AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81067


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81067.t1 MTR_8g023790 95.341 279 2 1 1 279 1 268 0.0 536
MS.gene81067.t1 MTR_2g042720 67.281 217 71 0 61 277 49 265 1.28e-106 310
MS.gene81067.t1 MTR_3g435460 50.000 244 112 5 36 277 15 250 3.35e-75 230
MS.gene81067.t1 MTR_3g435460 56.383 188 76 2 90 277 8 189 1.34e-69 213
MS.gene81067.t1 MTR_3g101670 50.237 211 100 4 66 273 51 259 9.07e-66 206
MS.gene81067.t1 MTR_5g098780 43.096 239 111 7 61 276 36 272 2.59e-52 172
MS.gene81067.t1 MTR_5g098785 42.500 240 112 7 61 276 37 274 4.59e-52 171
MS.gene81067.t1 MTR_6g033320 40.284 211 98 7 77 278 49 240 2.75e-40 140
MS.gene81067.t1 MTR_6g011880 36.704 267 117 12 43 274 13 262 2.65e-38 135
MS.gene81067.t1 MTR_6g011870 36.614 254 115 11 43 267 13 249 1.19e-37 134
MS.gene81067.t1 MTR_4g094605 39.070 215 95 9 72 267 53 250 1.44e-36 131
MS.gene81067.t1 MTR_6g011890 36.090 266 118 12 44 274 14 262 1.65e-36 131
MS.gene81067.t1 MTR_5g097280 36.179 246 118 10 45 267 20 249 4.02e-36 130
MS.gene81067.t1 MTR_6g012110 34.884 258 122 10 39 267 9 249 7.12e-36 129
MS.gene81067.t1 MTR_6g012080 34.496 258 123 10 39 267 9 249 1.33e-35 129
MS.gene81067.t1 MTR_1g026550 32.075 265 152 6 35 277 70 328 1.70e-35 130
MS.gene81067.t1 MTR_4g015570 30.435 299 121 6 42 277 13 287 4.63e-35 128
MS.gene81067.t1 MTR_2g008610 35.200 250 125 8 22 248 13 248 6.13e-34 124
MS.gene81067.t1 MTR_2g081090 34.274 248 124 10 43 267 17 248 4.59e-33 122
MS.gene81067.t1 MTR_2g081090 36.574 216 101 9 72 267 22 221 1.08e-32 120
MS.gene81067.t1 MTR_6g060175 38.140 215 96 7 72 267 74 270 5.98e-31 117
MS.gene81067.t1 MTR_6g043600 37.634 186 92 6 84 267 50 213 3.59e-27 105
MS.gene81067.t1 MTR_6g060175 35.814 215 91 8 72 267 74 260 9.56e-26 103
MS.gene81067.t1 MTR_3g070340 31.535 241 87 7 71 257 54 270 8.37e-25 100
MS.gene81067.t1 MTR_5g098770 47.945 73 37 1 205 277 21 92 9.96e-17 73.9
MS.gene81067.t1 MTR_2g436960 46.667 90 42 2 188 277 16 99 2.58e-16 73.2
MS.gene81067.t1 MTR_1g026550 34.058 138 73 4 35 159 70 202 1.21e-15 74.7
MS.gene81067.t1 MTR_0003s0060 41.667 96 50 2 182 277 3 92 2.40e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81067.t1 AT3G61470 89.778 225 22 1 56 279 33 257 1.01e-149 419
MS.gene81067.t1 AT1G19150 61.751 217 83 0 61 277 52 268 1.31e-101 298
MS.gene81067.t1 AT3G47470 47.809 251 124 3 28 277 7 251 3.19e-75 230
MS.gene81067.t1 AT5G28450 91.262 103 9 0 177 279 71 173 1.13e-65 203
MS.gene81067.t1 AT1G45474 46.352 233 113 4 51 272 16 247 3.10e-63 199
MS.gene81067.t1 AT1G45474 46.352 233 113 4 51 272 16 247 3.10e-63 199
MS.gene81067.t1 AT1G61520 43.265 245 114 8 46 267 19 261 1.36e-53 175
MS.gene81067.t1 AT1G61520 43.265 245 114 8 46 267 19 261 1.36e-53 175
MS.gene81067.t1 AT1G61520 43.627 204 96 7 90 276 14 215 5.87e-44 149
MS.gene81067.t1 AT3G54890 42.439 205 90 7 77 272 48 233 1.85e-41 143
MS.gene81067.t1 AT1G29930 36.653 251 129 9 39 267 9 251 5.88e-38 135
MS.gene81067.t1 AT2G34420 35.887 248 133 8 39 267 9 249 6.29e-38 134
MS.gene81067.t1 AT1G15820 37.500 224 111 5 48 248 28 245 8.80e-38 134
MS.gene81067.t1 AT2G05100 36.667 240 115 9 49 267 26 249 1.25e-37 134
MS.gene81067.t1 AT2G05070 38.785 214 97 8 72 267 52 249 1.50e-37 134
MS.gene81067.t1 AT1G29920 36.255 251 130 9 39 267 9 251 2.89e-37 133
MS.gene81067.t1 AT1G29910 36.255 251 130 9 39 267 9 251 2.89e-37 133
MS.gene81067.t1 AT2G34430 35.600 250 132 8 39 267 9 250 1.51e-36 131
MS.gene81067.t1 AT3G27690 37.850 214 99 8 72 267 53 250 1.57e-36 131
MS.gene81067.t1 AT3G27690 37.850 214 99 8 72 267 85 282 2.64e-36 131
MS.gene81067.t1 AT5G01530 32.432 259 97 5 73 277 54 288 7.92e-34 124
MS.gene81067.t1 AT5G54270 38.308 201 92 7 84 267 64 249 1.49e-33 123
MS.gene81067.t1 AT3G08940 32.432 259 97 5 73 277 51 285 7.41e-33 122
MS.gene81067.t1 AT1G76570 35.185 216 124 5 73 274 110 323 2.08e-32 122
MS.gene81067.t1 AT4G10340 39.706 204 108 7 72 267 65 261 1.08e-30 116
MS.gene81067.t1 AT3G54890 37.073 205 67 6 77 272 48 199 2.67e-29 110
MS.gene81067.t1 AT3G54890 39.286 168 75 6 77 236 48 196 8.19e-29 109
MS.gene81067.t1 AT2G05100 32.031 256 130 11 49 279 26 262 4.85e-28 110
MS.gene81067.t1 AT2G40100 31.818 242 86 6 73 260 55 271 1.32e-25 102
MS.gene81067.t1 AT3G54890 58.333 60 25 0 77 136 48 107 6.80e-18 79.3
MS.gene81067.t1 AT3G08940 31.707 123 35 2 73 152 51 167 1.86e-11 62.8

Find 87 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGATCTTTGTTAGGAATTC+TGG 0.125070 8.4:-71273045 None:intergenic
GGCAGTCTCCCAGGAGATTT+TGG 0.155478 8.4:+71272319 MS.gene81067:CDS
CATGGAGGAGGGGTGCTTCC+TGG 0.289446 8.4:-71272289 None:intergenic
TTGGTTTGATCCACTTGGTT+GGG 0.309908 8.4:+71273275 MS.gene81067:CDS
TTTGCTCACCTTGCTGATCC+TGG 0.353914 8.4:+71273429 MS.gene81067:CDS
GATCCACTTGGTTGGGGAAG+TGG 0.368672 8.4:+71273282 MS.gene81067:CDS
CGATCTTTGTTAGGAATTCT+GGG 0.372235 8.4:-71273044 None:intergenic
TCAAGATGCCGATCTTTGTT+AGG 0.378876 8.4:-71273053 None:intergenic
GGGAACCACAAAGGTCTATC+AGG 0.385925 8.4:-71272268 None:intergenic
ATGGAGGAGGGGTGCTTCCT+GGG 0.394126 8.4:-71272288 None:intergenic
ACATTCCATTTCAGACTCTC+TGG 0.395922 8.4:-71272964 None:intergenic
GGAAATTAAGAATGGGAGAT+TGG 0.401117 8.4:+71273338 MS.gene81067:CDS
ACCCCTCCTCCATGGCTAGA+TGG 0.401270 8.4:+71272298 MS.gene81067:CDS
AGCTTGTTGTTGGGAAAGAT+AGG 0.401853 8.4:-71273219 None:intergenic
CCTTCCTAGATCTTCTCACT+TGG 0.414334 8.4:-71274172 None:intergenic
ATTGGCTATGTTGGCTGTGA+TGG 0.416001 8.4:+71273356 MS.gene81067:CDS
TCGGTTGGGCCGAGGGTAGA+AGG 0.424965 8.4:+71273157 MS.gene81067:CDS
CTGAGCCTGATAGACCTTTG+TGG 0.428063 8.4:+71272263 MS.gene81067:CDS
TGTTGGCTGTGATGGGAGCT+TGG 0.430184 8.4:+71273364 MS.gene81067:CDS
TAGGATACCCTGGTGGACTT+TGG 0.431751 8.4:+71273256 MS.gene81067:CDS
CACTGCAGATGGGCAATGTT+GGG 0.431773 8.4:+71273003 MS.gene81067:CDS
AGTTCCTGTGAGCTTGTTGT+TGG 0.442103 8.4:-71273229 None:intergenic
GCATCTTGAACACACCTTCA+TGG 0.443608 8.4:+71273067 MS.gene81067:CDS
TGGTTCTCCTCAAAAGCTTA+AGG 0.445009 8.4:+71273302 MS.gene81067:CDS
TTTGGTTTGATCCACTTGGT+TGG 0.450965 8.4:+71273274 MS.gene81067:CDS
GTGGTAGATCTCACTCTAAC+TGG 0.456746 8.4:-71272223 None:intergenic
AGAACAAAGGAAATTAAGAA+TGG 0.462272 8.4:+71273330 MS.gene81067:CDS
CTGATCCAGAGAGTCTGAAA+TGG 0.467545 8.4:+71272959 MS.gene81067:CDS
TGGTTTGATCCACTTGGTTG+GGG 0.471868 8.4:+71273276 MS.gene81067:CDS
TGGGCAATGTTGGGAGCAGC+AGG 0.473188 8.4:+71273012 MS.gene81067:CDS
CAGAGCTTGTGCACTGCAGA+TGG 0.481288 8.4:+71272992 MS.gene81067:CDS
GATAGACCTTTGTGGTTCCC+AGG 0.481293 8.4:+71272271 MS.gene81067:CDS
AGAGACTTGCCTTGGAGAGA+TGG 0.488494 8.4:-71271764 None:intergenic
GCATGCAGTTCTCAGAAGAA+TGG 0.493993 8.4:+71272133 MS.gene81067:intron
TGAGCAAAGAGGTTATCAAT+AGG 0.495483 8.4:-71273414 None:intergenic
GAATGGGAGATTGGCTATGT+TGG 0.500964 8.4:+71273347 MS.gene81067:CDS
GGATCAAATCCAAAATCTCC+TGG 0.502658 8.4:-71272328 None:intergenic
GGACTTTGGTTTGATCCACT+TGG 0.512408 8.4:+71273270 MS.gene81067:CDS
GAACAAAGGAAATTAAGAAT+GGG 0.513870 8.4:+71273331 MS.gene81067:CDS
GTGTTTAGAGAGACTTGCCT+TGG 0.515872 8.4:-71271772 None:intergenic
ACACCTTCATGGTACACTGC+TGG 0.517592 8.4:+71273078 MS.gene81067:CDS
CAGCACATTTACACCGGCAC+TGG 0.520227 8.4:+71273390 MS.gene81067:CDS
GGGTCAGTGTTGACACAACC+TGG 0.522086 8.4:-71273198 None:intergenic
GTCAGCCCACCTTCTACCCT+CGG 0.523129 8.4:-71273166 None:intergenic
GTTCCTGTGAGCTTGTTGTT+GGG 0.523440 8.4:-71273228 None:intergenic
TGGGCTGACATCCTCAATCC+AGG 0.525106 8.4:+71273180 MS.gene81067:CDS
GGATCAAACCAAAGTCCACC+AGG 0.526848 8.4:-71273264 None:intergenic
TTGGCTATGTTGGCTGTGAT+GGG 0.528445 8.4:+71273357 MS.gene81067:CDS
CTTCCTAGATCTTCTCACTT+GGG 0.533125 8.4:-71274171 None:intergenic
AAGCTCACAGGAACTGATGT+AGG 0.535618 8.4:+71273237 MS.gene81067:CDS
TGGCTAGATGGCAGTCTCCC+AGG 0.536159 8.4:+71272310 MS.gene81067:CDS
GCCATCTAGCCATGGAGGAG+GGG 0.546298 8.4:-71272299 None:intergenic
CAGTGCCGGTGTAAATGTGC+TGG 0.548797 8.4:-71273389 None:intergenic
TTGGGCCGAGGGTAGAAGGT+GGG 0.548941 8.4:+71273161 MS.gene81067:CDS
TGCCATCTAGCCATGGAGGA+GGG 0.550191 8.4:-71272300 None:intergenic
AGAGATGGCAACAGCTGCAA+TGG 0.552836 8.4:-71271749 None:intergenic
CCAGAATTCCTAACAAAGAT+CGG 0.554190 8.4:+71273045 MS.gene81067:CDS
GCACTGCAGATGGGCAATGT+TGG 0.556685 8.4:+71273002 MS.gene81067:CDS
CTGCCATCTAGCCATGGAGG+AGG 0.559386 8.4:-71272301 None:intergenic
CAGGAAGCACCCCTCCTCCA+TGG 0.569573 8.4:+71272290 MS.gene81067:CDS
TCAGAAGAATGGATCACCCA+TGG 0.581832 8.4:+71272144 MS.gene81067:CDS
GTTGGGCCGAGGGTAGAAGG+TGG 0.588510 8.4:+71273160 MS.gene81067:CDS
CAGCTGTTGCCATCTCTCCA+AGG 0.589238 8.4:+71271755 MS.gene81067:CDS
TTTCCCAACAACAAGCTCAC+AGG 0.594755 8.4:+71273225 MS.gene81067:CDS
AGCTGCAGCACACACTGTTG+TGG 0.594939 8.4:-71272242 None:intergenic
AGAGCTTGTGCACTGCAGAT+GGG 0.595843 8.4:+71272993 MS.gene81067:CDS
GGGAGACTGCCATCTAGCCA+TGG 0.602036 8.4:-71272307 None:intergenic
GCTTGTTGTTGGGAAAGATA+GGG 0.609375 8.4:-71273218 None:intergenic
GTGCTTCCTGGGAACCACAA+AGG 0.617314 8.4:-71272277 None:intergenic
GATCAAATCCAAAATCTCCT+GGG 0.619038 8.4:-71272327 None:intergenic
TGGTTCCAGCACATTTACAC+CGG 0.623191 8.4:+71273384 MS.gene81067:CDS
TCTCCAGCAGTGTACCATGA+AGG 0.631666 8.4:-71273081 None:intergenic
TGTTGACACAACCTGGATTG+AGG 0.633547 8.4:-71273191 None:intergenic
GGAACTGATGTAGGATACCC+TGG 0.633921 8.4:+71273246 MS.gene81067:CDS
GTTATCAATAGGACCAGTGC+CGG 0.634519 8.4:-71273403 None:intergenic
CAGAAGAATGGATCACCCAT+GGG 0.634694 8.4:+71272145 MS.gene81067:CDS
GATCAGCAAGGTGAGCAAAG+AGG 0.646872 8.4:-71273425 None:intergenic
GCTTAAGGAGTTGAGAACAA+AGG 0.650788 8.4:+71273317 MS.gene81067:CDS
GCGAAAATAGTAGCATGACC+AGG 0.658859 8.4:-71273447 None:intergenic
GAACCACTTCCCCAACCAAG+TGG 0.665438 8.4:-71273285 None:intergenic
TTAAGCTTACAAAGTCCAAG+AGG 0.666846 8.4:-71272349 None:intergenic
TAGCATGACCAGGATCAGCA+AGG 0.674432 8.4:-71273437 None:intergenic
AGACTGCCATCTAGCCATGG+AGG 0.705683 8.4:-71272304 None:intergenic
CTCAACTATGAAGAGTGTGG+TGG 0.729773 8.4:-71273124 None:intergenic
GATCAAACCAAAGTCCACCA+GGG 0.731678 8.4:-71273263 None:intergenic
GAGCTCAACTATGAAGAGTG+TGG 0.734291 8.4:-71273127 None:intergenic
ACTGATGTAGGATACCCTGG+TGG 0.765030 8.4:+71273249 MS.gene81067:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAATAATCTTATAAAA+AGG - chr8.4:71272634-71272653 None:intergenic 10.0%
!!! GTTTGACAAATATTTTTAAA+TGG - chr8.4:71271945-71271964 None:intergenic 15.0%
!! AATAGTAATTTAGTACAGTT+CGG - chr8.4:71273714-71273733 None:intergenic 20.0%
!! ACATGTAATAAATACTAAGA+TGG + chr8.4:71272728-71272747 MS.gene81067:intron 20.0%
!! ATATAGTAACCAATTTAACT+AGG - chr8.4:71271969-71271988 None:intergenic 20.0%
!! CTTGATCAAATATTCAAATT+TGG - chr8.4:71272553-71272572 None:intergenic 20.0%
!! TATAGTAACCAATTTAACTA+GGG - chr8.4:71271968-71271987 None:intergenic 20.0%
!! TCAAGAAAAATTAAGAAAGT+TGG - chr8.4:71272830-71272849 None:intergenic 20.0%
!!! ATTTTTTCAAGGTGTTTTAA+CGG + chr8.4:71273850-71273869 MS.gene81067:intron 20.0%
!!! CAATTTTTTTGTTACTGAAT+CGG + chr8.4:71272380-71272399 MS.gene81067:intron 20.0%
! AACAATATGCAATCTAAACT+AGG - chr8.4:71273493-71273512 None:intergenic 25.0%
! ACTCAAGAGGATTTATATTT+AGG - chr8.4:71272599-71272618 None:intergenic 25.0%
! AGAACAAAGGAAATTAAGAA+TGG + chr8.4:71273330-71273349 MS.gene81067:CDS 25.0%
! ATAGTAACCAATTTAACTAG+GGG - chr8.4:71271967-71271986 None:intergenic 25.0%
! CAACACTTTGATGAATATTA+TGG - chr8.4:71272921-71272940 None:intergenic 25.0%
! CATAATATTCATCAAAGTGT+TGG + chr8.4:71272919-71272938 MS.gene81067:intron 25.0%
! CTCAAGAGGATTTATATTTA+GGG - chr8.4:71272598-71272617 None:intergenic 25.0%
! GAACAAAGGAAATTAAGAAT+GGG + chr8.4:71273331-71273350 MS.gene81067:CDS 25.0%
! GATGTAGCATATACTAATTA+TGG - chr8.4:71272698-71272717 None:intergenic 25.0%
! TAAGAAGAAGAACAAACTAT+AGG - chr8.4:71274060-71274079 None:intergenic 25.0%
! TTTAGATTGCATATTGTTCT+TGG + chr8.4:71273495-71273514 MS.gene81067:intron 25.0%
!! GGATTTTCTACATTAGTAAA+AGG - chr8.4:71272532-71272551 None:intergenic 25.0%
!! TAAACCAATTTTCTCTTCTA+AGG + chr8.4:71272756-71272775 MS.gene81067:intron 25.0%
!! TTTTCTATTCCTGATATTAC+AGG + chr8.4:71274140-71274159 MS.gene81067:intron 25.0%
!! TTTTCTTGATTTTGTCAACA+TGG + chr8.4:71272841-71272860 MS.gene81067:intron 25.0%
!!! TTTTTTTAAACAGTCCTAAC+TGG + chr8.4:71273893-71273912 MS.gene81067:intron 25.0%
AATATGCAATCTAAACTAGG+AGG - chr8.4:71273490-71273509 None:intergenic 30.0%
ACCAAACCATTATAGTAGTT+TGG - chr8.4:71273602-71273621 None:intergenic 30.0%
ACTAAAATGCATCAAACACT+TGG - chr8.4:71273921-71273940 None:intergenic 30.0%
AGAGGATTTATATTTAGGGA+CGG - chr8.4:71272594-71272613 None:intergenic 30.0%
AGATAATGAAAGTCTGATGA+AGG - chr8.4:71273996-71274015 None:intergenic 30.0%
ATGAACTATCTGTCACAATT+CGG - chr8.4:71273773-71273792 None:intergenic 30.0%
ATTAGACGAGTTGTATTAGA+CGG + chr8.4:71272477-71272496 MS.gene81067:intron 30.0%
ATTGCATATTGTTCTTGGTT+TGG + chr8.4:71273500-71273519 MS.gene81067:intron 30.0%
GTTTAACCAAACTGTTTGAA+TGG - chr8.4:71273549-71273568 None:intergenic 30.0%
TACTCCTTAGAAGAGAAAAT+TGG - chr8.4:71272763-71272782 None:intergenic 30.0%
TGAATCGGATTGATTACAAT+CGG + chr8.4:71272395-71272414 MS.gene81067:intron 30.0%
TTGCATATTGTTCTTGGTTT+GGG + chr8.4:71273501-71273520 MS.gene81067:intron 30.0%
! ATAGTTGAGCTCATTTTCAT+CGG + chr8.4:71273138-71273157 MS.gene81067:CDS 30.0%
! TTTTCTTGGAAGGAAATTGA+AGG + chr8.4:71272180-71272199 MS.gene81067:CDS 30.0%
!!! GTCACAGTTTGATTTTTTCA+AGG + chr8.4:71273839-71273858 MS.gene81067:intron 30.0%
!!! TACAGTTTGGTTTTCTATTG+AGG - chr8.4:71273661-71273680 None:intergenic 30.0%
ACAACTCGTCTAATCAAGAT+CGG - chr8.4:71272471-71272490 None:intergenic 35.0%
ACTGAACCATTCAAACAGTT+TGG + chr8.4:71273540-71273559 MS.gene81067:intron 35.0%
ACTGTTTGAATGGTTCAGTT+TGG - chr8.4:71273539-71273558 None:intergenic 35.0%
CCAGAATTCCTAACAAAGAT+CGG + chr8.4:71273045-71273064 MS.gene81067:CDS 35.0%
CGATCTTTGTTAGGAATTCT+GGG - chr8.4:71273047-71273066 None:intergenic 35.0%
CGGTTCACAAAGAATCAATT+TGG - chr8.4:71273694-71273713 None:intergenic 35.0%
CTTTACGGCGAATTTATGTT+TGG - chr8.4:71273748-71273767 None:intergenic 35.0%
GAGCAATGAAAAAACTCAAG+AGG - chr8.4:71272612-71272631 None:intergenic 35.0%
GATCAAATCCAAAATCTCCT+GGG - chr8.4:71272330-71272349 None:intergenic 35.0%
GCCAAACTACTATAATGGTT+TGG + chr8.4:71273598-71273617 MS.gene81067:intron 35.0%
GGAAATTAAGAATGGGAGAT+TGG + chr8.4:71273338-71273357 MS.gene81067:CDS 35.0%
GGTCATGTATTTAGAGACAA+CGG + chr8.4:71272862-71272881 MS.gene81067:intron 35.0%
TGAGCAAAGAGGTTATCAAT+AGG - chr8.4:71273417-71273436 None:intergenic 35.0%
TGTCAAACCCCTAGTTAAAT+TGG + chr8.4:71271957-71271976 MS.gene81067:intron 35.0%
TGTCACAATTCGGTTCTTTA+CGG - chr8.4:71273763-71273782 None:intergenic 35.0%
TTAAGCTTACAAAGTCCAAG+AGG - chr8.4:71272352-71272371 None:intergenic 35.0%
! GATTTTGGATTTGATCCTCT+TGG + chr8.4:71272334-71272353 MS.gene81067:CDS 35.0%
! GTTTTCAAACAGAACCAGTT+CGG - chr8.4:71273814-71273833 None:intergenic 35.0%
! GTTTTCTATTGAGGTAGTTC+AGG - chr8.4:71273652-71273671 None:intergenic 35.0%
! TGGTTTGAAGAAGTACAGTT+TGG - chr8.4:71273674-71273693 None:intergenic 35.0%
!! TATTGTTCTTGGTTTGGGTT+AGG + chr8.4:71273506-71273525 MS.gene81067:intron 35.0%
!! TCTAAACTAGGAGGTATTGA+TGG - chr8.4:71273481-71273500 None:intergenic 35.0%
!!! GTGGTCTTATTTTCCTTGTT+GGG + chr8.4:71272884-71272903 MS.gene81067:intron 35.0%
!!! TTCAAGGTGTTTTAACGGTT+TGG + chr8.4:71273855-71273874 MS.gene81067:intron 35.0%
ACATTCCATTTCAGACTCTC+TGG - chr8.4:71272967-71272986 None:intergenic 40.0%
CATGTATTTAGAGACAACGG+TGG + chr8.4:71272865-71272884 MS.gene81067:intron 40.0%
CCGATCTTTGTTAGGAATTC+TGG - chr8.4:71273048-71273067 None:intergenic 40.0%
CCTGAGCCAAACTACTATAA+TGG + chr8.4:71273593-71273612 MS.gene81067:intron 40.0%
CTATTGAGGTAGTTCAGGAT+CGG - chr8.4:71273647-71273666 None:intergenic 40.0%
GAGTGAAAGCCTGTAATATC+AGG - chr8.4:71274152-71274171 None:intergenic 40.0%
GCTTAAGGAGTTGAGAACAA+AGG + chr8.4:71273317-71273336 MS.gene81067:CDS 40.0%
GGATCAAATCCAAAATCTCC+TGG - chr8.4:71272331-71272350 None:intergenic 40.0%
TCAAACACTTGGTTCCAGTT+AGG - chr8.4:71273910-71273929 None:intergenic 40.0%
TCAAGATGCCGATCTTTGTT+AGG - chr8.4:71273056-71273075 None:intergenic 40.0%
TGAATCAAGCTAAACCGAAC+TGG + chr8.4:71273797-71273816 MS.gene81067:intron 40.0%
TGGTTCTCCTCAAAAGCTTA+AGG + chr8.4:71273302-71273321 MS.gene81067:CDS 40.0%
! CCATTATAGTAGTTTGGCTC+AGG - chr8.4:71273596-71273615 None:intergenic 40.0%
! CCTCAAAAGCTTTTCTTGGA+AGG + chr8.4:71272170-71272189 MS.gene81067:CDS 40.0%
! CCTTCCAAGAAAAGCTTTTG+AGG - chr8.4:71272173-71272192 None:intergenic 40.0%
! CTCAACTCCTTAAGCTTTTG+AGG - chr8.4:71273312-71273331 None:intergenic 40.0%
! GGAACCTCAAAAGCTTTTCT+TGG + chr8.4:71272166-71272185 MS.gene81067:CDS 40.0%
! TTGAGCTCATTTTCATCGGT+TGG + chr8.4:71273142-71273161 MS.gene81067:CDS 40.0%
! TTGGTTTGATCCACTTGGTT+GGG + chr8.4:71273275-71273294 MS.gene81067:CDS 40.0%
!! AGCTTGTTGTTGGGAAAGAT+AGG - chr8.4:71273222-71273241 None:intergenic 40.0%
!! GCTTGTTGTTGGGAAAGATA+GGG - chr8.4:71273221-71273240 None:intergenic 40.0%
!! TGAGCTCATTTTCATCGGTT+GGG + chr8.4:71273143-71273162 MS.gene81067:CDS 40.0%
!! TTTGGTTTGATCCACTTGGT+TGG + chr8.4:71273274-71273293 MS.gene81067:CDS 40.0%
!!! AAAAGCTTTTGAGGTTCCCA+TGG - chr8.4:71272164-71272183 None:intergenic 40.0%
!!! AAAGCTTTTGAGGTTCCCAT+GGG - chr8.4:71272163-71272182 None:intergenic 40.0%
!!! GGTGGTCTTATTTTCCTTGT+TGG + chr8.4:71272883-71272902 MS.gene81067:intron 40.0%
AAGCTCACAGGAACTGATGT+AGG + chr8.4:71273237-71273256 MS.gene81067:CDS 45.0%
CAGAAGAATGGATCACCCAT+GGG + chr8.4:71272145-71272164 MS.gene81067:CDS 45.0%
CAGTGTCTGACTCTAGTGAT+AGG + chr8.4:71271851-71271870 MS.gene81067:intron 45.0%
CTGATCCAGAGAGTCTGAAA+TGG + chr8.4:71272959-71272978 MS.gene81067:CDS 45.0%
GAGCTCAACTATGAAGAGTG+TGG - chr8.4:71273130-71273149 None:intergenic 45.0%
GATCAAACCAAAGTCCACCA+GGG - chr8.4:71273266-71273285 None:intergenic 45.0%
GCATCTTGAACACACCTTCA+TGG + chr8.4:71273067-71273086 MS.gene81067:CDS 45.0%
GCATGCAGTTCTCAGAAGAA+TGG + chr8.4:71272133-71272152 MS.gene81067:intron 45.0%
GCGAAAATAGTAGCATGACC+AGG - chr8.4:71273450-71273469 None:intergenic 45.0%
GGTCAGTTGTATTCCCAACA+AGG - chr8.4:71272900-71272919 None:intergenic 45.0%
GTGGTAGATCTCACTCTAAC+TGG - chr8.4:71272226-71272245 None:intergenic 45.0%
GTGTTTAGAGAGACTTGCCT+TGG - chr8.4:71271775-71271794 None:intergenic 45.0%
GTTATCAATAGGACCAGTGC+CGG - chr8.4:71273406-71273425 None:intergenic 45.0%
TCAGAAGAATGGATCACCCA+TGG + chr8.4:71272144-71272163 MS.gene81067:CDS 45.0%
TGGTTCCAGCACATTTACAC+CGG + chr8.4:71273384-71273403 MS.gene81067:CDS 45.0%
TGGTTTGATCCACTTGGTTG+GGG + chr8.4:71273276-71273295 MS.gene81067:CDS 45.0%
TGTTGACACAACCTGGATTG+AGG - chr8.4:71273194-71273213 None:intergenic 45.0%
TTTCCCAACAACAAGCTCAC+AGG + chr8.4:71273225-71273244 MS.gene81067:CDS 45.0%
! ATTGGCTATGTTGGCTGTGA+TGG + chr8.4:71273356-71273375 MS.gene81067:CDS 45.0%
! CTCAACTATGAAGAGTGTGG+TGG - chr8.4:71273127-71273146 None:intergenic 45.0%
! GAATGGGAGATTGGCTATGT+TGG + chr8.4:71273347-71273366 MS.gene81067:CDS 45.0%
! GGTTTGGTTCACTCGTTATG+TGG + chr8.4:71273614-71273633 MS.gene81067:intron 45.0%
! TTGGCTATGTTGGCTGTGAT+GGG + chr8.4:71273357-71273376 MS.gene81067:CDS 45.0%
!! AGTTCCTGTGAGCTTGTTGT+TGG - chr8.4:71273232-71273251 None:intergenic 45.0%
!! GGACTTTGGTTTGATCCACT+TGG + chr8.4:71273270-71273289 MS.gene81067:CDS 45.0%
!! GTTCCTGTGAGCTTGTTGTT+GGG - chr8.4:71273231-71273250 None:intergenic 45.0%
ACACCTTCATGGTACACTGC+TGG + chr8.4:71273078-71273097 MS.gene81067:CDS 50.0%
ACTGATGTAGGATACCCTGG+TGG + chr8.4:71273249-71273268 MS.gene81067:CDS 50.0%
AGAGACTTGCCTTGGAGAGA+TGG - chr8.4:71271767-71271786 None:intergenic 50.0%
AGAGATGGCAACAGCTGCAA+TGG - chr8.4:71271752-71271771 None:intergenic 50.0%
AGAGCTTGTGCACTGCAGAT+GGG + chr8.4:71272993-71273012 MS.gene81067:CDS 50.0%
CACTGCAGATGGGCAATGTT+GGG + chr8.4:71273003-71273022 MS.gene81067:CDS 50.0%
CTGAGCCTGATAGACCTTTG+TGG + chr8.4:71272263-71272282 MS.gene81067:CDS 50.0%
GATAGACCTTTGTGGTTCCC+AGG + chr8.4:71272271-71272290 MS.gene81067:CDS 50.0%
GATCAGCAAGGTGAGCAAAG+AGG - chr8.4:71273428-71273447 None:intergenic 50.0%
GGAACTGATGTAGGATACCC+TGG + chr8.4:71273246-71273265 MS.gene81067:CDS 50.0%
GGATCAAACCAAAGTCCACC+AGG - chr8.4:71273267-71273286 None:intergenic 50.0%
GGGAACCACAAAGGTCTATC+AGG - chr8.4:71272271-71272290 None:intergenic 50.0%
TAGCATGACCAGGATCAGCA+AGG - chr8.4:71273440-71273459 None:intergenic 50.0%
TCTCCAGCAGTGTACCATGA+AGG - chr8.4:71273084-71273103 None:intergenic 50.0%
TTGCGCAACTGCGTCAACTT+TGG + chr8.4:71272506-71272525 MS.gene81067:intron 50.0%
TTTGCTCACCTTGCTGATCC+TGG + chr8.4:71273429-71273448 MS.gene81067:CDS 50.0%
!! ATTTTCATCGGTTGGGCCGA+GGG + chr8.4:71273150-71273169 MS.gene81067:CDS 50.0%
!! TAGGATACCCTGGTGGACTT+TGG + chr8.4:71273256-71273275 MS.gene81067:CDS 50.0%
AGACTGCCATCTAGCCATGG+AGG - chr8.4:71272307-71272326 None:intergenic 55.0%
AGCTGCAGCACACACTGTTG+TGG - chr8.4:71272245-71272264 None:intergenic 55.0%
CAGAGCTTGTGCACTGCAGA+TGG + chr8.4:71272992-71273011 MS.gene81067:CDS 55.0%
CAGCACATTTACACCGGCAC+TGG + chr8.4:71273390-71273409 MS.gene81067:CDS 55.0%
CAGCTGTTGCCATCTCTCCA+AGG + chr8.4:71271755-71271774 MS.gene81067:CDS 55.0%
GAACCACTTCCCCAACCAAG+TGG - chr8.4:71273288-71273307 None:intergenic 55.0%
GATCCACTTGGTTGGGGAAG+TGG + chr8.4:71273282-71273301 MS.gene81067:CDS 55.0%
GCACTGCAGATGGGCAATGT+TGG + chr8.4:71273002-71273021 MS.gene81067:CDS 55.0%
GTGCTTCCTGGGAACCACAA+AGG - chr8.4:71272280-71272299 None:intergenic 55.0%
TGCCATCTAGCCATGGAGGA+GGG - chr8.4:71272303-71272322 None:intergenic 55.0%
TGGGCTGACATCCTCAATCC+AGG + chr8.4:71273180-71273199 MS.gene81067:CDS 55.0%
! GGCAGTCTCCCAGGAGATTT+TGG + chr8.4:71272319-71272338 MS.gene81067:CDS 55.0%
! TGTTGGCTGTGATGGGAGCT+TGG + chr8.4:71273364-71273383 MS.gene81067:CDS 55.0%
!! CAGTGCCGGTGTAAATGTGC+TGG - chr8.4:71273392-71273411 None:intergenic 55.0%
!! CATTTTCATCGGTTGGGCCG+AGG + chr8.4:71273149-71273168 MS.gene81067:CDS 55.0%
!! GGGTCAGTGTTGACACAACC+TGG - chr8.4:71273201-71273220 None:intergenic 55.0%
ACCCCTCCTCCATGGCTAGA+TGG + chr8.4:71272298-71272317 MS.gene81067:CDS 60.0%
CTGCCATCTAGCCATGGAGG+AGG - chr8.4:71272304-71272323 None:intergenic 60.0%
GCCATCTAGCCATGGAGGAG+GGG - chr8.4:71272302-71272321 None:intergenic 60.0%
GGGAGACTGCCATCTAGCCA+TGG - chr8.4:71272310-71272329 None:intergenic 60.0%
GTCAGCCCACCTTCTACCCT+CGG - chr8.4:71273169-71273188 None:intergenic 60.0%
TGGCTAGATGGCAGTCTCCC+AGG + chr8.4:71272310-71272329 MS.gene81067:CDS 60.0%
TGGGCAATGTTGGGAGCAGC+AGG + chr8.4:71273012-71273031 MS.gene81067:CDS 60.0%
TTGGGCCGAGGGTAGAAGGT+GGG + chr8.4:71273161-71273180 MS.gene81067:CDS 60.0%
!! ATGGAGGAGGGGTGCTTCCT+GGG - chr8.4:71272291-71272310 None:intergenic 60.0%
GTTGGGCCGAGGGTAGAAGG+TGG + chr8.4:71273160-71273179 MS.gene81067:CDS 65.0%
TCGGTTGGGCCGAGGGTAGA+AGG + chr8.4:71273157-71273176 MS.gene81067:CDS 65.0%
!! CAGGAAGCACCCCTCCTCCA+TGG + chr8.4:71272290-71272309 MS.gene81067:CDS 65.0%
!! CATGGAGGAGGGGTGCTTCC+TGG - chr8.4:71272292-71272311 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 71271724 71274179 71271724 ID=MS.gene81067
chr8.4 mRNA 71271724 71274179 71271724 ID=MS.gene81067.t1;Parent=MS.gene81067
chr8.4 exon 71271724 71271809 71271724 ID=MS.gene81067.t1.exon1;Parent=MS.gene81067.t1
chr8.4 CDS 71271724 71271809 71271724 ID=cds.MS.gene81067.t1;Parent=MS.gene81067.t1
chr8.4 exon 71272141 71272361 71272141 ID=MS.gene81067.t1.exon2;Parent=MS.gene81067.t1
chr8.4 CDS 71272141 71272361 71272141 ID=cds.MS.gene81067.t1;Parent=MS.gene81067.t1
chr8.4 exon 71272956 71273470 71272956 ID=MS.gene81067.t1.exon3;Parent=MS.gene81067.t1
chr8.4 CDS 71272956 71273470 71272956 ID=cds.MS.gene81067.t1;Parent=MS.gene81067.t1
chr8.4 exon 71274162 71274179 71274162 ID=MS.gene81067.t1.exon4;Parent=MS.gene81067.t1
chr8.4 CDS 71274162 71274179 71274162 ID=cds.MS.gene81067.t1;Parent=MS.gene81067.t1
Gene Sequence

>MS.gene81067

ATGGCTTCTGCTTGTGCTTCTTCTGCCATTGCAGCTGTTGCCATCTCTCCAAGGCAAGTCTCTCTAAACACTAATTACTTGCACATGTTTTTTACACACTACTAAAAATTTAGTGATCAAAATATTTCAGTGTCTGACTCTAGTGATAGGTTTATCAACTGATTTTTAAATCGATCTCTAAGTCGATTATTAAATGACTTTGTGATCGACTTAGAGATCCATTTAAAAATATTTGTCAAACCCCTAGTTAAATTGGTTACTATATCACATATCACAGTTTTTTGCAGTGACATATGTAGCAACAATGTGAACATTATATGAAACATTGCATGCATTAACAATTCATTGAAATTCAAGCTTGTAGTAATACTAAACTAAGCATAAAAAATATATATGTATATGTGATATTGCATGCAGTTCTCAGAAGAATGGATCACCCATGGGAACCTCAAAAGCTTTTCTTGGAAGGAAATTGAAGGTGAACAGCAACACTGCAGCACCAGTTAGAGTGAGATCTACCACAACAGTGTGTGCTGCAGCTGAGCCTGATAGACCTTTGTGGTTCCCAGGAAGCACCCCTCCTCCATGGCTAGATGGCAGTCTCCCAGGAGATTTTGGATTTGATCCTCTTGGACTTTGTAAGCTTAATCAGAACTCAATTTTTTTGTTACTGAATCGGATTGATTACAATCGGATTGAAAATAATCTACTATGCAGTTGTTGCACTTGCATAGTCTGACTTGTCCGATCTTGATTAGACGAGTTGTATTAGACGGTTCATGTTGCGCAACTGCGTCAACTTTGGCCTTTTACTAATGTAGAAAATCCAAATTTGAATATTTGATCAAGTAGTACACATTACTAACTCCGTCCCTAAATATAAATCCTCTTGAGTTTTTTCATTGCTCCTTTTTATAAGATTATTTTCTAAATTTTAACTGTATCAGTTATTTTTTACATACATACTCGTACCATAATTAGTATATGCTACATCTTTTTATGCAACATGTAATAAATACTAAGATGGAAACATAAACCAATTTTCTCTTCTAAGGAGTAATCTTGTAAATCAATAACAACTGTTAATAAGTTTAATATTACTACCAACTTTCTTAATTTTTCTTGATTTTGTCAACATGGTCATGTATTTAGAGACAACGGTGGTCTTATTTTCCTTGTTGGGAATACAACTGACCATAATATTCATCAAAGTGTTGGTTGTGATTCAACAGCATCTGATCCAGAGAGTCTGAAATGGAATGTTCAAGCAGAGCTTGTGCACTGCAGATGGGCAATGTTGGGAGCAGCAGGAATTTTCATCCCAGAATTCCTAACAAAGATCGGCATCTTGAACACACCTTCATGGTACACTGCTGGAGAGCAAGAGTATTTCACAGACACCACCACACTCTTCATAGTTGAGCTCATTTTCATCGGTTGGGCCGAGGGTAGAAGGTGGGCTGACATCCTCAATCCAGGTTGTGTCAACACTGACCCTATCTTTCCCAACAACAAGCTCACAGGAACTGATGTAGGATACCCTGGTGGACTTTGGTTTGATCCACTTGGTTGGGGAAGTGGTTCTCCTCAAAAGCTTAAGGAGTTGAGAACAAAGGAAATTAAGAATGGGAGATTGGCTATGTTGGCTGTGATGGGAGCTTGGTTCCAGCACATTTACACCGGCACTGGTCCTATTGATAACCTCTTTGCTCACCTTGCTGATCCTGGTCATGCTACTATTTTCGCTGTAAGTTCCATCAATACCTCCTAGTTTAGATTGCATATTGTTCTTGGTTTGGGTTAGGAAGAAAACCAAACTGAACCATTCAAACAGTTTGGTTAAACTGAACTAAATCGCTAATTGTTTGTCCTGAGCCAAACTACTATAATGGTTTGGTTCACTCGTTATGTGGTTCTGAACCGATCCTGAACTACCTCAATAGAAAACCAAACTGTACTTCTTCAAACCAAATTGATTCTTTGTGAACCGAACTGTACTAAATTACTATTATTAACTTTAACCAAACATAAATTCGCCGTAAAGAACCGAATTGTGACAGATAGTTCATGAACTGAATCAAGCTAAACCGAACTGGTTCTGTTTGAAAACTGTAAGTCACAGTTTGATTTTTTCAAGGTGTTTTAACGGTTTGGTTCAGTTTTTGTTTGTTTTTTTAAACAGTCCTAACTGGAACCAAGTGTTTGATGCATTTTAGTTAAGATCAAATCGTTTGACGAATACTCGAGTTTGATTTCACACTAAAACAGTCCTTCATCAGACTTTCATTATCTTTCGACTGAACTCTAGACTTTACTACAAAGACAAAAGAAATCCTATAGTTTGTTCTTCTTCTTAGTTTTATAACTTTGAACATATAAGATATTGTTATTATTTTAGAATTTTTTTGAGCTGATTTTTTCTATTCCTGATATTACAGGCTTTCACTCCCAAGTGA

Protein sequence

>MS.gene81067.t1

MASACASSAIAAVAISPRQVSLNTNYLHISQKNGSPMGTSKAFLGRKLKVNSNTAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK