AlfalfaGEDB | MS.gene071405

M. sativa cultivar XinJiangDaYe / MS.gene071405

KEGG: K23978
GO: -
PFAM: PF13472.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071405.t1	XP_003593727.1	96.7	243	8	0	1	243	1	243	3.70E-138	500.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071405.t1	Q6NMR9	68.9	241	68	2	4	242	3	238	2.5e-95	349.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071405.t1	G7IK96	96.7	243	8	0	1	243	1	243	2.7e-138	500.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049298	MS.gene071405	0.830363	3.06E-55	-1.69E-46
MS.gene04932	MS.gene071405	0.815632	8.37E-52	-1.69E-46
MS.gene050338	MS.gene071405	0.813859	2.07E-51	-1.69E-46
MS.gene050444	MS.gene071405	-0.802334	5.89E-49	-1.69E-46
MS.gene050710	MS.gene071405	0.807478	4.96E-50	-1.69E-46
MS.gene051552	MS.gene071405	0.808784	2.61E-50	-1.69E-46
MS.gene052223	MS.gene071405	0.81577	7.80E-52	-1.69E-46
MS.gene052308	MS.gene071405	0.801012	1.10E-48	-1.69E-46
MS.gene05240	MS.gene071405	0.802838	4.64E-49	-1.69E-46
MS.gene052705	MS.gene071405	0.809832	1.56E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene008064	MS.gene071405	PPI
MS.gene031984	MS.gene071405	PPI
MS.gene071405	MS.gene56873	PPI
MS.gene071405	MS.gene48374	PPI
MS.gene071405	MS.gene057336	PPI
MS.gene071405	MS.gene69231	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071405.t1	MTR_2g015500	96.708	243	8	0	1	243	1	243	3.08e-180	494
MS.gene071405.t1	MTR_2g015510	84.298	242	36	1	2	243	3	242	3.81e-156	433
MS.gene071405.t1	MTR_2g015480	67.249	229	58	4	12	239	65	277	2.09e-98	290
MS.gene071405.t1	MTR_4g105680	45.249	221	112	2	25	242	51	265	5.05e-58	185
MS.gene071405.t1	MTR_7g068550	41.981	212	113	3	4	215	6	207	4.49e-54	175
MS.gene071405.t1	MTR_4g016510	38.136	236	134	4	4	235	6	233	1.09e-51	169
MS.gene071405.t1	MTR_7g068530	38.075	239	134	4	4	238	6	234	1.80e-50	165
MS.gene071405.t1	MTR_7g068460	38.318	214	122	4	2	215	31	234	1.25e-47	159
MS.gene071405.t1	MTR_7g068500	37.850	214	123	4	2	215	30	233	6.79e-46	154
MS.gene071405.t1	MTR_7g068470	36.620	213	123	6	4	215	2	203	8.21e-44	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071405.t1	AT5G45920	68.880	241	68	2	4	242	3	238	2.57e-122	348
MS.gene071405.t1	AT5G45920	68.880	241	68	2	4	242	3	238	2.57e-122	348
MS.gene071405.t1	AT5G45920	72.043	186	45	2	4	187	3	183	1.90e-96	280
MS.gene071405.t1	AT5G45920	72.043	186	45	2	4	187	3	183	1.90e-96	280
MS.gene071405.t1	AT5G62930	52.066	242	107	2	4	242	2	237	2.21e-83	249
MS.gene071405.t1	AT5G62930	52.066	242	107	2	4	242	28	263	7.88e-83	248
MS.gene071405.t1	AT5G62930	49.438	178	87	1	68	242	2	179	8.00e-54	172
MS.gene071405.t1	AT2G38180	38.627	233	129	4	4	232	6	228	9.91e-48	160
MS.gene071405.t1	AT3G11210	35.246	244	139	6	4	241	6	236	1.57e-45	153

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Find 67 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCAACAGTTCCCTGAC+TGG	0.492869	2.4:-69553293	MS.gene071405:CDS
AAGAAAACAGTCAAAGCAAT+CGG	0.513354	2.4:+69554791	None:intergenic
AATCCTTTGATGTTGGAGGA+TGG	0.530232	2.4:-69555454	MS.gene071405:CDS
AATGCCTTTAAGGGGTCATT+AGG	0.307170	2.4:+69552869	None:intergenic
ACCCCATCCTCCAACATCAA+AGG	0.571101	2.4:+69555451	None:intergenic
ACTACAGAAATGCCTTTAAG+GGG	0.608956	2.4:+69552861	None:intergenic
ACTGAGGAATCCTTTGATGT+TGG	0.516117	2.4:-69555461	MS.gene071405:CDS
AGAAGGAGACAATGGAGCAA+AGG	0.621194	2.4:+69554693	None:intergenic
AGGCAGATGTGGTGCTAAGA+GGG	0.519656	2.4:-69554904	MS.gene071405:CDS
AGGGTCAATATCAGATACAA+GGG	0.620846	2.4:+69552889	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCAAAACAAAGCAAGAA+TGG	+	chr2.4:69552977-69552996	None:intergenic	30.0%
AAAGGATCATTGTTCTTTAG+TGG	-	chr2.4:69553810-69553829	MS.gene071405:intron	30.0%
AACTGATAACATAATTGCAC+AGG	+	chr2.4:69554411-69554430	None:intergenic	30.0%
AAGAAAACAGTCAAAGCAAT+CGG	+	chr2.4:69553577-69553596	None:intergenic	30.0%
ACAATAGGTGATGTTAAATG+TGG	-	chr2.4:69554172-69554191	MS.gene071405:intron	30.0%
ATAAAAAAGCTGAGAGATGA+AGG	-	chr2.4:69555421-69555440	MS.gene071405:CDS	30.0%
ATATTCCTTACATTGATCTC+TGG	-	chr2.4:69555045-69555064	MS.gene071405:intron	30.0%
ATGAACATTGATCAACCTAT+GGG	+	chr2.4:69554593-69554612	None:intergenic	30.0%
CACATTCTAATAATGTTGCA+TGG	-	chr2.4:69553995-69554014	MS.gene071405:intron	30.0%
CATAACTCAAGTCACATATA+TGG	+	chr2.4:69555246-69555265	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	69552862	69555525	69552862	ID=MS.gene071405
chr2.4	mRNA	69552862	69555525	69552862	ID=MS.gene071405.t1;Parent=MS.gene071405
chr2.4	exon	69555421	69555525	69555421	ID=MS.gene071405.t1.exon1;Parent=MS.gene071405.t1
chr2.4	CDS	69555421	69555525	69555421	ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1
chr2.4	exon	69554688	69554924	69554688	ID=MS.gene071405.t1.exon2;Parent=MS.gene071405.t1
chr2.4	CDS	69554688	69554924	69554688	ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1
chr2.4	exon	69553571	69553638	69553571	ID=MS.gene071405.t1.exon3;Parent=MS.gene071405.t1
chr2.4	CDS	69553571	69553638	69553571	ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1
chr2.4	exon	69553276	69553440	69553276	ID=MS.gene071405.t1.exon4;Parent=MS.gene071405.t1
chr2.4	CDS	69553276	69553440	69553276	ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1
chr2.4	exon	69552862	69553018	69552862	ID=MS.gene071405.t1.exon5;Parent=MS.gene071405.t1
chr2.4	CDS	69552862	69553018	69552862	ID=cds.MS.gene071405.t1;Parent=MS.gene071405.t1

Gene Sequence

>MS.gene071405

ATGACTAAGAGGCCACAAATATATCTTTTTGGTGACTCAATCACTGAGGAATCCTTTGATGTTGGAGGATGGGGTGCTTCTCTTGCCAACTATTTCTCACGCACGGTAACATCCATTCTTGCTTTGTTTTGCTTTAACAACTCATATTTTCATATCTGATTCATGTTCTTGTTAACATTCCACATTATATGTTTTGTTTATAAATGATTTATTTATTAGTCTCATCGTGTTAGGTGCAACCCAAATTGTAATATGATTTATTTATTAGTCTCGTCGTGTTGAGAATCTCACGTTGACATTGAGTTTATAAGTGGTGAAACTGGATTCCATGCATTCATTGGAATCACGCATTCGGGACATTGTTGATCGTTCTAAATTTTTTATTTCAAAATATAGAAATTGAATCTAAAGTGTCTGATCTTGATCAAACGGCCACCAATACCTGAATGCGAAGAGCCGGATCCATAAGTGGTCGACAATTTGAGTTAATTGTATCCCACATTCTGTTTTTAGATTTTAATGTAAAGTTTGAATCTTTTTGTAATGGGGTTTGTGTTTCTTTTGAAAAGGATAAATGAGGTTTGTTTGTAACATGTAACAGGCAGATGTGGTGCTAAGAGGGTATAGTGGGTACAACACGAGGTGGGCACTGAAGGTGTTGGACAGAGTTTTCCCTGTGTCACAGGGCGGTGACAGTGGAACCGAAACTGCTCCGATTGCTTTGACTGTTTTCTTTGGGGCTAATGACGCTTGTCTTCCCAGTAGATGCTCTGCTTTTCAACATGTCCCTCTACATGAATACAAGGAGAACCTTTGCTCCATTGTCTCCTTCTTCAAGGTAACCCATACCCGTACAGAGTTTGAATAAAATTAGAGTTTAATGGGTATGCACACAATGAGGGATTGGCACAGATTATCAGGTAAAAGACTACTGTGTTGAAACCCAATAAAGGATCATTGTTCTTTAGTGGCACAGCAGGAGGCTTTTTTCTTGAAAAAAAAAAAAAATAGTTTTGATCTCTTGTGGATTTGATAAGTGTGCTTTGGTCGCGTATATATTGCAGGTTACAGAAATAATAATTATTTTTCATTTGGAAGTTTGTCGCTGTTATGATTATTTAAGTATAGTCTTGCACATTCTAATAATGTTGCATGGCGCATTAGCTATTGCAACTGTTAGATCTAGAGAACGAAAAGTTTCTCTCTGGATTTATAATGTTTGTAAAGCTGTGGCACAGTGCACGGCTATAGTGTAGGACTAGGGATGCACGCACATGGCCCTGTGGGATTTCAGGAATTTGGAGGTTAATACAATAGGTGATGTTAAATGTGGACTCTGGCTTTTTGCCACTACTGTATGATCAATAATACACACTCCAAAGAGTTTGATTCCATGCTTTTCTGTGGGAATGGAGTTGGTACGAGATGCTTGTGTAAAAGGTCCACTTTTTTTATTTTTTTTATTGAATTGAGTCTAGCATTGTTGTTAGCGTTGTTTTGACAAACCTAAACATCATGCCTTCTTTCTTTGTGCCATTACTTGGTTCCTGTGCAATTATGTTATCAGTTGGTTTGGTCTCATGTGAGCTGTTAAGTATAGGCATGCATGTTAGCAATGGGGGAAAACCAACCTCTACTTTAGGAGTGGAAGAATGGTCCCTTTCTTTAAGGATCAAAGATATCTGCTTATAACATTCTTAAAGGAAAGTTTTTTTTACACTTGCGTGGCCCATAGGTTGATCAATGTTCATGCTTATATTAAGAAAATTGTTATCCTTAAATGTATATGTAGGTATATAAGTTGACGCTTGAATATTTTTAATTTCAATTCTAGGCCTCTTGTATAAATGGTATAATTAGACACTGCAAATTTCCTTTGAATTTCAGAAGCGATGGCCGACAAGTAAAGTCATCCTCATAACTCCTCCTCCCATTGATGAAGTTGCACGACTCAGGTATTGTTTTATTGGCTTTTTATCTTCATTTTGTCACTGATTTTATTATGTTTTCTTTGTTTGTGACATTTAAACATATAATTCTATAGAGGTTAATCACACTTGAAGAATTTCTAAAAATCTATGACAGATATCCATTTGAGAATAATCCAGAGGGTCTTCCTGAAAGGACTAATGAAGCTGCTGGTGAATATGCTAGAGCATGCATTGCTGTGGCCACTGAATGTCATATTCCTTACATTGATCTCTGGACCAAAATGCAACAGTTCCCTGACTGGAAAAAAGTTTATTTAAGGTTTATAATTTATTTTACCTTCTTTGTTTATCTTGGCTTACAACATTTTGCATTTTTGCATCATACATATAAAAGCTTACGAAGTTTTCATTGCTGACTTGATTGATTTTTCAAAATGATCAATTCTGTAGCCATATATGTGACTTGAGTTATGCGAAAATGACTAATTCTGTATGAATTTGCAAAGAATAATATCATTATTTAATGCATATGGTATGATTTGATATGAATATACGGTTTTGTTTACCGAAATGCAGTGACGGTTTGCATCTAACTAACGGAGGGAATCAACTTGTATTTGAAGAAGTAATAAAAAAGCTGAGAGATGAAGGTTTGAGTCTAGAATCTATTCCAGTTGATCTCCCCCTTGTATCTGATATTGACCCTAATGACCCCTTAAAGGCATTTCTGTAG

Protein sequence

>MS.gene071405.t1

MTKRPQIYLFGDSITEESFDVGGWGASLANYFSRTADVVLRGYSGYNTRWALKVLDRVFPVSQGGDSGTETAPIALTVFFGANDACLPSRCSAFQHVPLHEYKENLCSIVSFFKKRWPTSKVILITPPPIDEVARLRYPFENNPEGLPERTNEAAGEYARACIAVATECHIPYIDLWTKMQQFPDWKKVYLSDGLHLTNGGNQLVFEEVIKKLRDEGLSLESIPVDLPLVSDIDPNDPLKAFL