AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05791

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05791.t1 MTR_2g018260 94.690 226 11 1 1 226 1 225 6.52e-162 446
MS.gene05791.t1 MTR_1g045130 54.237 177 78 2 51 226 31 205 9.26e-66 202
MS.gene05791.t1 MTR_6g029230 36.478 159 99 1 41 199 40 196 3.56e-35 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05791.t1 AT4G18040 61.983 242 69 2 1 226 1 235 2.90e-107 308
MS.gene05791.t1 AT1G29550 55.187 241 92 3 1 226 1 240 1.17e-92 272
MS.gene05791.t1 AT1G29590 54.772 241 93 3 1 226 1 240 5.91e-92 270
MS.gene05791.t1 AT5G35620 47.644 191 92 5 31 215 5 193 5.37e-57 179
MS.gene05791.t1 AT5G35620 47.644 191 92 5 31 215 5 193 5.37e-57 179
MS.gene05791.t1 AT5G35620 47.531 162 77 5 31 186 5 164 4.58e-46 150
MS.gene05791.t1 AT5G18110 36.913 149 94 0 51 199 43 191 8.18e-31 113

Find 52 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGAATTCTTGGACTTTC+TGG 0.032991 2.3:+68071830 MS.gene05791:CDS
TGATCGTCGTTGATGGATTT+TGG 0.121670 2.3:-68071691 None:intergenic
CAAATAGGGTCTTCCCATTT+TGG 0.162249 2.3:-68072933 None:intergenic
CTCACCCTCTTGAGAATTCT+TGG 0.186379 2.3:+68071821 MS.gene05791:CDS
AGCATAAGATTAAACCAAAA+TGG 0.226518 2.3:+68072919 MS.gene05791:CDS
TTTCTACTGTTGAAGAGTTT+TGG 0.246017 2.3:+68071920 MS.gene05791:CDS
TTTCCACCATTAGCACAAAT+AGG 0.313249 2.3:-68072948 None:intergenic
ACTACCCCAAGCTTGACTTT+TGG 0.352217 2.3:-68071875 None:intergenic
GTGACCAGCGGTGAGGGGTT+TGG 0.356180 2.3:-68071794 None:intergenic
CTTTAGTTGTTGGCAATGAT+TGG 0.357757 2.3:+68073122 MS.gene05791:intron
TTCCACCATTAGCACAAATA+GGG 0.371291 2.3:-68072947 None:intergenic
TGTGATTTGATCGTCGTTGA+TGG 0.385098 2.3:-68071698 None:intergenic
CAGTTGTGAATGTCAGGAAT+AGG 0.393268 2.3:+68073180 MS.gene05791:CDS
TAGATCCAAAAGTCAAGCTT+GGG 0.410080 2.3:+68071870 MS.gene05791:CDS
TGATACTAGCTGGTTGTATA+CGG 0.414513 2.3:+68073001 MS.gene05791:CDS
TTTGTGCTAATGGTGGAAAA+TGG 0.417291 2.3:+68072952 MS.gene05791:CDS
AGCGGTGAGGGGTTTGGAAA+TGG 0.424738 2.3:-68071788 None:intergenic
AATTCTCAAGAGGGTGAGAT+TGG 0.439429 2.3:-68071816 None:intergenic
TGCTGCTAATGAAGCTGCTC+AGG 0.454593 2.3:+68073232 MS.gene05791:CDS
CTTGATTATAATGAAACCAT+TGG 0.456939 2.3:+68074230 MS.gene05791:CDS
GCATAAGATTAAACCAAAAT+GGG 0.459310 2.3:+68072920 MS.gene05791:CDS
TAATCTTATGCTTGAAACAA+TGG 0.462435 2.3:-68072908 None:intergenic
GATCATGGAGATGAAATTTG+TGG 0.479695 2.3:+68073155 MS.gene05791:CDS
ATTGGAGAGCAATTTGATCA+TGG 0.480040 2.3:+68073140 MS.gene05791:CDS
AGTTGTGAATGTCAGGAATA+GGG 0.485043 2.3:+68073181 MS.gene05791:CDS
AGATTGGTGACCAGCGGTGA+GGG 0.491646 2.3:-68071800 None:intergenic
GCTCCAACAGCCGACTTGCT+AGG 0.494752 2.3:-68072879 None:intergenic
GTGGAGCAGTTGTGAATGTC+AGG 0.501928 2.3:+68073174 MS.gene05791:CDS
GAAGACCCTATTTGTGCTAA+TGG 0.505377 2.3:+68072942 MS.gene05791:CDS
CTAGATCCAAAAGTCAAGCT+TGG 0.513357 2.3:+68071869 MS.gene05791:CDS
GTTATATTTCAGATGAGCAT+CGG 0.524149 2.3:+68074188 MS.gene05791:intron
AACAGTAGAAAGAGTGTAGA+CGG 0.531049 2.3:-68071908 None:intergenic
CATCCTAGCAAGTCGGCTGT+TGG 0.531545 2.3:+68072876 MS.gene05791:CDS
GGGGAAAATCTGATACTAGC+TGG 0.537034 2.3:+68072991 MS.gene05791:CDS
ATTTCCAAACCCCTCACCGC+TGG 0.539864 2.3:+68071790 MS.gene05791:CDS
CAACAGCCGACTTGCTAGGA+TGG 0.540885 2.3:-68072875 None:intergenic
ATCAACAACGATCTCGAAGA+AGG 0.542418 2.3:+68071739 MS.gene05791:CDS
GAGATTGGTGACCAGCGGTG+AGG 0.566288 2.3:-68071801 None:intergenic
TACATGAAATATAAAGCCAA+TGG 0.568932 2.3:-68074246 None:intergenic
GAGGGGTTTGGAAATGGCGG+AGG 0.595654 2.3:-68071782 None:intergenic
GAGCATCGGAAAACAATGGA+AGG 0.597596 2.3:+68074202 MS.gene05791:CDS
GACCCTATTTGTGCTAATGG+TGG 0.605399 2.3:+68072945 MS.gene05791:CDS
GGTGAGGGGTTTGGAAATGG+CGG 0.611632 2.3:-68071785 None:intergenic
AGATGAGCATCGGAAAACAA+TGG 0.613189 2.3:+68074198 MS.gene05791:intron
GATTGGTGACCAGCGGTGAG+GGG 0.625908 2.3:-68071799 None:intergenic
ACAGTAGAAAGAGTGTAGAC+GGG 0.636590 2.3:-68071907 None:intergenic
AAAGTCCAAGAATTCTCAAG+AGG 0.638231 2.3:-68071826 None:intergenic
AAGTCCAAGAATTCTCAAGA+GGG 0.640086 2.3:-68071825 None:intergenic
CATTCACCATCCTAGCAAGT+CGG 0.648679 2.3:+68072869 MS.gene05791:CDS
AGGGTGAGATTGGTGACCAG+CGG 0.670042 2.3:-68071806 None:intergenic
TGTGAATGTCAGGAATAGGG+TGG 0.682592 2.3:+68073184 MS.gene05791:CDS
AGATCCAAAAGTCAAGCTTG+GGG 0.722448 2.3:+68071871 MS.gene05791:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGTTGAAGAATTTTTT+AGG + chr2.3:68072145-68072164 MS.gene05791:intron 15.0%
!!! AAGATTCATTTTTTATTTCT+TGG + chr2.3:68072019-68072038 MS.gene05791:intron 15.0%
!!! AGATTCATTTTTTATTTCTT+GGG + chr2.3:68072020-68072039 MS.gene05791:intron 15.0%
!!! ATTTTTGTTTCTTATTTTCA+TGG + chr2.3:68072825-68072844 MS.gene05791:intron 15.0%
!!! TATGATTCAGTATTATTTTT+TGG + chr2.3:68073958-68073977 MS.gene05791:intron 15.0%
!!! TGATTCATTTTTAGTTAATT+GGG + chr2.3:68072108-68072127 MS.gene05791:intron 15.0%
!! AATTGTAAACAATAAGGTAT+TGG - chr2.3:68073486-68073505 None:intergenic 20.0%
!! AGTTTGAATTGTAAACAATA+AGG - chr2.3:68073492-68073511 None:intergenic 20.0%
!! ATTTCTATAAGCTATATTTG+AGG + chr2.3:68072345-68072364 MS.gene05791:intron 20.0%
!! GAATTAGATGGTTATTATAA+TGG + chr2.3:68073374-68073393 MS.gene05791:intron 20.0%
!! GATTGAGAATTTATATTTCA+GGG + chr2.3:68073874-68073893 MS.gene05791:intron 20.0%
!! TGATTGAGAATTTATATTTC+AGG + chr2.3:68073873-68073892 MS.gene05791:intron 20.0%
!! TTCCATATAATTTACTCTTA+TGG + chr2.3:68074056-68074075 MS.gene05791:intron 20.0%
!! TTTATAGACTTTGTTCAATT+TGG + chr2.3:68073749-68073768 MS.gene05791:intron 20.0%
!!! AAGATTCAGTTTTTATGAAT+TGG + chr2.3:68072447-68072466 MS.gene05791:intron 20.0%
!!! AATTCTATCTTTTTCACTTT+TGG + chr2.3:68071950-68071969 MS.gene05791:intron 20.0%
!!! AATTGGGTATTTTTTACATT+AGG + chr2.3:68072080-68072099 MS.gene05791:intron 20.0%
!!! ACAATGTTGTAGAATTTTTT+AGG + chr2.3:68072529-68072548 MS.gene05791:intron 20.0%
!!! ACTGATTATACTTTTGATAA+TGG + chr2.3:68074142-68074161 MS.gene05791:intron 20.0%
!!! AGATTCAGTTTTTATGAATT+GGG + chr2.3:68072448-68072467 MS.gene05791:intron 20.0%
!!! ATTGGGTATTTTTTACATTA+GGG + chr2.3:68072081-68072100 MS.gene05791:intron 20.0%
!!! ATTGTAAACAATAAGGTATT+GGG - chr2.3:68073485-68073504 None:intergenic 20.0%
!!! ATTGTTCATTTATTGATTCT+TGG + chr2.3:68072800-68072819 MS.gene05791:intron 20.0%
!!! CTATTGAATTTGTTTTATGA+GGG + chr2.3:68073028-68073047 MS.gene05791:intron 20.0%
!!! CTGATTATACTTTTGATAAT+GGG + chr2.3:68074143-68074162 MS.gene05791:intron 20.0%
!!! CTTGATTATTTTTGTATCTT+GGG + chr2.3:68072693-68072712 MS.gene05791:intron 20.0%
!!! GTGATTCATTTTTAGTTAAT+TGG + chr2.3:68072107-68072126 MS.gene05791:intron 20.0%
!!! TCTTGATTATTTTTGTATCT+TGG + chr2.3:68072692-68072711 MS.gene05791:intron 20.0%
!!! TGATGAATTAAAGTACTAAT+TGG + chr2.3:68073072-68073091 MS.gene05791:intron 20.0%
!!! TGATTATACTTTTGATAATG+GGG + chr2.3:68074144-68074163 MS.gene05791:intron 20.0%
!!! TTTTCAACTTTAGATCTTTT+GGG + chr2.3:68072766-68072785 MS.gene05791:intron 20.0%
! AACCATCTAATTCTTTCTTT+GGG - chr2.3:68073367-68073386 None:intergenic 25.0%
! ACAATTCAAAACAGAAGTTA+GGG - chr2.3:68074337-68074356 None:intergenic 25.0%
! ACTAAATTGATAGACCAAAA+AGG - chr2.3:68073836-68073855 None:intergenic 25.0%
! AGCATAAGATTAAACCAAAA+TGG + chr2.3:68072919-68072938 MS.gene05791:CDS 25.0%
! AGCCATAAGAGTAAATTATA+TGG - chr2.3:68074061-68074080 None:intergenic 25.0%
! CAGTTCATGAACAATTTAAA+TGG + chr2.3:68073411-68073430 MS.gene05791:intron 25.0%
! CTTGATTATAATGAAACCAT+TGG + chr2.3:68074230-68074249 MS.gene05791:CDS 25.0%
! GCATAAGATTAAACCAAAAT+GGG + chr2.3:68072920-68072939 MS.gene05791:CDS 25.0%
! TAACCATCTAATTCTTTCTT+TGG - chr2.3:68073368-68073387 None:intergenic 25.0%
! TAATCTTATGCTTGAAACAA+TGG - chr2.3:68072911-68072930 None:intergenic 25.0%
! TACATGAAATATAAAGCCAA+TGG - chr2.3:68074249-68074268 None:intergenic 25.0%
! TATGCAATCTTATACAAAAG+CGG - chr2.3:68072267-68072286 None:intergenic 25.0%
! TGACAAATATAAAAACACAC+CGG - chr2.3:68074299-68074318 None:intergenic 25.0%
! TTTGAGGACTTATGAAAATA+AGG + chr2.3:68072361-68072380 MS.gene05791:intron 25.0%
!! AAAATGTTGCAGAAATTTTG+AGG + chr2.3:68072730-68072749 MS.gene05791:intron 25.0%
!! AAGATTCAGTTTTTGTGAAT+TGG + chr2.3:68072063-68072082 MS.gene05791:intron 25.0%
!! AATTGGGTATTTTTCACATT+AGG + chr2.3:68072464-68072483 MS.gene05791:intron 25.0%
!! AGATTCAGTTTTTGTGAATT+GGG + chr2.3:68072064-68072083 MS.gene05791:intron 25.0%
!! ATTGGGTATTTTTCACATTA+GGG + chr2.3:68072465-68072484 MS.gene05791:intron 25.0%
!! CTTTTCAACTTTAGATCTTT+TGG + chr2.3:68072765-68072784 MS.gene05791:intron 25.0%
!! GTTTTTCATCAATACCTTAT+TGG + chr2.3:68073695-68073714 MS.gene05791:intron 25.0%
!!! AATTGTTCATTTGTTGTTCT+TGG + chr2.3:68071991-68072010 MS.gene05791:intron 25.0%
!!! GCTATTGAATTTGTTTTATG+AGG + chr2.3:68073027-68073046 MS.gene05791:intron 25.0%
!!! TCTTGGGTGTTTTTAATTTT+GGG + chr2.3:68072036-68072055 MS.gene05791:intron 25.0%
!!! TTCTTGGGTGTTTTTAATTT+TGG + chr2.3:68072035-68072054 MS.gene05791:intron 25.0%
!!! TTTTAAAATTGCTGAGTGTT+AGG - chr2.3:68073931-68073950 None:intergenic 25.0%
AACTTCAGAGACTATATTAG+TGG - chr2.3:68073731-68073750 None:intergenic 30.0%
AATAAGCTCTTTATCCAAAC+AGG - chr2.3:68072199-68072218 None:intergenic 30.0%
ACCATCTAATTCTTTCTTTG+GGG - chr2.3:68073366-68073385 None:intergenic 30.0%
ATGAGCAGTTGTTATATGAA+TGG + chr2.3:68073558-68073577 MS.gene05791:intron 30.0%
CACAATTCAAAACAGAAGTT+AGG - chr2.3:68074338-68074357 None:intergenic 30.0%
CAGTTCATCAGCTATTTAAA+TGG + chr2.3:68073630-68073649 MS.gene05791:intron 30.0%
GGGTGGAAAAAATTTCTATT+TGG + chr2.3:68073201-68073220 MS.gene05791:CDS 30.0%
GTTATATTTCAGATGAGCAT+CGG + chr2.3:68074188-68074207 MS.gene05791:intron 30.0%
TGATGAAAAACAAGAAACAC+AGG - chr2.3:68073686-68073705 None:intergenic 30.0%
TTGAATCAATAGGAACTAGA+TGG + chr2.3:68073274-68073293 MS.gene05791:intron 30.0%
! AACTCTTGTAATTTGTCAGA+TGG + chr2.3:68073995-68074014 MS.gene05791:intron 30.0%
! AGCTTCAATCTTTTCACTTT+AGG + chr2.3:68072171-68072190 MS.gene05791:intron 30.0%
! GCTTCAATCTTTTCACTTTA+GGG + chr2.3:68072172-68072191 MS.gene05791:intron 30.0%
! GGCTTTATATTTCATGTAAG+TGG + chr2.3:68074251-68074270 MS.gene05791:intron 30.0%
! TGGAAAGTTTTCACGTTTTT+TGG + chr2.3:68073650-68073669 MS.gene05791:intron 30.0%
! TGTTGATGTCTTCGATTTTA+GGG - chr2.3:68071726-68071745 None:intergenic 30.0%
! TTCTTGGTAACTTTAGTTGT+TGG + chr2.3:68073112-68073131 MS.gene05791:intron 30.0%
! TTGAGGATTTTCAATATCAG+AGG - chr2.3:68073804-68073823 None:intergenic 30.0%
! TTGTTGATGTCTTCGATTTT+AGG - chr2.3:68071727-68071746 None:intergenic 30.0%
! TTTCTACTGTTGAAGAGTTT+TGG + chr2.3:68071920-68071939 MS.gene05791:CDS 30.0%
!! AATCTTTTGAGAGACTGTTT+AGG - chr2.3:68072433-68072452 None:intergenic 30.0%
!! GTTCCTACTTTTGAATCAAT+AGG + chr2.3:68073264-68073283 MS.gene05791:intron 30.0%
!! GTTCCTATTGATTCAAAAGT+AGG - chr2.3:68073270-68073289 None:intergenic 30.0%
!! TTGAATTGTGCTATTTCTGT+AGG + chr2.3:68074348-68074367 MS.gene05791:intron 30.0%
AAAGTCCAAGAATTCTCAAG+AGG - chr2.3:68071829-68071848 None:intergenic 35.0%
AAGTCCAAGAATTCTCAAGA+GGG - chr2.3:68071828-68071847 None:intergenic 35.0%
ACCCCAAAGAAAGAATTAGA+TGG + chr2.3:68073362-68073381 MS.gene05791:intron 35.0%
AGTTGTGAATGTCAGGAATA+GGG + chr2.3:68073181-68073200 MS.gene05791:CDS 35.0%
ATATAACAACTGCTCATCGT+TGG - chr2.3:68073555-68073574 None:intergenic 35.0%
ATTGGAGAGCAATTTGATCA+TGG + chr2.3:68073140-68073159 MS.gene05791:CDS 35.0%
CAAAAAGGTCTAACTGATTG+AGG - chr2.3:68073821-68073840 None:intergenic 35.0%
CAAGCATAAACAGATGCATA+TGG - chr2.3:68074101-68074120 None:intergenic 35.0%
CAGATGCATATGGTAATTTC+TGG - chr2.3:68074091-68074110 None:intergenic 35.0%
CTTTAGTTGTTGGCAATGAT+TGG + chr2.3:68073122-68073141 MS.gene05791:intron 35.0%
GAGGACTTATGAAAATAAGG+TGG + chr2.3:68072364-68072383 MS.gene05791:intron 35.0%
GATCATGGAGATGAAATTTG+TGG + chr2.3:68073155-68073174 MS.gene05791:CDS 35.0%
TAGATCCAAAAGTCAAGCTT+GGG + chr2.3:68071870-68071889 MS.gene05791:CDS 35.0%
TGATACTAGCTGGTTGTATA+CGG + chr2.3:68073001-68073020 MS.gene05791:CDS 35.0%
TTCCACCATTAGCACAAATA+GGG - chr2.3:68072950-68072969 None:intergenic 35.0%
TTGAGAATTCTTGGACTTTC+TGG + chr2.3:68071830-68071849 MS.gene05791:CDS 35.0%
TTTCCACCATTAGCACAAAT+AGG - chr2.3:68072951-68072970 None:intergenic 35.0%
! AACAGTAGAAAGAGTGTAGA+CGG - chr2.3:68071911-68071930 None:intergenic 35.0%
! AGCTTCGATCTTTTCACTTT+AGG + chr2.3:68072555-68072574 MS.gene05791:intron 35.0%
! CTCAATCAGTTAGACCTTTT+TGG + chr2.3:68073819-68073838 MS.gene05791:intron 35.0%
! GCTTCGATCTTTTCACTTTA+GGG + chr2.3:68072556-68072575 MS.gene05791:intron 35.0%
! TTTGTGCTAATGGTGGAAAA+TGG + chr2.3:68072952-68072971 MS.gene05791:CDS 35.0%
!! ATGGACTGTGCAATTTTCTA+GGG + chr2.3:68072971-68072990 MS.gene05791:CDS 35.0%
!! CATGTGTGTGTTTTTGTTCT+TGG + chr2.3:68073096-68073115 MS.gene05791:intron 35.0%
!! CTTTTTCACTTTTGGTCTTC+TGG + chr2.3:68071958-68071977 MS.gene05791:intron 35.0%
!!! AATGGACTGTGCAATTTTCT+AGG + chr2.3:68072970-68072989 MS.gene05791:CDS 35.0%
AATTCTCAAGAGGGTGAGAT+TGG - chr2.3:68071819-68071838 None:intergenic 40.0%
AGATCCAAAAGTCAAGCTTG+GGG + chr2.3:68071871-68071890 MS.gene05791:CDS 40.0%
ATCAACAACGATCTCGAAGA+AGG + chr2.3:68071739-68071758 MS.gene05791:CDS 40.0%
CAGTTGTGAATGTCAGGAAT+AGG + chr2.3:68073180-68073199 MS.gene05791:CDS 40.0%
CTAGATCCAAAAGTCAAGCT+TGG + chr2.3:68071869-68071888 MS.gene05791:CDS 40.0%
GAAGACCCTATTTGTGCTAA+TGG + chr2.3:68072942-68072961 MS.gene05791:CDS 40.0%
GTGGTTCACTCTAACCAATA+AGG - chr2.3:68073712-68073731 None:intergenic 40.0%
TGGGAGAAAACAAGAAACAC+AGG - chr2.3:68073466-68073485 None:intergenic 40.0%
TGTGATTTGATCGTCGTTGA+TGG - chr2.3:68071701-68071720 None:intergenic 40.0%
! ACAGTAGAAAGAGTGTAGAC+GGG - chr2.3:68071910-68071929 None:intergenic 40.0%
! CAAATAGGGTCTTCCCATTT+TGG - chr2.3:68072936-68072955 None:intergenic 40.0%
! TGGACTGTGCAATTTTCTAG+GGG + chr2.3:68072972-68072991 MS.gene05791:CDS 40.0%
! TTTCACTTTAGGGACCTGTT+TGG + chr2.3:68072182-68072201 MS.gene05791:intron 40.0%
!! AGATGAGCATCGGAAAACAA+TGG + chr2.3:68074198-68074217 MS.gene05791:intron 40.0%
!! CTACTGTTGAAGAGTTTTGG+AGG + chr2.3:68071923-68071942 MS.gene05791:CDS 40.0%
!! GACTTTTGGATCTAGCTTGA+GGG - chr2.3:68071864-68071883 None:intergenic 40.0%
!! TGACTTTTGGATCTAGCTTG+AGG - chr2.3:68071865-68071884 None:intergenic 40.0%
!! TTGCCTGTGTGTTTTTATGC+CGG + chr2.3:68074277-68074296 MS.gene05791:intron 40.0%
!!! ATCGTCGTTGATGGATTTTG+GGG - chr2.3:68071692-68071711 None:intergenic 40.0%
!!! GATCGTCGTTGATGGATTTT+GGG - chr2.3:68071693-68071712 None:intergenic 40.0%
!!! TGATCGTCGTTGATGGATTT+TGG - chr2.3:68071694-68071713 None:intergenic 40.0%
ACACCGGCATAAAAACACAC+AGG - chr2.3:68074283-68074302 None:intergenic 45.0%
ACTAGCTGGTTGTATACGGT+AGG + chr2.3:68073005-68073024 MS.gene05791:intron 45.0%
CATTCACCATCCTAGCAAGT+CGG + chr2.3:68072869-68072888 MS.gene05791:CDS 45.0%
CTCACCCTCTTGAGAATTCT+TGG + chr2.3:68071821-68071840 MS.gene05791:CDS 45.0%
GACCCTATTTGTGCTAATGG+TGG + chr2.3:68072945-68072964 MS.gene05791:CDS 45.0%
GCATCTGTTTATGCTTGTGC+TGG + chr2.3:68074104-68074123 MS.gene05791:intron 45.0%
GGGGAAAATCTGATACTAGC+TGG + chr2.3:68072991-68073010 MS.gene05791:CDS 45.0%
TGTGAATGTCAGGAATAGGG+TGG + chr2.3:68073184-68073203 MS.gene05791:CDS 45.0%
! ACTACCCCAAGCTTGACTTT+TGG - chr2.3:68071878-68071897 None:intergenic 45.0%
!! GAGCATCGGAAAACAATGGA+AGG + chr2.3:68074202-68074221 MS.gene05791:CDS 45.0%
GTGGAGCAGTTGTGAATGTC+AGG + chr2.3:68073174-68073193 MS.gene05791:CDS 50.0%
TGCTGCTAATGAAGCTGCTC+AGG + chr2.3:68073232-68073251 MS.gene05791:CDS 50.0%
AGCGGTGAGGGGTTTGGAAA+TGG - chr2.3:68071791-68071810 None:intergenic 55.0%
ATTTCCAAACCCCTCACCGC+TGG + chr2.3:68071790-68071809 MS.gene05791:CDS 55.0%
CATCCTAGCAAGTCGGCTGT+TGG + chr2.3:68072876-68072895 MS.gene05791:CDS 55.0%
GGTGAGGGGTTTGGAAATGG+CGG - chr2.3:68071788-68071807 None:intergenic 55.0%
! AGATTGGTGACCAGCGGTGA+GGG - chr2.3:68071803-68071822 None:intergenic 55.0%
! AGGGTGAGATTGGTGACCAG+CGG - chr2.3:68071809-68071828 None:intergenic 55.0%
!! CAACAGCCGACTTGCTAGGA+TGG - chr2.3:68072878-68072897 None:intergenic 55.0%
GAGGGGTTTGGAAATGGCGG+AGG - chr2.3:68071785-68071804 None:intergenic 60.0%
! GAGATTGGTGACCAGCGGTG+AGG - chr2.3:68071804-68071823 None:intergenic 60.0%
! GATTGGTGACCAGCGGTGAG+GGG - chr2.3:68071802-68071821 None:intergenic 60.0%
!! GCTCCAACAGCCGACTTGCT+AGG - chr2.3:68072882-68072901 None:intergenic 60.0%
GTGACCAGCGGTGAGGGGTT+TGG - chr2.3:68071797-68071816 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 68071673 68074420 68071673 ID=MS.gene05791
chr2.3 mRNA 68071673 68074420 68071673 ID=MS.gene05791.t1;Parent=MS.gene05791
chr2.3 exon 68071673 68071944 68071673 ID=MS.gene05791.t1.exon1;Parent=MS.gene05791.t1
chr2.3 CDS 68071673 68071944 68071673 ID=cds.MS.gene05791.t1;Parent=MS.gene05791.t1
chr2.3 exon 68072857 68073022 68072857 ID=MS.gene05791.t1.exon2;Parent=MS.gene05791.t1
chr2.3 CDS 68072857 68073022 68072857 ID=cds.MS.gene05791.t1;Parent=MS.gene05791.t1
chr2.3 exon 68073128 68073253 68073128 ID=MS.gene05791.t1.exon3;Parent=MS.gene05791.t1
chr2.3 CDS 68073128 68073253 68073128 ID=cds.MS.gene05791.t1;Parent=MS.gene05791.t1
chr2.3 exon 68074200 68074265 68074200 ID=MS.gene05791.t1.exon4;Parent=MS.gene05791.t1
chr2.3 CDS 68074200 68074265 68074200 ID=cds.MS.gene05791.t1;Parent=MS.gene05791.t1
chr2.3 exon 68074370 68074420 68074370 ID=MS.gene05791.t1.exon5;Parent=MS.gene05791.t1
chr2.3 CDS 68074370 68074420 68074370 ID=cds.MS.gene05791.t1;Parent=MS.gene05791.t1
Gene Sequence

>MS.gene05791

ATGGTTGTAGAAGAAACCCCAAAATCCATCAACGACGATCAAATCACAAACCCTAAAATCGAAGACATCAACAACGATCTCGAAGAAGGAGAGATCGACGACGATGATTCCTCCGCCATTTCCAAACCCCTCACCGCTGGTCACCAATCTCACCCTCTTGAGAATTCTTGGACTTTCTGGTTCGATAACCCTCAAGCTAGATCCAAAAGTCAAGCTTGGGGTAGTTCGATTCGACCCGTCTACACTCTTTCTACTGTTGAAGAGTTTTGGAGGTAAAAATTCTATCTTTTTCACTTTTGGTCTTCTGGCTCTTGAAAAAATTGTTCATTTGTTGTTCTTGGATGAAAAGATTCATTTTTTATTTCTTGGGTGTTTTTAATTTTGGGTTAAAAGATTCAGTTTTTGTGAATTGGGTATTTTTTACATTAGGGTTTGTGATTCATTTTTAGTTAATTGGGCATTTCTTGTTTGTAAAATGTTGAAGAATTTTTTAGGTAAAGCTTCAATCTTTTCACTTTAGGGACCTGTTTGGATAAAGAGCTTATTTGCAGCTTATATTACAAGCGTTTATCAATATGCTTATCATGATATCCGCTTTTGTATAAGATTGCATAAGCTGTTTTATAGCAAAAAAATAATAACGCTGAATTGTTTTTTTATATGCTATAAGTTATTTCTATAAGCTATATTTGAGGACTTATGAAAATAAGGTGGAAAAAGCTTATGAAAATTGTCATAAGCTGTTTTCATAAATTCTCCTAAACAGTCTCTCAAAAGATTCAGTTTTTATGAATTGGGTATTTTTCACATTAGGGTTTGTGATTCATTTTTAGTTAATTGGGTATTTCTTGTTTGTACAATGTTGTAGAATTTTTTAGGTAAAGCTTCGATCTTTTCACTTTAGGGACCTGTTTGGATAAAGAGCTTATTTGCAGCATATATCACAAGCGTTTATTATGTGCTTATCATGATAAGCACTAATGTATAAGCTTGCATAAAAATATCGTTCATTTATTGTTTCTTGATTATTTTTGTATCTTGGGTATTTCTTGTTTGTAAAATGTTGCAGAAATTTTGAGGTAAAAATTCAATCTTTTCAACTTTAGATCTTTTGGGTCATCAAAAATATTGTTCATTTATTGATTCTTGGATATTTTTGTTTCTTATTTTCATGGTTTTTTCAGCATTTACAATAACATTCACCATCCTAGCAAGTCGGCTGTTGGAGCTGATTTCCATTGTTTCAAGCATAAGATTAAACCAAAATGGGAAGACCCTATTTGTGCTAATGGTGGAAAATGGACTGTGCAATTTTCTAGGGGAAAATCTGATACTAGCTGGTTGTATACGGTAGGCTATTGAATTTGTTTTATGAGGGTATTATTTTGATTATTCTTTGTGATGAATTAAAGTACTAATTGGTCATGTGTGTGTTTTTGTTCTTGGTAACTTTAGTTGTTGGCAATGATTGGAGAGCAATTTGATCATGGAGATGAAATTTGTGGAGCAGTTGTGAATGTCAGGAATAGGGTGGAAAAAATTTCTATTTGGACTAAGAATGCTGCTAATGAAGCTGCTCAGGTAATTTCTTGTTCCTACTTTTGAATCAATAGGAACTAGATGGTTATGATGTTGAAGAGTAATATTATGATTTTCAAACTAAAGATGTGCATTTGTTATGTGACTGAGACCCCAAAGAAAGAATTAGATGGTTATTATAATGGCATGTATTCAATCACAGTTCATGAACAATTTAAATGGACATTTTTCACATTTTTGTTGCTTCAATGCCTGTGTTTCTTGTTTTCTCCCAATACCTTATTGTTTACAATTCAAACTAGATGATTACTATAATGTTACAGATTATTGATTTTTCTAACCAACGATGAGCAGTTGTTATATGAATGGCTCATTCATATCATTGCTGTTAAATATGAATGTAAAAAGCATGTATTCACAGTTCATCAGCTATTTAAATGGAAAGTTTTCACGTTTTTTGGTTATTCAATGCCTGTGTTTCTTGTTTTTCATCAATACCTTATTGGTTAGAGTGAACCACTAATATAGTCTCTGAAGTTTATAGACTTTGTTCAATTTGGTATCTGTAATTTACAAAATTTCTTAATGACCTCTGATATTGAAAATCCTCAATCAGTTAGACCTTTTTGGTCTATCAATTTAGTCTGAAATCATCATAATGTGATTGAGAATTTATATTTCAGGGATCACTCTCGTGAATTTTATTGATTAAATTGCCTAACACTCAGCAATTTTAAAACTTAATTTATGATTCAGTATTATTTTTTGGTAGAAGAGAATTTAAACTCTTGTAATTTGTCAGATGGAGAATGAATGTGTGATTATTATACATATGCTGCGACAATTCCATATAATTTACTCTTATGGCTTGTGAGACCAGAAATTACCATATGCATCTGTTTATGCTTGTGCTGGTGTCTGTTTGAATTTACTGATTATACTTTTGATAATGGGGAACATATAAACTTAATTTTTTGTTATATTTCAGATGAGCATCGGAAAACAATGGAAGGAGTTTCTTGATTATAATGAAACCATTGGCTTTATATTTCATGTAAGTGGAACTTGCCTGTGTGTTTTTATGCCGGTGTGTTTTTATATTTGTCACTTCATCTTAAATCACCCTAACTTCTGTTTTGAATTGTGCTATTTCTGTAGGATGATGCAAAGAAGCTCGACAGAGCAGCTAAAAACAAATATGTTGTATGA
Protein sequence

>MS.gene05791.t1

MVVEETPKSINDDQITNPKIEDINNDLEEGEIDDDDSSAISKPLTAGHQSHPLENSWTFWFDNPQARSKSQAWGSSIRPVYTLSTVEEFWSIYNNIHHPSKSAVGADFHCFKHKIKPKWEDPICANGGKWTVQFSRGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRNRVEKISIWTKNAANEAAQMSIGKQWKEFLDYNETIGFIFHDDAKKLDRAAKNKYVV