Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002676.t1 | XP_003593833.1 | 91.6 | 226 | 18 | 1 | 1 | 226 | 1 | 225 | 5.50E-120 | 440.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002676.t1 | O23252 | 65.2 | 233 | 72 | 3 | 1 | 224 | 1 | 233 | 5.3e-87 | 322.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002676.t1 | G7ILV7 | 91.6 | 226 | 18 | 1 | 1 | 226 | 1 | 225 | 4.0e-120 | 440.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059369 | MS.gene002676 | PPI |
| MS.gene002676 | MS.gene031933 | PPI |
| MS.gene002676 | MS.gene066996 | PPI |
| MS.gene002676 | MS.gene26467 | PPI |
| MS.gene002676 | MS.gene73500 | PPI |
| MS.gene002676 | MS.gene31729 | PPI |
| MS.gene002676 | MS.gene008015 | PPI |
| MS.gene002676 | MS.gene35157 | PPI |
| MS.gene67432 | MS.gene002676 | PPI |
| MS.gene002676 | MS.gene63795 | PPI |
| MS.gene002676 | MS.gene32419 | PPI |
| MS.gene002676 | MS.gene36492 | PPI |
| MS.gene002676 | MS.gene031932 | PPI |
| MS.gene002676 | MS.gene67431 | PPI |
| MS.gene028300 | MS.gene002676 | PPI |
| MS.gene002676 | MS.gene040015 | PPI |
| MS.gene002676 | MS.gene023154 | PPI |
| MS.gene002676 | MS.gene059371 | PPI |
| MS.gene059370 | MS.gene002676 | PPI |
| MS.gene002676 | MS.gene040016 | PPI |
| MS.gene002676 | MS.gene065547 | PPI |
| MS.gene002676 | MS.gene008016 | PPI |
| MS.gene002676 | MS.gene33879 | PPI |
| MS.gene002676 | MS.gene047859 | PPI |
| MS.gene26468 | MS.gene002676 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002676.t1 | MTR_2g018260 | 91.593 | 226 | 18 | 1 | 1 | 226 | 1 | 225 | 4.63e-156 | 431 |
| MS.gene002676.t1 | MTR_1g045130 | 51.412 | 177 | 83 | 2 | 51 | 226 | 31 | 205 | 5.01e-62 | 192 |
| MS.gene002676.t1 | MTR_6g029230 | 37.107 | 159 | 98 | 1 | 41 | 199 | 40 | 196 | 4.91e-35 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002676.t1 | AT4G18040 | 61.157 | 242 | 71 | 2 | 1 | 226 | 1 | 235 | 3.47e-105 | 303 |
| MS.gene002676.t1 | AT1G29590 | 54.357 | 241 | 94 | 3 | 1 | 226 | 1 | 240 | 3.64e-90 | 265 |
| MS.gene002676.t1 | AT1G29550 | 53.942 | 241 | 95 | 3 | 1 | 226 | 1 | 240 | 1.05e-89 | 264 |
| MS.gene002676.t1 | AT5G35620 | 48.370 | 184 | 87 | 5 | 38 | 215 | 12 | 193 | 5.29e-55 | 174 |
| MS.gene002676.t1 | AT5G35620 | 48.370 | 184 | 87 | 5 | 38 | 215 | 12 | 193 | 5.29e-55 | 174 |
| MS.gene002676.t1 | AT5G35620 | 46.914 | 162 | 78 | 5 | 31 | 186 | 5 | 164 | 2.05e-45 | 149 |
| MS.gene002676.t1 | AT5G18110 | 36.913 | 149 | 94 | 0 | 51 | 199 | 43 | 191 | 4.18e-30 | 111 |
Find 56 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAATTCTTGGACTTTC+TGG | 0.032991 | 2.1:+68388342 | MS.gene002676:CDS |
| TGATCGTCGTTGATGGATTT+TGG | 0.121670 | 2.1:-68388203 | None:intergenic |
| CAAATAGGGTCTTCCCATTT+TGG | 0.162249 | 2.1:-68389445 | None:intergenic |
| CTCACCCTCTTGAGAATTCT+TGG | 0.186379 | 2.1:+68388333 | MS.gene002676:CDS |
| AGCATAAGATTGAACCAAAA+TGG | 0.214116 | 2.1:+68389431 | MS.gene002676:CDS |
| AAGGGGTTTCTTGATTATAA+TGG | 0.289956 | 2.1:+68391662 | MS.gene002676:CDS |
| TTTCTACTGTTGAAGAGTTC+TGG | 0.298606 | 2.1:+68388432 | MS.gene002676:CDS |
| ACTACCCCACTCTTGACTTT+TGG | 0.310821 | 2.1:-68388387 | None:intergenic |
| TTTCCACCATTAGCACAAAT+AGG | 0.327320 | 2.1:-68389460 | None:intergenic |
| GTGACCGGCGGTGAGGGGTT+TGG | 0.329982 | 2.1:-68388306 | None:intergenic |
| GGGGTGAAAGAATTTCTATT+TGG | 0.340533 | 2.1:+68389713 | MS.gene002676:CDS |
| CTTTAGTTGTTGGCAATGAT+TGG | 0.357757 | 2.1:+68389634 | MS.gene002676:intron |
| AGATTGGTGACCGGCGGTGA+GGG | 0.372856 | 2.1:-68388312 | None:intergenic |
| TGTGATTTGATCGTCGTTGA+TGG | 0.385098 | 2.1:-68388210 | None:intergenic |
| GGCGGTGAGGGGTTTGGAAA+TGG | 0.408337 | 2.1:-68388300 | None:intergenic |
| TTCCACCATTAGCACAAATA+GGG | 0.408644 | 2.1:-68389459 | None:intergenic |
| TGATACTAGCTGGTTGTATA+CGG | 0.414513 | 2.1:+68389513 | MS.gene002676:CDS |
| CTTGATTATAATGGAACCAT+TGG | 0.423062 | 2.1:+68391671 | MS.gene002676:CDS |
| TTTGTGCTAATGGTGGAAAC+TGG | 0.431316 | 2.1:+68389464 | MS.gene002676:CDS |
| CATCCTAGCAAGTTGGCTCT+TGG | 0.433951 | 2.1:+68389388 | MS.gene002676:CDS |
| AATTCTCAAGAGGGTGAGAT+TGG | 0.439429 | 2.1:-68388328 | None:intergenic |
| TGCTGCTAATGAAGCTGCTC+AGG | 0.454593 | 2.1:+68389744 | MS.gene002676:CDS |
| GCATAAGATTGAACCAAAAT+GGG | 0.459310 | 2.1:+68389432 | MS.gene002676:CDS |
| CAATCTTATGCTTGAAACAA+TGG | 0.479043 | 2.1:-68389420 | None:intergenic |
| GATCATGGAGATGAAATTTG+TGG | 0.479695 | 2.1:+68389667 | MS.gene002676:CDS |
| ATTGGAGAGCAATTTGATCA+TGG | 0.480040 | 2.1:+68389652 | MS.gene002676:CDS |
| GTGGAGCAGTTGTGAATGTC+AGG | 0.501928 | 2.1:+68389686 | MS.gene002676:CDS |
| GAAGACCCTATTTGTGCTAA+TGG | 0.505377 | 2.1:+68389454 | MS.gene002676:CDS |
| CAGTTGTGAATGTCAGGAGT+AGG | 0.512901 | 2.1:+68389692 | MS.gene002676:CDS |
| GGTGAGGGGTTTGGAAATGG+CGG | 0.516008 | 2.1:-68388297 | None:intergenic |
| AGTTGTGAATGTCAGGAGTA+GGG | 0.523775 | 2.1:+68389693 | MS.gene002676:CDS |
| GTTATATTTCAGATGAGCAT+CGG | 0.524149 | 2.1:+68391629 | MS.gene002676:intron |
| CAAGAGCCAACTTGCTAGGA+TGG | 0.531957 | 2.1:-68389387 | None:intergenic |
| ATCAACAACGATCTTGAAGA+AGG | 0.534065 | 2.1:+68388251 | MS.gene002676:CDS |
| ACTCCAAGAGCCAACTTGCT+AGG | 0.540401 | 2.1:-68389391 | None:intergenic |
| GGGGAAAATCTGATACTAGC+TGG | 0.548407 | 2.1:+68389503 | MS.gene002676:CDS |
| CTAAAGCCAAAAGTCAAGAG+TGG | 0.560725 | 2.1:+68388381 | MS.gene002676:CDS |
| TAAAGCCAAAAGTCAAGAGT+GGG | 0.560892 | 2.1:+68388382 | MS.gene002676:CDS |
| GATTGGTGACCGGCGGTGAG+GGG | 0.563209 | 2.1:-68388311 | None:intergenic |
| GAGATTGGTGACCGGCGGTG+AGG | 0.563789 | 2.1:-68388313 | None:intergenic |
| CATTCACCATCCTAGCAAGT+TGG | 0.564197 | 2.1:+68389381 | MS.gene002676:CDS |
| ATTTCCAAACCCCTCACCGC+CGG | 0.575370 | 2.1:+68388302 | MS.gene002676:CDS |
| GAGCATCGGAAAACAATGGA+AGG | 0.577156 | 2.1:+68391643 | MS.gene002676:CDS |
| GAGGGGTTTGGAAATGGCGG+AGG | 0.595654 | 2.1:-68388294 | None:intergenic |
| GCATCGGAAAACAATGGAAG+GGG | 0.598233 | 2.1:+68391645 | MS.gene002676:CDS |
| TACATGAAATATAAAGCCAA+TGG | 0.599495 | 2.1:-68391687 | None:intergenic |
| GTTGTGAATGTCAGGAGTAG+GGG | 0.601232 | 2.1:+68389694 | MS.gene002676:CDS |
| GACCCTATTTGTGCTAATGG+TGG | 0.605399 | 2.1:+68389457 | MS.gene002676:CDS |
| CTACTGTTGAAGAGTTCTGG+AGG | 0.611273 | 2.1:+68388435 | MS.gene002676:CDS |
| AAGAGGGTGAGATTGGTGAC+CGG | 0.612893 | 2.1:-68388321 | None:intergenic |
| AGATGAGCATCGGAAAACAA+TGG | 0.613189 | 2.1:+68391639 | MS.gene002676:intron |
| AGCATCGGAAAACAATGGAA+GGG | 0.625778 | 2.1:+68391644 | MS.gene002676:CDS |
| AAAGTCCAAGAATTCTCAAG+AGG | 0.638231 | 2.1:-68388338 | None:intergenic |
| AAGTCCAAGAATTCTCAAGA+GGG | 0.640086 | 2.1:-68388337 | None:intergenic |
| AGGGTGAGATTGGTGACCGG+CGG | 0.679762 | 2.1:-68388318 | None:intergenic |
| AAAGCCAAAAGTCAAGAGTG+GGG | 0.695736 | 2.1:+68388383 | MS.gene002676:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATTTTATTAATAA+AGG | - | chr2.1:68390838-68390857 | None:intergenic | 0.0% |
| !!! | AAAATTATTTTATTAATAAA+GGG | - | chr2.1:68390837-68390856 | None:intergenic | 0.0% |
| !! | TTGTTTAAGTATATTATTTA+AGG | + | chr2.1:68390667-68390686 | MS.gene002676:intron | 10.0% |
| !!! | GATTCATTTTTATTTTAATT+GGG | + | chr2.1:68388623-68388642 | MS.gene002676:intron | 10.0% |
| !!! | TGATTCATTTTTATTTTAAT+TGG | + | chr2.1:68388622-68388641 | MS.gene002676:intron | 10.0% |
| !! | AATAAAATAAAGAATTGATG+AGG | - | chr2.1:68390419-68390438 | None:intergenic | 15.0% |
| !! | ATAAAATAAAGAATTGATGA+GGG | - | chr2.1:68390418-68390437 | None:intergenic | 15.0% |
| !!! | AATGTTGAAGAATTTTTTTA+AGG | + | chr2.1:68389046-68389065 | MS.gene002676:intron | 15.0% |
| !!! | AGTAATAATACATGTTTTAA+AGG | + | chr2.1:68390554-68390573 | MS.gene002676:intron | 15.0% |
| !!! | AGTATATTGGTTTTAAATTA+TGG | + | chr2.1:68390599-68390618 | MS.gene002676:intron | 15.0% |
| !!! | TATGATTCACTATTATTTTT+TGG | + | chr2.1:68391413-68391432 | MS.gene002676:intron | 15.0% |
| !!! | TGATTCATTTTTAGTTAATT+GGG | + | chr2.1:68389007-68389026 | MS.gene002676:intron | 15.0% |
| !! | AATTGTAAACAATAAGGTAT+TGG | - | chr2.1:68389997-68390016 | None:intergenic | 20.0% |
| !! | AGTTTGAATTGTAAACAATA+AGG | - | chr2.1:68390003-68390022 | None:intergenic | 20.0% |
| !! | ATTTCTATAAGCTATATTTG+AGG | + | chr2.1:68388860-68388879 | MS.gene002676:intron | 20.0% |
| !! | GAACACATAATTTACTATTA+TGG | + | chr2.1:68391497-68391516 | MS.gene002676:intron | 20.0% |
| !! | GAATTAGATGGTTATTATAA+TGG | + | chr2.1:68389885-68389904 | MS.gene002676:intron | 20.0% |
| !! | GATTGAGAATTTATATTTCA+GGG | + | chr2.1:68391318-68391337 | MS.gene002676:intron | 20.0% |
| !! | GCAAAATAACAAATAATAGT+AGG | - | chr2.1:68390387-68390406 | None:intergenic | 20.0% |
| !! | TAATACATAGTGTAGTATAT+TGG | + | chr2.1:68390586-68390605 | MS.gene002676:intron | 20.0% |
| !! | TGATTGAGAATTTATATTTC+AGG | + | chr2.1:68391317-68391336 | MS.gene002676:intron | 20.0% |
| !!! | AAGATTCAGTTTTTATGAAT+TGG | + | chr2.1:68388962-68388981 | MS.gene002676:intron | 20.0% |
| !!! | AATTCAATCTTTTCAACTTT+AGG | + | chr2.1:68389250-68389269 | MS.gene002676:intron | 20.0% |
| !!! | ACAATGTTGAAGAATTTTTT+AGG | + | chr2.1:68388660-68388679 | MS.gene002676:intron | 20.0% |
| !!! | ACTGATTATACTTTTGATAA+TGG | + | chr2.1:68391583-68391602 | MS.gene002676:intron | 20.0% |
| !!! | AGATTCAGTTTTTATGAATT+GGG | + | chr2.1:68388963-68388982 | MS.gene002676:intron | 20.0% |
| !!! | ATTGGGTATTTTTTTACATT+AGG | + | chr2.1:68388594-68388613 | MS.gene002676:intron | 20.0% |
| !!! | ATTGTAAACAATAAGGTATT+GGG | - | chr2.1:68389996-68390015 | None:intergenic | 20.0% |
| !!! | ATTGTTCATTTATTGATTCT+TGG | + | chr2.1:68389293-68389312 | MS.gene002676:intron | 20.0% |
| !!! | CTATTGAATTTGTTTTATGA+GGG | + | chr2.1:68389540-68389559 | MS.gene002676:intron | 20.0% |
| !!! | CTGATTATACTTTTGATAAT+GGG | + | chr2.1:68391584-68391603 | MS.gene002676:intron | 20.0% |
| !!! | GTGATTCATTTTTAGTTAAT+TGG | + | chr2.1:68389006-68389025 | MS.gene002676:intron | 20.0% |
| !!! | TGATGAATTAAAGTACTAAT+TGG | + | chr2.1:68389584-68389603 | MS.gene002676:intron | 20.0% |
| !!! | TGATTATACTTTTGATAATG+GGG | + | chr2.1:68391585-68391604 | MS.gene002676:intron | 20.0% |
| !!! | TTGGGTATTTTTTTACATTA+GGG | + | chr2.1:68388595-68388614 | MS.gene002676:intron | 20.0% |
| ! | AACCATCTAATTCTTTCTTT+GGG | - | chr2.1:68389878-68389897 | None:intergenic | 25.0% |
| ! | AATAAAGGGCTACTAAAATA+TGG | - | chr2.1:68390823-68390842 | None:intergenic | 25.0% |
| ! | ACAATTCAAAACAGAAGTTA+GGG | - | chr2.1:68391777-68391796 | None:intergenic | 25.0% |
| ! | ACTAAATTGATAGACCAAAA+AGG | - | chr2.1:68391280-68391299 | None:intergenic | 25.0% |
| ! | ATTCACAAAAACTGAATCTT+TGG | - | chr2.1:68388576-68388595 | None:intergenic | 25.0% |
| ! | CAGTTCATGAACAATTTAAA+TGG | + | chr2.1:68389922-68389941 | MS.gene002676:intron | 25.0% |
| ! | TAACCATCTAATTCTTTCTT+TGG | - | chr2.1:68389879-68389898 | None:intergenic | 25.0% |
| ! | TACATGAAATATAAAGCCAA+TGG | - | chr2.1:68391690-68391709 | None:intergenic | 25.0% |
| ! | TATGCAATCTTATACAAAAG+CGG | - | chr2.1:68388782-68388801 | None:intergenic | 25.0% |
| ! | TGACAAATATAAAAACACAC+CGG | - | chr2.1:68391739-68391758 | None:intergenic | 25.0% |
| ! | TTGATTCAATAGAAACTAGA+TGG | + | chr2.1:68389786-68389805 | MS.gene002676:intron | 25.0% |
| ! | TTTATAGACTTTGGTCAATT+TGG | + | chr2.1:68391193-68391212 | MS.gene002676:intron | 25.0% |
| !! | AAAATGTTGCAGAAATTTTG+AGG | + | chr2.1:68389223-68389242 | MS.gene002676:intron | 25.0% |
| !! | AAGATTCAGTTTTTGTGAAT+TGG | + | chr2.1:68388576-68388595 | MS.gene002676:intron | 25.0% |
| !! | AATTCTATCCTTTTCACTTT+TGG | + | chr2.1:68388462-68388481 | MS.gene002676:intron | 25.0% |
| !! | AATTGGGTATTTTTCACATT+AGG | + | chr2.1:68388979-68388998 | MS.gene002676:intron | 25.0% |
| !! | AGATTCAGTTTTTGTGAATT+GGG | + | chr2.1:68388577-68388596 | MS.gene002676:intron | 25.0% |
| !! | ATCGTTCATTTATTGTTTCT+TGG | + | chr2.1:68389168-68389187 | MS.gene002676:intron | 25.0% |
| !! | ATTGGGTATTTTTCACATTA+GGG | + | chr2.1:68388980-68388999 | MS.gene002676:intron | 25.0% |
| !! | GTTTTTCATCAATACCTTAT+TGG | + | chr2.1:68391139-68391158 | MS.gene002676:intron | 25.0% |
| !! | TTTTCAACTTTAGGTCTTTT+GGG | + | chr2.1:68389259-68389278 | MS.gene002676:intron | 25.0% |
| !!! | ATTGTTCATTTGTTGTTTCT+TGG | + | chr2.1:68388504-68388523 | MS.gene002676:intron | 25.0% |
| !!! | CTTGGTTATTTTTGTATCTT+GGG | + | chr2.1:68389186-68389205 | MS.gene002676:intron | 25.0% |
| !!! | GCTATTGAATTTGTTTTATG+AGG | + | chr2.1:68389539-68389558 | MS.gene002676:intron | 25.0% |
| !!! | TCTTGCGTGTTTTTAATTTT+GGG | + | chr2.1:68388549-68388568 | MS.gene002676:intron | 25.0% |
| !!! | TCTTGGTTATTTTTGTATCT+TGG | + | chr2.1:68389185-68389204 | MS.gene002676:intron | 25.0% |
| !!! | TTCTTGCGTGTTTTTAATTT+TGG | + | chr2.1:68388548-68388567 | MS.gene002676:intron | 25.0% |
| AACTTCAGAGACTATATTAG+TGG | - | chr2.1:68391175-68391194 | None:intergenic | 30.0% | |
| AAGGGGTTTCTTGATTATAA+TGG | + | chr2.1:68391662-68391681 | MS.gene002676:CDS | 30.0% | |
| AATAAGCTCTTTATCCAAAC+AGG | - | chr2.1:68388714-68388733 | None:intergenic | 30.0% | |
| ACCATCTAATTCTTTCTTTG+GGG | - | chr2.1:68389877-68389896 | None:intergenic | 30.0% | |
| AGCATAAGATTGAACCAAAA+TGG | + | chr2.1:68389431-68389450 | MS.gene002676:CDS | 30.0% | |
| CAAATAATAGTAGGTTGTAG+TGG | - | chr2.1:68390378-68390397 | None:intergenic | 30.0% | |
| CAAGCATAAACAGATACATA+TGG | - | chr2.1:68391542-68391561 | None:intergenic | 30.0% | |
| CAATCTTATGCTTGAAACAA+TGG | - | chr2.1:68389423-68389442 | None:intergenic | 30.0% | |
| CACAATTCAAAACAGAAGTT+AGG | - | chr2.1:68391778-68391797 | None:intergenic | 30.0% | |
| CAGATACATATGGTAATTTC+TGG | - | chr2.1:68391532-68391551 | None:intergenic | 30.0% | |
| CAGTTCATCAGCTATTTAAA+TGG | + | chr2.1:68391074-68391093 | MS.gene002676:intron | 30.0% | |
| CATTATCATAGTTGTCAAAG+CGG | - | chr2.1:68390953-68390972 | None:intergenic | 30.0% | |
| GAGGACTTATGAAAATAAGT+TGG | + | chr2.1:68388879-68388898 | MS.gene002676:intron | 30.0% | |
| GCATAAGATTGAACCAAAAT+GGG | + | chr2.1:68389432-68389451 | MS.gene002676:CDS | 30.0% | |
| GTTATATTTCAGATGAGCAT+CGG | + | chr2.1:68391629-68391648 | MS.gene002676:intron | 30.0% | |
| TGATGAAAAACAAGAAACAC+AGG | - | chr2.1:68391130-68391149 | None:intergenic | 30.0% | |
| ! | AACAGTAGAAAAAGTGTAGA+CGG | - | chr2.1:68388423-68388442 | None:intergenic | 30.0% |
| ! | AACTCTTGTAATTTGTCAGA+TGG | + | chr2.1:68391450-68391469 | MS.gene002676:intron | 30.0% |
| ! | CTTGATTATAATGGAACCAT+TGG | + | chr2.1:68391671-68391690 | MS.gene002676:CDS | 30.0% |
| ! | CTTTTCAACTTTAGGTCTTT+TGG | + | chr2.1:68389258-68389277 | MS.gene002676:intron | 30.0% |
| ! | GGCTTTATATTTCATGTAAG+TGG | + | chr2.1:68391692-68391711 | MS.gene002676:intron | 30.0% |
| ! | TGGAAAGTTTTCACGTTTTT+TGG | + | chr2.1:68391094-68391113 | MS.gene002676:intron | 30.0% |
| ! | TGTTGATGTCTTCGATTTTA+GGG | - | chr2.1:68388238-68388257 | None:intergenic | 30.0% |
| ! | TTCTTGGTAACTTTAGTTGT+TGG | + | chr2.1:68389624-68389643 | MS.gene002676:intron | 30.0% |
| ! | TTGAGGATTTTCAATATCAG+AGG | - | chr2.1:68391248-68391267 | None:intergenic | 30.0% |
| ! | TTGTTGATGTCTTCGATTTT+AGG | - | chr2.1:68388239-68388258 | None:intergenic | 30.0% |
| !! | AATCTTTTGAGAGACTGTTT+AGG | - | chr2.1:68388948-68388967 | None:intergenic | 30.0% |
| !! | TCGTGTTACTGAAATTTTCA+TGG | + | chr2.1:68389337-68389356 | MS.gene002676:intron | 30.0% |
| !! | TCTCTGAAGTTTATAGACTT+TGG | + | chr2.1:68391184-68391203 | MS.gene002676:intron | 30.0% |
| !! | TTGAATTGTGCTATTTCTGT+AGG | + | chr2.1:68391788-68391807 | MS.gene002676:intron | 30.0% |
| !!! | TTTTAGAATTGCTGAGAGTT+AGG | - | chr2.1:68391386-68391405 | None:intergenic | 30.0% |
| AAAGTCCAAGAATTCTCAAG+AGG | - | chr2.1:68388341-68388360 | None:intergenic | 35.0% | |
| AAGTCCAAGAATTCTCAAGA+GGG | - | chr2.1:68388340-68388359 | None:intergenic | 35.0% | |
| ACCCCAAAGAAAGAATTAGA+TGG | + | chr2.1:68389873-68389892 | MS.gene002676:intron | 35.0% | |
| ATCAACAACGATCTTGAAGA+AGG | + | chr2.1:68388251-68388270 | MS.gene002676:CDS | 35.0% | |
| ATGAAAGTAATAGTCACGTG+AGG | + | chr2.1:68390327-68390346 | MS.gene002676:intron | 35.0% | |
| ATGAGCAGTTGTTATGTGAA+TGG | + | chr2.1:68391002-68391021 | MS.gene002676:intron | 35.0% | |
| ATTGGAGAGCAATTTGATCA+TGG | + | chr2.1:68389652-68389671 | MS.gene002676:CDS | 35.0% | |
| CAAAAAGGTCTAACTGATTG+AGG | - | chr2.1:68391265-68391284 | None:intergenic | 35.0% | |
| CGCTTTGACAACTATGATAA+TGG | + | chr2.1:68390951-68390970 | MS.gene002676:intron | 35.0% | |
| CTTTAGTTGTTGGCAATGAT+TGG | + | chr2.1:68389634-68389653 | MS.gene002676:intron | 35.0% | |
| GATCATGGAGATGAAATTTG+TGG | + | chr2.1:68389667-68389686 | MS.gene002676:CDS | 35.0% | |
| GGGGTGAAAGAATTTCTATT+TGG | + | chr2.1:68389713-68389732 | MS.gene002676:CDS | 35.0% | |
| TAAAGCCAAAAGTCAAGAGT+GGG | + | chr2.1:68388382-68388401 | MS.gene002676:CDS | 35.0% | |
| TGATACTAGCTGGTTGTATA+CGG | + | chr2.1:68389513-68389532 | MS.gene002676:CDS | 35.0% | |
| TTCCACCATTAGCACAAATA+GGG | - | chr2.1:68389462-68389481 | None:intergenic | 35.0% | |
| TTGAGAATTCTTGGACTTTC+TGG | + | chr2.1:68388342-68388361 | MS.gene002676:CDS | 35.0% | |
| TTTCCACCATTAGCACAAAT+AGG | - | chr2.1:68389463-68389482 | None:intergenic | 35.0% | |
| TTTCTACTGTTGAAGAGTTC+TGG | + | chr2.1:68388432-68388451 | MS.gene002676:CDS | 35.0% | |
| ! | ACAGTAGAAAAAGTGTAGAC+GGG | - | chr2.1:68388422-68388441 | None:intergenic | 35.0% |
| ! | AGCTTCGATCTTTTCACTTT+AGG | + | chr2.1:68388686-68388705 | MS.gene002676:intron | 35.0% |
| ! | CTCAATCAGTTAGACCTTTT+TGG | + | chr2.1:68391263-68391282 | MS.gene002676:intron | 35.0% |
| ! | GCTTCGATCTTTTCACTTTA+GGG | + | chr2.1:68388687-68388706 | MS.gene002676:intron | 35.0% |
| ! | TTTCACTTTAGGGACTTGTT+TGG | + | chr2.1:68388697-68388716 | MS.gene002676:intron | 35.0% |
| !! | CATGTGTGTGTTTTTGTTCT+TGG | + | chr2.1:68389608-68389627 | MS.gene002676:intron | 35.0% |
| !! | CTTTTCACTTTTGGTCTTCT+GGG | + | chr2.1:68388471-68388490 | MS.gene002676:intron | 35.0% |
| !!! | ACTGGACTGTGAATTTTTTG+AGG | + | chr2.1:68389482-68389501 | MS.gene002676:CDS | 35.0% |
| !!! | CTGGACTGTGAATTTTTTGA+GGG | + | chr2.1:68389483-68389502 | MS.gene002676:CDS | 35.0% |
| !!! | TGGACTGTGAATTTTTTGAG+GGG | + | chr2.1:68389484-68389503 | MS.gene002676:CDS | 35.0% |
| AAAGCCAAAAGTCAAGAGTG+GGG | + | chr2.1:68388383-68388402 | MS.gene002676:CDS | 40.0% | |
| AATTCTCAAGAGGGTGAGAT+TGG | - | chr2.1:68388331-68388350 | None:intergenic | 40.0% | |
| ACATAACAACTGCTCATCGT+TGG | - | chr2.1:68390999-68391018 | None:intergenic | 40.0% | |
| AGTTGTGAATGTCAGGAGTA+GGG | + | chr2.1:68389693-68389712 | MS.gene002676:CDS | 40.0% | |
| ATGTTCTCTGTTGTCAATCG+CGG | + | chr2.1:68390037-68390056 | MS.gene002676:intron | 40.0% | |
| CCAGAAGACCAAAAGTGAAA+AGG | - | chr2.1:68388473-68388492 | None:intergenic | 40.0% | |
| CTAAAGCCAAAAGTCAAGAG+TGG | + | chr2.1:68388381-68388400 | MS.gene002676:CDS | 40.0% | |
| GAAGACCCTATTTGTGCTAA+TGG | + | chr2.1:68389454-68389473 | MS.gene002676:CDS | 40.0% | |
| GTATCTGTTTATGCTTGTGC+TGG | + | chr2.1:68391545-68391564 | MS.gene002676:intron | 40.0% | |
| GTGGTTCACTCTAACCAATA+AGG | - | chr2.1:68391156-68391175 | None:intergenic | 40.0% | |
| TGGGAGAAAACAAGAAACAC+AGG | - | chr2.1:68389977-68389996 | None:intergenic | 40.0% | |
| TGTGATTTGATCGTCGTTGA+TGG | - | chr2.1:68388213-68388232 | None:intergenic | 40.0% | |
| ! | AATAGTAGGTTGTAGTGGAG+TGG | - | chr2.1:68390373-68390392 | None:intergenic | 40.0% |
| ! | AGCATCGGAAAACAATGGAA+GGG | + | chr2.1:68391644-68391663 | MS.gene002676:CDS | 40.0% |
| ! | ATAGTAGGTTGTAGTGGAGT+GGG | - | chr2.1:68390372-68390391 | None:intergenic | 40.0% |
| ! | CAAATAGGGTCTTCCCATTT+TGG | - | chr2.1:68389448-68389467 | None:intergenic | 40.0% |
| ! | GAACCAAAACACAGTCGTTT+TGG | - | chr2.1:68390233-68390252 | None:intergenic | 40.0% |
| ! | TTTCACTTTAGGGACCTGTT+TGG | + | chr2.1:68389083-68389102 | MS.gene002676:intron | 40.0% |
| ! | TTTGTGCTAATGGTGGAAAC+TGG | + | chr2.1:68389464-68389483 | MS.gene002676:CDS | 40.0% |
| !! | AGATGAGCATCGGAAAACAA+TGG | + | chr2.1:68391639-68391658 | MS.gene002676:intron | 40.0% |
| !! | CCTTTTCACTTTTGGTCTTC+TGG | + | chr2.1:68388470-68388489 | MS.gene002676:intron | 40.0% |
| !! | CTTGCTGTGTGTTTTTATGC+CGG | + | chr2.1:68391717-68391736 | MS.gene002676:intron | 40.0% |
| !! | TGGTTCTTGGATGTTGTTTC+CGG | + | chr2.1:68390247-68390266 | MS.gene002676:intron | 40.0% |
| !!! | AACGACTGTGTTTTGGTTCT+TGG | + | chr2.1:68390234-68390253 | MS.gene002676:intron | 40.0% |
| !!! | ACTTTTGGCTTTAGCTTGAG+GGG | - | chr2.1:68388375-68388394 | None:intergenic | 40.0% |
| !!! | ATCGTCGTTGATGGATTTTG+GGG | - | chr2.1:68388204-68388223 | None:intergenic | 40.0% |
| !!! | GACTTTTGGCTTTAGCTTGA+GGG | - | chr2.1:68388376-68388395 | None:intergenic | 40.0% |
| !!! | GATCGTCGTTGATGGATTTT+GGG | - | chr2.1:68388205-68388224 | None:intergenic | 40.0% |
| !!! | TGACTTTTGGCTTTAGCTTG+AGG | - | chr2.1:68388377-68388396 | None:intergenic | 40.0% |
| !!! | TGATCGTCGTTGATGGATTT+TGG | - | chr2.1:68388206-68388225 | None:intergenic | 40.0% |
| ACTAGCTGGTTGTATACGGT+AGG | + | chr2.1:68389517-68389536 | MS.gene002676:intron | 45.0% | |
| CAGTTGTGAATGTCAGGAGT+AGG | + | chr2.1:68389692-68389711 | MS.gene002676:CDS | 45.0% | |
| CATTCACCATCCTAGCAAGT+TGG | + | chr2.1:68389381-68389400 | MS.gene002676:CDS | 45.0% | |
| CTCACCCTCTTGAGAATTCT+TGG | + | chr2.1:68388333-68388352 | MS.gene002676:CDS | 45.0% | |
| CTTCTCTCCTTCAGATCTAC+CGG | - | chr2.1:68390269-68390288 | None:intergenic | 45.0% | |
| GACCCTATTTGTGCTAATGG+TGG | + | chr2.1:68389457-68389476 | MS.gene002676:CDS | 45.0% | |
| GCATCGGAAAACAATGGAAG+GGG | + | chr2.1:68391645-68391664 | MS.gene002676:CDS | 45.0% | |
| GGCCACCCTAAAAATTGACA+CGG | - | chr2.1:68390914-68390933 | None:intergenic | 45.0% | |
| GGGGAAAATCTGATACTAGC+TGG | + | chr2.1:68389503-68389522 | MS.gene002676:CDS | 45.0% | |
| GTTGTGAATGTCAGGAGTAG+GGG | + | chr2.1:68389694-68389713 | MS.gene002676:CDS | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | - | chr2.1:68390945-68390964 | None:intergenic | 45.0% | |
| TATGCTCCGATCCGAAATAG+CGG | - | chr2.1:68390193-68390212 | None:intergenic | 45.0% | |
| ! | ACTACCCCACTCTTGACTTT+TGG | - | chr2.1:68388390-68388409 | None:intergenic | 45.0% |
| ! | CTACTGTTGAAGAGTTCTGG+AGG | + | chr2.1:68388435-68388454 | MS.gene002676:CDS | 45.0% |
| ! | CTGATGCGGCTGTTCATTTT+TGG | - | chr2.1:68390083-68390102 | None:intergenic | 45.0% |
| ! | GTTGTTTCCGGTAGATCTGA+AGG | + | chr2.1:68390259-68390278 | MS.gene002676:intron | 45.0% |
| !! | GAGCATCGGAAAACAATGGA+AGG | + | chr2.1:68391643-68391662 | MS.gene002676:CDS | 45.0% |
| !!! | ATAAAATAATTTTTAGTTTT+AGG | + | chr2.1:68390844-68390863 | MS.gene002676:intron | 5.0% |
| CCCTAAAAATTGACACGGCG+CGG | - | chr2.1:68390909-68390928 | None:intergenic | 50.0% | |
| GTGGAGCAGTTGTGAATGTC+AGG | + | chr2.1:68389686-68389705 | MS.gene002676:CDS | 50.0% | |
| TGCTGCTAATGAAGCTGCTC+AGG | + | chr2.1:68389744-68389763 | MS.gene002676:CDS | 50.0% | |
| ! | AAGAGGGTGAGATTGGTGAC+CGG | - | chr2.1:68388324-68388343 | None:intergenic | 50.0% |
| ! | ACCGCGCCGTGTCAATTTTT+AGG | + | chr2.1:68390905-68390924 | MS.gene002676:intron | 50.0% |
| ! | ACTCCAAGAGCCAACTTGCT+AGG | - | chr2.1:68389394-68389413 | None:intergenic | 50.0% |
| ! | CATCCTAGCAAGTTGGCTCT+TGG | + | chr2.1:68389388-68389407 | MS.gene002676:CDS | 50.0% |
| ! | CCGCGCCGTGTCAATTTTTA+GGG | + | chr2.1:68390906-68390925 | MS.gene002676:intron | 50.0% |
| ! | GCGCCAAAACGACTGTGTTT+TGG | + | chr2.1:68390227-68390246 | MS.gene002676:intron | 50.0% |
| ! | TAGGTTGTAGTGGAGTGGGT+GGG | - | chr2.1:68390368-68390387 | None:intergenic | 50.0% |
| ! | TCACGTGAGGCACTTTATGC+TGG | + | chr2.1:68390340-68390359 | MS.gene002676:intron | 50.0% |
| !! | CAAGAGCCAACTTGCTAGGA+TGG | - | chr2.1:68389390-68389409 | None:intergenic | 50.0% |
| !! | CGCCGTGTCAATTTTTAGGG+TGG | + | chr2.1:68390909-68390928 | MS.gene002676:intron | 50.0% |
| AATTGACACGGCGCGGTATG+CGG | - | chr2.1:68390902-68390921 | None:intergenic | 55.0% | |
| ATCGGAGAACTCGGGTTTCG+CGG | + | chr2.1:68390122-68390141 | MS.gene002676:intron | 55.0% | |
| ATTTCCAAACCCCTCACCGC+CGG | + | chr2.1:68388302-68388321 | MS.gene002676:CDS | 55.0% | |
| GGTCAAAGCGGCCGCTATTT+CGG | + | chr2.1:68390179-68390198 | MS.gene002676:intron | 55.0% | |
| GGTGAGGGGTTTGGAAATGG+CGG | - | chr2.1:68388300-68388319 | None:intergenic | 55.0% | |
| ! | AAGCGGCCGCTATTTCGGAT+CGG | + | chr2.1:68390184-68390203 | MS.gene002676:intron | 55.0% |
| ! | GTAGGTTGTAGTGGAGTGGG+TGG | - | chr2.1:68390369-68390388 | None:intergenic | 55.0% |
| AGTTCTCCGATAGCGCTGCG+CGG | - | chr2.1:68390113-68390132 | None:intergenic | 60.0% | |
| ATTGACACGGCGCGGTATGC+GGG | - | chr2.1:68390901-68390920 | None:intergenic | 60.0% | |
| CGCAGCGCTATCGGAGAACT+CGG | + | chr2.1:68390113-68390132 | MS.gene002676:intron | 60.0% | |
| CGCGAAACCGTGTAGCGTAG+CGG | + | chr2.1:68390146-68390165 | MS.gene002676:intron | 60.0% | |
| CGCTACGCTACACGGTTTCG+CGG | - | chr2.1:68390148-68390167 | None:intergenic | 60.0% | |
| GAGGGGTTTGGAAATGGCGG+AGG | - | chr2.1:68388297-68388316 | None:intergenic | 60.0% | |
| GCAGCGCTATCGGAGAACTC+GGG | + | chr2.1:68390114-68390133 | MS.gene002676:intron | 60.0% | |
| GCGAAACCGTGTAGCGTAGC+GGG | + | chr2.1:68390147-68390166 | MS.gene002676:intron | 60.0% | |
| GCGGGGGCTATTACATGACG+CGG | - | chr2.1:68390872-68390891 | None:intergenic | 60.0% | |
| GGCGGTGAGGGGTTTGGAAA+TGG | - | chr2.1:68388303-68388322 | None:intergenic | 60.0% | |
| TATCGGCCCGCTACGCTACA+CGG | - | chr2.1:68390156-68390175 | None:intergenic | 60.0% | |
| ! | AGATTGGTGACCGGCGGTGA+GGG | - | chr2.1:68388315-68388334 | None:intergenic | 60.0% |
| ! | AGGGTGAGATTGGTGACCGG+CGG | - | chr2.1:68388321-68388340 | None:intergenic | 60.0% |
| TGCGCGGTGGCGTTCTGATG+CGG | - | chr2.1:68390097-68390116 | None:intergenic | 65.0% | |
| TTGTCAATCGCGGCCGCTCC+CGG | + | chr2.1:68390047-68390066 | MS.gene002676:intron | 65.0% | |
| ! | CGGCCGCTTTGACCCGCTAT+CGG | - | chr2.1:68390173-68390192 | None:intergenic | 65.0% |
| ! | GAGATTGGTGACCGGCGGTG+AGG | - | chr2.1:68388316-68388335 | None:intergenic | 65.0% |
| ! | GATTGGTGACCGGCGGTGAG+GGG | - | chr2.1:68388314-68388333 | None:intergenic | 65.0% |
| !! | GGGCCGATAGCGGGTCAAAG+CGG | + | chr2.1:68390167-68390186 | MS.gene002676:intron | 65.0% |
| !! | GTAGCGTAGCGGGCCGATAG+CGG | + | chr2.1:68390157-68390176 | MS.gene002676:intron | 65.0% |
| !! | TAGCGTAGCGGGCCGATAGC+GGG | + | chr2.1:68390158-68390177 | MS.gene002676:intron | 65.0% |
| !!! | ATTTTTGGCCGCTCCGCGCC+GGG | - | chr2.1:68390068-68390087 | None:intergenic | 65.0% |
| !!! | CATTTTTGGCCGCTCCGCGC+CGG | - | chr2.1:68390069-68390088 | None:intergenic | 65.0% |
| ACGCCACCGCGCAGCGCTAT+CGG | + | chr2.1:68390104-68390123 | MS.gene002676:intron | 70.0% | |
| GTGACCGGCGGTGAGGGGTT+TGG | - | chr2.1:68388309-68388328 | None:intergenic | 70.0% | |
| TCTCCGATAGCGCTGCGCGG+TGG | - | chr2.1:68390110-68390129 | None:intergenic | 70.0% | |
| AGCGGAAACGCGGCGCGACG+CGG | - | chr2.1:68390935-68390954 | None:intergenic | 75.0% | |
| ! | AATCGCGGCCGCTCCCGGCG+CGG | + | chr2.1:68390052-68390071 | MS.gene002676:intron | 80.0% |
| ! | CGCGGTATGCGGGCGCGACG+CGG | - | chr2.1:68390891-68390910 | None:intergenic | 80.0% |
| ! | CGGTATGCGGGCGCGACGCG+GGG | - | chr2.1:68390889-68390908 | None:intergenic | 80.0% |
| ! | GCGGTATGCGGGCGCGACGC+GGG | - | chr2.1:68390890-68390909 | None:intergenic | 80.0% |
| ! | GGTATGCGGGCGCGACGCGG+GGG | - | chr2.1:68390888-68390907 | None:intergenic | 80.0% |
| ! | TGGCCGCTCCGCGCCGGGAG+CGG | - | chr2.1:68390063-68390082 | None:intergenic | 85.0% |
| ! | CGGCCGCTCCCGGCGCGGAG+CGG | + | chr2.1:68390057-68390076 | MS.gene002676:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 68388185 | 68391860 | 68388185 | ID=MS.gene002676 |
| chr2.1 | mRNA | 68388185 | 68391860 | 68388185 | ID=MS.gene002676.t1;Parent=MS.gene002676 |
| chr2.1 | exon | 68388185 | 68388456 | 68388185 | ID=MS.gene002676.t1.exon1;Parent=MS.gene002676.t1 |
| chr2.1 | CDS | 68388185 | 68388456 | 68388185 | ID=cds.MS.gene002676.t1;Parent=MS.gene002676.t1 |
| chr2.1 | exon | 68389369 | 68389534 | 68389369 | ID=MS.gene002676.t1.exon2;Parent=MS.gene002676.t1 |
| chr2.1 | CDS | 68389369 | 68389534 | 68389369 | ID=cds.MS.gene002676.t1;Parent=MS.gene002676.t1 |
| chr2.1 | exon | 68389640 | 68389765 | 68389640 | ID=MS.gene002676.t1.exon3;Parent=MS.gene002676.t1 |
| chr2.1 | CDS | 68389640 | 68389765 | 68389640 | ID=cds.MS.gene002676.t1;Parent=MS.gene002676.t1 |
| chr2.1 | exon | 68391641 | 68391706 | 68391641 | ID=MS.gene002676.t1.exon4;Parent=MS.gene002676.t1 |
| chr2.1 | CDS | 68391641 | 68391706 | 68391641 | ID=cds.MS.gene002676.t1;Parent=MS.gene002676.t1 |
| chr2.1 | exon | 68391810 | 68391860 | 68391810 | ID=MS.gene002676.t1.exon5;Parent=MS.gene002676.t1 |
| chr2.1 | CDS | 68391810 | 68391860 | 68391810 | ID=cds.MS.gene002676.t1;Parent=MS.gene002676.t1 |
| Gene Sequence |
| Protein sequence |
