AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072532

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072532.t1 MTR_7g112550 95.439 285 13 0 1 285 1 285 0.0 568
MS.gene072532.t1 MTR_1g083580 62.238 286 95 4 3 283 4 281 5.10e-129 368
MS.gene072532.t1 MTR_7g112560 45.652 276 126 5 10 283 4 257 3.56e-79 241
MS.gene072532.t1 MTR_1g079260 47.535 284 131 9 5 283 2 272 4.85e-77 236
MS.gene072532.t1 MTR_1g100597 45.230 283 139 7 5 283 2 272 6.87e-73 225
MS.gene072532.t1 MTR_1g079410 46.503 286 128 9 5 283 6 273 1.22e-72 224
MS.gene072532.t1 MTR_1g079460 47.670 279 122 7 10 283 7 266 1.61e-70 219
MS.gene072532.t1 MTR_1g079180 46.071 280 134 6 5 283 2 265 1.99e-70 218
MS.gene072532.t1 MTR_1g079140 43.643 291 147 8 10 283 16 306 1.72e-69 218
MS.gene072532.t1 MTR_1g079370 43.262 282 139 7 5 283 2 265 1.40e-68 214
MS.gene072532.t1 MTR_1g079200 45.035 282 133 7 5 283 2 264 5.03e-67 209
MS.gene072532.t1 MTR_1g079380 44.876 283 135 7 5 284 2 266 1.24e-65 207
MS.gene072532.t1 MTR_4g023570 42.754 276 114 6 10 283 4 237 2.61e-64 202
MS.gene072532.t1 MTR_1g079850 43.214 280 148 7 10 283 7 281 2.19e-63 201
MS.gene072532.t1 MTR_1g079230 43.662 284 143 7 5 283 2 273 3.60e-61 195
MS.gene072532.t1 MTR_1g079250 42.958 284 140 10 10 283 7 278 2.49e-56 183
MS.gene072532.t1 MTR_1g079400 40.283 283 144 8 10 284 15 280 2.94e-56 182
MS.gene072532.t1 MTR_1g026510 39.792 289 149 11 10 284 7 284 3.42e-55 181
MS.gene072532.t1 MTR_1g100613 43.902 246 125 7 23 264 5 241 3.69e-54 176
MS.gene072532.t1 MTR_3g452600 42.086 278 136 9 10 284 13 268 8.96e-53 173
MS.gene072532.t1 MTR_1g079350 42.606 284 138 12 10 283 7 275 3.33e-52 172
MS.gene072532.t1 MTR_2g079100 40.714 280 135 9 6 280 8 261 4.63e-52 171
MS.gene072532.t1 MTR_3g006850 40.397 302 146 10 10 283 20 315 2.41e-50 169
MS.gene072532.t1 MTR_1g079340 38.488 291 151 10 10 283 46 325 1.14e-45 157
MS.gene072532.t1 MTR_3g450990 35.690 297 144 10 10 284 13 284 1.79e-39 139
MS.gene072532.t1 MTR_1g078470 43.956 182 84 5 102 283 21 184 3.76e-38 133
MS.gene072532.t1 MTR_7g096300 37.452 259 135 7 10 264 7 242 9.61e-37 139
MS.gene072532.t1 MTR_1g079130 42.857 189 97 6 106 283 1 189 8.11e-36 127
MS.gene072532.t1 MTR_1g079240 40.099 202 94 6 85 283 2 179 1.47e-29 110
MS.gene072532.t1 MTR_1g101390 25.965 285 175 8 5 282 26 281 6.24e-27 106
MS.gene072532.t1 MTR_7g103380 25.606 289 180 8 6 282 18 283 1.21e-25 103
MS.gene072532.t1 MTR_0113s0040 25.704 284 183 7 3 283 18 276 1.70e-25 102
MS.gene072532.t1 MTR_0002s0020 25.180 278 177 6 10 280 25 278 8.96e-24 98.2
MS.gene072532.t1 MTR_1g076870 43.382 136 71 4 133 264 2 135 7.90e-22 89.0
MS.gene072532.t1 MTR_5g010800 23.592 284 183 8 5 282 15 270 1.98e-21 91.7
MS.gene072532.t1 MTR_1g079350 48.598 107 50 4 10 113 7 111 3.49e-21 89.7
MS.gene072532.t1 MTR_4g083970 31.452 248 127 10 41 283 81 290 3.76e-21 91.3
MS.gene072532.t1 MTR_4g102770 23.913 276 183 5 10 282 22 273 5.70e-20 87.8
MS.gene072532.t1 MTR_7g096310 44.828 87 46 1 83 169 57 141 1.47e-16 75.9
MS.gene072532.t1 MTR_2g042540 35.000 140 75 5 10 148 7 131 1.38e-13 66.6
MS.gene072532.t1 MTR_1g079210 39.024 123 62 5 134 251 7 121 3.14e-12 63.2
MS.gene072532.t1 MTR_3g058640 35.593 118 57 4 133 249 7 106 4.55e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072532.t1 AT1G09155 47.857 280 138 4 10 283 3 280 3.90e-87 262
MS.gene072532.t1 AT1G56240 47.872 282 139 5 7 282 1 280 1.81e-82 250
MS.gene072532.t1 AT1G56250 48.057 283 139 5 7 283 1 281 1.93e-82 249
MS.gene072532.t1 AT2G02360 42.857 280 127 8 9 282 16 268 1.04e-68 214
MS.gene072532.t1 AT2G02240 44.484 281 132 6 4 282 58 316 3.01e-68 215
MS.gene072532.t1 AT2G02230 37.987 308 154 8 9 285 34 335 3.23e-64 205
MS.gene072532.t1 AT2G02250 39.858 281 142 7 9 285 49 306 3.14e-63 201
MS.gene072532.t1 AT2G02340 38.849 278 150 6 10 282 39 301 2.06e-61 197
MS.gene072532.t1 AT1G80110 42.652 279 129 8 9 282 3 255 1.93e-60 192
MS.gene072532.t1 AT2G02320 38.246 285 143 11 6 282 39 298 4.56e-53 175
MS.gene072532.t1 AT2G02350 37.063 286 149 9 4 282 21 282 1.29e-49 166
MS.gene072532.t1 AT2G02300 34.471 293 143 8 3 285 30 283 5.48e-47 159
MS.gene072532.t1 AT2G02310 34.409 279 156 6 10 283 48 304 1.29e-45 156
MS.gene072532.t1 AT5G24560 42.623 183 91 3 6 187 2 171 2.72e-41 141
MS.gene072532.t1 AT5G24560 55.102 49 21 1 237 284 145 193 5.87e-11 60.8
MS.gene072532.t1 AT3G53000 25.362 276 188 5 10 282 24 284 2.14e-26 105
MS.gene072532.t1 AT3G61060 23.132 281 187 7 7 283 25 280 9.49e-22 92.8
MS.gene072532.t1 AT5G52120 35.135 148 91 1 10 152 24 171 1.02e-21 92.8
MS.gene072532.t1 AT3G61060 23.050 282 187 8 7 283 25 281 3.69e-20 88.6
MS.gene072532.t1 AT1G63090 31.875 160 105 2 10 169 29 184 1.41e-19 86.7
MS.gene072532.t1 AT2G02350 32.787 183 99 7 106 282 1 165 4.10e-18 80.5
MS.gene072532.t1 AT1G12710 31.690 142 95 1 10 151 31 170 8.08e-18 82.0
MS.gene072532.t1 AT4G19840 32.796 186 87 9 104 284 94 246 3.56e-16 76.6
MS.gene072532.t1 AT4G19850 32.663 199 81 10 100 284 18 177 1.07e-15 73.9
MS.gene072532.t1 AT4G19850 32.663 199 81 10 100 284 60 219 1.81e-15 73.9
MS.gene072532.t1 AT1G12710 24.579 297 196 8 10 282 31 323 5.01e-13 68.6
MS.gene072532.t1 AT1G65390 29.412 187 93 7 104 284 258 411 7.56e-13 68.6
MS.gene072532.t1 AT4G19850 43.023 86 41 3 100 178 60 144 6.65e-12 64.3

Find 63 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGAATTTACCTTGATTC+AGG 0.207601 7.2:+4367168 None:intergenic
CACTCAACATTATGTATGTT+TGG 0.258964 7.2:+4366339 None:intergenic
ATGAATACAGAGTTTCAAAT+TGG 0.315101 7.2:-4367286 MS.gene072532:intron
TCAGAAGTTTCAATTGTGAT+AGG 0.336359 7.2:-4366640 MS.gene072532:CDS
TCTTCTTGACGGTGGCAATA+AGG 0.346182 7.2:-4367400 MS.gene072532:intron
AAAATGAGTCTCATGGAAAT+TGG 0.352489 7.2:-4366409 MS.gene072532:CDS
CTCAGTTGCAAATTCTGACT+TGG 0.367182 7.2:-4367541 MS.gene072532:CDS
TTGCAAATTCTGACTTGGTT+TGG 0.367693 7.2:-4367536 MS.gene072532:CDS
GTTCTCAGTTCTGCTACCTC+TGG 0.373037 7.2:+4366784 None:intergenic
TGTCGTCCCCTTCTTCTTGA+CGG 0.380322 7.2:-4367411 MS.gene072532:CDS
TACATCAATAGTTTCCTTGC+CGG 0.382514 7.2:-4367643 MS.gene072532:CDS
ACTCAACATTATGTATGTTT+GGG 0.392059 7.2:+4366340 None:intergenic
GGAGCATTGACCCAATGTTC+TGG 0.400215 7.2:-4367206 MS.gene072532:CDS
CACCCATCTTCTCTCTTAGA+TGG 0.405307 7.2:+4366484 None:intergenic
GGGTGGATGGAGATTGAGAT+TGG 0.425991 7.2:-4366466 MS.gene072532:CDS
GTGAACTGGTTAGAAATAGA+AGG 0.433687 7.2:-4366760 MS.gene072532:CDS
AAGGGAGGACTTGTTCTTGA+AGG 0.435815 7.2:-4366376 MS.gene072532:CDS
GGTGGATGGAGATTGAGATT+GGG 0.437845 7.2:-4366465 MS.gene072532:CDS
TATTGATGTAGTGGAATTCA+TGG 0.439823 7.2:+4367656 None:intergenic
CTCGTAATCAGAGGGTAAAA+AGG 0.446015 7.2:+4367509 None:intergenic
TATGCTGCATATAACGTGTT+TGG 0.457027 7.2:+4366712 None:intergenic
ATTTCCAACTCCAGAACATT+GGG 0.462304 7.2:+4367196 None:intergenic
ATAGAATTTACCTTGATTCA+GGG 0.467505 7.2:+4367169 None:intergenic
TTCTCAGTTCTGCTACCTCT+GGG 0.471421 7.2:+4366785 None:intergenic
GTGATTCAAGAACGAGAAGA+TGG 0.471594 7.2:-4366523 MS.gene072532:CDS
ATAGGAAACAAAGTGAATAG+AGG 0.475105 7.2:-4366622 MS.gene072532:CDS
ATTGCAGAAACACAATCTTC+CGG 0.478429 7.2:+4367624 None:intergenic
TTGACCCAATGTTCTGGAGT+TGG 0.488142 7.2:-4367200 MS.gene072532:CDS
GTACCATCTAAGAGAGAAGA+TGG 0.494512 7.2:-4366487 MS.gene072532:CDS
TGCAACTGAGACAAAGGTGT+TGG 0.499814 7.2:+4367554 None:intergenic
TTTCAGTGGTGAAGGTGATG+AGG 0.505724 7.2:-4366437 MS.gene072532:CDS
TATTGCCACCGTCAAGAAGA+AGG 0.507935 7.2:+4367403 None:intergenic
CAGAACTGAGAACAGTGAAC+TGG 0.517337 7.2:-4366774 MS.gene072532:CDS
GGAAATCATCCCCTGAATCA+AGG 0.518353 7.2:-4367179 MS.gene072532:intron
GACAATGTCCTCGTAATCAG+AGG 0.522264 7.2:+4367500 None:intergenic
GATTTCCAACTCCAGAACAT+TGG 0.527865 7.2:+4367195 None:intergenic
GGAGATTAAAATGAGTCTCA+TGG 0.532086 7.2:-4366416 MS.gene072532:CDS
CAAGGAAACTATTGATGTAG+TGG 0.548716 7.2:+4367647 None:intergenic
CGTCCCCTTCTTCTTGACGG+TGG 0.557206 7.2:-4367408 MS.gene072532:CDS
GGAAATTGGTCATCAGTTGA+AGG 0.562082 7.2:-4366395 MS.gene072532:CDS
AGATGAGAACAAACGTAACA+TGG 0.562427 7.2:-4366578 MS.gene072532:CDS
AGAATTTGCAACTGAGACAA+AGG 0.565980 7.2:+4367548 None:intergenic
TAAGAGAGAAGATGGGTGGA+TGG 0.569382 7.2:-4366479 MS.gene072532:CDS
ATTGCCACCGTCAAGAAGAA+GGG 0.569926 7.2:+4367404 None:intergenic
GTGGATGGAGATTGAGATTG+GGG 0.574135 7.2:-4366464 MS.gene072532:CDS
TAGGAAACAAAGTGAATAGA+GGG 0.576702 7.2:-4366621 MS.gene072532:CDS
AAAGCCTCTCATAGAGCGTA+CGG 0.576817 7.2:-4366679 MS.gene072532:CDS
TAGAATTTACCTTGATTCAG+GGG 0.577464 7.2:+4367170 None:intergenic
TTCTTGAAGGTATTGAAGTG+AGG 0.581504 7.2:-4366363 MS.gene072532:CDS
ATCACAATTGAAACTTCTGA+AGG 0.588980 7.2:+4366643 None:intergenic
GAAATTGGTCATCAGTTGAA+GGG 0.604852 7.2:-4366394 MS.gene072532:CDS
CAAGAGAGTTGTCAATAGCG+TGG 0.617687 7.2:-4367227 MS.gene072532:CDS
AAGTCCGTACGCTCTATGAG+AGG 0.627073 7.2:+4366675 None:intergenic
TTGCCACCGTCAAGAAGAAG+GGG 0.644519 7.2:+4367405 None:intergenic
CATCTAAGAGAGAAGATGGG+TGG 0.646865 7.2:-4366483 MS.gene072532:CDS
ACAATGTCCTCGTAATCAGA+GGG 0.655750 7.2:+4367501 None:intergenic
GAAAATCTACATGCATCTTG+TGG 0.656372 7.2:+4367585 None:intergenic
TACCATCTAAGAGAGAAGAT+GGG 0.658212 7.2:-4366486 MS.gene072532:CDS
AGAAACACAATCTTCCGGCA+AGG 0.667047 7.2:+4367629 None:intergenic
ATTCAAGAACGAGAAGATGG+AGG 0.667052 7.2:-4366520 MS.gene072532:CDS
ATTGGTCATCAGTTGAAGGG+AGG 0.682333 7.2:-4366391 MS.gene072532:CDS
TAGAAGGCAAGATTAGAACG+AGG 0.711025 7.2:-4366744 MS.gene072532:CDS
TAATATTTGCAGATTCCCAG+AGG 0.726581 7.2:-4366800 MS.gene072532:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAGTTGATTAAT+TGG + chr7.2:4366903-4366922 None:intergenic 10.0%
!! AATTAACAAAAACTAAATTA+AGG + chr7.2:4366673-4366692 None:intergenic 10.0%
!! AATAAATTAAAATGTATGTG+CGG + chr7.2:4367084-4367103 None:intergenic 15.0%
!!! CACATACATTTTAATTTATT+AGG - chr7.2:4367084-4367103 MS.gene072532:intron 15.0%
!!! TTAATTTTTGTTTACTATCA+GGG + chr7.2:4367175-4367194 None:intergenic 15.0%
!!! TTTAATTTTTGTTTACTATC+AGG + chr7.2:4367176-4367195 None:intergenic 15.0%
!!! ACATTTTAATTTATTAGGAG+AGG - chr7.2:4367089-4367108 MS.gene072532:intron 20.0%
!!! TTTCAAATTGGAGAAATTTT+CGG - chr7.2:4366728-4366747 MS.gene072532:CDS 20.0%
!!! TTTTTCGTTAGATATGTTTT+CGG - chr7.2:4366918-4366937 MS.gene072532:intron 20.0%
! AATAGAATTTACCTTGATTC+AGG + chr7.2:4366837-4366856 None:intergenic 25.0%
! ATAAAAAGCTGACATATTTC+CGG + chr7.2:4366946-4366965 None:intergenic 25.0%
! ATAGAATTTACCTTGATTCA+GGG + chr7.2:4366836-4366855 None:intergenic 25.0%
! ATGAATACAGAGTTTCAAAT+TGG - chr7.2:4366716-4366735 MS.gene072532:CDS 25.0%
! TACACTAACATAGTAATATC+TGG + chr7.2:4366635-4366654 None:intergenic 25.0%
!! TTCAAATTGGAGAAATTTTC+GGG - chr7.2:4366729-4366748 MS.gene072532:CDS 25.0%
!!! TTTTAATTTATTAGGAGAGG+CGG - chr7.2:4367092-4367111 MS.gene072532:intron 25.0%
AAAATGAGTCTCATGGAAAT+TGG - chr7.2:4367593-4367612 MS.gene072532:CDS 30.0%
ATAGGAAACAAAGTGAATAG+AGG - chr7.2:4367380-4367399 MS.gene072532:intron 30.0%
ATCACAATTGAAACTTCTGA+AGG + chr7.2:4367362-4367381 None:intergenic 30.0%
TAAAAAGCTGACATATTTCC+GGG + chr7.2:4366945-4366964 None:intergenic 30.0%
TAGAATTTACCTTGATTCAG+GGG + chr7.2:4366835-4366854 None:intergenic 30.0%
TAGGAAACAAAGTGAATAGA+GGG - chr7.2:4367381-4367400 MS.gene072532:intron 30.0%
TCAGAAGTTTCAATTGTGAT+AGG - chr7.2:4367362-4367381 MS.gene072532:intron 30.0%
TGTATGTGCGGTATTTAAAA+TGG + chr7.2:4367072-4367091 None:intergenic 30.0%
! AACATGGAGACACTATTTTA+CGG - chr7.2:4367440-4367459 MS.gene072532:CDS 30.0%
! AAGTGAAGATGCAAAACTTT+TGG + chr7.2:4367007-4367026 None:intergenic 30.0%
! AAGTTTTGCATCTTCACTTT+TGG - chr7.2:4367008-4367027 MS.gene072532:intron 30.0%
! AGATGCATGTAGATTTTCAT+TGG - chr7.2:4366422-4366441 MS.gene072532:CDS 30.0%
! CATTTGATGATAATGCAAGA+TGG + chr7.2:4367035-4367054 None:intergenic 30.0%
!! AACTTTTGGAGACTAAAAGT+TGG + chr7.2:4366993-4367012 None:intergenic 30.0%
AGAATTTGCAACTGAGACAA+AGG + chr7.2:4366457-4366476 None:intergenic 35.0%
AGATGAGAACAAACGTAACA+TGG - chr7.2:4367424-4367443 MS.gene072532:CDS 35.0%
ATTGCAGAAACACAATCTTC+CGG + chr7.2:4366381-4366400 None:intergenic 35.0%
ATTTCCAACTCCAGAACATT+GGG + chr7.2:4366809-4366828 None:intergenic 35.0%
CAAGGAAACTATTGATGTAG+TGG + chr7.2:4366358-4366377 None:intergenic 35.0%
GAAAATCTACATGCATCTTG+TGG + chr7.2:4366420-4366439 None:intergenic 35.0%
GAAATTGGTCATCAGTTGAA+GGG - chr7.2:4367608-4367627 MS.gene072532:CDS 35.0%
GGAGATTAAAATGAGTCTCA+TGG - chr7.2:4367586-4367605 MS.gene072532:CDS 35.0%
GTGAACTGGTTAGAAATAGA+AGG - chr7.2:4367242-4367261 MS.gene072532:CDS 35.0%
TAATATTTGCAGATTCCCAG+AGG - chr7.2:4367202-4367221 MS.gene072532:CDS 35.0%
TACATCAATAGTTTCCTTGC+CGG - chr7.2:4366359-4366378 MS.gene072532:CDS 35.0%
TACCATCTAAGAGAGAAGAT+GGG - chr7.2:4367516-4367535 MS.gene072532:CDS 35.0%
TATGCTGCATATAACGTGTT+TGG + chr7.2:4367293-4367312 None:intergenic 35.0%
! ACATGGAGACACTATTTTAC+GGG - chr7.2:4367441-4367460 MS.gene072532:CDS 35.0%
!! TTCTTGAAGGTATTGAAGTG+AGG - chr7.2:4367639-4367658 MS.gene072532:CDS 35.0%
!! TTGCAAATTCTGACTTGGTT+TGG - chr7.2:4366466-4366485 MS.gene072532:CDS 35.0%
ACAATGTCCTCGTAATCAGA+GGG + chr7.2:4366504-4366523 None:intergenic 40.0%
ATTCAAGAACGAGAAGATGG+AGG - chr7.2:4367482-4367501 MS.gene072532:CDS 40.0%
CTCAGTTGCAAATTCTGACT+TGG - chr7.2:4366461-4366480 MS.gene072532:CDS 40.0%
CTCGTAATCAGAGGGTAAAA+AGG + chr7.2:4366496-4366515 None:intergenic 40.0%
GATTTCCAACTCCAGAACAT+TGG + chr7.2:4366810-4366829 None:intergenic 40.0%
GGAAATTGGTCATCAGTTGA+AGG - chr7.2:4367607-4367626 MS.gene072532:CDS 40.0%
GTACCATCTAAGAGAGAAGA+TGG - chr7.2:4367515-4367534 MS.gene072532:CDS 40.0%
GTGATTCAAGAACGAGAAGA+TGG - chr7.2:4367479-4367498 MS.gene072532:CDS 40.0%
TAGAAGGCAAGATTAGAACG+AGG - chr7.2:4367258-4367277 MS.gene072532:CDS 40.0%
! CTTTTTACCCTCTGATTACG+AGG - chr7.2:4366494-4366513 MS.gene072532:CDS 40.0%
! GTTAGATATGTTTTCGGTCC+CGG - chr7.2:4366924-4366943 MS.gene072532:intron 40.0%
AAAGCCTCTCATAGAGCGTA+CGG - chr7.2:4367323-4367342 MS.gene072532:intron 45.0%
AGAAACACAATCTTCCGGCA+AGG + chr7.2:4366376-4366395 None:intergenic 45.0%
ATTGCCACCGTCAAGAAGAA+GGG + chr7.2:4366601-4366620 None:intergenic 45.0%
ATTGGTCATCAGTTGAAGGG+AGG - chr7.2:4367611-4367630 MS.gene072532:CDS 45.0%
CAAGAGAGTTGTCAATAGCG+TGG - chr7.2:4366775-4366794 MS.gene072532:CDS 45.0%
CACCCATCTTCTCTCTTAGA+TGG + chr7.2:4367521-4367540 None:intergenic 45.0%
CAGAACTGAGAACAGTGAAC+TGG - chr7.2:4367228-4367247 MS.gene072532:CDS 45.0%
CATCTAAGAGAGAAGATGGG+TGG - chr7.2:4367519-4367538 MS.gene072532:CDS 45.0%
GACAATGTCCTCGTAATCAG+AGG + chr7.2:4366505-4366524 None:intergenic 45.0%
GGAAATCATCCCCTGAATCA+AGG - chr7.2:4366823-4366842 MS.gene072532:intron 45.0%
GGTGGATGGAGATTGAGATT+GGG - chr7.2:4367537-4367556 MS.gene072532:CDS 45.0%
GTGGATGGAGATTGAGATTG+GGG - chr7.2:4367538-4367557 MS.gene072532:CDS 45.0%
TAAGAGAGAAGATGGGTGGA+TGG - chr7.2:4367523-4367542 MS.gene072532:CDS 45.0%
TATTGCCACCGTCAAGAAGA+AGG + chr7.2:4366602-4366621 None:intergenic 45.0%
TCTTCTTGACGGTGGCAATA+AGG - chr7.2:4366602-4366621 MS.gene072532:CDS 45.0%
TTCTCAGTTCTGCTACCTCT+GGG + chr7.2:4367220-4367239 None:intergenic 45.0%
TTTCAGTGGTGAAGGTGATG+AGG - chr7.2:4367565-4367584 MS.gene072532:CDS 45.0%
! AAGGGAGGACTTGTTCTTGA+AGG - chr7.2:4367626-4367645 MS.gene072532:CDS 45.0%
! TGCAACTGAGACAAAGGTGT+TGG + chr7.2:4366451-4366470 None:intergenic 45.0%
!! GAGATTGGGGAGTTTTTCAG+TGG - chr7.2:4367551-4367570 MS.gene072532:CDS 45.0%
!! TTGACCCAATGTTCTGGAGT+TGG - chr7.2:4366802-4366821 MS.gene072532:intron 45.0%
AAGTCCGTACGCTCTATGAG+AGG + chr7.2:4367330-4367349 None:intergenic 50.0%
GGGTGGATGGAGATTGAGAT+TGG - chr7.2:4367536-4367555 MS.gene072532:CDS 50.0%
GTTCTCAGTTCTGCTACCTC+TGG + chr7.2:4367221-4367240 None:intergenic 50.0%
TGTCGTCCCCTTCTTCTTGA+CGG - chr7.2:4366591-4366610 MS.gene072532:CDS 50.0%
TTGCCACCGTCAAGAAGAAG+GGG + chr7.2:4366600-4366619 None:intergenic 50.0%
!! GGAGCATTGACCCAATGTTC+TGG - chr7.2:4366796-4366815 MS.gene072532:intron 50.0%
!! GGGGAGTTTTTCAGTGGTGA+AGG - chr7.2:4367557-4367576 MS.gene072532:CDS 50.0%
CGTCCCCTTCTTCTTGACGG+TGG - chr7.2:4366594-4366613 MS.gene072532:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4366348 4367676 4366348 ID=MS.gene072532
chr7.2 mRNA 4366348 4367676 4366348 ID=MS.gene072532.t1;Parent=MS.gene072532
chr7.2 exon 4367401 4367676 4367401 ID=MS.gene072532.t1.exon1;Parent=MS.gene072532.t1
chr7.2 CDS 4367401 4367676 4367401 ID=cds.MS.gene072532.t1;Parent=MS.gene072532.t1
chr7.2 exon 4367180 4367298 4367180 ID=MS.gene072532.t1.exon2;Parent=MS.gene072532.t1
chr7.2 CDS 4367180 4367298 4367180 ID=cds.MS.gene072532.t1;Parent=MS.gene072532.t1
chr7.2 exon 4366348 4366810 4366348 ID=MS.gene072532.t1.exon3;Parent=MS.gene072532.t1
chr7.2 CDS 4366348 4366810 4366348 ID=cds.MS.gene072532.t1;Parent=MS.gene072532.t1
Gene Sequence

>MS.gene072532

ATGAATTCCACTACATCAATAGTTTCCTTGCCGGAAGATTGTGTTTCTGCAATATTGTCACATACATCACCACAAGATGCATGTAGATTTTCATTGGTTTCCAACACCTTTGTCTCAGTTGCAAATTCTGACTTGGTTTGGAAGACCTTTTTACCCTCTGATTACGAGGACATTGTCTCAAGAGCTGTGAATCAATTCTCTTTCAAATTCATCTCTTCATACAAGCAACTCTTTCGTTCATTTTGTCGTCCCCTTCTTCTTGACGGTGGCAATAAGGTAATTTACCAGATATTACTATGTTAGTGTATTTGCTTCTAACTAACCTTAATTTAGTTTTTGTTAATTTTACTATGTTCTATCATGTGATGATGAATACAGAGTTTCAAATTGGAGAAATTTTCGGGCAAAAAATGTTATATGTTATCAGCAAGAGAGTTGTCAATAGCGTGGAGCATTGACCCAATGTTCTGGAGTTGGAAATCATCCCCTGAATCAAGGTAAATTCTATTATTAGCTTCGCATCTTAAGTCAACTCAACTTTATCTTACAACGCCAATTAATCAACTATTTTTTTTCGTTAGATATGTTTTCGGTCCCGGAAATATGTCAGCTTTTTATTTTAGTCATCTTAAAAAATTTCTTCCAACTTTTAGTCTCCAAAAGTTTTGCATCTTCACTTTTGGTCCATCTTGCATTATCATCAAATGTATAGAAATCAAATCCATTTTAAATACCGCACATACATTTTAATTTATTAGGAGAGGCGGTAATTTAGAGATACAAAATTATTGTGTAAAATGAGTATGTTGATGATTTGTTGTACTCCCTGATAGTAAACAAAAATTAAATTAAATTAATATTTGCAGATTCCCAGAGGTAGCAGAACTGAGAACAGTGAACTGGTTAGAAATAGAAGGCAAGATTAGAACGAGGATGCTAACGCCAAACACGTTATATGCAGCATATCTTGTAATGAAAGCCTCTCATAGAGCGTACGGACTTGACTCTACTCCTTCAGAAGTTTCAATTGTGATAGGAAACAAAGTGAATAGAGGGAAAGCATATTTGTGCAATAAAGATGAGAACAAACGTAACATGGAGACACTATTTTACGGGAACAGAAGAAACAGAGTGATTCAAGAACGAGAAGATGGAGGATATATTCAAGTACCATCTAAGAGAGAAGATGGGTGGATGGAGATTGAGATTGGGGAGTTTTTCAGTGGTGAAGGTGATGAGGAGATTAAAATGAGTCTCATGGAAATTGGTCATCAGTTGAAGGGAGGACTTGTTCTTGAAGGTATTGAAGTGAGGCCCAAACATACATAA
Protein sequence

>MS.gene072532.t1

MNSTTSIVSLPEDCVSAILSHTSPQDACRFSLVSNTFVSVANSDLVWKTFLPSDYEDIVSRAVNQFSFKFISSYKQLFRSFCRPLLLDGGNKSFKLEKFSGKKCYMLSARELSIAWSIDPMFWSWKSSPESRFPEVAELRTVNWLEIEGKIRTRMLTPNTLYAAYLVMKASHRAYGLDSTPSEVSIVIGNKVNRGKAYLCNKDENKRNMETLFYGNRRNRVIQEREDGGYIQVPSKREDGWMEIEIGEFFSGEGDEEIKMSLMEIGHQLKGGLVLEGIEVRPKHT