG | + | chr3.3:62199159-62199178 | None:intergenic | 55.0% | |
| GCCCTGAGTTTCAATGGCTG+GGG | + | chr3.3:62198037-62198056 | None:intergenic | 55.0% | |
| GGACACGTAAGCACCCATGT+CGG | + | chr3.3:62196721-62196740 | None:intergenic | 55.0% | |
| GGTGAAGAACATCGCCGACA+TGG | - | chr3.3:62196704-62196723 | MS.gene008015:CDS | 55.0% | |
| GTGGTGAGCACATAAAGCGG+GGG | + | chr3.3:62198280-62198299 | None:intergenic | 55.0% | |
| TCTGTGGGCTTGGCATGTGT+GGG | + | chr3.3:62199200-62199219 | None:intergenic | 55.0% | |
| TGGTCGAATCGAACCGGTGA+TGG | - | chr3.3:62196830-62196849 | MS.gene008015:intron | 55.0% | |
| TTTGCAGGAGGCAATGCGGA+AGG | - | chr3.3:62198204-62198223 | MS.gene008015:intron | 55.0% | |
| ! | GCGCAACCTGTTTTCCCATG+GGG | + | chr3.3:62199233-62199252 | None:intergenic | 55.0% |
| ! | GGCGAGGTTGATCTGGACAA+TGG | - | chr3.3:62200734-62200753 | MS.gene008015:CDS | 55.0% |
| ! | GGTGGTTGCCTCTTGTTTGG+TGG | + | chr3.3:62199156-62199175 | None:intergenic | 55.0% |
| ! | TGGAATGGGCGAGGTTGATC+TGG | - | chr3.3:62200727-62200746 | MS.gene008015:CDS | 55.0% |
| ! | TGGCTTTGCAGGAGGCAATG+CGG | - | chr3.3:62198200-62198219 | MS.gene008015:intron | 55.0% |
| !!! | CCCCCGGAGTTGCTGTTTTT+TGG | + | chr3.3:62199062-62199081 | None:intergenic | 55.0% |
| !!! | CTGTTGTGTTTTGGCCTGGG+TGG | + | chr3.3:62199174-62199193 | None:intergenic | 55.0% |
| ACAGATCTCTCCTGGCCCCA+TGG | - | chr3.3:62199215-62199234 | MS.gene008015:intron | 60.0% | |
| AGTGGATGTGGAGCAGCTGG+TGG | + | chr3.3:62199332-62199351 | None:intergenic | 60.0% | |
| ATCACCGCCACGTCCACTTC+TGG | + | chr3.3:62196678-62196697 | None:intergenic | 60.0% | |
| ATGCGGAAGGCTGAAGCTGC+TGG | - | chr3.3:62198217-62198236 | MS.gene008015:intron | 60.0% | |
| ATGGGGCCAGGAGAGATCTG+TGG | + | chr3.3:62199216-62199235 | None:intergenic | 60.0% | |
| CAGATCTCTCCTGGCCCCAT+GGG | - | chr3.3:62199216-62199235 | MS.gene008015:intron | 60.0% | |
| CCAAGCCCACAGATCTCTCC+TGG | - | chr3.3:62199207-62199226 | MS.gene008015:intron | 60.0% | |
| CCAGGAGAGATCTGTGGGCT+TGG | + | chr3.3:62199210-62199229 | None:intergenic | 60.0% | |
| GGACGTGGCGGTGATGATTC+AGG | - | chr3.3:62196683-62196702 | MS.gene008015:CDS | 60.0% | |
| TCACCGCCACGTCCACTTCT+GGG | + | chr3.3:62196677-62196696 | None:intergenic | 60.0% | |
| TCCTGGCCCCATGGGAAAAC+AGG | - | chr3.3:62199224-62199243 | MS.gene008015:intron | 60.0% | |
| TGGGGCCAGGAGAGATCTGT+GGG | + | chr3.3:62199215-62199234 | None:intergenic | 60.0% | |
| ! | ACCTGTTTTCCCATGGGGCC+AGG | + | chr3.3:62199228-62199247 | None:intergenic | 60.0% |
| ! | GCTAGTGGATGTGGAGCAGC+TGG | + | chr3.3:62199335-62199354 | None:intergenic | 60.0% |
| TCCGGGGGACCGTCAGCAAC+CGG | - | chr3.3:62199074-62199093 | MS.gene008015:intron | 70.0% | |
| CCCGGTTGCTGACGGTCCCC+CGG | + | chr3.3:62199078-62199097 | None:intergenic | 75.0% | |
| CCGGGGGACCGTCAGCAACC+GGG | - | chr3.3:62199075-62199094 | MS.gene008015:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 62196633 | 62200775 | 62196633 | ID=MS.gene008015 |
| chr3.3 | mRNA | 62196633 | 62200775 | 62196633 | ID=MS.gene008015.t1;Parent=MS.gene008015 |
| chr3.3 | exon | 62200401 | 62200775 | 62200401 | ID=MS.gene008015.t1.exon1;Parent=MS.gene008015.t1 |
| chr3.3 | CDS | 62200401 | 62200775 | 62200401 | ID=cds.MS.gene008015.t1;Parent=MS.gene008015.t1 |
| chr3.3 | exon | 62200249 | 62200305 | 62200249 | ID=MS.gene008015.t1.exon2;Parent=MS.gene008015.t1 |
| chr3.3 | CDS | 62200249 | 62200305 | 62200249 | ID=cds.MS.gene008015.t1;Parent=MS.gene008015.t1 |
| chr3.3 | exon | 62199303 | 62199536 | 62199303 | ID=MS.gene008015.t1.exon3;Parent=MS.gene008015.t1 |
| chr3.3 | CDS | 62199303 | 62199536 | 62199303 | ID=cds.MS.gene008015.t1;Parent=MS.gene008015.t1 |
| chr3.3 | exon | 62199093 | 62199197 | 62199093 | ID=MS.gene008015.t1.exon4;Parent=MS.gene008015.t1 |
| chr3.3 | CDS | 62199093 | 62199197 | 62199093 | ID=cds.MS.gene008015.t1;Parent=MS.gene008015.t1 |
| chr3.3 | exon | 62197247 | 62197345 | 62197247 | ID=MS.gene008015.t1.exon5;Parent=MS.gene008015.t1 |
| chr3.3 | CDS | 62197247 | 62197345 | 62197247 | ID=cds.MS.gene008015.t1;Parent=MS.gene008015.t1 |
| chr3.3 | exon | 62196633 | 62196785 | 62196633 | ID=MS.gene008015.t1.exon6;Parent=MS.gene008015.t1 |
| chr3.3 | CDS | 62196633 | 62196785 | 62196633 | ID=cds.MS.gene008015.t1;Parent=MS.gene008015.t1 |
| Gene Sequence |
| Protein sequence |
