Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013579.t1 | XP_003602268.1 | 95.9 | 171 | 6 | 1 | 1 | 171 | 1 | 170 | 6.10E-87 | 330.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013579.t1 | G7J7F8 | 95.9 | 171 | 6 | 1 | 1 | 171 | 1 | 170 | 4.4e-87 | 330.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013579 | MS.gene059160 | PPI |
| MS.gene013579 | MS.gene057116 | PPI |
| MS.gene013579 | MS.gene057114 | PPI |
| MS.gene013579 | MS.gene06909 | PPI |
| MS.gene013579 | MS.gene059161 | PPI |
| MS.gene013579 | MS.gene54540 | PPI |
| MS.gene059162 | MS.gene013579 | PPI |
| MS.gene013579 | MS.gene06696 | PPI |
| MS.gene013579 | MS.gene06907 | PPI |
| MS.gene013579 | MS.gene021450 | PPI |
| MS.gene057114 | MS.gene013579 | PPI |
| MS.gene059160 | MS.gene013579 | PPI |
| MS.gene013579 | MS.gene059162 | PPI |
| MS.gene013579 | MS.gene31640 | PPI |
| MS.gene057116 | MS.gene013579 | PPI |
| MS.gene06696 | MS.gene013579 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013579.t1 | MTR_3g091680 | 95.906 | 171 | 6 | 1 | 1 | 171 | 1 | 170 | 3.03e-118 | 331 |
| MS.gene013579.t1 | MTR_1g007905 | 58.286 | 175 | 59 | 5 | 1 | 162 | 36 | 209 | 4.90e-57 | 178 |
| MS.gene013579.t1 | MTR_7g117695 | 31.551 | 187 | 83 | 6 | 9 | 158 | 44 | 222 | 1.35e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013579.t1 | AT5G53030 | 37.000 | 200 | 80 | 8 | 5 | 159 | 37 | 235 | 2.88e-25 | 97.8 |
| MS.gene013579.t1 | AT4G27810 | 38.690 | 168 | 76 | 5 | 5 | 159 | 33 | 186 | 5.89e-22 | 88.2 |
| MS.gene013579.t1 | AT5G53030 | 36.216 | 185 | 76 | 7 | 5 | 148 | 37 | 220 | 9.10e-20 | 82.8 |
Find 61 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTGGAATTCCAATTT+TGG | 0.127410 | 3.4:+83847797 | MS.gene013579:CDS |
| GGAAAGAAACACAGAGAAAA+TGG | 0.227357 | 3.4:+83850566 | MS.gene013579:CDS |
| TCTAGCAGGTGGAGTGGTTT+CGG | 0.243771 | 3.4:+83847821 | MS.gene013579:CDS |
| CTAGCAGGTGGAGTGGTTTC+GGG | 0.280489 | 3.4:+83847822 | MS.gene013579:CDS |
| CCACCTGCTAGACCCAAAAT+TGG | 0.283838 | 3.4:-83847810 | None:intergenic |
| GTAAAATCTAAAGGATTAAA+TGG | 0.311136 | 3.4:-83850605 | None:intergenic |
| TCACCTACAACTGTGTTAGA+TGG | 0.315146 | 3.4:+83847722 | MS.gene013579:CDS |
| TGGTAGTGCCTAGGCTTTCC+TGG | 0.315648 | 3.4:-83847608 | None:intergenic |
| GGATTAAATGGTGTCGGTTA+TGG | 0.318250 | 3.4:-83850593 | None:intergenic |
| ATAGAACTCCAAGGGAAAAC+TGG | 0.328757 | 3.4:+83847783 | MS.gene013579:CDS |
| CTTGAAAGGAATTGAAATCA+TGG | 0.366715 | 3.4:-83847573 | None:intergenic |
| AAAGGGAAAATCACATTTGT+GGG | 0.419238 | 3.4:+83847940 | MS.gene013579:CDS |
| CAACCTTGGAGCTGCCTCCT+AGG | 0.435981 | 3.4:+83847663 | MS.gene013579:CDS |
| CAAAGGGAAAATCACATTTG+TGG | 0.438574 | 3.4:+83847939 | MS.gene013579:CDS |
| TAGATGGGCCTTACGTGGGC+CGG | 0.448015 | 3.4:+83847738 | MS.gene013579:CDS |
| ATTAATAAGCAAGGAGATGA+GGG | 0.448276 | 3.4:+83847848 | MS.gene013579:CDS |
| GTTTCTTTCCTGCGTCTCCA+AGG | 0.455727 | 3.4:-83850553 | None:intergenic |
| TGAAGGAACATCAACCTTGT+TGG | 0.458738 | 3.4:-83847702 | None:intergenic |
| CTGTATTGTCGAGCTCTGAT+TGG | 0.465440 | 3.4:-83847634 | None:intergenic |
| AGATGGGCCTTACGTGGGCC+GGG | 0.475085 | 3.4:+83847739 | MS.gene013579:CDS |
| GCTTCAAGCAAGTGGTCCCT+TGG | 0.475947 | 3.4:+83850536 | MS.gene013579:CDS |
| TTTCTTTCCTGCGTCTCCAA+GGG | 0.483332 | 3.4:-83850552 | None:intergenic |
| GGAATTGAAATCATGGTTTG+AGG | 0.484375 | 3.4:-83847566 | None:intergenic |
| GAAAGAAACACAGAGAAAAT+GGG | 0.492618 | 3.4:+83850567 | MS.gene013579:CDS |
| GATTAATAAGCAAGGAGATG+AGG | 0.496792 | 3.4:+83847847 | MS.gene013579:CDS |
| GGAGGAAGTCCCATTTCAAA+GGG | 0.501251 | 3.4:+83847923 | MS.gene013579:CDS |
| TTCAAGTGGGAGGAAGCACC+AGG | 0.509624 | 3.4:+83847590 | MS.gene013579:CDS |
| AAGATGTCACGGGCTGCTAA+AGG | 0.520498 | 3.4:+83847902 | MS.gene013579:CDS |
| GGCCCATCTAACACAGTTGT+AGG | 0.520900 | 3.4:-83847725 | None:intergenic |
| GACATGGCCCGGCCCACGTA+AGG | 0.522178 | 3.4:-83847746 | None:intergenic |
| GATTGGGTGTGGTAGTGCCT+AGG | 0.526775 | 3.4:-83847617 | None:intergenic |
| AGGAGGAAGTCCCATTTCAA+AGG | 0.530152 | 3.4:+83847922 | MS.gene013579:CDS |
| TGTATTGTCGAGCTCTGATT+GGG | 0.531093 | 3.4:-83847633 | None:intergenic |
| CACCTACAACTGTGTTAGAT+GGG | 0.532506 | 3.4:+83847723 | MS.gene013579:CDS |
| AAGAAGTGAAGGACATGGCC+CGG | 0.535442 | 3.4:-83847757 | None:intergenic |
| GGTGCTTCCTCCCACTTGAA+AGG | 0.541875 | 3.4:-83847587 | None:intergenic |
| TGATTTCAATTCCTTTCAAG+TGG | 0.550003 | 3.4:+83847576 | MS.gene013579:CDS |
| TTCAATTCCTTTCAAGTGGG+AGG | 0.551211 | 3.4:+83847580 | MS.gene013579:CDS |
| TTTGGGTCTAGCAGGTGGAG+TGG | 0.556268 | 3.4:+83847815 | MS.gene013579:CDS |
| TGTGTTAGATGGGCCTTACG+TGG | 0.559160 | 3.4:+83847733 | MS.gene013579:CDS |
| TTATGACAGCTTCAAGCAAG+TGG | 0.561111 | 3.4:+83850528 | MS.gene013579:CDS |
| AAGTGGTCCCTTGGAGACGC+AGG | 0.575329 | 3.4:+83850545 | MS.gene013579:CDS |
| TCAACAACCAATAATGTCAT+CGG | 0.578794 | 3.4:+83847526 | None:intergenic |
| TCTAAAGGATTAAATGGTGT+CGG | 0.581278 | 3.4:-83850599 | None:intergenic |
| CAATACAGTTAGAACAACCT+TGG | 0.583296 | 3.4:+83847649 | MS.gene013579:CDS |
| TTCGGGAAGATTAATAAGCA+AGG | 0.583500 | 3.4:+83847839 | MS.gene013579:CDS |
| AGAATAAGGTGAAGATGTCA+CGG | 0.584256 | 3.4:+83847891 | MS.gene013579:CDS |
| AGGAAGCACCAGGAAAGCCT+AGG | 0.605391 | 3.4:+83847600 | MS.gene013579:CDS |
| GATTTCAATTCCTTTCAAGT+GGG | 0.605733 | 3.4:+83847577 | MS.gene013579:CDS |
| CTTCTTCCTATAGAACTCCA+AGG | 0.606398 | 3.4:+83847774 | MS.gene013579:CDS |
| TGTCGAGCTCTGATTGGGTG+TGG | 0.614054 | 3.4:-83847628 | None:intergenic |
| CATGGTTTGAGGTGGTGACA+TGG | 0.621041 | 3.4:-83847555 | None:intergenic |
| CAACCTAGGAGGCAGCTCCA+AGG | 0.625813 | 3.4:-83847666 | None:intergenic |
| ATGTCACGGGCTGCTAAAGG+AGG | 0.635685 | 3.4:+83847905 | MS.gene013579:CDS |
| GAATAAGGTGAAGATGTCAC+GGG | 0.637192 | 3.4:+83847892 | MS.gene013579:CDS |
| TCTAACACAGTTGTAGGTGA+AGG | 0.645082 | 3.4:-83847719 | None:intergenic |
| TTCTTCCTATAGAACTCCAA+GGG | 0.650470 | 3.4:+83847775 | MS.gene013579:CDS |
| GTGTTAGATGGGCCTTACGT+GGG | 0.653028 | 3.4:+83847734 | MS.gene013579:CDS |
| AGTTCTATAGGAAGAAGTGA+AGG | 0.661579 | 3.4:-83847768 | None:intergenic |
| ATTGAAATCATGGTTTGAGG+TGG | 0.684990 | 3.4:-83847563 | None:intergenic |
| ATAGGAAGAAGTGAAGGACA+TGG | 0.705802 | 3.4:-83847762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAACTTCAAATAATTA+TGG | - | chr3.4:83848690-83848709 | None:intergenic | 10.0% |
| !! | AGACTAAAAATATATTTAAT+AGG | - | chr3.4:83848667-83848686 | None:intergenic | 10.0% |
| !!! | TTTAATGATAAAATTTTCTT+TGG | + | chr3.4:83850191-83850210 | MS.gene013579:intron | 10.0% |
| !! | TACATATGTAATAAAATTCT+AGG | - | chr3.4:83848986-83849005 | None:intergenic | 15.0% |
| !! | TTGAACTTTAAATATAATAC+AGG | + | chr3.4:83850016-83850035 | MS.gene013579:intron | 15.0% |
| !!! | ACTTTAACCTTTTATAAATT+TGG | - | chr3.4:83849805-83849824 | None:intergenic | 15.0% |
| !!! | ATATATATTTTTTGAACCAA+CGG | + | chr3.4:83850237-83850256 | MS.gene013579:intron | 15.0% |
| !!! | ATATATCTAGTCTTTATTAT+AGG | - | chr3.4:83848167-83848186 | None:intergenic | 15.0% |
| !!! | GATAGATTAAAATTAGTTTA+AGG | - | chr3.4:83848258-83848277 | None:intergenic | 15.0% |
| !!! | TAAGTATTTCTATATATAGT+TGG | + | chr3.4:83848355-83848374 | MS.gene013579:intron | 15.0% |
| !!! | TTTTGATATTTTTTATACTC+TGG | + | chr3.4:83848957-83848976 | MS.gene013579:intron | 15.0% |
| !! | AAAAGAGAGAATGATAATTT+AGG | - | chr3.4:83848289-83848308 | None:intergenic | 20.0% |
| !! | AAAATGAAAGACAAATTTGA+TGG | + | chr3.4:83848319-83848338 | MS.gene013579:intron | 20.0% |
| !! | AAACATTAGTGAGATTAAAA+AGG | + | chr3.4:83848934-83848953 | MS.gene013579:intron | 20.0% |
| !! | AAAGAATGATGAAAAATTGT+AGG | + | chr3.4:83849319-83849338 | MS.gene013579:intron | 20.0% |
| !!! | AATAATAATTTTATACCTGC+AGG | + | chr3.4:83850498-83850517 | MS.gene013579:intron | 20.0% |
| !!! | AATTATCATGATCATTTTTG+TGG | + | chr3.4:83849605-83849624 | MS.gene013579:intron | 20.0% |
| !!! | ATTTTGCTTATATTAGTAAC+CGG | + | chr3.4:83848215-83848234 | MS.gene013579:intron | 20.0% |
| !!! | CTAATTTTAATCTATCAAGA+TGG | + | chr3.4:83848262-83848281 | MS.gene013579:intron | 20.0% |
| !!! | TATCACTGATTTAATTAGTT+AGG | + | chr3.4:83850458-83850477 | MS.gene013579:intron | 20.0% |
| !!! | TTAACCTTTTATAAATTTGG+TGG | - | chr3.4:83849802-83849821 | None:intergenic | 20.0% |
| !!! | TTCATAATATGAAGTTTTGT+CGG | - | chr3.4:83849088-83849107 | None:intergenic | 20.0% |
| !!! | TTTCTTTTACTAACCATTTT+GGG | + | chr3.4:83849177-83849196 | MS.gene013579:intron | 20.0% |
| !!! | TTTTCTTTTACTAACCATTT+TGG | + | chr3.4:83849176-83849195 | MS.gene013579:intron | 20.0% |
| !!! | TTTTTTCATAATCAAACTAG+TGG | + | chr3.4:83849109-83849128 | MS.gene013579:intron | 20.0% |
| ! | ACCTAGAGTTAGAAATTAAA+TGG | - | chr3.4:83849255-83849274 | None:intergenic | 25.0% |
| ! | ATACTAATAGCAACAAAAAG+AGG | - | chr3.4:83849527-83849546 | None:intergenic | 25.0% |
| ! | CCTAGAGTTAGAAATTAAAT+GGG | - | chr3.4:83849254-83849273 | None:intergenic | 25.0% |
| ! | CGAATTATGATAAAAGCAAA+GGG | - | chr3.4:83849773-83849792 | None:intergenic | 25.0% |
| ! | TAAAAGTCTAAACTCTAAAC+TGG | - | chr3.4:83849567-83849586 | None:intergenic | 25.0% |
| ! | TACTAATAGCAACAAAAAGA+GGG | - | chr3.4:83849526-83849545 | None:intergenic | 25.0% |
| ! | TAGTATTGTGTGAAAATCAT+TGG | + | chr3.4:83849541-83849560 | MS.gene013579:intron | 25.0% |
| ! | TCGAATTATGATAAAAGCAA+AGG | - | chr3.4:83849774-83849793 | None:intergenic | 25.0% |
| !! | AAAACTGGAATTCCAATTTT+GGG | + | chr3.4:83847798-83847817 | MS.gene013579:CDS | 25.0% |
| !! | AAGTGCATGCAAATATTTTA+TGG | - | chr3.4:83850144-83850163 | None:intergenic | 25.0% |
| !! | CTTTTGCTTATATTAGTGAT+CGG | - | chr3.4:83848106-83848125 | None:intergenic | 25.0% |
| !! | TTTTCATTGTGTATACTACT+GGG | + | chr3.4:83850274-83850293 | MS.gene013579:intron | 25.0% |
| !!! | ATGATCATTTTTGTGGAAAT+TGG | + | chr3.4:83849612-83849631 | MS.gene013579:intron | 25.0% |
| !!! | TATATTGATGCAAAAGCATT+TGG | - | chr3.4:83848019-83848038 | None:intergenic | 25.0% |
| !!! | TCATAATATGAAGTTTTGTC+GGG | - | chr3.4:83849087-83849106 | None:intergenic | 25.0% |
| AAAGGGAAAATCACATTTGT+GGG | + | chr3.4:83847940-83847959 | MS.gene013579:CDS | 30.0% | |
| AACTAGCAATGACTAACAAA+TGG | - | chr3.4:83848886-83848905 | None:intergenic | 30.0% | |
| AACTCTAGGTAGTAAGAAAT+TGG | + | chr3.4:83849265-83849284 | MS.gene013579:intron | 30.0% | |
| ACTTTCAACAAATACTGTAC+TGG | - | chr3.4:83849831-83849850 | None:intergenic | 30.0% | |
| ATAAAAGAGTTGGAGGTTAT+AGG | - | chr3.4:83848780-83848799 | None:intergenic | 30.0% | |
| ATTAATAAGCAAGGAGATGA+GGG | + | chr3.4:83847848-83847867 | MS.gene013579:CDS | 30.0% | |
| CCATAAATCCAGTCTATAAA+TGG | - | chr3.4:83848392-83848411 | None:intergenic | 30.0% | |
| CCATTATTTGCATAAGTGTA+GGG | - | chr3.4:83849862-83849881 | None:intergenic | 30.0% | |
| CCATTTATAGACTGGATTTA+TGG | + | chr3.4:83848389-83848408 | MS.gene013579:intron | 30.0% | |
| CTTGAAAGGAATTGAAATCA+TGG | - | chr3.4:83847576-83847595 | None:intergenic | 30.0% | |
| GAAAGAAACACAGAGAAAAT+GGG | + | chr3.4:83850567-83850586 | MS.gene013579:CDS | 30.0% | |
| TACCTGCTATAATATTCTGT+CGG | + | chr3.4:83849222-83849241 | MS.gene013579:intron | 30.0% | |
| TCCATTATTTGCATAAGTGT+AGG | - | chr3.4:83849863-83849882 | None:intergenic | 30.0% | |
| TGATTTCAATTCCTTTCAAG+TGG | + | chr3.4:83847576-83847595 | MS.gene013579:CDS | 30.0% | |
| TTATAGCAGGTAAATATGCA+TGG | - | chr3.4:83849214-83849233 | None:intergenic | 30.0% | |
| TTTCATTGTGTATACTACTG+GGG | + | chr3.4:83850275-83850294 | MS.gene013579:intron | 30.0% | |
| ! | AACTCAACTAGTTTGAGATT+AGG | - | chr3.4:83848822-83848841 | None:intergenic | 30.0% |
| ! | ACTCAACTAGTTTGAGATTA+GGG | - | chr3.4:83848821-83848840 | None:intergenic | 30.0% |
| ! | CAAGATTTAAAACCAGTGTT+TGG | - | chr3.4:83848847-83848866 | None:intergenic | 30.0% |
| ! | CACAATTAAAGCATCTACTT+TGG | + | chr3.4:83849413-83849432 | MS.gene013579:intron | 30.0% |
| ! | CCCATTTAATTTCTAACTCT+AGG | + | chr3.4:83849251-83849270 | MS.gene013579:intron | 30.0% |
| ! | CTTTTCATTGTGTATACTAC+TGG | + | chr3.4:83850273-83850292 | MS.gene013579:intron | 30.0% |
| ! | GAAAACTGGAATTCCAATTT+TGG | + | chr3.4:83847797-83847816 | MS.gene013579:CDS | 30.0% |
| ! | GATTTCAATTCCTTTCAAGT+GGG | + | chr3.4:83847577-83847596 | MS.gene013579:CDS | 30.0% |
| ! | GCTTTTATCATAATTCGATG+TGG | + | chr3.4:83849776-83849795 | MS.gene013579:intron | 30.0% |
| !! | ATGTGATTTTCCCTTTGAAA+TGG | - | chr3.4:83847936-83847955 | None:intergenic | 30.0% |
| !!! | CTGGTTTTAAATCTTGTTTG+TGG | + | chr3.4:83848851-83848870 | MS.gene013579:intron | 30.0% |
| !!! | TGTGATTTTCCCTTTGAAAT+GGG | - | chr3.4:83847935-83847954 | None:intergenic | 30.0% |
| !!! | TTTTCAACTTCTAGCTTGAA+AGG | - | chr3.4:83849893-83849912 | None:intergenic | 30.0% |
| AAACAAACAGCAGAAACAGT+TGG | + | chr3.4:83849910-83849929 | MS.gene013579:intron | 35.0% | |
| AACAAACAGCAGAAACAGTT+GGG | + | chr3.4:83849911-83849930 | MS.gene013579:intron | 35.0% | |
| AAGCAAAATTGCAAAACCGT+TGG | - | chr3.4:83850256-83850275 | None:intergenic | 35.0% | |
| AGAATAAGGTGAAGATGTCA+CGG | + | chr3.4:83847891-83847910 | MS.gene013579:CDS | 35.0% | |
| AGGTAGTGAAAGTCATCTTT+CGG | - | chr3.4:83849939-83849958 | None:intergenic | 35.0% | |
| AGTTCTATAGGAAGAAGTGA+AGG | - | chr3.4:83847771-83847790 | None:intergenic | 35.0% | |
| ATAATAATGCAGAGCAGTTG+AGG | + | chr3.4:83849684-83849703 | MS.gene013579:intron | 35.0% | |
| ATTAAATCTGGGTCACACAT+TGG | + | chr3.4:83850330-83850349 | MS.gene013579:intron | 35.0% | |
| ATTGAAATCATGGTTTGAGG+TGG | - | chr3.4:83847566-83847585 | None:intergenic | 35.0% | |
| CAAAGGGAAAATCACATTTG+TGG | + | chr3.4:83847939-83847958 | MS.gene013579:CDS | 35.0% | |
| CAATACAGTTAGAACAACCT+TGG | + | chr3.4:83847649-83847668 | MS.gene013579:CDS | 35.0% | |
| CCCTACACTTATGCAAATAA+TGG | + | chr3.4:83849859-83849878 | MS.gene013579:intron | 35.0% | |
| CTAGGTAGTAAGAAATTGGT+AGG | + | chr3.4:83849269-83849288 | MS.gene013579:intron | 35.0% | |
| CTTGTGTGACATTAATGTCA+CGG | + | chr3.4:83850303-83850322 | MS.gene013579:intron | 35.0% | |
| GATTAATAAGCAAGGAGATG+AGG | + | chr3.4:83847847-83847866 | MS.gene013579:CDS | 35.0% | |
| GGAAAGAAACACAGAGAAAA+TGG | + | chr3.4:83850566-83850585 | MS.gene013579:CDS | 35.0% | |
| GGAATTGAAATCATGGTTTG+AGG | - | chr3.4:83847569-83847588 | None:intergenic | 35.0% | |
| GTGATATTAGATGTGTTGTG+TGG | + | chr3.4:83850353-83850372 | MS.gene013579:intron | 35.0% | |
| GTGGCCACCAAATTTATAAA+AGG | + | chr3.4:83849795-83849814 | MS.gene013579:intron | 35.0% | |
| TACCGACAGAATATTATAGC+AGG | - | chr3.4:83849227-83849246 | None:intergenic | 35.0% | |
| TACTGCTACTCTATAGCAAA+CGG | - | chr3.4:83849492-83849511 | None:intergenic | 35.0% | |
| TAGTTGAGTTATCCAAACAC+TGG | + | chr3.4:83848832-83848851 | MS.gene013579:intron | 35.0% | |
| TGCTTATATTAGTAACCGGA+GGG | + | chr3.4:83848219-83848238 | MS.gene013579:intron | 35.0% | |
| TGCTTATATTAGTGATCGGA+AGG | - | chr3.4:83848102-83848121 | None:intergenic | 35.0% | |
| TTAAATCTGGGTCACACATT+GGG | + | chr3.4:83850331-83850350 | MS.gene013579:intron | 35.0% | |
| TTCGGGAAGATTAATAAGCA+AGG | + | chr3.4:83847839-83847858 | MS.gene013579:CDS | 35.0% | |
| TTCTTCCTATAGAACTCCAA+GGG | + | chr3.4:83847775-83847794 | MS.gene013579:CDS | 35.0% | |
| TTGCTTATATTAGTAACCGG+AGG | + | chr3.4:83848218-83848237 | MS.gene013579:intron | 35.0% | |
| ! | TAACCATTTTGGGCTAATTG+TGG | + | chr3.4:83849187-83849206 | MS.gene013579:intron | 35.0% |
| !! | TGACTTTTCTGGTCAGAATA+AGG | + | chr3.4:83847877-83847896 | MS.gene013579:CDS | 35.0% |
| !!! | TGTTTTTTTTTCCTGAAGCC+AGG | - | chr3.4:83849959-83849978 | None:intergenic | 35.0% |
| ATAGAACTCCAAGGGAAAAC+TGG | + | chr3.4:83847783-83847802 | MS.gene013579:CDS | 40.0% | |
| ATAGGAAGAAGTGAAGGACA+TGG | - | chr3.4:83847765-83847784 | None:intergenic | 40.0% | |
| ATTAGGGCTAAAAGAGTTGG+AGG | - | chr3.4:83848805-83848824 | None:intergenic | 40.0% | |
| ATTGTCATTGCCATTGCATC+TGG | - | chr3.4:83850380-83850399 | None:intergenic | 40.0% | |
| CACCTACAACTGTGTTAGAT+GGG | + | chr3.4:83847723-83847742 | MS.gene013579:CDS | 40.0% | |
| CTTCTTCCTATAGAACTCCA+AGG | + | chr3.4:83847774-83847793 | MS.gene013579:CDS | 40.0% | |
| GAAAGATGACTTTCACTACC+TGG | + | chr3.4:83849938-83849957 | MS.gene013579:intron | 40.0% | |
| GAATAAGGTGAAGATGTCAC+GGG | + | chr3.4:83847892-83847911 | MS.gene013579:CDS | 40.0% | |
| GAGAGTGACCATTTATAGAC+TGG | + | chr3.4:83848381-83848400 | MS.gene013579:intron | 40.0% | |
| GAGATTAGGGCTAAAAGAGT+TGG | - | chr3.4:83848808-83848827 | None:intergenic | 40.0% | |
| GCAATGGCAATGACAATATG+TGG | + | chr3.4:83850383-83850402 | MS.gene013579:intron | 40.0% | |
| GCTTCCAAAAATAGCAACCT+AGG | - | chr3.4:83847683-83847702 | None:intergenic | 40.0% | |
| GTCACGGTGACATTAAATCT+GGG | + | chr3.4:83850319-83850338 | MS.gene013579:intron | 40.0% | |
| GTTGGAGGTCATAAAAGAGT+TGG | - | chr3.4:83848790-83848809 | None:intergenic | 40.0% | |
| TCACCTACAACTGTGTTAGA+TGG | + | chr3.4:83847722-83847741 | MS.gene013579:CDS | 40.0% | |
| TCCAAAAATAGCAACCTAGG+AGG | - | chr3.4:83847680-83847699 | None:intergenic | 40.0% | |
| TCTAACACAGTTGTAGGTGA+AGG | - | chr3.4:83847722-83847741 | None:intergenic | 40.0% | |
| TGAAGGAACATCAACCTTGT+TGG | - | chr3.4:83847705-83847724 | None:intergenic | 40.0% | |
| TGGAAAGAGAAAACTTTGCG+AGG | + | chr3.4:83850211-83850230 | MS.gene013579:intron | 40.0% | |
| TGTCACGGTGACATTAAATC+TGG | + | chr3.4:83850318-83850337 | MS.gene013579:intron | 40.0% | |
| TTATGACAGCTTCAAGCAAG+TGG | + | chr3.4:83850528-83850547 | MS.gene013579:CDS | 40.0% | |
| TTGTCATTGCCATTGCATCT+GGG | - | chr3.4:83850379-83850398 | None:intergenic | 40.0% | |
| ! | AAAGTGTCACCCATACTACT+GGG | + | chr3.4:83850424-83850443 | MS.gene013579:intron | 40.0% |
| ! | GTTTTCCCTTGGAGTTCTAT+AGG | - | chr3.4:83847783-83847802 | None:intergenic | 40.0% |
| ! | TGTATTGTCGAGCTCTGATT+GGG | - | chr3.4:83847636-83847655 | None:intergenic | 40.0% |
| ! | TTCAATTCCTTTCAAGTGGG+AGG | + | chr3.4:83847580-83847599 | MS.gene013579:CDS | 40.0% |
| ! | TTGGAATTCCAGTTTTCCCT+TGG | - | chr3.4:83847794-83847813 | None:intergenic | 40.0% |
| !! | ATTCCAATTTTGGGTCTAGC+AGG | + | chr3.4:83847807-83847826 | MS.gene013579:CDS | 40.0% |
| !!! | GAGGGTAGTTTTGACTTTTC+TGG | + | chr3.4:83847866-83847885 | MS.gene013579:CDS | 40.0% |
| !!! | GCTATTTTTGGAAGCCAACA+AGG | + | chr3.4:83847688-83847707 | MS.gene013579:CDS | 40.0% |
| AAGTGTCACCCATACTACTG+GGG | + | chr3.4:83850425-83850444 | MS.gene013579:intron | 45.0% | |
| AGGAGGAAGTCCCATTTCAA+AGG | + | chr3.4:83847922-83847941 | MS.gene013579:CDS | 45.0% | |
| CAGTAGTATGGGTGACACTT+TGG | - | chr3.4:83850425-83850444 | None:intergenic | 45.0% | |
| GGAGGAAGTCCCATTTCAAA+GGG | + | chr3.4:83847923-83847942 | MS.gene013579:CDS | 45.0% | |
| GGAGGTCATAAAAGAGTTGG+AGG | - | chr3.4:83848787-83848806 | None:intergenic | 45.0% | |
| GGTCCACAATTAGCCCAAAA+TGG | - | chr3.4:83849193-83849212 | None:intergenic | 45.0% | |
| GTAGGTAAGATGACTGTGCT+GGG | + | chr3.4:83849337-83849356 | MS.gene013579:intron | 45.0% | |
| TGTAGGTAAGATGACTGTGC+TGG | + | chr3.4:83849336-83849355 | MS.gene013579:intron | 45.0% | |
| TGTCATAAATGCTTGCCTGC+AGG | - | chr3.4:83850516-83850535 | None:intergenic | 45.0% | |
| TTTCTTTCCTGCGTCTCCAA+GGG | - | chr3.4:83850555-83850574 | None:intergenic | 45.0% | |
| ! | CAAAGTGTCACCCATACTAC+TGG | + | chr3.4:83850423-83850442 | MS.gene013579:intron | 45.0% |
| ! | CTGTATTGTCGAGCTCTGAT+TGG | - | chr3.4:83847637-83847656 | None:intergenic | 45.0% |
| !!! | GCCTCCTAGGTTGCTATTTT+TGG | + | chr3.4:83847676-83847695 | MS.gene013579:CDS | 45.0% |
| !!! | AATTATATATATTTTTTGAA+AGG | + | chr3.4:83848630-83848649 | MS.gene013579:intron | 5.0% |
| !!! | TTTATTTTTTAAAACAAAAA+AGG | + | chr3.4:83850047-83850066 | MS.gene013579:intron | 5.0% |
| AAGAAGTGAAGGACATGGCC+CGG | - | chr3.4:83847760-83847779 | None:intergenic | 50.0% | |
| CCACCTGCTAGACCCAAAAT+TGG | - | chr3.4:83847813-83847832 | None:intergenic | 50.0% | |
| CTTGTCCTCCCCAGTAGTAT+GGG | - | chr3.4:83850436-83850455 | None:intergenic | 50.0% | |
| GACTTTCACTACCTGGCTTC+AGG | + | chr3.4:83849945-83849964 | MS.gene013579:intron | 50.0% | |
| GGACTATCTTGTACTCCCTC+CGG | - | chr3.4:83848237-83848256 | None:intergenic | 50.0% | |
| GGCCCATCTAACACAGTTGT+AGG | - | chr3.4:83847728-83847747 | None:intergenic | 50.0% | |
| GTGTTAGATGGGCCTTACGT+GGG | + | chr3.4:83847734-83847753 | MS.gene013579:CDS | 50.0% | |
| GTTTCTTTCCTGCGTCTCCA+AGG | - | chr3.4:83850556-83850575 | None:intergenic | 50.0% | |
| TCTAGCAGGTGGAGTGGTTT+CGG | + | chr3.4:83847821-83847840 | MS.gene013579:CDS | 50.0% | |
| TCTTGTCCTCCCCAGTAGTA+TGG | - | chr3.4:83850437-83850456 | None:intergenic | 50.0% | |
| TGTGTTAGATGGGCCTTACG+TGG | + | chr3.4:83847733-83847752 | MS.gene013579:CDS | 50.0% | |
| ! | AAGATGTCACGGGCTGCTAA+AGG | + | chr3.4:83847902-83847921 | MS.gene013579:CDS | 50.0% |
| ! | CATGGTTTGAGGTGGTGACA+TGG | - | chr3.4:83847558-83847577 | None:intergenic | 50.0% |
| !! | CCAATTTTGGGTCTAGCAGG+TGG | + | chr3.4:83847810-83847829 | MS.gene013579:CDS | 50.0% |
| CTAGCAGGTGGAGTGGTTTC+GGG | + | chr3.4:83847822-83847841 | MS.gene013579:CDS | 55.0% | |
| GCTTCAAGCAAGTGGTCCCT+TGG | + | chr3.4:83850536-83850555 | MS.gene013579:CDS | 55.0% | |
| GGTGCTTCCTCCCACTTGAA+AGG | - | chr3.4:83847590-83847609 | None:intergenic | 55.0% | |
| GTTGTGTGGCCCAGATGCAA+TGG | + | chr3.4:83850367-83850386 | MS.gene013579:intron | 55.0% | |
| TGTCACCCATACTACTGGGG+AGG | + | chr3.4:83850428-83850447 | MS.gene013579:intron | 55.0% | |
| TTTGGGTCTAGCAGGTGGAG+TGG | + | chr3.4:83847815-83847834 | MS.gene013579:CDS | 55.0% | |
| ! | ATGTCACGGGCTGCTAAAGG+AGG | + | chr3.4:83847905-83847924 | MS.gene013579:CDS | 55.0% |
| ! | GATTGGGTGTGGTAGTGCCT+AGG | - | chr3.4:83847620-83847639 | None:intergenic | 55.0% |
| ! | TGCAGAGCAGTTGAGGCGTT+AGG | + | chr3.4:83849691-83849710 | MS.gene013579:intron | 55.0% |
| ! | TGGTAGTGCCTAGGCTTTCC+TGG | - | chr3.4:83847611-83847630 | None:intergenic | 55.0% |
| ! | TGTCGAGCTCTGATTGGGTG+TGG | - | chr3.4:83847631-83847650 | None:intergenic | 55.0% |
| !! | AGGAAGCACCAGGAAAGCCT+AGG | + | chr3.4:83847600-83847619 | MS.gene013579:CDS | 55.0% |
| !! | TTCAAGTGGGAGGAAGCACC+AGG | + | chr3.4:83847590-83847609 | MS.gene013579:CDS | 55.0% |
| AAGTGGTCCCTTGGAGACGC+AGG | + | chr3.4:83850545-83850564 | MS.gene013579:CDS | 60.0% | |
| CAACCTAGGAGGCAGCTCCA+AGG | - | chr3.4:83847669-83847688 | None:intergenic | 60.0% | |
| CAACCTTGGAGCTGCCTCCT+AGG | + | chr3.4:83847663-83847682 | MS.gene013579:CDS | 60.0% | |
| TAGATGGGCCTTACGTGGGC+CGG | + | chr3.4:83847738-83847757 | MS.gene013579:CDS | 60.0% | |
| AGATGGGCCTTACGTGGGCC+GGG | + | chr3.4:83847739-83847758 | MS.gene013579:CDS | 65.0% | |
| GACATGGCCCGGCCCACGTA+AGG | - | chr3.4:83847749-83847768 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83847539 | 83850612 | 83847539 | ID=MS.gene013579 |
| chr3.4 | mRNA | 83847539 | 83850612 | 83847539 | ID=MS.gene013579.t1;Parent=MS.gene013579 |
| chr3.4 | exon | 83847539 | 83847961 | 83847539 | ID=MS.gene013579.t1.exon1;Parent=MS.gene013579.t1 |
| chr3.4 | CDS | 83847539 | 83847961 | 83847539 | ID=cds.MS.gene013579.t1;Parent=MS.gene013579.t1 |
| chr3.4 | exon | 83850520 | 83850612 | 83850520 | ID=MS.gene013579.t1.exon2;Parent=MS.gene013579.t1 |
| chr3.4 | CDS | 83850520 | 83850612 | 83850520 | ID=cds.MS.gene013579.t1;Parent=MS.gene013579.t1 |
| Gene Sequence |
| Protein sequence |
