Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06909.t1 | XP_003602268.1 | 97.1 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 3.20E-88 | 334.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06909.t1 | G7J7F8 | 97.1 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.3e-88 | 334.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057114 | MS.gene06909 | 0.842311 | 2.79E-58 | -1.69E-46 |
| MS.gene057116 | MS.gene06909 | 0.802345 | 5.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06909 | MS.gene31640 | PPI |
| MS.gene013579 | MS.gene06909 | PPI |
| MS.gene059160 | MS.gene06909 | PPI |
| MS.gene057116 | MS.gene06909 | PPI |
| MS.gene06696 | MS.gene06909 | PPI |
| MS.gene021450 | MS.gene06909 | PPI |
| MS.gene06909 | MS.gene059161 | PPI |
| MS.gene06909 | MS.gene54540 | PPI |
| MS.gene06909 | MS.gene021450 | PPI |
| MS.gene059162 | MS.gene06909 | PPI |
| MS.gene057114 | MS.gene06909 | PPI |
| MS.gene06909 | MS.gene06907 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06909.t1 | MTR_3g091680 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 7.43e-120 | 335 |
| MS.gene06909.t1 | MTR_1g007905 | 58.286 | 175 | 59 | 5 | 1 | 162 | 36 | 209 | 1.88e-57 | 179 |
| MS.gene06909.t1 | MTR_7g117695 | 31.551 | 187 | 83 | 6 | 9 | 158 | 44 | 222 | 9.14e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06909.t1 | AT5G53030 | 37.000 | 200 | 80 | 8 | 5 | 159 | 37 | 235 | 2.37e-24 | 95.5 |
| MS.gene06909.t1 | AT4G27810 | 38.922 | 167 | 77 | 5 | 5 | 159 | 33 | 186 | 4.61e-22 | 88.2 |
| MS.gene06909.t1 | AT5G53030 | 36.216 | 185 | 76 | 7 | 5 | 148 | 37 | 220 | 6.55e-19 | 80.5 |
Find 61 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTGGAATTCCAATTT+TGG | 0.127410 | 3.2:+77113973 | MS.gene06909:CDS |
| GGAAAGAAACACAGAGAAAA+TGG | 0.227357 | 3.2:+77116776 | MS.gene06909:CDS |
| CTAGCAGGTGGAGTGGTTTC+AGG | 0.269736 | 3.2:+77113998 | MS.gene06909:CDS |
| CCACCTGCTAGACCCAAAAT+TGG | 0.283838 | 3.2:-77113986 | None:intergenic |
| TCACCTACAACTGTGTTAGA+TGG | 0.315146 | 3.2:+77113898 | MS.gene06909:CDS |
| GGATTAAATGGTGTCGGTTA+TGG | 0.318250 | 3.2:-77116803 | None:intergenic |
| ATAGAACTCCAAGGGAAAAC+TGG | 0.328757 | 3.2:+77113959 | MS.gene06909:CDS |
| TGGTTTCAGGAAGATTAATA+AGG | 0.332948 | 3.2:+77114011 | MS.gene06909:CDS |
| CTTGAAAGGAATTGAAATCA+TGG | 0.366715 | 3.2:-77113749 | None:intergenic |
| AAAGGGAAAATCACATTTGT+GGG | 0.419238 | 3.2:+77114116 | MS.gene06909:CDS |
| TGGTAGTGCCTAGGCTTCCC+TGG | 0.422749 | 3.2:-77113784 | None:intergenic |
| CAACCTTGGAACTGCCTCCT+AGG | 0.434449 | 3.2:+77113839 | MS.gene06909:CDS |
| CAAAGGGAAAATCACATTTG+TGG | 0.438574 | 3.2:+77114115 | MS.gene06909:CDS |
| TAGATGGGCCTTACGTGGGC+CGG | 0.448015 | 3.2:+77113914 | MS.gene06909:CDS |
| ATTAATAAGGAAGGAGATGA+GGG | 0.450852 | 3.2:+77114024 | MS.gene06909:CDS |
| GTTTCTTTCCTGCGTCTCCA+AGG | 0.455727 | 3.2:-77116763 | None:intergenic |
| TGAAGGAACATCAACCTTGT+TGG | 0.458738 | 3.2:-77113878 | None:intergenic |
| TTCAAGTGGGAGGAAGCACC+AGG | 0.461383 | 3.2:+77113766 | MS.gene06909:CDS |
| CTGTATTGTCGAGCTCTGAT+TGG | 0.465440 | 3.2:-77113810 | None:intergenic |
| AGATGGGCCTTACGTGGGCC+GGG | 0.475085 | 3.2:+77113915 | MS.gene06909:CDS |
| GCTTCAAGCAAGTGGTCCCT+TGG | 0.480684 | 3.2:+77116746 | MS.gene06909:CDS |
| TTTCTTTCCTGCGTCTCCAA+GGG | 0.483332 | 3.2:-77116762 | None:intergenic |
| GGAATTGAAATCATGGTTTG+AGG | 0.484375 | 3.2:-77113742 | None:intergenic |
| TTCAGGAAGATTAATAAGGA+AGG | 0.487183 | 3.2:+77114015 | MS.gene06909:CDS |
| GAAAGAAACACAGAGAAAAT+GGG | 0.492618 | 3.2:+77116777 | MS.gene06909:CDS |
| GGAGGAAGTCCCATTTCAAA+GGG | 0.501251 | 3.2:+77114099 | MS.gene06909:CDS |
| AGGAAGCACCAGGGAAGCCT+AGG | 0.504051 | 3.2:+77113776 | MS.gene06909:CDS |
| AAGATGTCACGGGCTGCTAA+AGG | 0.520498 | 3.2:+77114078 | MS.gene06909:CDS |
| GGCCCATCTAACACAGTTGT+AGG | 0.520900 | 3.2:-77113901 | None:intergenic |
| GACATGGCCCGGCCCACGTA+AGG | 0.522178 | 3.2:-77113922 | None:intergenic |
| GATTGGGTGTGGTAGTGCCT+AGG | 0.526775 | 3.2:-77113793 | None:intergenic |
| GATTAATAAGGAAGGAGATG+AGG | 0.528348 | 3.2:+77114023 | MS.gene06909:CDS |
| AGGAGGAAGTCCCATTTCAA+AGG | 0.530152 | 3.2:+77114098 | MS.gene06909:CDS |
| TGTATTGTCGAGCTCTGATT+GGG | 0.531093 | 3.2:-77113809 | None:intergenic |
| CACCTACAACTGTGTTAGAT+GGG | 0.532506 | 3.2:+77113899 | MS.gene06909:CDS |
| AAGAAGTGAAGGACATGGCC+CGG | 0.535442 | 3.2:-77113933 | None:intergenic |
| GGTGCTTCCTCCCACTTGAA+AGG | 0.541875 | 3.2:-77113763 | None:intergenic |
| TGATTTCAATTCCTTTCAAG+TGG | 0.550003 | 3.2:+77113752 | MS.gene06909:CDS |
| TTCAATTCCTTTCAAGTGGG+AGG | 0.551211 | 3.2:+77113756 | MS.gene06909:CDS |
| TTTGGGTCTAGCAGGTGGAG+TGG | 0.556268 | 3.2:+77113991 | MS.gene06909:CDS |
| TGTGTTAGATGGGCCTTACG+TGG | 0.559160 | 3.2:+77113909 | MS.gene06909:CDS |
| TTATGATAGCTTCAAGCAAG+TGG | 0.561111 | 3.2:+77116738 | MS.gene06909:CDS |
| CAATACAGTTAGAACAACCT+TGG | 0.565902 | 3.2:+77113825 | MS.gene06909:CDS |
| AAGTGGTCCCTTGGAGACGC+AGG | 0.575329 | 3.2:+77116755 | MS.gene06909:CDS |
| TCAACAACCAATAATGTCAT+CGG | 0.578794 | 3.2:+77113702 | None:intergenic |
| TCTAAAGGATTAAATGGTGT+CGG | 0.581278 | 3.2:-77116809 | None:intergenic |
| AGAATAAGGTGAAGATGTCA+CGG | 0.584256 | 3.2:+77114067 | MS.gene06909:CDS |
| GATTTCAATTCCTTTCAAGT+GGG | 0.605733 | 3.2:+77113753 | MS.gene06909:CDS |
| CTTCTTCCTATAGAACTCCA+AGG | 0.606398 | 3.2:+77113950 | MS.gene06909:CDS |
| TGTCGAGCTCTGATTGGGTG+TGG | 0.614054 | 3.2:-77113804 | None:intergenic |
| CATGGTTTGAGGTGGTGACA+TGG | 0.621041 | 3.2:-77113731 | None:intergenic |
| ATGTCACGGGCTGCTAAAGG+AGG | 0.635685 | 3.2:+77114081 | MS.gene06909:CDS |
| CAACCTAGGAGGCAGTTCCA+AGG | 0.636697 | 3.2:-77113842 | None:intergenic |
| GAATAAGGTGAAGATGTCAC+GGG | 0.637192 | 3.2:+77114068 | MS.gene06909:CDS |
| TCTAACACAGTTGTAGGTGA+AGG | 0.645082 | 3.2:-77113895 | None:intergenic |
| TTCTTCCTATAGAACTCCAA+GGG | 0.650470 | 3.2:+77113951 | MS.gene06909:CDS |
| GTGTTAGATGGGCCTTACGT+GGG | 0.653028 | 3.2:+77113910 | MS.gene06909:CDS |
| AGTTCTATAGGAAGAAGTGA+AGG | 0.661579 | 3.2:-77113944 | None:intergenic |
| ATTGAAATCATGGTTTGAGG+TGG | 0.684990 | 3.2:-77113739 | None:intergenic |
| ATAGGAAGAAGTGAAGGACA+TGG | 0.705802 | 3.2:-77113938 | None:intergenic |
| TCAAGTGGGAGGAAGCACCA+GGG | 0.732644 | 3.2:+77113767 | MS.gene06909:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAACTTCAAATAATTA+TGG | - | chr3.2:77114981-77115000 | None:intergenic | 10.0% |
| !! | AGACTAAAAATATATTTAAT+AGG | - | chr3.2:77114958-77114977 | None:intergenic | 10.0% |
| !!! | AGTATTTGTTAAAAAAATAA+TGG | + | chr3.2:77116125-77116144 | MS.gene06909:intron | 10.0% |
| !!! | TTTAATGATAAAATTTTCTT+TGG | + | chr3.2:77116551-77116570 | MS.gene06909:intron | 10.0% |
| !! | TACATATGTAATAAAATTCT+AGG | - | chr3.2:77115275-77115294 | None:intergenic | 15.0% |
| !! | TTGAACTTTAAATATAATAC+AGG | + | chr3.2:77116366-77116385 | MS.gene06909:intron | 15.0% |
| !!! | ACTTTAACCTTTTATAAATT+TGG | - | chr3.2:77116095-77116114 | None:intergenic | 15.0% |
| !!! | GTCATTTTTTAAAACAAAAA+AGG | + | chr3.2:77116407-77116426 | MS.gene06909:intron | 15.0% |
| !!! | TAAGTATTTCTATATATAGT+TGG | + | chr3.2:77114531-77114550 | MS.gene06909:intron | 15.0% |
| !!! | TTTTGATATTTTTTATACTC+TGG | + | chr3.2:77115246-77115265 | MS.gene06909:intron | 15.0% |
| !! | AAAAGAGAGAATGATAATTT+AGG | - | chr3.2:77114465-77114484 | None:intergenic | 20.0% |
| !! | AAAATGAAAGACAAATTTGA+TGG | + | chr3.2:77114495-77114514 | MS.gene06909:intron | 20.0% |
| !! | AAACATTAGTGAGATTAAAA+AGG | + | chr3.2:77115223-77115242 | MS.gene06909:intron | 20.0% |
| !! | AAAGAATGATGAAAAATTGT+AGG | + | chr3.2:77115610-77115629 | MS.gene06909:intron | 20.0% |
| !! | ATGTATGTAGTCTTTATTAT+AGG | - | chr3.2:77114343-77114362 | None:intergenic | 20.0% |
| !!! | AAATTAGTTTAAGGACTATT+TGG | - | chr3.2:77114425-77114444 | None:intergenic | 20.0% |
| !!! | AAGTGTATGCAAATATTTTA+TGG | - | chr3.2:77116504-77116523 | None:intergenic | 20.0% |
| !!! | AATAATAATTTTATACCTGC+AGG | + | chr3.2:77116708-77116727 | MS.gene06909:intron | 20.0% |
| !!! | AATTATCATGATCATTTTTG+TGG | + | chr3.2:77115896-77115915 | MS.gene06909:intron | 20.0% |
| !!! | AGTCAATTTTCTCTTATAAA+TGG | - | chr3.2:77114688-77114707 | None:intergenic | 20.0% |
| !!! | ATATTTTTTTTTTGAACCCA+CGG | + | chr3.2:77116597-77116616 | MS.gene06909:intron | 20.0% |
| !!! | ATTATAAGTGATAGTGATAT+TGG | + | chr3.2:77116170-77116189 | MS.gene06909:intron | 20.0% |
| !!! | ATTTTGCTTATATTAGTGAT+CGG | + | chr3.2:77114391-77114410 | MS.gene06909:intron | 20.0% |
| !!! | GATAGATTCAAATTAGTTTA+AGG | - | chr3.2:77114434-77114453 | None:intergenic | 20.0% |
| !!! | GTCAATTTTCTCTTATAAAT+GGG | - | chr3.2:77114687-77114706 | None:intergenic | 20.0% |
| !!! | TATCACTGATTTAATTAGTT+AGG | + | chr3.2:77116668-77116687 | MS.gene06909:intron | 20.0% |
| !!! | TTAACCTTTTATAAATTTGG+TGG | - | chr3.2:77116092-77116111 | None:intergenic | 20.0% |
| !!! | TTCATAATATGAAGTTTTGT+CGG | - | chr3.2:77115378-77115397 | None:intergenic | 20.0% |
| !!! | TTTCTTTTACTAACCATTTT+GGG | + | chr3.2:77115468-77115487 | MS.gene06909:intron | 20.0% |
| !!! | TTTTCTTTTACTAACCATTT+TGG | + | chr3.2:77115467-77115486 | MS.gene06909:intron | 20.0% |
| !!! | TTTTTTAACAAATACTGTAC+TGG | - | chr3.2:77116121-77116140 | None:intergenic | 20.0% |
| !!! | TTTTTTCATAATCAAACTAG+TGG | + | chr3.2:77115400-77115419 | MS.gene06909:intron | 20.0% |
| ! | ACCTAGAGTTAGAAATTAAA+TGG | - | chr3.2:77115546-77115565 | None:intergenic | 25.0% |
| ! | ATCGAATATGATAAAAGCAA+AGG | - | chr3.2:77116065-77116084 | None:intergenic | 25.0% |
| ! | CCTAGAGTTAGAAATTAAAT+GGG | - | chr3.2:77115545-77115564 | None:intergenic | 25.0% |
| ! | CTAATTTGAATCTATCAAGA+TGG | + | chr3.2:77114438-77114457 | MS.gene06909:intron | 25.0% |
| ! | GTAAATTGTCTCTTGTAAAT+AGG | + | chr3.2:77114786-77114805 | MS.gene06909:intron | 25.0% |
| ! | TAAAAGTCTAAACTCTAAAC+TGG | - | chr3.2:77115858-77115877 | None:intergenic | 25.0% |
| ! | TAGTATTGTGTGAAAATCAT+TGG | + | chr3.2:77115832-77115851 | MS.gene06909:intron | 25.0% |
| ! | TCGAATATGATAAAAGCAAA+GGG | - | chr3.2:77116064-77116083 | None:intergenic | 25.0% |
| !! | AAAACTGGAATTCCAATTTT+GGG | + | chr3.2:77113974-77113993 | MS.gene06909:CDS | 25.0% |
| !! | CTTTTGCTTATATTAGTGAT+TGG | - | chr3.2:77114282-77114301 | None:intergenic | 25.0% |
| !! | TGATTTTCACACAATACTAA+TGG | - | chr3.2:77115831-77115850 | None:intergenic | 25.0% |
| !! | TTTTCATTGTGTATACTACT+GGG | + | chr3.2:77116634-77116653 | MS.gene06909:intron | 25.0% |
| !!! | ATGATCATTTTTGTGGAAAT+TGG | + | chr3.2:77115903-77115922 | MS.gene06909:intron | 25.0% |
| !!! | TATATTGATGCAAAAGCATT+TGG | - | chr3.2:77114195-77114214 | None:intergenic | 25.0% |
| !!! | TCATAATATGAAGTTTTGTC+GGG | - | chr3.2:77115377-77115396 | None:intergenic | 25.0% |
| AAAGGGAAAATCACATTTGT+GGG | + | chr3.2:77114116-77114135 | MS.gene06909:CDS | 30.0% | |
| AACTAGCAATGACTAACAAA+TGG | - | chr3.2:77115175-77115194 | None:intergenic | 30.0% | |
| AACTCTAGGTAGTAAGAAAT+TGG | + | chr3.2:77115556-77115575 | MS.gene06909:intron | 30.0% | |
| ATACTAATGGCAACAAAAAG+AGG | - | chr3.2:77115818-77115837 | None:intergenic | 30.0% | |
| ATTAATAAGGAAGGAGATGA+GGG | + | chr3.2:77114024-77114043 | MS.gene06909:CDS | 30.0% | |
| CACAATTATAGCATCTACTT+TGG | + | chr3.2:77115704-77115723 | MS.gene06909:intron | 30.0% | |
| CCATAAATCCAGTCTATAAA+TGG | - | chr3.2:77114568-77114587 | None:intergenic | 30.0% | |
| CCATTATTTGCATAAGTGTA+GGG | - | chr3.2:77116221-77116240 | None:intergenic | 30.0% | |
| CCATTTATAGACTGGATTTA+TGG | + | chr3.2:77114565-77114584 | MS.gene06909:intron | 30.0% | |
| CTTGAAAGGAATTGAAATCA+TGG | - | chr3.2:77113752-77113771 | None:intergenic | 30.0% | |
| GAAAGAAACACAGAGAAAAT+GGG | + | chr3.2:77116777-77116796 | MS.gene06909:CDS | 30.0% | |
| TACCTGCTATAATATTCTGT+CGG | + | chr3.2:77115513-77115532 | MS.gene06909:intron | 30.0% | |
| TACTAATGGCAACAAAAAGA+GGG | - | chr3.2:77115817-77115836 | None:intergenic | 30.0% | |
| TACTACTACTCTATAGCAAA+CGG | - | chr3.2:77115783-77115802 | None:intergenic | 30.0% | |
| TCAATTATTCACATAGCGTA+CGG | - | chr3.2:77114813-77114832 | None:intergenic | 30.0% | |
| TCCATTATTTGCATAAGTGT+AGG | - | chr3.2:77116222-77116241 | None:intergenic | 30.0% | |
| TGATTTCAATTCCTTTCAAG+TGG | + | chr3.2:77113752-77113771 | MS.gene06909:CDS | 30.0% | |
| TGGTTTCAGGAAGATTAATA+AGG | + | chr3.2:77114011-77114030 | MS.gene06909:CDS | 30.0% | |
| TTATAGCAGGTAAATATGCA+TGG | - | chr3.2:77115505-77115524 | None:intergenic | 30.0% | |
| TTCAGGAAGATTAATAAGGA+AGG | + | chr3.2:77114015-77114034 | MS.gene06909:CDS | 30.0% | |
| TTTCATTGTGTATACTACTG+GGG | + | chr3.2:77116635-77116654 | MS.gene06909:intron | 30.0% | |
| ! | CAAGATTTAAAACCAGTGTT+TGG | - | chr3.2:77115136-77115155 | None:intergenic | 30.0% |
| ! | CCCATTTAATTTCTAACTCT+AGG | + | chr3.2:77115542-77115561 | MS.gene06909:intron | 30.0% |
| ! | CTTTTCATTGTGTATACTAC+TGG | + | chr3.2:77116633-77116652 | MS.gene06909:intron | 30.0% |
| ! | GAAAACTGGAATTCCAATTT+TGG | + | chr3.2:77113973-77113992 | MS.gene06909:CDS | 30.0% |
| ! | GATTTCAATTCCTTTCAAGT+GGG | + | chr3.2:77113753-77113772 | MS.gene06909:CDS | 30.0% |
| ! | TGCTTTTATCATATTCGATG+TGG | + | chr3.2:77116066-77116085 | MS.gene06909:intron | 30.0% |
| ! | TTTTCTCTTATAAATGGGAC+CGG | - | chr3.2:77114682-77114701 | None:intergenic | 30.0% |
| !! | ATGTGATTTTCCCTTTGAAA+TGG | - | chr3.2:77114112-77114131 | None:intergenic | 30.0% |
| !!! | TGTGATTTTCCCTTTGAAAT+GGG | - | chr3.2:77114111-77114130 | None:intergenic | 30.0% |
| !!! | TTTTCAACTTCTAGCTTGAA+AGG | - | chr3.2:77116252-77116271 | None:intergenic | 30.0% |
| AAACAAACAGCAGAAACAGT+TGG | + | chr3.2:77116269-77116288 | MS.gene06909:intron | 35.0% | |
| AAAGCAAAATTGCAAAACCG+TGG | - | chr3.2:77116617-77116636 | None:intergenic | 35.0% | |
| AACAAACAGCAGAAACAGTT+GGG | + | chr3.2:77116270-77116289 | MS.gene06909:intron | 35.0% | |
| AAGCAAAATTGCAAAACCGT+GGG | - | chr3.2:77116616-77116635 | None:intergenic | 35.0% | |
| AATGGAAAATGTTGCGATCT+GGG | + | chr3.2:77116143-77116162 | MS.gene06909:intron | 35.0% | |
| AGAATAAGGTGAAGATGTCA+CGG | + | chr3.2:77114067-77114086 | MS.gene06909:CDS | 35.0% | |
| AGGTAGTGAAAGTCATCTTT+CGG | - | chr3.2:77116298-77116317 | None:intergenic | 35.0% | |
| AGTTCTATAGGAAGAAGTGA+AGG | - | chr3.2:77113947-77113966 | None:intergenic | 35.0% | |
| ATAAAAGAGTTGGAGGTCAT+GGG | - | chr3.2:77115069-77115088 | None:intergenic | 35.0% | |
| ATAATAATGCAGAGCAGTTG+AGG | + | chr3.2:77115975-77115994 | MS.gene06909:intron | 35.0% | |
| ATTGAAATCATGGTTTGAGG+TGG | - | chr3.2:77113742-77113761 | None:intergenic | 35.0% | |
| CAAAGGGAAAATCACATTTG+TGG | + | chr3.2:77114115-77114134 | MS.gene06909:CDS | 35.0% | |
| CAATACAGTTAGAACAACCT+TGG | + | chr3.2:77113825-77113844 | MS.gene06909:CDS | 35.0% | |
| CCCTACACTTATGCAAATAA+TGG | + | chr3.2:77116218-77116237 | MS.gene06909:intron | 35.0% | |
| CTAGGTAGTAAGAAATTGGT+AGG | + | chr3.2:77115560-77115579 | MS.gene06909:intron | 35.0% | |
| GATTAATAAGGAAGGAGATG+AGG | + | chr3.2:77114023-77114042 | MS.gene06909:CDS | 35.0% | |
| GGAAAGAAACACAGAGAAAA+TGG | + | chr3.2:77116776-77116795 | MS.gene06909:CDS | 35.0% | |
| GGAATTGAAATCATGGTTTG+AGG | - | chr3.2:77113745-77113764 | None:intergenic | 35.0% | |
| GTGGCCACCAAATTTATAAA+AGG | + | chr3.2:77116085-77116104 | MS.gene06909:intron | 35.0% | |
| TAATGGAAAATGTTGCGATC+TGG | + | chr3.2:77116142-77116161 | MS.gene06909:intron | 35.0% | |
| TACCGACAGAATATTATAGC+AGG | - | chr3.2:77115518-77115537 | None:intergenic | 35.0% | |
| TAGTTGAGTTATCCAAACAC+TGG | + | chr3.2:77115121-77115140 | MS.gene06909:intron | 35.0% | |
| TTATGATAGCTTCAAGCAAG+TGG | + | chr3.2:77116738-77116757 | MS.gene06909:CDS | 35.0% | |
| TTCTTCCTATAGAACTCCAA+GGG | + | chr3.2:77113951-77113970 | MS.gene06909:CDS | 35.0% | |
| TTGCTTATATTAGTGATCGG+AGG | + | chr3.2:77114394-77114413 | MS.gene06909:intron | 35.0% | |
| ! | AACTCAACTAGTTTGAGACT+AGG | - | chr3.2:77115111-77115130 | None:intergenic | 35.0% |
| ! | ACTCAACTAGTTTGAGACTA+GGG | - | chr3.2:77115110-77115129 | None:intergenic | 35.0% |
| ! | GAATCTTTTAATACTCCCTC+CGG | + | chr3.2:77114660-77114679 | MS.gene06909:intron | 35.0% |
| ! | TAACCATTTTGGGCTAATTG+CGG | + | chr3.2:77115478-77115497 | MS.gene06909:intron | 35.0% |
| !!! | TGAGGGTAGTTTTGACTTTT+CGG | + | chr3.2:77114041-77114060 | MS.gene06909:CDS | 35.0% |
| ATAGAACTCCAAGGGAAAAC+TGG | + | chr3.2:77113959-77113978 | MS.gene06909:CDS | 40.0% | |
| ATAGGAAGAAGTGAAGGACA+TGG | - | chr3.2:77113941-77113960 | None:intergenic | 40.0% | |
| CACCTACAACTGTGTTAGAT+GGG | + | chr3.2:77113899-77113918 | MS.gene06909:CDS | 40.0% | |
| CATAAAAGAGTTGGAGGTCA+TGG | - | chr3.2:77115070-77115089 | None:intergenic | 40.0% | |
| CTTCTTCCTATAGAACTCCA+AGG | + | chr3.2:77113950-77113969 | MS.gene06909:CDS | 40.0% | |
| GAAAGATGACTTTCACTACC+TGG | + | chr3.2:77116297-77116316 | MS.gene06909:intron | 40.0% | |
| GAATAAGGTGAAGATGTCAC+GGG | + | chr3.2:77114068-77114087 | MS.gene06909:CDS | 40.0% | |
| GAGAGTGACCATTTATAGAC+TGG | + | chr3.2:77114557-77114576 | MS.gene06909:intron | 40.0% | |
| GCTTCCAAAAATAGCAACCT+AGG | - | chr3.2:77113859-77113878 | None:intergenic | 40.0% | |
| GTTGGAGGTCATAAAAGAGT+TGG | - | chr3.2:77115079-77115098 | None:intergenic | 40.0% | |
| TATCATAAATGCTTGCCTGC+AGG | - | chr3.2:77116726-77116745 | None:intergenic | 40.0% | |
| TCACCTACAACTGTGTTAGA+TGG | + | chr3.2:77113898-77113917 | MS.gene06909:CDS | 40.0% | |
| TCCAAAAATAGCAACCTAGG+AGG | - | chr3.2:77113856-77113875 | None:intergenic | 40.0% | |
| TCTAACACAGTTGTAGGTGA+AGG | - | chr3.2:77113898-77113917 | None:intergenic | 40.0% | |
| TGAAGGAACATCAACCTTGT+TGG | - | chr3.2:77113881-77113900 | None:intergenic | 40.0% | |
| TGGAAAGAGAAAACTTTGCG+AGG | + | chr3.2:77116571-77116590 | MS.gene06909:intron | 40.0% | |
| ! | GTTTTCCCTTGGAGTTCTAT+AGG | - | chr3.2:77113959-77113978 | None:intergenic | 40.0% |
| ! | TGTATTGTCGAGCTCTGATT+GGG | - | chr3.2:77113812-77113831 | None:intergenic | 40.0% |
| ! | TTCAATTCCTTTCAAGTGGG+AGG | + | chr3.2:77113756-77113775 | MS.gene06909:CDS | 40.0% |
| ! | TTGGAATTCCAGTTTTCCCT+TGG | - | chr3.2:77113970-77113989 | None:intergenic | 40.0% |
| !! | ATTCCAATTTTGGGTCTAGC+AGG | + | chr3.2:77113983-77114002 | MS.gene06909:CDS | 40.0% |
| !!! | CATGTTTTTTTCCTGAAGCC+AGG | - | chr3.2:77116318-77116337 | None:intergenic | 40.0% |
| !!! | GAGGGTAGTTTTGACTTTTC+GGG | + | chr3.2:77114042-77114061 | MS.gene06909:CDS | 40.0% |
| !!! | GCTATTTTTGGAAGCCAACA+AGG | + | chr3.2:77113864-77113883 | MS.gene06909:CDS | 40.0% |
| !!! | TGACTTTTCGGGTCAGAATA+AGG | + | chr3.2:77114053-77114072 | MS.gene06909:CDS | 40.0% |
| ACTAGGGCTAAAAGAGTTGG+AGG | - | chr3.2:77115094-77115113 | None:intergenic | 45.0% | |
| AGGAGGAAGTCCCATTTCAA+AGG | + | chr3.2:77114098-77114117 | MS.gene06909:CDS | 45.0% | |
| CATTGTGTATACTACTGGGG+AGG | + | chr3.2:77116638-77116657 | MS.gene06909:intron | 45.0% | |
| CTCTTATAAATGGGACCGGA+GGG | - | chr3.2:77114678-77114697 | None:intergenic | 45.0% | |
| GAGACTAGGGCTAAAAGAGT+TGG | - | chr3.2:77115097-77115116 | None:intergenic | 45.0% | |
| GGAGGAAGTCCCATTTCAAA+GGG | + | chr3.2:77114099-77114118 | MS.gene06909:CDS | 45.0% | |
| GGAGGTCATAAAAGAGTTGG+AGG | - | chr3.2:77115076-77115095 | None:intergenic | 45.0% | |
| GTAGGTAAGATGACTGTGCT+GGG | + | chr3.2:77115628-77115647 | MS.gene06909:intron | 45.0% | |
| TCTCTTATAAATGGGACCGG+AGG | - | chr3.2:77114679-77114698 | None:intergenic | 45.0% | |
| TGTAGGTAAGATGACTGTGC+TGG | + | chr3.2:77115627-77115646 | MS.gene06909:intron | 45.0% | |
| TTTCTTTCCTGCGTCTCCAA+GGG | - | chr3.2:77116765-77116784 | None:intergenic | 45.0% | |
| ! | CTGTATTGTCGAGCTCTGAT+TGG | - | chr3.2:77113813-77113832 | None:intergenic | 45.0% |
| !!! | GCCTCCTAGGTTGCTATTTT+TGG | + | chr3.2:77113852-77113871 | MS.gene06909:CDS | 45.0% |
| !!! | AATTATATATATTTTTTGAA+AGG | + | chr3.2:77114921-77114940 | MS.gene06909:intron | 5.0% |
| AAGAAGTGAAGGACATGGCC+CGG | - | chr3.2:77113936-77113955 | None:intergenic | 50.0% | |
| CCACCTGCTAGACCCAAAAT+TGG | - | chr3.2:77113989-77114008 | None:intergenic | 50.0% | |
| GACTTTCACTACCTGGCTTC+AGG | + | chr3.2:77116304-77116323 | MS.gene06909:intron | 50.0% | |
| GGCCCATCTAACACAGTTGT+AGG | - | chr3.2:77113904-77113923 | None:intergenic | 50.0% | |
| GGTCCGCAATTAGCCCAAAA+TGG | - | chr3.2:77115484-77115503 | None:intergenic | 50.0% | |
| GTGTTAGATGGGCCTTACGT+GGG | + | chr3.2:77113910-77113929 | MS.gene06909:CDS | 50.0% | |
| GTTTCTTTCCTGCGTCTCCA+AGG | - | chr3.2:77116766-77116785 | None:intergenic | 50.0% | |
| TGTGTTAGATGGGCCTTACG+TGG | + | chr3.2:77113909-77113928 | MS.gene06909:CDS | 50.0% | |
| ! | AAGATGTCACGGGCTGCTAA+AGG | + | chr3.2:77114078-77114097 | MS.gene06909:CDS | 50.0% |
| ! | CATGGTTTGAGGTGGTGACA+TGG | - | chr3.2:77113734-77113753 | None:intergenic | 50.0% |
| !! | CCAATTTTGGGTCTAGCAGG+TGG | + | chr3.2:77113986-77114005 | MS.gene06909:CDS | 50.0% |
| CAACCTAGGAGGCAGTTCCA+AGG | - | chr3.2:77113845-77113864 | None:intergenic | 55.0% | |
| CAACCTTGGAACTGCCTCCT+AGG | + | chr3.2:77113839-77113858 | MS.gene06909:CDS | 55.0% | |
| CTAGCAGGTGGAGTGGTTTC+AGG | + | chr3.2:77113998-77114017 | MS.gene06909:CDS | 55.0% | |
| GCTTCAAGCAAGTGGTCCCT+TGG | + | chr3.2:77116746-77116765 | MS.gene06909:CDS | 55.0% | |
| GGTGCTTCCTCCCACTTGAA+AGG | - | chr3.2:77113766-77113785 | None:intergenic | 55.0% | |
| TTTGGGTCTAGCAGGTGGAG+TGG | + | chr3.2:77113991-77114010 | MS.gene06909:CDS | 55.0% | |
| ! | ATGTCACGGGCTGCTAAAGG+AGG | + | chr3.2:77114081-77114100 | MS.gene06909:CDS | 55.0% |
| ! | GATTGGGTGTGGTAGTGCCT+AGG | - | chr3.2:77113796-77113815 | None:intergenic | 55.0% |
| ! | TGCAGAGCAGTTGAGGCGTT+AGG | + | chr3.2:77115982-77116001 | MS.gene06909:intron | 55.0% |
| ! | TGTCGAGCTCTGATTGGGTG+TGG | - | chr3.2:77113807-77113826 | None:intergenic | 55.0% |
| !! | TCAAGTGGGAGGAAGCACCA+GGG | + | chr3.2:77113767-77113786 | MS.gene06909:CDS | 55.0% |
| !! | TTCAAGTGGGAGGAAGCACC+AGG | + | chr3.2:77113766-77113785 | MS.gene06909:CDS | 55.0% |
| AAGTGGTCCCTTGGAGACGC+AGG | + | chr3.2:77116755-77116774 | MS.gene06909:CDS | 60.0% | |
| TAGATGGGCCTTACGTGGGC+CGG | + | chr3.2:77113914-77113933 | MS.gene06909:CDS | 60.0% | |
| ! | TGGTAGTGCCTAGGCTTCCC+TGG | - | chr3.2:77113787-77113806 | None:intergenic | 60.0% |
| !! | AGGAAGCACCAGGGAAGCCT+AGG | + | chr3.2:77113776-77113795 | MS.gene06909:CDS | 60.0% |
| AGATGGGCCTTACGTGGGCC+GGG | + | chr3.2:77113915-77113934 | MS.gene06909:CDS | 65.0% | |
| GACATGGCCCGGCCCACGTA+AGG | - | chr3.2:77113925-77113944 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77113715 | 77116822 | 77113715 | ID=MS.gene06909 |
| chr3.2 | mRNA | 77113715 | 77116822 | 77113715 | ID=MS.gene06909.t1;Parent=MS.gene06909 |
| chr3.2 | exon | 77113715 | 77114137 | 77113715 | ID=MS.gene06909.t1.exon1;Parent=MS.gene06909.t1 |
| chr3.2 | CDS | 77113715 | 77114137 | 77113715 | ID=cds.MS.gene06909.t1;Parent=MS.gene06909.t1 |
| chr3.2 | exon | 77116730 | 77116822 | 77116730 | ID=MS.gene06909.t1.exon2;Parent=MS.gene06909.t1 |
| chr3.2 | CDS | 77116730 | 77116822 | 77116730 | ID=cds.MS.gene06909.t1;Parent=MS.gene06909.t1 |
| Gene Sequence |
| Protein sequence |
