Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071405.t1 | XP_003593727.1 | 96.7 | 243 | 8 | 0 | 1 | 243 | 1 | 243 | 3.70E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071405.t1 | Q6NMR9 | 68.9 | 241 | 68 | 2 | 4 | 242 | 3 | 238 | 2.5e-95 | 349.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071405.t1 | G7IK96 | 96.7 | 243 | 8 | 0 | 1 | 243 | 1 | 243 | 2.7e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene071405 | 0.830363 | 3.06E-55 | -1.69E-46 |
| MS.gene04932 | MS.gene071405 | 0.815632 | 8.37E-52 | -1.69E-46 |
| MS.gene050338 | MS.gene071405 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene071405 | -0.802334 | 5.89E-49 | -1.69E-46 |
| MS.gene050710 | MS.gene071405 | 0.807478 | 4.96E-50 | -1.69E-46 |
| MS.gene051552 | MS.gene071405 | 0.808784 | 2.61E-50 | -1.69E-46 |
| MS.gene052223 | MS.gene071405 | 0.81577 | 7.80E-52 | -1.69E-46 |
| MS.gene052308 | MS.gene071405 | 0.801012 | 1.10E-48 | -1.69E-46 |
| MS.gene05240 | MS.gene071405 | 0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene052705 | MS.gene071405 | 0.809832 | 1.56E-50 | -1.69E-46 |
| MS.gene053920 | MS.gene071405 | 0.80307 | 4.15E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene071405 | 0.806243 | 9.04E-50 | -1.69E-46 |
| MS.gene054850 | MS.gene071405 | 0.813105 | 3.03E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene071405 | 0.814778 | 1.30E-51 | -1.69E-46 |
| MS.gene054941 | MS.gene071405 | 0.829363 | 5.37E-55 | -1.69E-46 |
| MS.gene055159 | MS.gene071405 | 0.802392 | 5.73E-49 | -1.69E-46 |
| MS.gene056198 | MS.gene071405 | 0.804321 | 2.28E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene071405 | -0.834441 | 2.99E-56 | -1.69E-46 |
| MS.gene05652 | MS.gene071405 | 0.842081 | 3.21E-58 | -1.69E-46 |
| MS.gene056688 | MS.gene071405 | 0.848102 | 7.59E-60 | -1.69E-46 |
| MS.gene056694 | MS.gene071405 | 0.807296 | 5.42E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene071405 | 0.820964 | 5.19E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene071405 | 0.819164 | 1.34E-52 | -1.69E-46 |
| MS.gene057717 | MS.gene071405 | 0.85389 | 1.77E-61 | -1.69E-46 |
| MS.gene058158 | MS.gene071405 | 0.804936 | 1.70E-49 | -1.69E-46 |
| MS.gene058416 | MS.gene071405 | 0.809211 | 2.12E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene071405 | 0.823919 | 1.07E-53 | -1.69E-46 |
| MS.gene05926 | MS.gene071405 | 0.87107 | 9.04E-67 | -1.69E-46 |
| MS.gene05960 | MS.gene071405 | 0.811715 | 6.10E-51 | -1.69E-46 |
| MS.gene059699 | MS.gene071405 | 0.802275 | 6.06E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene071405 | 0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene071405 | 0.819952 | 8.86E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071405 | MS.gene56873 | PPI |
| MS.gene071405 | MS.gene48374 | PPI |
| MS.gene071405 | MS.gene057336 | PPI |
| MS.gene071405 | MS.gene69231 | PPI |
| MS.gene031984 | MS.gene071405 | PPI |
| MS.gene008064 | MS.gene071405 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071405.t1 | MTR_2g015500 | 96.708 | 243 | 8 | 0 | 1 | 243 | 1 | 243 | 3.08e-180 | 494 |
| MS.gene071405.t1 | MTR_2g015510 | 84.298 | 242 | 36 | 1 | 2 | 243 | 3 | 242 | 3.81e-156 | 433 |
| MS.gene071405.t1 | MTR_2g015480 | 67.249 | 229 | 58 | 4 | 12 | 239 | 65 | 277 | 2.09e-98 | 290 |
| MS.gene071405.t1 | MTR_4g105680 | 45.249 | 221 | 112 | 2 | 25 | 242 | 51 | 265 | 5.05e-58 | 185 |
| MS.gene071405.t1 | MTR_7g068550 | 41.981 | 212 | 113 | 3 | 4 | 215 | 6 | 207 | 4.49e-54 | 175 |
| MS.gene071405.t1 | MTR_4g016510 | 38.136 | 236 | 134 | 4 | 4 | 235 | 6 | 233 | 1.09e-51 | 169 |
| MS.gene071405.t1 | MTR_7g068530 | 38.075 | 239 | 134 | 4 | 4 | 238 | 6 | 234 | 1.80e-50 | 165 |
| MS.gene071405.t1 | MTR_7g068460 | 38.318 | 214 | 122 | 4 | 2 | 215 | 31 | 234 | 1.25e-47 | 159 |
| MS.gene071405.t1 | MTR_7g068500 | 37.850 | 214 | 123 | 4 | 2 | 215 | 30 | 233 | 6.79e-46 | 154 |
| MS.gene071405.t1 | MTR_7g068470 | 36.620 | 213 | 123 | 6 | 4 | 215 | 2 | 203 | 8.21e-44 | 148 |
| MS.gene071405.t1 | MTR_7g068450 | 34.694 | 245 | 140 | 5 | 4 | 239 | 2 | 235 | 1.45e-43 | 148 |
| MS.gene071405.t1 | MTR_7g068470 | 37.089 | 213 | 118 | 7 | 4 | 215 | 2 | 199 | 2.38e-43 | 147 |
| MS.gene071405.t1 | MTR_3g070460 | 36.449 | 214 | 124 | 5 | 4 | 215 | 6 | 209 | 1.60e-42 | 145 |
| MS.gene071405.t1 | MTR_4g016500 | 32.484 | 157 | 65 | 5 | 33 | 189 | 277 | 392 | 4.11e-18 | 83.2 |
| MS.gene071405.t1 | MTR_7g068520 | 50.847 | 59 | 28 | 1 | 4 | 62 | 3 | 60 | 2.28e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071405.t1 | AT5G45920 | 68.880 | 241 | 68 | 2 | 4 | 242 | 3 | 238 | 2.57e-122 | 348 |
| MS.gene071405.t1 | AT5G45920 | 68.880 | 241 | 68 | 2 | 4 | 242 | 3 | 238 | 2.57e-122 | 348 |
| MS.gene071405.t1 | AT5G45920 | 72.043 | 186 | 45 | 2 | 4 | 187 | 3 | 183 | 1.90e-96 | 280 |
| MS.gene071405.t1 | AT5G45920 | 72.043 | 186 | 45 | 2 | 4 | 187 | 3 | 183 | 1.90e-96 | 280 |
| MS.gene071405.t1 | AT5G62930 | 52.066 | 242 | 107 | 2 | 4 | 242 | 2 | 237 | 2.21e-83 | 249 |
| MS.gene071405.t1 | AT5G62930 | 52.066 | 242 | 107 | 2 | 4 | 242 | 28 | 263 | 7.88e-83 | 248 |
| MS.gene071405.t1 | AT5G62930 | 49.438 | 178 | 87 | 1 | 68 | 242 | 2 | 179 | 8.00e-54 | 172 |
| MS.gene071405.t1 | AT2G38180 | 38.627 | 233 | 129 | 4 | 4 | 232 | 6 | 228 | 9.91e-48 | 160 |
| MS.gene071405.t1 | AT3G11210 | 35.246 | 244 | 139 | 6 | 4 | 241 | 6 | 236 | 1.57e-45 | 153 |
Find 67 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTACAGAAATGCCTTTA+AGG | 0.118994 | 2.4:+69552859 | None:intergenic |
| GCAGCTTCATTAGTCCTTTC+AGG | 0.209931 | 2.4:+69553387 | None:intergenic |
| TGACCCTAATGACCCCTTAA+AGG | 0.261070 | 2.4:-69552873 | MS.gene071405:CDS |
| GTCAGGGAACTGTTGCATTT+TGG | 0.294369 | 2.4:+69553296 | None:intergenic |
| CTCCATTGTCTCCTTCTTCA+AGG | 0.304012 | 2.4:-69554687 | MS.gene071405:intron |
| AATGCCTTTAAGGGGTCATT+AGG | 0.307170 | 2.4:+69552869 | None:intergenic |
| TCCTTTGATGTTGGAGGATG+GGG | 0.334235 | 2.4:-69555452 | MS.gene071405:CDS |
| TACTACAGAAATGCCTTTAA+GGG | 0.399937 | 2.4:+69552860 | None:intergenic |
| CAAAGCAATCGGAGCAGTTT+CGG | 0.402911 | 2.4:+69554802 | None:intergenic |
| ATGCCTTTAAGGGGTCATTA+GGG | 0.414468 | 2.4:+69552870 | None:intergenic |
| GTCCTTTCAGGAAGACCCTC+TGG | 0.415276 | 2.4:+69553399 | None:intergenic |
| CTGTCACCGCCCTGTGACAC+AGG | 0.417724 | 2.4:+69554830 | None:intergenic |
| CCCTCTGGATTATTCTCAAA+TGG | 0.419053 | 2.4:+69553414 | None:intergenic |
| TTCTTTCAAACATGACTAAG+AGG | 0.439390 | 2.4:-69555514 | None:intergenic |
| ATATTCCTTACATTGATCTC+TGG | 0.444800 | 2.4:-69553320 | MS.gene071405:CDS |
| GAGTCGTGCAACTTCATCAA+TGG | 0.457432 | 2.4:+69553573 | None:intergenic |
| TTGAAAAGCAGAGCATCTAC+TGG | 0.476943 | 2.4:+69554745 | None:intergenic |
| ATCCTTTGATGTTGGAGGAT+GGG | 0.480890 | 2.4:-69555453 | MS.gene071405:CDS |
| AAATGCAACAGTTCCCTGAC+TGG | 0.492869 | 2.4:-69553293 | MS.gene071405:CDS |
| ATGAGGATGACTTTACTTGT+CGG | 0.494758 | 2.4:+69553607 | None:intergenic |
| AGTCGTGCAACTTCATCAAT+GGG | 0.507323 | 2.4:+69553574 | None:intergenic |
| AAGAAAACAGTCAAAGCAAT+CGG | 0.513354 | 2.4:+69554791 | None:intergenic |
| CAGGCAGATGTGGTGCTAAG+AGG | 0.513358 | 2.4:-69554905 | MS.gene071405:CDS |
| ACTGAGGAATCCTTTGATGT+TGG | 0.516117 | 2.4:-69555461 | MS.gene071405:CDS |
| AGGCAGATGTGGTGCTAAGA+GGG | 0.519656 | 2.4:-69554904 | MS.gene071405:CDS |
| CAACACGAGGTGGGCACTGA+AGG | 0.520803 | 2.4:-69554870 | MS.gene071405:CDS |
| TTGATGAAGTTGCACGACTC+AGG | 0.521821 | 2.4:-69553570 | MS.gene071405:intron |
| CAATGGGAGGAGGAGTTATG+AGG | 0.526221 | 2.4:+69553590 | None:intergenic |
| AATCCTTTGATGTTGGAGGA+TGG | 0.530232 | 2.4:-69555454 | MS.gene071405:CDS |
| TTGGTCCAGAGATCAATGTA+AGG | 0.532044 | 2.4:+69553315 | None:intergenic |
| GAGGAATCCTTTGATGTTGG+AGG | 0.547556 | 2.4:-69555458 | MS.gene071405:CDS |
| TTCTCCTTGTATTCATGTAG+AGG | 0.550295 | 2.4:+69554716 | None:intergenic |
| ATCCAGAGGGTCTTCCTGAA+AGG | 0.553423 | 2.4:-69553401 | MS.gene071405:CDS |
| GTGTCACAGGGCGGTGACAG+TGG | 0.555563 | 2.4:-69554827 | MS.gene071405:CDS |
| GTGGTGCTAAGAGGGTATAG+TGG | 0.556252 | 2.4:-69554896 | MS.gene071405:CDS |
| TAGGGTCAATATCAGATACA+AGG | 0.556300 | 2.4:+69552888 | None:intergenic |
| CCTTTGAATTTCAGAAGCGA+TGG | 0.564667 | 2.4:-69553630 | MS.gene071405:intron |
| ACCCCATCCTCCAACATCAA+AGG | 0.571101 | 2.4:+69555451 | None:intergenic |
| TCTCCTTGTATTCATGTAGA+GGG | 0.573844 | 2.4:+69554717 | None:intergenic |
| TGCCAACTATTTCTCACGCA+CGG | 0.583852 | 2.4:-69555420 | MS.gene071405:intron |
| TACCGTGCGTGAGAAATAGT+TGG | 0.585214 | 2.4:+69555418 | None:intergenic |
| TGTCCCTCTACATGAATACA+AGG | 0.587200 | 2.4:-69554720 | MS.gene071405:CDS |
| GGTATGGGTTACCTTGAAGA+AGG | 0.588405 | 2.4:+69554676 | None:intergenic |
| TGGTGCTAAGAGGGTATAGT+GGG | 0.591667 | 2.4:-69554895 | MS.gene071405:CDS |
| GAAAGGACTAATGAAGCTGC+TGG | 0.598460 | 2.4:-69553384 | MS.gene071405:CDS |
| GACGGTTTGCATCTAACTAA+CGG | 0.606195 | 2.4:-69552995 | MS.gene071405:CDS |
| GCAACTTCATCAATGGGAGG+AGG | 0.607044 | 2.4:+69553580 | None:intergenic |
| ACTACAGAAATGCCTTTAAG+GGG | 0.608956 | 2.4:+69552861 | None:intergenic |
| TGAAAAGCAGAGCATCTACT+GGG | 0.610569 | 2.4:+69554746 | None:intergenic |
| TACCTTGAAGAAGGAGACAA+TGG | 0.615115 | 2.4:+69554685 | None:intergenic |
| AGGGTCAATATCAGATACAA+GGG | 0.620846 | 2.4:+69552889 | None:intergenic |
| AGAAGGAGACAATGGAGCAA+AGG | 0.621194 | 2.4:+69554693 | None:intergenic |
| GAGGTGGGCACTGAAGGTGT+TGG | 0.628300 | 2.4:-69554864 | MS.gene071405:CDS |
| GTAAGGAATATGACATTCAG+TGG | 0.633665 | 2.4:+69553332 | None:intergenic |
| CCATTTGAGAATAATCCAGA+GGG | 0.637647 | 2.4:-69553414 | MS.gene071405:CDS |
| TGTCACCGCCCTGTGACACA+GGG | 0.639199 | 2.4:+69554831 | None:intergenic |
| TGCTAGAGCATGCATTGCTG+TGG | 0.657710 | 2.4:-69553355 | MS.gene071405:CDS |
| GGGTCAATATCAGATACAAG+GGG | 0.659677 | 2.4:+69552890 | None:intergenic |
| TAACATGTAACAGGCAGATG+TGG | 0.662178 | 2.4:-69554915 | MS.gene071405:intron |
| GTTTGCATCTAACTAACGGA+GGG | 0.673924 | 2.4:-69552991 | MS.gene071405:CDS |
| TCCATTTGAGAATAATCCAG+AGG | 0.677789 | 2.4:-69553415 | MS.gene071405:CDS |
| CGTGCAACTTCATCAATGGG+AGG | 0.679277 | 2.4:+69553577 | None:intergenic |
| GGTATAGTGGGTACAACACG+AGG | 0.696277 | 2.4:-69554883 | MS.gene071405:CDS |
| TAGTGGGTACAACACGAGGT+GGG | 0.715177 | 2.4:-69554879 | MS.gene071405:CDS |
| GGTTTGCATCTAACTAACGG+AGG | 0.720069 | 2.4:-69552992 | MS.gene071405:CDS |
| ATAGTGGGTACAACACGAGG+TGG | 0.732833 | 2.4:-69554880 | MS.gene071405:CDS |
| GGTCAATATCAGATACAAGG+GGG | 0.748357 | 2.4:+69552891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATCATATTACAATT+TGG | + | chr2.4:69553105-69553124 | None:intergenic | 10.0% |
| !! | AATAAATCATATTACAATTT+GGG | + | chr2.4:69553104-69553123 | None:intergenic | 10.0% |
| !!! | ATATTTTTAATTTCAATTCT+AGG | - | chr2.4:69554674-69554693 | MS.gene071405:intron | 10.0% |
| !! | ATATCATTATTTAATGCATA+TGG | - | chr2.4:69555303-69555322 | MS.gene071405:intron | 15.0% |
| !! | GAATAAAATTAGAGTTTAAT+GGG | - | chr2.4:69553724-69553743 | MS.gene071405:intron | 15.0% |
| !! | TATAAACAAAACATATAATG+TGG | + | chr2.4:69553044-69553063 | None:intergenic | 15.0% |
| !! | TATGATTTGATATGAATATA+CGG | - | chr2.4:69555326-69555345 | MS.gene071405:intron | 15.0% |
| !! | TGAATAAAATTAGAGTTTAA+TGG | - | chr2.4:69553723-69553742 | MS.gene071405:intron | 15.0% |
| !! | TTAAACATATAATTCTATAG+AGG | - | chr2.4:69554886-69554905 | MS.gene071405:CDS | 15.0% |
| !! | AAAATCTAAAAACAGAATGT+GGG | + | chr2.4:69553360-69553379 | None:intergenic | 20.0% |
| !! | AATTATACCATTTATACAAG+AGG | + | chr2.4:69554700-69554719 | None:intergenic | 20.0% |
| !! | ACTGGAAAAAAGTTTATTTA+AGG | - | chr2.4:69555090-69555109 | MS.gene071405:intron | 20.0% |
| !! | TAAAATCTAAAAACAGAATG+TGG | + | chr2.4:69553361-69553380 | None:intergenic | 20.0% |
| !! | TATACCTACATATACATTTA+AGG | + | chr2.4:69554639-69554658 | None:intergenic | 20.0% |
| !! | TTATCCTTAAATGTATATGT+AGG | - | chr2.4:69554632-69554651 | MS.gene071405:intron | 20.0% |
| !!! | AAGTTTGAATCTTTTTGTAA+TGG | - | chr2.4:69553386-69553405 | MS.gene071405:CDS | 20.0% |
| !!! | AATTTTATTCAAACTCTGTA+CGG | + | chr2.4:69553714-69553733 | None:intergenic | 20.0% |
| !!! | AGTTTGAATCTTTTTGTAAT+GGG | - | chr2.4:69553387-69553406 | MS.gene071405:CDS | 20.0% |
| ! | AAAGAACAATGATCCTTTAT+TGG | + | chr2.4:69553808-69553827 | None:intergenic | 25.0% |
| ! | AAGAACAATGATCCTTTATT+GGG | + | chr2.4:69553807-69553826 | None:intergenic | 25.0% |
| ! | AATTATGTTATCAGTTGGTT+TGG | - | chr2.4:69554415-69554434 | MS.gene071405:intron | 25.0% |
| ! | AATTTGGAGGTTAATACAAT+AGG | - | chr2.4:69554157-69554176 | MS.gene071405:intron | 25.0% |
| ! | ATCTTTGATCCTTAAAGAAA+GGG | + | chr2.4:69554522-69554541 | None:intergenic | 25.0% |
| ! | TATCTTTGATCCTTAAAGAA+AGG | + | chr2.4:69554523-69554542 | None:intergenic | 25.0% |
| ! | TATTATTGATCATACAGTAG+TGG | + | chr2.4:69554212-69554231 | None:intergenic | 25.0% |
| ! | TCACCAAAAAGATATATTTG+TGG | + | chr2.4:69552877-69552896 | None:intergenic | 25.0% |
| ! | TCTGCTTATAACATTCTTAA+AGG | - | chr2.4:69554543-69554562 | MS.gene071405:intron | 25.0% |
| ! | TTATAATGTTTGTAAAGCTG+TGG | - | chr2.4:69554072-69554091 | MS.gene071405:intron | 25.0% |
| !! | ATTTTATTCAAACTCTGTAC+GGG | + | chr2.4:69553713-69553732 | None:intergenic | 25.0% |
| !! | GTTTGAATCTTTTTGTAATG+GGG | - | chr2.4:69553388-69553407 | MS.gene071405:CDS | 25.0% |
| !! | TTTACCTTCTTTGTTTATCT+TGG | - | chr2.4:69555125-69555144 | MS.gene071405:intron | 25.0% |
| !!! | AAAATAGTTTTGATCTCTTG+TGG | - | chr2.4:69553866-69553885 | MS.gene071405:intron | 25.0% |
| !!! | AAATAAACTTTTTTCCAGTC+AGG | + | chr2.4:69555089-69555108 | None:intergenic | 25.0% |
| !!! | AATAAACTTTTTTCCAGTCA+GGG | + | chr2.4:69555088-69555107 | None:intergenic | 25.0% |
| !!! | TCTTTTGAAAAGGATAAATG+AGG | - | chr2.4:69553419-69553438 | MS.gene071405:CDS | 25.0% |
| AAAGCAAAACAAAGCAAGAA+TGG | + | chr2.4:69552977-69552996 | None:intergenic | 30.0% | |
| AAAGGATCATTGTTCTTTAG+TGG | - | chr2.4:69553810-69553829 | MS.gene071405:intron | 30.0% | |
| AACTGATAACATAATTGCAC+AGG | + | chr2.4:69554411-69554430 | None:intergenic | 30.0% | |
| AAGAAAACAGTCAAAGCAAT+CGG | + | chr2.4:69553577-69553596 | None:intergenic | 30.0% | |
| ACAATAGGTGATGTTAAATG+TGG | - | chr2.4:69554172-69554191 | MS.gene071405:intron | 30.0% | |
| ATAAAAAAGCTGAGAGATGA+AGG | - | chr2.4:69555421-69555440 | MS.gene071405:CDS | 30.0% | |
| ATATTCCTTACATTGATCTC+TGG | - | chr2.4:69555045-69555064 | MS.gene071405:intron | 30.0% | |
| ATGAACATTGATCAACCTAT+GGG | + | chr2.4:69554593-69554612 | None:intergenic | 30.0% | |
| CACATTCTAATAATGTTGCA+TGG | - | chr2.4:69553995-69554014 | MS.gene071405:intron | 30.0% | |
| CATAACTCAAGTCACATATA+TGG | + | chr2.4:69555246-69555265 | None:intergenic | 30.0% | |
| GTTGACATTGAGTTTATAAG+TGG | - | chr2.4:69553153-69553172 | MS.gene071405:intron | 30.0% | |
| GTTTGTTTGTAACATGTAAC+AGG | - | chr2.4:69553441-69553460 | MS.gene071405:intron | 30.0% | |
| TAAGCCAAGATAAACAAAGA+AGG | + | chr2.4:69555132-69555151 | None:intergenic | 30.0% | |
| TGTGCAATTATGTTATCAGT+TGG | - | chr2.4:69554410-69554429 | MS.gene071405:intron | 30.0% | |
| ! | AGGCCACAAATATATCTTTT+TGG | - | chr2.4:69552871-69552890 | MS.gene071405:CDS | 30.0% |
| ! | ATTGCTTTGACTGTTTTCTT+TGG | - | chr2.4:69553577-69553596 | MS.gene071405:CDS | 30.0% |
| ! | TTGCTTTGACTGTTTTCTTT+GGG | - | chr2.4:69553578-69553597 | MS.gene071405:CDS | 30.0% |
| ! | TTTATTAGTCTCATCGTGTT+AGG | - | chr2.4:69553073-69553092 | MS.gene071405:intron | 30.0% |
| !! | GGTTTGTGTTTCTTTTGAAA+AGG | - | chr2.4:69553409-69553428 | MS.gene071405:CDS | 30.0% |
| !!! | AAGTTTTTTTTACACTTGCG+TGG | - | chr2.4:69554567-69554586 | MS.gene071405:intron | 30.0% |
| AAGAATGGTCCCTTTCTTTA+AGG | - | chr2.4:69554510-69554529 | MS.gene071405:intron | 35.0% | |
| AAGCATGGAATCAAACTCTT+TGG | + | chr2.4:69554241-69554260 | None:intergenic | 35.0% | |
| ACTGTGTTGAAACCCAATAA+AGG | - | chr2.4:69553792-69553811 | MS.gene071405:intron | 35.0% | |
| AGGGTCAATATCAGATACAA+GGG | + | chr2.4:69555479-69555498 | None:intergenic | 35.0% | |
| AGTAATGGCACAAAGAAAGA+AGG | + | chr2.4:69554383-69554402 | None:intergenic | 35.0% | |
| AGTGTCTGATCTTGATCAAA+CGG | - | chr2.4:69553271-69553290 | MS.gene071405:intron | 35.0% | |
| ATGAGGATGACTTTACTTGT+CGG | + | chr2.4:69554761-69554780 | None:intergenic | 35.0% | |
| ATTCATTGGAATCACGCATT+CGG | - | chr2.4:69553194-69553213 | MS.gene071405:intron | 35.0% | |
| CATGAACATTGATCAACCTA+TGG | + | chr2.4:69554594-69554613 | None:intergenic | 35.0% | |
| CCATTTGAGAATAATCCAGA+GGG | - | chr2.4:69554951-69554970 | MS.gene071405:intron | 35.0% | |
| GAGTTTATAAGTGGTGAAAC+TGG | - | chr2.4:69553162-69553181 | MS.gene071405:intron | 35.0% | |
| GTAAGGAATATGACATTCAG+TGG | + | chr2.4:69555036-69555055 | None:intergenic | 35.0% | |
| TAGGGTCAATATCAGATACA+AGG | + | chr2.4:69555480-69555499 | None:intergenic | 35.0% | |
| TCATGTGAGCTGTTAAGTAT+AGG | - | chr2.4:69554440-69554459 | MS.gene071405:intron | 35.0% | |
| TCCATTTGAGAATAATCCAG+AGG | - | chr2.4:69554950-69554969 | MS.gene071405:intron | 35.0% | |
| TCTCCTTGTATTCATGTAGA+GGG | + | chr2.4:69553651-69553670 | None:intergenic | 35.0% | |
| TGGATTTGATAAGTGTGCTT+TGG | - | chr2.4:69553886-69553905 | MS.gene071405:intron | 35.0% | |
| TTCTAGGCCTCTTGTATAAA+TGG | - | chr2.4:69554690-69554709 | MS.gene071405:CDS | 35.0% | |
| TTCTCCTTGTATTCATGTAG+AGG | + | chr2.4:69553652-69553671 | None:intergenic | 35.0% | |
| ! | AGAAAGAAGGCATGATGTTT+AGG | + | chr2.4:69554370-69554389 | None:intergenic | 35.0% |
| ! | TCTTTCTTTGTGCCATTACT+TGG | - | chr2.4:69554383-69554402 | MS.gene071405:intron | 35.0% |
| ! | TGCTTTGACTGTTTTCTTTG+GGG | - | chr2.4:69553579-69553598 | MS.gene071405:CDS | 35.0% |
| ! | TTGATTCCATGCTTTTCTGT+GGG | - | chr2.4:69554247-69554266 | MS.gene071405:intron | 35.0% |
| ! | TTTGATTCCATGCTTTTCTG+TGG | - | chr2.4:69554246-69554265 | MS.gene071405:intron | 35.0% |
| !! | CGACTCAGGTATTGTTTTAT+TGG | - | chr2.4:69554809-69554828 | MS.gene071405:CDS | 35.0% |
| AATCCTTTGATGTTGGAGGA+TGG | - | chr2.4:69552911-69552930 | MS.gene071405:CDS | 40.0% | |
| AATGGGTATGCACACAATGA+GGG | - | chr2.4:69553741-69553760 | MS.gene071405:intron | 40.0% | |
| ACTGAGGAATCCTTTGATGT+TGG | - | chr2.4:69552904-69552923 | MS.gene071405:CDS | 40.0% | |
| ACTGGATTCCATGCATTCAT+TGG | - | chr2.4:69553180-69553199 | MS.gene071405:intron | 40.0% | |
| AGTCGTGCAACTTCATCAAT+GGG | + | chr2.4:69554794-69554813 | None:intergenic | 40.0% | |
| ATAGGCATGCATGTTAGCAA+TGG | - | chr2.4:69554458-69554477 | MS.gene071405:intron | 40.0% | |
| ATCCTTTGATGTTGGAGGAT+GGG | - | chr2.4:69552912-69552931 | MS.gene071405:CDS | 40.0% | |
| ATTCAAACTCTGTACGGGTA+TGG | + | chr2.4:69553708-69553727 | None:intergenic | 40.0% | |
| ATTGCACAGGAACCAAGTAA+TGG | + | chr2.4:69554398-69554417 | None:intergenic | 40.0% | |
| CAAATTCCTGAAATCCCACA+GGG | + | chr2.4:69554143-69554162 | None:intergenic | 40.0% | |
| CCCTCTGGATTATTCTCAAA+TGG | + | chr2.4:69554954-69554973 | None:intergenic | 40.0% | |
| CCTTTGAATTTCAGAAGCGA+TGG | - | chr2.4:69554735-69554754 | MS.gene071405:CDS | 40.0% | |
| CTCAAATTGTCGACCACTTA+TGG | + | chr2.4:69553327-69553346 | None:intergenic | 40.0% | |
| GACGGTTTGCATCTAACTAA+CGG | - | chr2.4:69555370-69555389 | MS.gene071405:intron | 40.0% | |
| GAGAACGAAAAGTTTCTCTC+TGG | - | chr2.4:69554047-69554066 | MS.gene071405:intron | 40.0% | |
| GGAAAACCAACCTCTACTTT+AGG | - | chr2.4:69554482-69554501 | MS.gene071405:intron | 40.0% | |
| GGGTCAATATCAGATACAAG+GGG | + | chr2.4:69555478-69555497 | None:intergenic | 40.0% | |
| GGTCAATATCAGATACAAGG+GGG | + | chr2.4:69555477-69555496 | None:intergenic | 40.0% | |
| GTACGAGATGCTTGTGTAAA+AGG | - | chr2.4:69554280-69554299 | MS.gene071405:intron | 40.0% | |
| GTGATGTTAAATGTGGACTC+TGG | - | chr2.4:69554179-69554198 | MS.gene071405:intron | 40.0% | |
| GTTTGCATCTAACTAACGGA+GGG | - | chr2.4:69555374-69555393 | MS.gene071405:intron | 40.0% | |
| TAACATGTAACAGGCAGATG+TGG | - | chr2.4:69553450-69553469 | MS.gene071405:intron | 40.0% | |
| TACCTTGAAGAAGGAGACAA+TGG | + | chr2.4:69553683-69553702 | None:intergenic | 40.0% | |
| TAGGCATGCATGTTAGCAAT+GGG | - | chr2.4:69554459-69554478 | MS.gene071405:intron | 40.0% | |
| TGTCCCTCTACATGAATACA+AGG | - | chr2.4:69553645-69553664 | MS.gene071405:intron | 40.0% | |
| TGTTTACCGAAATGCAGTGA+CGG | - | chr2.4:69555352-69555371 | MS.gene071405:intron | 40.0% | |
| TTCAAACTCTGTACGGGTAT+GGG | + | chr2.4:69553707-69553726 | None:intergenic | 40.0% | |
| TTCATTGGAATCACGCATTC+GGG | - | chr2.4:69553195-69553214 | MS.gene071405:intron | 40.0% | |
| TTCTTCCACTCCTAAAGTAG+AGG | + | chr2.4:69554495-69554514 | None:intergenic | 40.0% | |
| TTGGTCCAGAGATCAATGTA+AGG | + | chr2.4:69555053-69555072 | None:intergenic | 40.0% | |
| TTTGGTCGCGTATATATTGC+AGG | - | chr2.4:69553904-69553923 | MS.gene071405:intron | 40.0% | |
| ! | AATGCCTTTAAGGGGTCATT+AGG | + | chr2.4:69555499-69555518 | None:intergenic | 40.0% |
| ! | ATGCCTTTAAGGGGTCATTA+GGG | + | chr2.4:69555498-69555517 | None:intergenic | 40.0% |
| ! | CTACTTTAGGAGTGGAAGAA+TGG | - | chr2.4:69554495-69554514 | MS.gene071405:intron | 40.0% |
| ! | TAATGGGTATGCACACAATG+AGG | - | chr2.4:69553740-69553759 | MS.gene071405:intron | 40.0% |
| ! | TGAAAAGCAGAGCATCTACT+GGG | + | chr2.4:69553622-69553641 | None:intergenic | 40.0% |
| ! | TTGAAAAGCAGAGCATCTAC+TGG | + | chr2.4:69553623-69553642 | None:intergenic | 40.0% |
| !! | CCATCGCTTCTGAAATTCAA+AGG | + | chr2.4:69554738-69554757 | None:intergenic | 40.0% |
| !! | TTTTGGTGACTCAATCACTG+AGG | - | chr2.4:69552888-69552907 | MS.gene071405:CDS | 40.0% |
| AAATGCAACAGTTCCCTGAC+TGG | - | chr2.4:69555072-69555091 | MS.gene071405:intron | 45.0% | |
| AATACCTGAATGCGAAGAGC+CGG | - | chr2.4:69553299-69553318 | MS.gene071405:CDS | 45.0% | |
| ACGGCTATAGTGTAGGACTA+GGG | - | chr2.4:69554103-69554122 | MS.gene071405:intron | 45.0% | |
| AGAAGGAGACAATGGAGCAA+AGG | + | chr2.4:69553675-69553694 | None:intergenic | 45.0% | |
| AGGCATGCATGTTAGCAATG+GGG | - | chr2.4:69554460-69554479 | MS.gene071405:intron | 45.0% | |
| CAAAGCAATCGGAGCAGTTT+CGG | + | chr2.4:69553566-69553585 | None:intergenic | 45.0% | |
| CCAAATTCCTGAAATCCCAC+AGG | + | chr2.4:69554144-69554163 | None:intergenic | 45.0% | |
| CCTGTGGGATTTCAGGAATT+TGG | - | chr2.4:69554141-69554160 | MS.gene071405:intron | 45.0% | |
| CTCCATTGTCTCCTTCTTCA+AGG | - | chr2.4:69553678-69553697 | MS.gene071405:intron | 45.0% | |
| GAAAGGACTAATGAAGCTGC+TGG | - | chr2.4:69554981-69555000 | MS.gene071405:intron | 45.0% | |
| GAGGAATCCTTTGATGTTGG+AGG | - | chr2.4:69552907-69552926 | MS.gene071405:CDS | 45.0% | |
| GAGTCGTGCAACTTCATCAA+TGG | + | chr2.4:69554795-69554814 | None:intergenic | 45.0% | |
| GCAGCTTCATTAGTCCTTTC+AGG | + | chr2.4:69554981-69555000 | None:intergenic | 45.0% | |
| GCGTGATTCCAATGAATGCA+TGG | + | chr2.4:69553191-69553210 | None:intergenic | 45.0% | |
| GGTTTGCATCTAACTAACGG+AGG | - | chr2.4:69555373-69555392 | MS.gene071405:intron | 45.0% | |
| GTATGCACACAATGAGGGAT+TGG | - | chr2.4:69553746-69553765 | MS.gene071405:intron | 45.0% | |
| GTGGGATTTCAGGAATTTGG+AGG | - | chr2.4:69554144-69554163 | MS.gene071405:intron | 45.0% | |
| TACCGTGCGTGAGAAATAGT+TGG | + | chr2.4:69552950-69552969 | None:intergenic | 45.0% | |
| TCCACTCCTAAAGTAGAGGT+TGG | + | chr2.4:69554491-69554510 | None:intergenic | 45.0% | |
| TCCATTCCCACAGAAAAGCA+TGG | + | chr2.4:69554256-69554275 | None:intergenic | 45.0% | |
| TCCTTTGATGTTGGAGGATG+GGG | - | chr2.4:69552913-69552932 | MS.gene071405:CDS | 45.0% | |
| TGACCCTAATGACCCCTTAA+AGG | - | chr2.4:69555492-69555511 | MS.gene071405:CDS | 45.0% | |
| TGCAAACCGTCACTGCATTT+CGG | + | chr2.4:69555361-69555380 | None:intergenic | 45.0% | |
| TTGATGAAGTTGCACGACTC+AGG | - | chr2.4:69554795-69554814 | MS.gene071405:CDS | 45.0% | |
| TTGTCGACCACTTATGGATC+CGG | + | chr2.4:69553321-69553340 | None:intergenic | 45.0% | |
| TTGTTCTTTAGTGGCACAGC+AGG | - | chr2.4:69553819-69553838 | MS.gene071405:intron | 45.0% | |
| ! | ACCAACCTCTACTTTAGGAG+TGG | - | chr2.4:69554487-69554506 | MS.gene071405:intron | 45.0% |
| ! | AGAGTTTTCCCTGTGTCACA+GGG | - | chr2.4:69553526-69553545 | MS.gene071405:intron | 45.0% |
| ! | AGGGATTGGCACAGATTATC+AGG | - | chr2.4:69553760-69553779 | MS.gene071405:intron | 45.0% |
| ! | CTTTTCTGTGGGAATGGAGT+TGG | - | chr2.4:69554258-69554277 | MS.gene071405:intron | 45.0% |
| ! | GGTATGGGTTACCTTGAAGA+AGG | + | chr2.4:69553692-69553711 | None:intergenic | 45.0% |
| ! | GTCAGGGAACTGTTGCATTT+TGG | + | chr2.4:69555072-69555091 | None:intergenic | 45.0% |
| ! | TCCATGCTTTTCTGTGGGAA+TGG | - | chr2.4:69554252-69554271 | MS.gene071405:intron | 45.0% |
| ! | TGCCAACTATTTCTCACGCA+CGG | - | chr2.4:69552945-69552964 | MS.gene071405:CDS | 45.0% |
| ! | TGGTGCTAAGAGGGTATAGT+GGG | - | chr2.4:69553470-69553489 | MS.gene071405:intron | 45.0% |
| !! | TCTTCGCATTCAGGTATTGG+TGG | + | chr2.4:69553297-69553316 | None:intergenic | 45.0% |
| !! | AATAAAAAAAATAAAAAAAG+TGG | + | chr2.4:69554307-69554326 | None:intergenic | 5.0% |
| !!! | AATAATAATTATTTTTCATT+TGG | - | chr2.4:69553934-69553953 | MS.gene071405:intron | 5.0% |
| ACAGTGCACGGCTATAGTGT+AGG | - | chr2.4:69554096-69554115 | MS.gene071405:intron | 50.0% | |
| ACCCCATCCTCCAACATCAA+AGG | + | chr2.4:69552917-69552936 | None:intergenic | 50.0% | |
| ATCCAGAGGGTCTTCCTGAA+AGG | - | chr2.4:69554964-69554983 | MS.gene071405:intron | 50.0% | |
| CAATGGGAGGAGGAGTTATG+AGG | + | chr2.4:69554778-69554797 | None:intergenic | 50.0% | |
| CACGGCTATAGTGTAGGACT+AGG | - | chr2.4:69554102-69554121 | MS.gene071405:intron | 50.0% | |
| CGTGCAACTTCATCAATGGG+AGG | + | chr2.4:69554791-69554810 | None:intergenic | 50.0% | |
| GATACAAGGGGGAGATCAAC+TGG | + | chr2.4:69555466-69555485 | None:intergenic | 50.0% | |
| GCAACTTCATCAATGGGAGG+AGG | + | chr2.4:69554788-69554807 | None:intergenic | 50.0% | |
| GGCATGCATGTTAGCAATGG+GGG | - | chr2.4:69554461-69554480 | MS.gene071405:intron | 50.0% | |
| GGCTCTTCGCATTCAGGTAT+TGG | + | chr2.4:69553300-69553319 | None:intergenic | 50.0% | |
| TAAAGCTGTGGCACAGTGCA+CGG | - | chr2.4:69554084-69554103 | MS.gene071405:intron | 50.0% | |
| TGCTAGAGCATGCATTGCTG+TGG | - | chr2.4:69555010-69555029 | MS.gene071405:intron | 50.0% | |
| TTCTTTAGTGGCACAGCAGG+AGG | - | chr2.4:69553822-69553841 | MS.gene071405:intron | 50.0% | |
| TTTACACTTGCGTGGCCCAT+AGG | - | chr2.4:69554575-69554594 | MS.gene071405:intron | 50.0% | |
| ! | AGGCAGATGTGGTGCTAAGA+GGG | - | chr2.4:69553461-69553480 | MS.gene071405:intron | 50.0% |
| ! | CAGAGTTTTCCCTGTGTCAC+AGG | - | chr2.4:69553525-69553544 | MS.gene071405:intron | 50.0% |
| ! | GTGGTGCTAAGAGGGTATAG+TGG | - | chr2.4:69553469-69553488 | MS.gene071405:intron | 50.0% |
| ! | TAGTGGGTACAACACGAGGT+GGG | - | chr2.4:69553486-69553505 | MS.gene071405:intron | 50.0% |
| !! | ATAGTGGGTACAACACGAGG+TGG | - | chr2.4:69553485-69553504 | MS.gene071405:intron | 50.0% |
| !! | GGTATAGTGGGTACAACACG+AGG | - | chr2.4:69553482-69553501 | MS.gene071405:intron | 50.0% |
| ACATGGCCCTGTGGGATTTC+AGG | - | chr2.4:69554134-69554153 | MS.gene071405:intron | 55.0% | |
| CGAAGAGCCGGATCCATAAG+TGG | - | chr2.4:69553311-69553330 | MS.gene071405:CDS | 55.0% | |
| GTCCTTTCAGGAAGACCCTC+TGG | + | chr2.4:69554969-69554988 | None:intergenic | 55.0% | |
| ! | CAGGCAGATGTGGTGCTAAG+AGG | - | chr2.4:69553460-69553479 | MS.gene071405:intron | 55.0% |
| ! | GTTTTCCCTGTGTCACAGGG+CGG | - | chr2.4:69553529-69553548 | MS.gene071405:intron | 55.0% |
| ATGCACGCACATGGCCCTGT+GGG | - | chr2.4:69554126-69554145 | MS.gene071405:intron | 60.0% | |
| GGACTAGGGATGCACGCACA+TGG | - | chr2.4:69554117-69554136 | MS.gene071405:intron | 60.0% | |
| GGATCCGGCTCTTCGCATTC+AGG | + | chr2.4:69553306-69553325 | None:intergenic | 60.0% | |
| TGTCACCGCCCTGTGACACA+GGG | + | chr2.4:69553537-69553556 | None:intergenic | 60.0% | |
| !! | CAACACGAGGTGGGCACTGA+AGG | - | chr2.4:69553495-69553514 | MS.gene071405:intron | 60.0% |
| !! | GAGGTGGGCACTGAAGGTGT+TGG | - | chr2.4:69553501-69553520 | MS.gene071405:intron | 60.0% |
| CTGTCACCGCCCTGTGACAC+AGG | + | chr2.4:69553538-69553557 | None:intergenic | 65.0% | |
| GATGCACGCACATGGCCCTG+TGG | - | chr2.4:69554125-69554144 | MS.gene071405:intron | 65.0% | |
| GTGTCACAGGGCGGTGACAG+TGG | - | chr2.4:69553538-69553557 | MS.gene071405:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 69552862 | 69555525 | 69552862 | ID=MS.gene071405 |
| chr2.4 | mRNA | 69552862 | 69555525 | 69552862 | ID=MS.gene071405.t1;Parent=MS.gene071405 |
| chr2.4 | exon | 69555421 | 69555525 | 69555421 | ID=MS.gene071405.t1.exon1;Parent=MS.gene071405.t1 |
| chr2.4 | CDS | 69555421 | 69555525 | 69555421 | ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1 |
| chr2.4 | exon | 69554688 | 69554924 | 69554688 | ID=MS.gene071405.t1.exon2;Parent=MS.gene071405.t1 |
| chr2.4 | CDS | 69554688 | 69554924 | 69554688 | ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1 |
| chr2.4 | exon | 69553571 | 69553638 | 69553571 | ID=MS.gene071405.t1.exon3;Parent=MS.gene071405.t1 |
| chr2.4 | CDS | 69553571 | 69553638 | 69553571 | ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1 |
| chr2.4 | exon | 69553276 | 69553440 | 69553276 | ID=MS.gene071405.t1.exon4;Parent=MS.gene071405.t1 |
| chr2.4 | CDS | 69553276 | 69553440 | 69553276 | ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1 |
| chr2.4 | exon | 69552862 | 69553018 | 69552862 | ID=MS.gene071405.t1.exon5;Parent=MS.gene071405.t1 |
| chr2.4 | CDS | 69552862 | 69553018 | 69552862 | ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1 |
| Gene Sequence |
| Protein sequence |
