Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050935.t1 | XP_003626193.1 | 95.4 | 285 | 13 | 0 | 1 | 285 | 1 | 285 | 2.80E-153 | 551.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050935.t1 | O80494 | 47.9 | 280 | 138 | 4 | 10 | 283 | 3 | 280 | 7.7e-67 | 255.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050935.t1 | G7KWJ9 | 95.4 | 285 | 13 | 0 | 1 | 285 | 1 | 285 | 2.0e-153 | 551.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050935 | MS.gene054425 | 0.810496 | 1.12E-50 | -1.69E-46 |
| MS.gene050935 | MS.gene072532 | 0.938756 | 3.98E-99 | -1.69E-46 |
| MS.gene050935 | MS.gene22796 | 0.938937 | 2.94E-99 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22617 | MS.gene050935 | PPI |
| MS.gene050935 | MS.gene033388 | PPI |
| MS.gene054425 | MS.gene050935 | PPI |
| MS.gene050935 | MS.gene011426 | PPI |
| MS.gene050935 | MS.gene72988 | PPI |
| MS.gene072532 | MS.gene050935 | PPI |
| MS.gene40823 | MS.gene050935 | PPI |
| MS.gene20125 | MS.gene050935 | PPI |
| MS.gene050935 | MS.gene015546 | PPI |
| MS.gene015544 | MS.gene050935 | PPI |
| MS.gene072814 | MS.gene050935 | PPI |
| MS.gene22796 | MS.gene050935 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050935.t1 | MTR_7g112550 | 95.439 | 285 | 13 | 0 | 1 | 285 | 1 | 285 | 0.0 | 568 |
| MS.gene050935.t1 | MTR_1g083580 | 62.238 | 286 | 95 | 4 | 3 | 283 | 4 | 281 | 5.10e-129 | 368 |
| MS.gene050935.t1 | MTR_7g112560 | 45.652 | 276 | 126 | 5 | 10 | 283 | 4 | 257 | 3.56e-79 | 241 |
| MS.gene050935.t1 | MTR_1g079260 | 47.535 | 284 | 131 | 9 | 5 | 283 | 2 | 272 | 4.85e-77 | 236 |
| MS.gene050935.t1 | MTR_1g100597 | 45.230 | 283 | 139 | 7 | 5 | 283 | 2 | 272 | 6.87e-73 | 225 |
| MS.gene050935.t1 | MTR_1g079410 | 46.503 | 286 | 128 | 9 | 5 | 283 | 6 | 273 | 1.22e-72 | 224 |
| MS.gene050935.t1 | MTR_1g079460 | 47.670 | 279 | 122 | 7 | 10 | 283 | 7 | 266 | 1.61e-70 | 219 |
| MS.gene050935.t1 | MTR_1g079180 | 46.071 | 280 | 134 | 6 | 5 | 283 | 2 | 265 | 1.99e-70 | 218 |
| MS.gene050935.t1 | MTR_1g079140 | 43.643 | 291 | 147 | 8 | 10 | 283 | 16 | 306 | 1.72e-69 | 218 |
| MS.gene050935.t1 | MTR_1g079370 | 43.262 | 282 | 139 | 7 | 5 | 283 | 2 | 265 | 1.40e-68 | 214 |
| MS.gene050935.t1 | MTR_1g079200 | 45.035 | 282 | 133 | 7 | 5 | 283 | 2 | 264 | 5.03e-67 | 209 |
| MS.gene050935.t1 | MTR_1g079380 | 44.876 | 283 | 135 | 7 | 5 | 284 | 2 | 266 | 1.24e-65 | 207 |
| MS.gene050935.t1 | MTR_4g023570 | 42.754 | 276 | 114 | 6 | 10 | 283 | 4 | 237 | 2.61e-64 | 202 |
| MS.gene050935.t1 | MTR_1g079850 | 43.214 | 280 | 148 | 7 | 10 | 283 | 7 | 281 | 2.19e-63 | 201 |
| MS.gene050935.t1 | MTR_1g079230 | 43.662 | 284 | 143 | 7 | 5 | 283 | 2 | 273 | 3.60e-61 | 195 |
| MS.gene050935.t1 | MTR_1g079250 | 42.958 | 284 | 140 | 10 | 10 | 283 | 7 | 278 | 2.49e-56 | 183 |
| MS.gene050935.t1 | MTR_1g079400 | 40.283 | 283 | 144 | 8 | 10 | 284 | 15 | 280 | 2.94e-56 | 182 |
| MS.gene050935.t1 | MTR_1g026510 | 39.792 | 289 | 149 | 11 | 10 | 284 | 7 | 284 | 3.42e-55 | 181 |
| MS.gene050935.t1 | MTR_1g100613 | 43.902 | 246 | 125 | 7 | 23 | 264 | 5 | 241 | 3.69e-54 | 176 |
| MS.gene050935.t1 | MTR_3g452600 | 42.086 | 278 | 136 | 9 | 10 | 284 | 13 | 268 | 8.96e-53 | 173 |
| MS.gene050935.t1 | MTR_1g079350 | 42.606 | 284 | 138 | 12 | 10 | 283 | 7 | 275 | 3.33e-52 | 172 |
| MS.gene050935.t1 | MTR_2g079100 | 40.714 | 280 | 135 | 9 | 6 | 280 | 8 | 261 | 4.63e-52 | 171 |
| MS.gene050935.t1 | MTR_3g006850 | 40.397 | 302 | 146 | 10 | 10 | 283 | 20 | 315 | 2.41e-50 | 169 |
| MS.gene050935.t1 | MTR_1g079340 | 38.488 | 291 | 151 | 10 | 10 | 283 | 46 | 325 | 1.14e-45 | 157 |
| MS.gene050935.t1 | MTR_3g450990 | 35.690 | 297 | 144 | 10 | 10 | 284 | 13 | 284 | 1.79e-39 | 139 |
| MS.gene050935.t1 | MTR_1g078470 | 43.956 | 182 | 84 | 5 | 102 | 283 | 21 | 184 | 3.76e-38 | 133 |
| MS.gene050935.t1 | MTR_7g096300 | 37.452 | 259 | 135 | 7 | 10 | 264 | 7 | 242 | 9.61e-37 | 139 |
| MS.gene050935.t1 | MTR_1g079130 | 42.857 | 189 | 97 | 6 | 106 | 283 | 1 | 189 | 8.11e-36 | 127 |
| MS.gene050935.t1 | MTR_1g079240 | 40.099 | 202 | 94 | 6 | 85 | 283 | 2 | 179 | 1.47e-29 | 110 |
| MS.gene050935.t1 | MTR_1g101390 | 25.965 | 285 | 175 | 8 | 5 | 282 | 26 | 281 | 6.24e-27 | 106 |
| MS.gene050935.t1 | MTR_7g103380 | 25.606 | 289 | 180 | 8 | 6 | 282 | 18 | 283 | 1.21e-25 | 103 |
| MS.gene050935.t1 | MTR_0113s0040 | 25.704 | 284 | 183 | 7 | 3 | 283 | 18 | 276 | 1.70e-25 | 102 |
| MS.gene050935.t1 | MTR_0002s0020 | 25.180 | 278 | 177 | 6 | 10 | 280 | 25 | 278 | 8.96e-24 | 98.2 |
| MS.gene050935.t1 | MTR_1g076870 | 43.382 | 136 | 71 | 4 | 133 | 264 | 2 | 135 | 7.90e-22 | 89.0 |
| MS.gene050935.t1 | MTR_5g010800 | 23.592 | 284 | 183 | 8 | 5 | 282 | 15 | 270 | 1.98e-21 | 91.7 |
| MS.gene050935.t1 | MTR_1g079350 | 48.598 | 107 | 50 | 4 | 10 | 113 | 7 | 111 | 3.49e-21 | 89.7 |
| MS.gene050935.t1 | MTR_4g083970 | 31.452 | 248 | 127 | 10 | 41 | 283 | 81 | 290 | 3.76e-21 | 91.3 |
| MS.gene050935.t1 | MTR_4g102770 | 23.913 | 276 | 183 | 5 | 10 | 282 | 22 | 273 | 5.70e-20 | 87.8 |
| MS.gene050935.t1 | MTR_7g096310 | 44.828 | 87 | 46 | 1 | 83 | 169 | 57 | 141 | 1.47e-16 | 75.9 |
| MS.gene050935.t1 | MTR_2g042540 | 35.000 | 140 | 75 | 5 | 10 | 148 | 7 | 131 | 1.38e-13 | 66.6 |
| MS.gene050935.t1 | MTR_1g079210 | 39.024 | 123 | 62 | 5 | 134 | 251 | 7 | 121 | 3.14e-12 | 63.2 |
| MS.gene050935.t1 | MTR_3g058640 | 35.593 | 118 | 57 | 4 | 133 | 249 | 7 | 106 | 4.55e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050935.t1 | AT1G09155 | 47.857 | 280 | 138 | 4 | 10 | 283 | 3 | 280 | 3.90e-87 | 262 |
| MS.gene050935.t1 | AT1G56240 | 47.872 | 282 | 139 | 5 | 7 | 282 | 1 | 280 | 1.81e-82 | 250 |
| MS.gene050935.t1 | AT1G56250 | 48.057 | 283 | 139 | 5 | 7 | 283 | 1 | 281 | 1.93e-82 | 249 |
| MS.gene050935.t1 | AT2G02360 | 42.857 | 280 | 127 | 8 | 9 | 282 | 16 | 268 | 1.04e-68 | 214 |
| MS.gene050935.t1 | AT2G02240 | 44.484 | 281 | 132 | 6 | 4 | 282 | 58 | 316 | 3.01e-68 | 215 |
| MS.gene050935.t1 | AT2G02230 | 37.987 | 308 | 154 | 8 | 9 | 285 | 34 | 335 | 3.23e-64 | 205 |
| MS.gene050935.t1 | AT2G02250 | 39.858 | 281 | 142 | 7 | 9 | 285 | 49 | 306 | 3.14e-63 | 201 |
| MS.gene050935.t1 | AT2G02340 | 38.849 | 278 | 150 | 6 | 10 | 282 | 39 | 301 | 2.06e-61 | 197 |
| MS.gene050935.t1 | AT1G80110 | 42.652 | 279 | 129 | 8 | 9 | 282 | 3 | 255 | 1.93e-60 | 192 |
| MS.gene050935.t1 | AT2G02320 | 38.246 | 285 | 143 | 11 | 6 | 282 | 39 | 298 | 4.56e-53 | 175 |
| MS.gene050935.t1 | AT2G02350 | 37.063 | 286 | 149 | 9 | 4 | 282 | 21 | 282 | 1.29e-49 | 166 |
| MS.gene050935.t1 | AT2G02300 | 34.471 | 293 | 143 | 8 | 3 | 285 | 30 | 283 | 5.48e-47 | 159 |
| MS.gene050935.t1 | AT2G02310 | 34.409 | 279 | 156 | 6 | 10 | 283 | 48 | 304 | 1.29e-45 | 156 |
| MS.gene050935.t1 | AT5G24560 | 42.623 | 183 | 91 | 3 | 6 | 187 | 2 | 171 | 2.72e-41 | 141 |
| MS.gene050935.t1 | AT5G24560 | 55.102 | 49 | 21 | 1 | 237 | 284 | 145 | 193 | 5.87e-11 | 60.8 |
| MS.gene050935.t1 | AT3G53000 | 25.362 | 276 | 188 | 5 | 10 | 282 | 24 | 284 | 2.14e-26 | 105 |
| MS.gene050935.t1 | AT3G61060 | 23.132 | 281 | 187 | 7 | 7 | 283 | 25 | 280 | 9.49e-22 | 92.8 |
| MS.gene050935.t1 | AT5G52120 | 35.135 | 148 | 91 | 1 | 10 | 152 | 24 | 171 | 1.02e-21 | 92.8 |
| MS.gene050935.t1 | AT3G61060 | 23.050 | 282 | 187 | 8 | 7 | 283 | 25 | 281 | 3.69e-20 | 88.6 |
| MS.gene050935.t1 | AT1G63090 | 31.875 | 160 | 105 | 2 | 10 | 169 | 29 | 184 | 1.41e-19 | 86.7 |
| MS.gene050935.t1 | AT2G02350 | 32.787 | 183 | 99 | 7 | 106 | 282 | 1 | 165 | 4.10e-18 | 80.5 |
| MS.gene050935.t1 | AT1G12710 | 31.690 | 142 | 95 | 1 | 10 | 151 | 31 | 170 | 8.08e-18 | 82.0 |
| MS.gene050935.t1 | AT4G19840 | 32.796 | 186 | 87 | 9 | 104 | 284 | 94 | 246 | 3.56e-16 | 76.6 |
| MS.gene050935.t1 | AT4G19850 | 32.663 | 199 | 81 | 10 | 100 | 284 | 18 | 177 | 1.07e-15 | 73.9 |
| MS.gene050935.t1 | AT4G19850 | 32.663 | 199 | 81 | 10 | 100 | 284 | 60 | 219 | 1.81e-15 | 73.9 |
| MS.gene050935.t1 | AT1G12710 | 24.579 | 297 | 196 | 8 | 10 | 282 | 31 | 323 | 5.01e-13 | 68.6 |
| MS.gene050935.t1 | AT1G65390 | 29.412 | 187 | 93 | 7 | 104 | 284 | 258 | 411 | 7.56e-13 | 68.6 |
| MS.gene050935.t1 | AT4G19850 | 43.023 | 86 | 41 | 3 | 100 | 178 | 60 | 144 | 6.65e-12 | 64.3 |
Find 63 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGAATTTACCTTGATTC+AGG | 0.207601 | 7.1:+3574097 | None:intergenic |
| CACTCAACATTATGTATGTT+TGG | 0.258964 | 7.1:+3573269 | None:intergenic |
| ATGAATACAGAGTTTCAAAT+TGG | 0.315101 | 7.1:-3574215 | MS.gene050935:intron |
| TCAGAAGTTTCAATTGTGAT+AGG | 0.336359 | 7.1:-3573570 | MS.gene050935:CDS |
| TCTTCTTGACGGTGGCAATA+AGG | 0.346182 | 7.1:-3574329 | MS.gene050935:intron |
| AAAATGAGTCTCATGGAAAT+TGG | 0.352489 | 7.1:-3573339 | MS.gene050935:CDS |
| CTCAGTTGCAAATTCTGACT+TGG | 0.367182 | 7.1:-3574470 | MS.gene050935:CDS |
| TTGCAAATTCTGACTTGGTT+TGG | 0.367693 | 7.1:-3574465 | MS.gene050935:CDS |
| GTTCTCAGTTCTGCTACCTC+TGG | 0.373037 | 7.1:+3573714 | None:intergenic |
| TGTCGTCCCCTTCTTCTTGA+CGG | 0.380322 | 7.1:-3574340 | MS.gene050935:CDS |
| TACATCAATAGTTTCCTTGC+CGG | 0.382514 | 7.1:-3574572 | MS.gene050935:CDS |
| ACTCAACATTATGTATGTTT+GGG | 0.392059 | 7.1:+3573270 | None:intergenic |
| GGAGCATTGACCCAATGTTC+TGG | 0.400215 | 7.1:-3574135 | MS.gene050935:CDS |
| CACCCATCTTCTCTCTTAGA+TGG | 0.405307 | 7.1:+3573414 | None:intergenic |
| GGGTGGATGGAGATTGAGAT+TGG | 0.425991 | 7.1:-3573396 | MS.gene050935:CDS |
| GTGAACTGGTTAGAAATAGA+AGG | 0.433687 | 7.1:-3573690 | MS.gene050935:CDS |
| AAGGGAGGACTTGTTCTTGA+AGG | 0.435815 | 7.1:-3573306 | MS.gene050935:CDS |
| GGTGGATGGAGATTGAGATT+GGG | 0.437845 | 7.1:-3573395 | MS.gene050935:CDS |
| TATTGATGTAGTGGAATTCA+TGG | 0.439823 | 7.1:+3574585 | None:intergenic |
| CTCGTAATCAGAGGGTAAAA+AGG | 0.446015 | 7.1:+3574438 | None:intergenic |
| TATGCTGCATATAACGTGTT+TGG | 0.457027 | 7.1:+3573642 | None:intergenic |
| ATTTCCAACTCCAGAACATT+GGG | 0.462304 | 7.1:+3574125 | None:intergenic |
| ATAGAATTTACCTTGATTCA+GGG | 0.467505 | 7.1:+3574098 | None:intergenic |
| TTCTCAGTTCTGCTACCTCT+GGG | 0.471421 | 7.1:+3573715 | None:intergenic |
| GTGATTCAAGAACGAGAAGA+TGG | 0.471594 | 7.1:-3573453 | MS.gene050935:CDS |
| ATAGGAAACAAAGTGAATAG+AGG | 0.475105 | 7.1:-3573552 | MS.gene050935:CDS |
| ATTGCAGAAACACAATCTTC+CGG | 0.478429 | 7.1:+3574553 | None:intergenic |
| TTGACCCAATGTTCTGGAGT+TGG | 0.488142 | 7.1:-3574129 | MS.gene050935:CDS |
| GTACCATCTAAGAGAGAAGA+TGG | 0.494512 | 7.1:-3573417 | MS.gene050935:CDS |
| TGCAACTGAGACAAAGGTGT+TGG | 0.499814 | 7.1:+3574483 | None:intergenic |
| TTTCAGTGGTGAAGGTGATG+AGG | 0.505724 | 7.1:-3573367 | MS.gene050935:CDS |
| TATTGCCACCGTCAAGAAGA+AGG | 0.507935 | 7.1:+3574332 | None:intergenic |
| CAGAACTGAGAACAGTGAAC+TGG | 0.517337 | 7.1:-3573704 | MS.gene050935:CDS |
| GGAAATCATCCCCTGAATCA+AGG | 0.518353 | 7.1:-3574108 | MS.gene050935:intron |
| GACAATGTCCTCGTAATCAG+AGG | 0.522264 | 7.1:+3574429 | None:intergenic |
| GATTTCCAACTCCAGAACAT+TGG | 0.527865 | 7.1:+3574124 | None:intergenic |
| GGAGATTAAAATGAGTCTCA+TGG | 0.532086 | 7.1:-3573346 | MS.gene050935:CDS |
| CAAGGAAACTATTGATGTAG+TGG | 0.548716 | 7.1:+3574576 | None:intergenic |
| CGTCCCCTTCTTCTTGACGG+TGG | 0.557206 | 7.1:-3574337 | MS.gene050935:CDS |
| GGAAATTGGTCATCAGTTGA+AGG | 0.562082 | 7.1:-3573325 | MS.gene050935:CDS |
| AGATGAGAACAAACGTAACA+TGG | 0.562427 | 7.1:-3573508 | MS.gene050935:CDS |
| AGAATTTGCAACTGAGACAA+AGG | 0.565980 | 7.1:+3574477 | None:intergenic |
| TAAGAGAGAAGATGGGTGGA+TGG | 0.569382 | 7.1:-3573409 | MS.gene050935:CDS |
| ATTGCCACCGTCAAGAAGAA+GGG | 0.569926 | 7.1:+3574333 | None:intergenic |
| GTGGATGGAGATTGAGATTG+GGG | 0.574135 | 7.1:-3573394 | MS.gene050935:CDS |
| TAGGAAACAAAGTGAATAGA+GGG | 0.576702 | 7.1:-3573551 | MS.gene050935:CDS |
| AAAGCCTCTCATAGAGCGTA+CGG | 0.576817 | 7.1:-3573609 | MS.gene050935:CDS |
| TAGAATTTACCTTGATTCAG+GGG | 0.577464 | 7.1:+3574099 | None:intergenic |
| TTCTTGAAGGTATTGAAGTG+AGG | 0.581504 | 7.1:-3573293 | MS.gene050935:CDS |
| ATCACAATTGAAACTTCTGA+AGG | 0.588980 | 7.1:+3573573 | None:intergenic |
| GAAATTGGTCATCAGTTGAA+GGG | 0.604852 | 7.1:-3573324 | MS.gene050935:CDS |
| CAAGAGAGTTGTCAATAGCG+TGG | 0.617687 | 7.1:-3574156 | MS.gene050935:CDS |
| AAGTCCGTACGCTCTATGAG+AGG | 0.627073 | 7.1:+3573605 | None:intergenic |
| TTGCCACCGTCAAGAAGAAG+GGG | 0.644519 | 7.1:+3574334 | None:intergenic |
| CATCTAAGAGAGAAGATGGG+TGG | 0.646865 | 7.1:-3573413 | MS.gene050935:CDS |
| ACAATGTCCTCGTAATCAGA+GGG | 0.655750 | 7.1:+3574430 | None:intergenic |
| GAAAATCTACATGCATCTTG+TGG | 0.656372 | 7.1:+3574514 | None:intergenic |
| TACCATCTAAGAGAGAAGAT+GGG | 0.658212 | 7.1:-3573416 | MS.gene050935:CDS |
| AGAAACACAATCTTCCGGCA+AGG | 0.667047 | 7.1:+3574558 | None:intergenic |
| ATTCAAGAACGAGAAGATGG+AGG | 0.667052 | 7.1:-3573450 | MS.gene050935:CDS |
| ATTGGTCATCAGTTGAAGGG+AGG | 0.682333 | 7.1:-3573321 | MS.gene050935:CDS |
| TAGAAGGCAAAATTAGAACG+AGG | 0.714287 | 7.1:-3573674 | MS.gene050935:CDS |
| TAATATTTGCAGATTCCCAG+AGG | 0.726581 | 7.1:-3573730 | MS.gene050935:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAACAAAAACTAAATTA+AGG | + | chr7.1:3573603-3573622 | None:intergenic | 10.0% |
| !! | AATAAATTAAAATGTATGTG+CGG | + | chr7.1:3574013-3574032 | None:intergenic | 15.0% |
| !! | GAAAAAAATAGTTGATTAAT+TGG | + | chr7.1:3573833-3573852 | None:intergenic | 15.0% |
| !!! | CACATACATTTTAATTTATT+AGG | - | chr7.1:3574013-3574032 | MS.gene050935:intron | 15.0% |
| !!! | TTAATTTTTGTTTACTATCA+GGG | + | chr7.1:3574104-3574123 | None:intergenic | 15.0% |
| !!! | TTTAATTTTTGTTTACTATC+AGG | + | chr7.1:3574105-3574124 | None:intergenic | 15.0% |
| !!! | ACATTTTAATTTATTAGGAG+AGG | - | chr7.1:3574018-3574037 | MS.gene050935:intron | 20.0% |
| !!! | TTTCAAATTGGAGAAATTTT+CGG | - | chr7.1:3573658-3573677 | MS.gene050935:CDS | 20.0% |
| !!! | TTTTTCGTTAGATATGTTTT+TGG | - | chr7.1:3573847-3573866 | MS.gene050935:intron | 20.0% |
| ! | AATAGAATTTACCTTGATTC+AGG | + | chr7.1:3573767-3573786 | None:intergenic | 25.0% |
| ! | ATAAAAAGCTGACATATTTC+CGG | + | chr7.1:3573875-3573894 | None:intergenic | 25.0% |
| ! | ATAGAATTTACCTTGATTCA+GGG | + | chr7.1:3573766-3573785 | None:intergenic | 25.0% |
| ! | ATGAATACAGAGTTTCAAAT+TGG | - | chr7.1:3573646-3573665 | MS.gene050935:CDS | 25.0% |
| ! | TACACTAACATAGTAATATC+TGG | + | chr7.1:3573565-3573584 | None:intergenic | 25.0% |
| !! | TTCAAATTGGAGAAATTTTC+GGG | - | chr7.1:3573659-3573678 | MS.gene050935:CDS | 25.0% |
| !!! | TTTTAATTTATTAGGAGAGG+CGG | - | chr7.1:3574021-3574040 | MS.gene050935:intron | 25.0% |
| AAAATGAGTCTCATGGAAAT+TGG | - | chr7.1:3574522-3574541 | MS.gene050935:CDS | 30.0% | |
| ATAGGAAACAAAGTGAATAG+AGG | - | chr7.1:3574309-3574328 | MS.gene050935:intron | 30.0% | |
| ATCACAATTGAAACTTCTGA+AGG | + | chr7.1:3574291-3574310 | None:intergenic | 30.0% | |
| TAAAAAGCTGACATATTTCC+GGG | + | chr7.1:3573874-3573893 | None:intergenic | 30.0% | |
| TAGAATTTACCTTGATTCAG+GGG | + | chr7.1:3573765-3573784 | None:intergenic | 30.0% | |
| TAGGAAACAAAGTGAATAGA+GGG | - | chr7.1:3574310-3574329 | MS.gene050935:intron | 30.0% | |
| TCAGAAGTTTCAATTGTGAT+AGG | - | chr7.1:3574291-3574310 | MS.gene050935:intron | 30.0% | |
| TGTATGTGCGGTATTTAAAA+TGG | + | chr7.1:3574001-3574020 | None:intergenic | 30.0% | |
| ! | AACATGGAGACACTATTTTA+CGG | - | chr7.1:3574369-3574388 | MS.gene050935:CDS | 30.0% |
| ! | AAGTGAAGATGCAAAACTTT+TGG | + | chr7.1:3573936-3573955 | None:intergenic | 30.0% |
| ! | AAGTTTTGCATCTTCACTTT+TGG | - | chr7.1:3573937-3573956 | MS.gene050935:intron | 30.0% |
| ! | AGATGCATGTAGATTTTCAT+TGG | - | chr7.1:3573352-3573371 | MS.gene050935:CDS | 30.0% |
| ! | CATTTGATGATAATGCAAGA+TGG | + | chr7.1:3573964-3573983 | None:intergenic | 30.0% |
| !! | AACTTTTGGAGACTAAAAGT+TGG | + | chr7.1:3573922-3573941 | None:intergenic | 30.0% |
| AGAATTTGCAACTGAGACAA+AGG | + | chr7.1:3573387-3573406 | None:intergenic | 35.0% | |
| AGATGAGAACAAACGTAACA+TGG | - | chr7.1:3574353-3574372 | MS.gene050935:CDS | 35.0% | |
| ATTGCAGAAACACAATCTTC+CGG | + | chr7.1:3573311-3573330 | None:intergenic | 35.0% | |
| ATTTCCAACTCCAGAACATT+GGG | + | chr7.1:3573739-3573758 | None:intergenic | 35.0% | |
| CAAGGAAACTATTGATGTAG+TGG | + | chr7.1:3573288-3573307 | None:intergenic | 35.0% | |
| GAAAATCTACATGCATCTTG+TGG | + | chr7.1:3573350-3573369 | None:intergenic | 35.0% | |
| GAAATTGGTCATCAGTTGAA+GGG | - | chr7.1:3574537-3574556 | MS.gene050935:CDS | 35.0% | |
| GGAGATTAAAATGAGTCTCA+TGG | - | chr7.1:3574515-3574534 | MS.gene050935:CDS | 35.0% | |
| GTGAACTGGTTAGAAATAGA+AGG | - | chr7.1:3574171-3574190 | MS.gene050935:CDS | 35.0% | |
| TAATATTTGCAGATTCCCAG+AGG | - | chr7.1:3574131-3574150 | MS.gene050935:CDS | 35.0% | |
| TACATCAATAGTTTCCTTGC+CGG | - | chr7.1:3573289-3573308 | MS.gene050935:CDS | 35.0% | |
| TACCATCTAAGAGAGAAGAT+GGG | - | chr7.1:3574445-3574464 | MS.gene050935:CDS | 35.0% | |
| TAGAAGGCAAAATTAGAACG+AGG | - | chr7.1:3574187-3574206 | MS.gene050935:CDS | 35.0% | |
| TATGCTGCATATAACGTGTT+TGG | + | chr7.1:3574222-3574241 | None:intergenic | 35.0% | |
| ! | ACATGGAGACACTATTTTAC+GGG | - | chr7.1:3574370-3574389 | MS.gene050935:CDS | 35.0% |
| !! | TTCTTGAAGGTATTGAAGTG+AGG | - | chr7.1:3574568-3574587 | MS.gene050935:CDS | 35.0% |
| !! | TTGCAAATTCTGACTTGGTT+TGG | - | chr7.1:3573396-3573415 | MS.gene050935:CDS | 35.0% |
| !!! | GTTAGATATGTTTTTGGTCC+CGG | - | chr7.1:3573853-3573872 | MS.gene050935:intron | 35.0% |
| ACAATGTCCTCGTAATCAGA+GGG | + | chr7.1:3573434-3573453 | None:intergenic | 40.0% | |
| ATTCAAGAACGAGAAGATGG+AGG | - | chr7.1:3574411-3574430 | MS.gene050935:CDS | 40.0% | |
| CTCAGTTGCAAATTCTGACT+TGG | - | chr7.1:3573391-3573410 | MS.gene050935:CDS | 40.0% | |
| CTCGTAATCAGAGGGTAAAA+AGG | + | chr7.1:3573426-3573445 | None:intergenic | 40.0% | |
| GATTTCCAACTCCAGAACAT+TGG | + | chr7.1:3573740-3573759 | None:intergenic | 40.0% | |
| GGAAATTGGTCATCAGTTGA+AGG | - | chr7.1:3574536-3574555 | MS.gene050935:CDS | 40.0% | |
| GTACCATCTAAGAGAGAAGA+TGG | - | chr7.1:3574444-3574463 | MS.gene050935:CDS | 40.0% | |
| GTGATTCAAGAACGAGAAGA+TGG | - | chr7.1:3574408-3574427 | MS.gene050935:CDS | 40.0% | |
| ! | CTTTTTACCCTCTGATTACG+AGG | - | chr7.1:3573424-3573443 | MS.gene050935:CDS | 40.0% |
| AAAGCCTCTCATAGAGCGTA+CGG | - | chr7.1:3574252-3574271 | MS.gene050935:intron | 45.0% | |
| AGAAACACAATCTTCCGGCA+AGG | + | chr7.1:3573306-3573325 | None:intergenic | 45.0% | |
| ATTGCCACCGTCAAGAAGAA+GGG | + | chr7.1:3573531-3573550 | None:intergenic | 45.0% | |
| ATTGGTCATCAGTTGAAGGG+AGG | - | chr7.1:3574540-3574559 | MS.gene050935:CDS | 45.0% | |
| CAAGAGAGTTGTCAATAGCG+TGG | - | chr7.1:3573705-3573724 | MS.gene050935:CDS | 45.0% | |
| CACCCATCTTCTCTCTTAGA+TGG | + | chr7.1:3574450-3574469 | None:intergenic | 45.0% | |
| CAGAACTGAGAACAGTGAAC+TGG | - | chr7.1:3574157-3574176 | MS.gene050935:CDS | 45.0% | |
| CATCTAAGAGAGAAGATGGG+TGG | - | chr7.1:3574448-3574467 | MS.gene050935:CDS | 45.0% | |
| GACAATGTCCTCGTAATCAG+AGG | + | chr7.1:3573435-3573454 | None:intergenic | 45.0% | |
| GGAAATCATCCCCTGAATCA+AGG | - | chr7.1:3573753-3573772 | MS.gene050935:intron | 45.0% | |
| GGTGGATGGAGATTGAGATT+GGG | - | chr7.1:3574466-3574485 | MS.gene050935:CDS | 45.0% | |
| GTGGATGGAGATTGAGATTG+GGG | - | chr7.1:3574467-3574486 | MS.gene050935:CDS | 45.0% | |
| TAAGAGAGAAGATGGGTGGA+TGG | - | chr7.1:3574452-3574471 | MS.gene050935:CDS | 45.0% | |
| TATTGCCACCGTCAAGAAGA+AGG | + | chr7.1:3573532-3573551 | None:intergenic | 45.0% | |
| TCTTCTTGACGGTGGCAATA+AGG | - | chr7.1:3573532-3573551 | MS.gene050935:CDS | 45.0% | |
| TTCTCAGTTCTGCTACCTCT+GGG | + | chr7.1:3574149-3574168 | None:intergenic | 45.0% | |
| TTTCAGTGGTGAAGGTGATG+AGG | - | chr7.1:3574494-3574513 | MS.gene050935:CDS | 45.0% | |
| ! | AAGGGAGGACTTGTTCTTGA+AGG | - | chr7.1:3574555-3574574 | MS.gene050935:CDS | 45.0% |
| ! | TGCAACTGAGACAAAGGTGT+TGG | + | chr7.1:3573381-3573400 | None:intergenic | 45.0% |
| !! | GAGATTGGGGAGTTTTTCAG+TGG | - | chr7.1:3574480-3574499 | MS.gene050935:CDS | 45.0% |
| !! | TTGACCCAATGTTCTGGAGT+TGG | - | chr7.1:3573732-3573751 | MS.gene050935:intron | 45.0% |
| AAGTCCGTACGCTCTATGAG+AGG | + | chr7.1:3574259-3574278 | None:intergenic | 50.0% | |
| GGGTGGATGGAGATTGAGAT+TGG | - | chr7.1:3574465-3574484 | MS.gene050935:CDS | 50.0% | |
| GTTCTCAGTTCTGCTACCTC+TGG | + | chr7.1:3574150-3574169 | None:intergenic | 50.0% | |
| TGTCGTCCCCTTCTTCTTGA+CGG | - | chr7.1:3573521-3573540 | MS.gene050935:CDS | 50.0% | |
| TTGCCACCGTCAAGAAGAAG+GGG | + | chr7.1:3573530-3573549 | None:intergenic | 50.0% | |
| !! | GGAGCATTGACCCAATGTTC+TGG | - | chr7.1:3573726-3573745 | MS.gene050935:intron | 50.0% |
| !! | GGGGAGTTTTTCAGTGGTGA+AGG | - | chr7.1:3574486-3574505 | MS.gene050935:CDS | 50.0% |
| CGTCCCCTTCTTCTTGACGG+TGG | - | chr7.1:3573524-3573543 | MS.gene050935:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3573278 | 3574605 | 3573278 | ID=MS.gene050935 |
| chr7.1 | mRNA | 3573278 | 3574605 | 3573278 | ID=MS.gene050935.t1;Parent=MS.gene050935 |
| chr7.1 | exon | 3574330 | 3574605 | 3574330 | ID=MS.gene050935.t1.exon1;Parent=MS.gene050935.t1 |
| chr7.1 | CDS | 3574330 | 3574605 | 3574330 | ID=cds.MS.gene050935.t1;Parent=MS.gene050935.t1 |
| chr7.1 | exon | 3574109 | 3574227 | 3574109 | ID=MS.gene050935.t1.exon2;Parent=MS.gene050935.t1 |
| chr7.1 | CDS | 3574109 | 3574227 | 3574109 | ID=cds.MS.gene050935.t1;Parent=MS.gene050935.t1 |
| chr7.1 | exon | 3573278 | 3573740 | 3573278 | ID=MS.gene050935.t1.exon3;Parent=MS.gene050935.t1 |
| chr7.1 | CDS | 3573278 | 3573740 | 3573278 | ID=cds.MS.gene050935.t1;Parent=MS.gene050935.t1 |
| Gene Sequence |
| Protein sequence |
