Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054425.t1 | XP_003626193.1 | 95.8 | 285 | 12 | 0 | 1 | 285 | 1 | 285 | 4.30E-154 | 553.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054425.t1 | O80494 | 47.9 | 280 | 138 | 4 | 10 | 283 | 3 | 280 | 1.3e-66 | 254.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054425.t1 | G7KWJ9 | 95.8 | 285 | 12 | 0 | 1 | 285 | 1 | 285 | 3.1e-154 | 553.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050935 | MS.gene054425 | 0.810496 | 1.12E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054425 | MS.gene033388 | PPI |
| MS.gene054425 | MS.gene011426 | PPI |
| MS.gene22796 | MS.gene054425 | PPI |
| MS.gene40823 | MS.gene054425 | PPI |
| MS.gene054425 | MS.gene072532 | PPI |
| MS.gene054425 | MS.gene015544 | PPI |
| MS.gene054425 | MS.gene20125 | PPI |
| MS.gene054425 | MS.gene015546 | PPI |
| MS.gene054425 | MS.gene072814 | PPI |
| MS.gene054425 | MS.gene050935 | PPI |
| MS.gene054425 | MS.gene22617 | PPI |
| MS.gene054425 | MS.gene40823 | PPI |
| MS.gene054425 | MS.gene22796 | PPI |
| MS.gene054425 | MS.gene72988 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054425.t1 | MTR_7g112550 | 95.789 | 285 | 12 | 0 | 1 | 285 | 1 | 285 | 0.0 | 571 |
| MS.gene054425.t1 | MTR_1g083580 | 62.238 | 286 | 95 | 4 | 3 | 283 | 4 | 281 | 1.82e-129 | 369 |
| MS.gene054425.t1 | MTR_7g112560 | 45.652 | 276 | 126 | 5 | 10 | 283 | 4 | 257 | 5.93e-79 | 240 |
| MS.gene054425.t1 | MTR_1g079260 | 47.552 | 286 | 128 | 9 | 5 | 283 | 2 | 272 | 3.28e-77 | 236 |
| MS.gene054425.t1 | MTR_1g100597 | 45.230 | 283 | 139 | 7 | 5 | 283 | 2 | 272 | 4.91e-73 | 225 |
| MS.gene054425.t1 | MTR_1g079410 | 45.775 | 284 | 133 | 8 | 5 | 283 | 6 | 273 | 1.07e-72 | 224 |
| MS.gene054425.t1 | MTR_1g079460 | 47.670 | 279 | 122 | 7 | 10 | 283 | 7 | 266 | 1.01e-70 | 219 |
| MS.gene054425.t1 | MTR_1g079180 | 46.071 | 280 | 134 | 6 | 5 | 283 | 2 | 265 | 1.45e-70 | 219 |
| MS.gene054425.t1 | MTR_1g079140 | 43.643 | 291 | 147 | 9 | 10 | 283 | 16 | 306 | 3.83e-70 | 219 |
| MS.gene054425.t1 | MTR_1g079370 | 43.262 | 282 | 139 | 7 | 5 | 283 | 2 | 265 | 8.51e-69 | 214 |
| MS.gene054425.t1 | MTR_1g079200 | 45.035 | 282 | 133 | 7 | 5 | 283 | 2 | 264 | 3.92e-67 | 210 |
| MS.gene054425.t1 | MTR_1g079380 | 44.876 | 283 | 135 | 7 | 5 | 284 | 2 | 266 | 1.18e-65 | 207 |
| MS.gene054425.t1 | MTR_4g023570 | 42.754 | 276 | 114 | 6 | 10 | 283 | 4 | 237 | 6.93e-64 | 201 |
| MS.gene054425.t1 | MTR_1g079850 | 43.214 | 280 | 148 | 7 | 10 | 283 | 7 | 281 | 1.51e-63 | 201 |
| MS.gene054425.t1 | MTR_1g079230 | 43.662 | 284 | 143 | 7 | 5 | 283 | 2 | 273 | 2.26e-61 | 196 |
| MS.gene054425.t1 | MTR_1g079250 | 42.958 | 284 | 140 | 10 | 10 | 283 | 7 | 278 | 2.59e-56 | 183 |
| MS.gene054425.t1 | MTR_1g079400 | 40.283 | 283 | 144 | 8 | 10 | 284 | 15 | 280 | 3.77e-56 | 182 |
| MS.gene054425.t1 | MTR_1g026510 | 39.583 | 288 | 151 | 9 | 10 | 284 | 7 | 284 | 4.77e-55 | 180 |
| MS.gene054425.t1 | MTR_1g100613 | 43.902 | 246 | 125 | 7 | 23 | 264 | 5 | 241 | 1.93e-54 | 177 |
| MS.gene054425.t1 | MTR_3g452600 | 41.367 | 278 | 138 | 8 | 10 | 284 | 13 | 268 | 5.83e-53 | 174 |
| MS.gene054425.t1 | MTR_2g079100 | 38.929 | 280 | 140 | 7 | 6 | 280 | 8 | 261 | 3.62e-52 | 172 |
| MS.gene054425.t1 | MTR_1g079350 | 42.606 | 284 | 138 | 12 | 10 | 283 | 7 | 275 | 5.07e-52 | 171 |
| MS.gene054425.t1 | MTR_3g006850 | 40.397 | 302 | 146 | 10 | 10 | 283 | 20 | 315 | 1.10e-50 | 169 |
| MS.gene054425.t1 | MTR_1g079340 | 38.488 | 291 | 151 | 10 | 10 | 283 | 46 | 325 | 7.84e-46 | 157 |
| MS.gene054425.t1 | MTR_3g450990 | 35.235 | 298 | 144 | 9 | 10 | 284 | 13 | 284 | 8.59e-40 | 140 |
| MS.gene054425.t1 | MTR_1g078470 | 43.956 | 182 | 84 | 5 | 102 | 283 | 21 | 184 | 2.27e-38 | 133 |
| MS.gene054425.t1 | MTR_7g096300 | 37.066 | 259 | 136 | 7 | 10 | 264 | 7 | 242 | 6.28e-37 | 139 |
| MS.gene054425.t1 | MTR_1g079130 | 42.857 | 189 | 97 | 6 | 106 | 283 | 1 | 189 | 1.27e-36 | 129 |
| MS.gene054425.t1 | MTR_1g079240 | 40.099 | 202 | 94 | 6 | 85 | 283 | 2 | 179 | 1.49e-29 | 110 |
| MS.gene054425.t1 | MTR_1g101390 | 25.614 | 285 | 176 | 8 | 5 | 282 | 26 | 281 | 9.41e-26 | 103 |
| MS.gene054425.t1 | MTR_0113s0040 | 25.087 | 287 | 181 | 7 | 3 | 283 | 18 | 276 | 2.09e-25 | 102 |
| MS.gene054425.t1 | MTR_7g103380 | 24.913 | 289 | 182 | 7 | 6 | 282 | 18 | 283 | 6.81e-25 | 101 |
| MS.gene054425.t1 | MTR_0002s0020 | 25.180 | 278 | 177 | 6 | 10 | 280 | 25 | 278 | 1.29e-23 | 97.8 |
| MS.gene054425.t1 | MTR_1g076870 | 43.382 | 136 | 71 | 4 | 133 | 264 | 2 | 135 | 3.18e-22 | 90.1 |
| MS.gene054425.t1 | MTR_1g079350 | 48.598 | 107 | 50 | 4 | 10 | 113 | 7 | 111 | 3.53e-21 | 89.7 |
| MS.gene054425.t1 | MTR_4g083970 | 31.452 | 248 | 127 | 10 | 41 | 283 | 81 | 290 | 3.68e-21 | 91.3 |
| MS.gene054425.t1 | MTR_5g010800 | 23.239 | 284 | 184 | 8 | 5 | 282 | 15 | 270 | 2.98e-20 | 88.6 |
| MS.gene054425.t1 | MTR_4g102770 | 23.913 | 276 | 183 | 5 | 10 | 282 | 22 | 273 | 6.50e-20 | 87.4 |
| MS.gene054425.t1 | MTR_7g096310 | 44.828 | 87 | 46 | 1 | 83 | 169 | 57 | 141 | 1.41e-16 | 75.9 |
| MS.gene054425.t1 | MTR_2g042540 | 35.000 | 140 | 75 | 5 | 10 | 148 | 7 | 131 | 1.34e-13 | 67.0 |
| MS.gene054425.t1 | MTR_1g079210 | 39.024 | 123 | 62 | 5 | 134 | 251 | 7 | 121 | 3.20e-12 | 63.2 |
| MS.gene054425.t1 | MTR_3g058640 | 35.593 | 118 | 57 | 4 | 133 | 249 | 7 | 106 | 4.37e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054425.t1 | AT1G09155 | 47.857 | 280 | 138 | 4 | 10 | 283 | 3 | 280 | 4.17e-87 | 262 |
| MS.gene054425.t1 | AT1G56240 | 47.872 | 282 | 139 | 5 | 7 | 282 | 1 | 280 | 9.94e-83 | 250 |
| MS.gene054425.t1 | AT1G56250 | 48.057 | 283 | 139 | 5 | 7 | 283 | 1 | 281 | 1.06e-82 | 250 |
| MS.gene054425.t1 | AT2G02360 | 42.500 | 280 | 128 | 8 | 9 | 282 | 16 | 268 | 8.71e-69 | 214 |
| MS.gene054425.t1 | AT2G02240 | 44.484 | 281 | 132 | 6 | 4 | 282 | 58 | 316 | 1.83e-68 | 215 |
| MS.gene054425.t1 | AT2G02230 | 38.312 | 308 | 153 | 8 | 9 | 285 | 34 | 335 | 1.81e-65 | 208 |
| MS.gene054425.t1 | AT2G02250 | 39.502 | 281 | 143 | 6 | 9 | 285 | 49 | 306 | 9.06e-64 | 203 |
| MS.gene054425.t1 | AT2G02340 | 39.209 | 278 | 149 | 6 | 10 | 282 | 39 | 301 | 1.13e-62 | 200 |
| MS.gene054425.t1 | AT1G80110 | 42.652 | 279 | 129 | 8 | 9 | 282 | 3 | 255 | 6.19e-61 | 194 |
| MS.gene054425.t1 | AT2G02320 | 37.544 | 285 | 145 | 10 | 6 | 282 | 39 | 298 | 1.68e-53 | 176 |
| MS.gene054425.t1 | AT2G02350 | 37.063 | 286 | 149 | 9 | 4 | 282 | 21 | 282 | 1.26e-49 | 166 |
| MS.gene054425.t1 | AT2G02300 | 34.589 | 292 | 144 | 8 | 3 | 285 | 30 | 283 | 6.04e-47 | 159 |
| MS.gene054425.t1 | AT2G02310 | 34.409 | 279 | 156 | 6 | 10 | 283 | 48 | 304 | 1.21e-45 | 156 |
| MS.gene054425.t1 | AT5G24560 | 42.623 | 183 | 91 | 3 | 6 | 187 | 2 | 171 | 2.84e-41 | 141 |
| MS.gene054425.t1 | AT5G24560 | 55.102 | 49 | 21 | 1 | 237 | 284 | 145 | 193 | 5.75e-11 | 60.8 |
| MS.gene054425.t1 | AT3G53000 | 25.362 | 276 | 188 | 5 | 10 | 282 | 24 | 284 | 2.01e-26 | 105 |
| MS.gene054425.t1 | AT3G61060 | 23.132 | 281 | 187 | 7 | 7 | 283 | 25 | 280 | 9.02e-22 | 92.8 |
| MS.gene054425.t1 | AT5G52120 | 35.135 | 148 | 91 | 1 | 10 | 152 | 24 | 171 | 1.09e-21 | 92.4 |
| MS.gene054425.t1 | AT3G61060 | 23.050 | 282 | 187 | 8 | 7 | 283 | 25 | 281 | 3.48e-20 | 88.6 |
| MS.gene054425.t1 | AT1G63090 | 31.875 | 160 | 105 | 2 | 10 | 169 | 29 | 184 | 1.34e-19 | 86.7 |
| MS.gene054425.t1 | AT2G02350 | 32.787 | 183 | 99 | 7 | 106 | 282 | 1 | 165 | 3.98e-18 | 80.5 |
| MS.gene054425.t1 | AT1G12710 | 24.910 | 277 | 178 | 7 | 10 | 282 | 31 | 281 | 4.45e-18 | 82.8 |
| MS.gene054425.t1 | AT4G19840 | 32.796 | 186 | 87 | 10 | 104 | 284 | 94 | 246 | 1.05e-15 | 75.1 |
| MS.gene054425.t1 | AT4G19850 | 32.663 | 199 | 81 | 10 | 100 | 284 | 18 | 177 | 1.20e-15 | 73.6 |
| MS.gene054425.t1 | AT4G19850 | 32.663 | 199 | 81 | 10 | 100 | 284 | 60 | 219 | 1.62e-15 | 74.3 |
| MS.gene054425.t1 | AT1G65390 | 26.738 | 187 | 98 | 5 | 104 | 284 | 258 | 411 | 3.83e-13 | 69.3 |
| MS.gene054425.t1 | AT1G12710 | 23.729 | 295 | 201 | 6 | 10 | 282 | 31 | 323 | 5.01e-13 | 68.6 |
| MS.gene054425.t1 | AT4G19850 | 43.023 | 86 | 41 | 3 | 100 | 178 | 60 | 144 | 5.97e-12 | 64.3 |
Find 63 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGAATTTACCTTGATTC+AGG | 0.207601 | 7.4:+4172325 | None:intergenic |
| CACTCAACATTATGTATGTT+TGG | 0.258964 | 7.4:+4171496 | None:intergenic |
| ATGAATACAGAGTTTCAAAT+TGG | 0.315101 | 7.4:-4172443 | MS.gene054425:intron |
| TCAGAAGTTTCAATTGTGAT+AGG | 0.336359 | 7.4:-4171797 | MS.gene054425:CDS |
| TCTTCTTGACGGTGGCAATA+AGG | 0.346182 | 7.4:-4172557 | MS.gene054425:intron |
| AAAATGAGTCTCATGGAAAT+TGG | 0.352489 | 7.4:-4171566 | MS.gene054425:CDS |
| CTCAGTTGCAAATTCTGACT+TGG | 0.367182 | 7.4:-4172698 | MS.gene054425:CDS |
| TTGCAAATTCTGACTTGGTT+TGG | 0.367693 | 7.4:-4172693 | MS.gene054425:CDS |
| GTTCTCAGTTCTGCTACCTC+TGG | 0.373037 | 7.4:+4171941 | None:intergenic |
| TGTCGTCCCCTTCTTCTTGA+CGG | 0.380322 | 7.4:-4172568 | MS.gene054425:CDS |
| TACATCAATAGTTTCCTTGC+CGG | 0.382514 | 7.4:-4172800 | MS.gene054425:CDS |
| ACTCAACATTATGTATGTTT+GGG | 0.392059 | 7.4:+4171497 | None:intergenic |
| GGAGCATTGACCCAATGTTC+TGG | 0.400215 | 7.4:-4172363 | MS.gene054425:CDS |
| CACCCATCTTCTCTCTTAGA+TGG | 0.405307 | 7.4:+4171641 | None:intergenic |
| GGGTGGATGGAGATTGAGAT+TGG | 0.425991 | 7.4:-4171623 | MS.gene054425:CDS |
| GTGAACTGGTTAGAAATAGA+AGG | 0.433687 | 7.4:-4171917 | MS.gene054425:CDS |
| AAGGGAGGACTTGTTCTTGA+AGG | 0.435815 | 7.4:-4171533 | MS.gene054425:CDS |
| GGTGGATGGAGATTGAGATT+GGG | 0.437845 | 7.4:-4171622 | MS.gene054425:CDS |
| TATTGATGTAGTGGAATTCA+TGG | 0.439823 | 7.4:+4172813 | None:intergenic |
| CTCGTAATCAGAGGGTAAAA+AGG | 0.446015 | 7.4:+4172666 | None:intergenic |
| TATGCTGCATATAACGTGTT+TGG | 0.457027 | 7.4:+4171869 | None:intergenic |
| ATTTCCAACTCCAGAACATT+GGG | 0.462304 | 7.4:+4172353 | None:intergenic |
| ATAGAATTTACCTTGATTCA+GGG | 0.467505 | 7.4:+4172326 | None:intergenic |
| TTCTCAGTTCTGCTACCTCT+GGG | 0.471421 | 7.4:+4171942 | None:intergenic |
| GTGATTCAAGAACGAGAAGA+TGG | 0.471594 | 7.4:-4171680 | MS.gene054425:CDS |
| ATAGGAAACAAAGTGAATAG+AGG | 0.475105 | 7.4:-4171779 | MS.gene054425:CDS |
| ATTGCAGAAACACAATCTTC+CGG | 0.478429 | 7.4:+4172781 | None:intergenic |
| TTGACCCAATGTTCTGGAGT+TGG | 0.488142 | 7.4:-4172357 | MS.gene054425:CDS |
| GTACCATCTAAGAGAGAAGA+TGG | 0.494512 | 7.4:-4171644 | MS.gene054425:CDS |
| TGCAACTGAGACAAAGGTGT+TGG | 0.499814 | 7.4:+4172711 | None:intergenic |
| TTTCAGTGGTGAAGGTGATG+AGG | 0.505724 | 7.4:-4171594 | MS.gene054425:CDS |
| TATTGCCACCGTCAAGAAGA+AGG | 0.507935 | 7.4:+4172560 | None:intergenic |
| CAGAACTGAGAACAGTGAAC+TGG | 0.517337 | 7.4:-4171931 | MS.gene054425:CDS |
| GGAAATCATCCCCTGAATCA+AGG | 0.518353 | 7.4:-4172336 | MS.gene054425:intron |
| GACAATGTCCTCGTAATCAG+AGG | 0.522264 | 7.4:+4172657 | None:intergenic |
| GATTTCCAACTCCAGAACAT+TGG | 0.527865 | 7.4:+4172352 | None:intergenic |
| GGAGATTAAAATGAGTCTCA+TGG | 0.532086 | 7.4:-4171573 | MS.gene054425:CDS |
| CAAGGAAACTATTGATGTAG+TGG | 0.548716 | 7.4:+4172804 | None:intergenic |
| CGTCCCCTTCTTCTTGACGG+TGG | 0.557206 | 7.4:-4172565 | MS.gene054425:CDS |
| GGAAATTGGTCATCAGTTGA+AGG | 0.562082 | 7.4:-4171552 | MS.gene054425:CDS |
| AGATGAGAACAAACGTAACA+TGG | 0.562427 | 7.4:-4171735 | MS.gene054425:CDS |
| AGAATTTGCAACTGAGACAA+AGG | 0.565980 | 7.4:+4172705 | None:intergenic |
| TAAGAGAGAAGATGGGTGGA+TGG | 0.569382 | 7.4:-4171636 | MS.gene054425:CDS |
| ATTGCCACCGTCAAGAAGAA+GGG | 0.569926 | 7.4:+4172561 | None:intergenic |
| GTGGATGGAGATTGAGATTG+GGG | 0.574135 | 7.4:-4171621 | MS.gene054425:CDS |
| TAGGAAACAAAGTGAATAGA+GGG | 0.576702 | 7.4:-4171778 | MS.gene054425:CDS |
| AAAGCCTCTCATAGAGCGTA+CGG | 0.576817 | 7.4:-4171836 | MS.gene054425:CDS |
| TAGAATTTACCTTGATTCAG+GGG | 0.577464 | 7.4:+4172327 | None:intergenic |
| TTCTTGAAGGTATTGAAGTG+AGG | 0.581504 | 7.4:-4171520 | MS.gene054425:CDS |
| ATCACAATTGAAACTTCTGA+AGG | 0.588980 | 7.4:+4171800 | None:intergenic |
| GAAATTGGTCATCAGTTGAA+GGG | 0.604852 | 7.4:-4171551 | MS.gene054425:CDS |
| CAAGAGAGTTGTCAATAGCG+TGG | 0.617687 | 7.4:-4172384 | MS.gene054425:CDS |
| AAGTCCGTACGCTCTATGAG+AGG | 0.627073 | 7.4:+4171832 | None:intergenic |
| TTGCCACCGTCAAGAAGAAG+GGG | 0.644519 | 7.4:+4172562 | None:intergenic |
| ATTCAAGAACGAGAAGATGG+AGG | 0.646435 | 7.4:-4171677 | MS.gene054425:CDS |
| CATCTAAGAGAGAAGATGGG+TGG | 0.646865 | 7.4:-4171640 | MS.gene054425:CDS |
| ACAATGTCCTCGTAATCAGA+GGG | 0.655750 | 7.4:+4172658 | None:intergenic |
| GAAAATCTACATGCATCTTG+TGG | 0.656372 | 7.4:+4172742 | None:intergenic |
| TACCATCTAAGAGAGAAGAT+GGG | 0.658212 | 7.4:-4171643 | MS.gene054425:CDS |
| AGAAACACAATCTTCCGGCA+AGG | 0.667047 | 7.4:+4172786 | None:intergenic |
| ATTGGTCATCAGTTGAAGGG+AGG | 0.682333 | 7.4:-4171548 | MS.gene054425:CDS |
| TAGAAGGCAAAATTAGAACG+AGG | 0.714287 | 7.4:-4171901 | MS.gene054425:CDS |
| TAATATTTGCAGATTCCCAG+AGG | 0.726581 | 7.4:-4171957 | MS.gene054425:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAAATGTATGTG+CGG | + | chr7.4:4172241-4172260 | None:intergenic | 15.0% |
| !!! | CACATACATTTTAATTTATT+AGG | - | chr7.4:4172241-4172260 | MS.gene054425:intron | 15.0% |
| !!! | TTAATTTTTGTTTACTATCA+GGG | + | chr7.4:4172332-4172351 | None:intergenic | 15.0% |
| !!! | TTTAATTTTTGTTTACTATC+AGG | + | chr7.4:4172333-4172352 | None:intergenic | 15.0% |
| !! | AAAACTAAATTAACGTTAGT+TGG | + | chr7.4:4171822-4171841 | None:intergenic | 20.0% |
| !!! | ACATTTTAATTTATTAGGAG+AGG | - | chr7.4:4172246-4172265 | MS.gene054425:intron | 20.0% |
| !!! | TTTCAAATTGGAGAAATTTT+CGG | - | chr7.4:4171885-4171904 | MS.gene054425:CDS | 20.0% |
| !!! | TTTTTCGTTAGATATGTTTT+TGG | - | chr7.4:4172075-4172094 | MS.gene054425:intron | 20.0% |
| ! | AATAGAATTTACCTTGATTC+AGG | + | chr7.4:4171994-4172013 | None:intergenic | 25.0% |
| ! | ATAAAAAGCTGACATATTTC+CGG | + | chr7.4:4172103-4172122 | None:intergenic | 25.0% |
| ! | ATAGAATTTACCTTGATTCA+GGG | + | chr7.4:4171993-4172012 | None:intergenic | 25.0% |
| ! | ATGAATACAGAGTTTCAAAT+TGG | - | chr7.4:4171873-4171892 | MS.gene054425:CDS | 25.0% |
| ! | TACACTAACATAGTAATATC+TGG | + | chr7.4:4171792-4171811 | None:intergenic | 25.0% |
| !! | TTCAAATTGGAGAAATTTTC+GGG | - | chr7.4:4171886-4171905 | MS.gene054425:CDS | 25.0% |
| !!! | TTTTAATTTATTAGGAGAGG+CGG | - | chr7.4:4172249-4172268 | MS.gene054425:intron | 25.0% |
| AAAATGAGTCTCATGGAAAT+TGG | - | chr7.4:4172750-4172769 | MS.gene054425:CDS | 30.0% | |
| ATAGGAAACAAAGTGAATAG+AGG | - | chr7.4:4172537-4172556 | MS.gene054425:intron | 30.0% | |
| ATCACAATTGAAACTTCTGA+AGG | + | chr7.4:4172519-4172538 | None:intergenic | 30.0% | |
| TAAAAAGCTGACATATTTCC+GGG | + | chr7.4:4172102-4172121 | None:intergenic | 30.0% | |
| TAGAATTTACCTTGATTCAG+GGG | + | chr7.4:4171992-4172011 | None:intergenic | 30.0% | |
| TAGGAAACAAAGTGAATAGA+GGG | - | chr7.4:4172538-4172557 | MS.gene054425:intron | 30.0% | |
| TCAGAAGTTTCAATTGTGAT+AGG | - | chr7.4:4172519-4172538 | MS.gene054425:intron | 30.0% | |
| TGTATGTGCGGTATTTAAAA+TGG | + | chr7.4:4172229-4172248 | None:intergenic | 30.0% | |
| ! | AACATGGAGACACTATTTTA+CGG | - | chr7.4:4172597-4172616 | MS.gene054425:CDS | 30.0% |
| ! | AAGTGAAGATGCAAAACTTT+TGG | + | chr7.4:4172164-4172183 | None:intergenic | 30.0% |
| ! | AAGTTTTGCATCTTCACTTT+TGG | - | chr7.4:4172165-4172184 | MS.gene054425:intron | 30.0% |
| ! | AGATGCATGTAGATTTTCAT+TGG | - | chr7.4:4171579-4171598 | MS.gene054425:CDS | 30.0% |
| ! | CATTTGATGATAATGCAAGA+TGG | + | chr7.4:4172192-4172211 | None:intergenic | 30.0% |
| !! | AACTTTTGGAGACTAAAAGT+TGG | + | chr7.4:4172150-4172169 | None:intergenic | 30.0% |
| AGAATTTGCAACTGAGACAA+AGG | + | chr7.4:4171614-4171633 | None:intergenic | 35.0% | |
| AGATGAGAACAAACGTAACA+TGG | - | chr7.4:4172581-4172600 | MS.gene054425:CDS | 35.0% | |
| ATTGCAGAAACACAATCTTC+CGG | + | chr7.4:4171538-4171557 | None:intergenic | 35.0% | |
| ATTTCCAACTCCAGAACATT+GGG | + | chr7.4:4171966-4171985 | None:intergenic | 35.0% | |
| CAAGGAAACTATTGATGTAG+TGG | + | chr7.4:4171515-4171534 | None:intergenic | 35.0% | |
| GAAAATCTACATGCATCTTG+TGG | + | chr7.4:4171577-4171596 | None:intergenic | 35.0% | |
| GAAATTGGTCATCAGTTGAA+GGG | - | chr7.4:4172765-4172784 | MS.gene054425:CDS | 35.0% | |
| GGAGATTAAAATGAGTCTCA+TGG | - | chr7.4:4172743-4172762 | MS.gene054425:CDS | 35.0% | |
| GTGAACTGGTTAGAAATAGA+AGG | - | chr7.4:4172399-4172418 | MS.gene054425:CDS | 35.0% | |
| TAATATTTGCAGATTCCCAG+AGG | - | chr7.4:4172359-4172378 | MS.gene054425:CDS | 35.0% | |
| TACATCAATAGTTTCCTTGC+CGG | - | chr7.4:4171516-4171535 | MS.gene054425:CDS | 35.0% | |
| TACCATCTAAGAGAGAAGAT+GGG | - | chr7.4:4172673-4172692 | MS.gene054425:CDS | 35.0% | |
| TAGAAGGCAAAATTAGAACG+AGG | - | chr7.4:4172415-4172434 | MS.gene054425:CDS | 35.0% | |
| TATGCTGCATATAACGTGTT+TGG | + | chr7.4:4172450-4172469 | None:intergenic | 35.0% | |
| ! | ACATGGAGACACTATTTTAC+GGG | - | chr7.4:4172598-4172617 | MS.gene054425:CDS | 35.0% |
| !! | TTCTTGAAGGTATTGAAGTG+AGG | - | chr7.4:4172796-4172815 | MS.gene054425:CDS | 35.0% |
| !! | TTGCAAATTCTGACTTGGTT+TGG | - | chr7.4:4171623-4171642 | MS.gene054425:CDS | 35.0% |
| !!! | GTTAGATATGTTTTTGGTCC+CGG | - | chr7.4:4172081-4172100 | MS.gene054425:intron | 35.0% |
| ACAATGTCCTCGTAATCAGA+GGG | + | chr7.4:4171661-4171680 | None:intergenic | 40.0% | |
| ATTCAAGAACGAGAAGATGG+AGG | - | chr7.4:4172639-4172658 | MS.gene054425:CDS | 40.0% | |
| CTCAGTTGCAAATTCTGACT+TGG | - | chr7.4:4171618-4171637 | MS.gene054425:CDS | 40.0% | |
| CTCGTAATCAGAGGGTAAAA+AGG | + | chr7.4:4171653-4171672 | None:intergenic | 40.0% | |
| GATTTCCAACTCCAGAACAT+TGG | + | chr7.4:4171967-4171986 | None:intergenic | 40.0% | |
| GGAAATTGGTCATCAGTTGA+AGG | - | chr7.4:4172764-4172783 | MS.gene054425:CDS | 40.0% | |
| GTACCATCTAAGAGAGAAGA+TGG | - | chr7.4:4172672-4172691 | MS.gene054425:CDS | 40.0% | |
| GTGATTCAAGAACGAGAAGA+TGG | - | chr7.4:4172636-4172655 | MS.gene054425:CDS | 40.0% | |
| ! | CTTTTTACCCTCTGATTACG+AGG | - | chr7.4:4171651-4171670 | MS.gene054425:CDS | 40.0% |
| AAAGCCTCTCATAGAGCGTA+CGG | - | chr7.4:4172480-4172499 | MS.gene054425:intron | 45.0% | |
| AGAAACACAATCTTCCGGCA+AGG | + | chr7.4:4171533-4171552 | None:intergenic | 45.0% | |
| ATTGCCACCGTCAAGAAGAA+GGG | + | chr7.4:4171758-4171777 | None:intergenic | 45.0% | |
| ATTGGTCATCAGTTGAAGGG+AGG | - | chr7.4:4172768-4172787 | MS.gene054425:CDS | 45.0% | |
| CAAGAGAGTTGTCAATAGCG+TGG | - | chr7.4:4171932-4171951 | MS.gene054425:CDS | 45.0% | |
| CACCCATCTTCTCTCTTAGA+TGG | + | chr7.4:4172678-4172697 | None:intergenic | 45.0% | |
| CAGAACTGAGAACAGTGAAC+TGG | - | chr7.4:4172385-4172404 | MS.gene054425:CDS | 45.0% | |
| CATCTAAGAGAGAAGATGGG+TGG | - | chr7.4:4172676-4172695 | MS.gene054425:CDS | 45.0% | |
| GACAATGTCCTCGTAATCAG+AGG | + | chr7.4:4171662-4171681 | None:intergenic | 45.0% | |
| GGAAATCATCCCCTGAATCA+AGG | - | chr7.4:4171980-4171999 | MS.gene054425:intron | 45.0% | |
| GGTGGATGGAGATTGAGATT+GGG | - | chr7.4:4172694-4172713 | MS.gene054425:CDS | 45.0% | |
| GTGGATGGAGATTGAGATTG+GGG | - | chr7.4:4172695-4172714 | MS.gene054425:CDS | 45.0% | |
| TAAGAGAGAAGATGGGTGGA+TGG | - | chr7.4:4172680-4172699 | MS.gene054425:CDS | 45.0% | |
| TATTGCCACCGTCAAGAAGA+AGG | + | chr7.4:4171759-4171778 | None:intergenic | 45.0% | |
| TCTTCTTGACGGTGGCAATA+AGG | - | chr7.4:4171759-4171778 | MS.gene054425:CDS | 45.0% | |
| TTCTCAGTTCTGCTACCTCT+GGG | + | chr7.4:4172377-4172396 | None:intergenic | 45.0% | |
| TTTCAGTGGTGAAGGTGATG+AGG | - | chr7.4:4172722-4172741 | MS.gene054425:CDS | 45.0% | |
| ! | AAGGGAGGACTTGTTCTTGA+AGG | - | chr7.4:4172783-4172802 | MS.gene054425:CDS | 45.0% |
| ! | TGCAACTGAGACAAAGGTGT+TGG | + | chr7.4:4171608-4171627 | None:intergenic | 45.0% |
| !! | GAGATTGGGGAGTTTTTCAG+TGG | - | chr7.4:4172708-4172727 | MS.gene054425:CDS | 45.0% |
| !! | TTGACCCAATGTTCTGGAGT+TGG | - | chr7.4:4171959-4171978 | MS.gene054425:intron | 45.0% |
| AAGTCCGTACGCTCTATGAG+AGG | + | chr7.4:4172487-4172506 | None:intergenic | 50.0% | |
| GGGTGGATGGAGATTGAGAT+TGG | - | chr7.4:4172693-4172712 | MS.gene054425:CDS | 50.0% | |
| GTTCTCAGTTCTGCTACCTC+TGG | + | chr7.4:4172378-4172397 | None:intergenic | 50.0% | |
| TGTCGTCCCCTTCTTCTTGA+CGG | - | chr7.4:4171748-4171767 | MS.gene054425:CDS | 50.0% | |
| TTGCCACCGTCAAGAAGAAG+GGG | + | chr7.4:4171757-4171776 | None:intergenic | 50.0% | |
| !! | GGAGCATTGACCCAATGTTC+TGG | - | chr7.4:4171953-4171972 | MS.gene054425:intron | 50.0% |
| !! | GGGGAGTTTTTCAGTGGTGA+AGG | - | chr7.4:4172714-4172733 | MS.gene054425:CDS | 50.0% |
| CGTCCCCTTCTTCTTGACGG+TGG | - | chr7.4:4171751-4171770 | MS.gene054425:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4171505 | 4172833 | 4171505 | ID=MS.gene054425 |
| chr7.4 | mRNA | 4171505 | 4172833 | 4171505 | ID=MS.gene054425.t1;Parent=MS.gene054425 |
| chr7.4 | exon | 4172558 | 4172833 | 4172558 | ID=MS.gene054425.t1.exon1;Parent=MS.gene054425.t1 |
| chr7.4 | CDS | 4172558 | 4172833 | 4172558 | ID=cds.MS.gene054425.t1;Parent=MS.gene054425.t1 |
| chr7.4 | exon | 4172337 | 4172455 | 4172337 | ID=MS.gene054425.t1.exon2;Parent=MS.gene054425.t1 |
| chr7.4 | CDS | 4172337 | 4172455 | 4172337 | ID=cds.MS.gene054425.t1;Parent=MS.gene054425.t1 |
| chr7.4 | exon | 4171505 | 4171967 | 4171505 | ID=MS.gene054425.t1.exon3;Parent=MS.gene054425.t1 |
| chr7.4 | CDS | 4171505 | 4171967 | 4171505 | ID=cds.MS.gene054425.t1;Parent=MS.gene054425.t1 |
| Gene Sequence |
| Protein sequence |
