Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06907.t1 | XP_003602268.1 | 97.1 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 3.20E-88 | 334.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06907.t1 | G7J7F8 | 97.1 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.3e-88 | 334.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057114 | MS.gene06907 | 0.85322 | 2.76E-61 | -1.69E-46 |
| MS.gene057116 | MS.gene06907 | 0.816586 | 5.12E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06907 | MS.gene54540 | PPI |
| MS.gene059162 | MS.gene06907 | PPI |
| MS.gene54540 | MS.gene06907 | PPI |
| MS.gene059161 | MS.gene06907 | PPI |
| MS.gene06907 | MS.gene31640 | PPI |
| MS.gene013579 | MS.gene06907 | PPI |
| MS.gene057114 | MS.gene06907 | PPI |
| MS.gene059160 | MS.gene06907 | PPI |
| MS.gene057116 | MS.gene06907 | PPI |
| MS.gene06696 | MS.gene06907 | PPI |
| MS.gene021450 | MS.gene06907 | PPI |
| MS.gene06909 | MS.gene06907 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06907.t1 | MTR_3g091680 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 7.43e-120 | 335 |
| MS.gene06907.t1 | MTR_1g007905 | 58.286 | 175 | 59 | 5 | 1 | 162 | 36 | 209 | 1.88e-57 | 179 |
| MS.gene06907.t1 | MTR_7g117695 | 31.551 | 187 | 83 | 6 | 9 | 158 | 44 | 222 | 9.14e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06907.t1 | AT5G53030 | 37.000 | 200 | 80 | 8 | 5 | 159 | 37 | 235 | 2.37e-24 | 95.5 |
| MS.gene06907.t1 | AT4G27810 | 38.922 | 167 | 77 | 5 | 5 | 159 | 33 | 186 | 4.61e-22 | 88.2 |
| MS.gene06907.t1 | AT5G53030 | 36.216 | 185 | 76 | 7 | 5 | 148 | 37 | 220 | 6.55e-19 | 80.5 |
Find 61 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTGGAATTCCAATTT+TGG | 0.127410 | 3.2:+77126812 | MS.gene06907:CDS |
| GGAAAGAAACACAGAGAAAA+TGG | 0.227357 | 3.2:+77129615 | MS.gene06907:CDS |
| CTAGCAGGTGGAGTGGTTTC+AGG | 0.269736 | 3.2:+77126837 | MS.gene06907:CDS |
| CCACCTGCTAGACCCAAAAT+TGG | 0.283838 | 3.2:-77126825 | None:intergenic |
| TCACCTACAACTGTGTTAGA+TGG | 0.315146 | 3.2:+77126737 | MS.gene06907:CDS |
| GGATTAAATGGTGTCGGTTA+TGG | 0.318250 | 3.2:-77129642 | None:intergenic |
| ATAGAACTCCAAGGGAAAAC+TGG | 0.328757 | 3.2:+77126798 | MS.gene06907:CDS |
| TGGTTTCAGGAAGATTAATA+AGG | 0.332948 | 3.2:+77126850 | MS.gene06907:CDS |
| CTTGAAAGGAATTGAAATCA+TGG | 0.366715 | 3.2:-77126588 | None:intergenic |
| AAAGGGAAAATCACATTTGT+GGG | 0.419238 | 3.2:+77126955 | MS.gene06907:CDS |
| TGGTAGTGCCTAGGCTTCCC+TGG | 0.422749 | 3.2:-77126623 | None:intergenic |
| CAACCTTGGAACTGCCTCCT+AGG | 0.434449 | 3.2:+77126678 | MS.gene06907:CDS |
| CAAAGGGAAAATCACATTTG+TGG | 0.438574 | 3.2:+77126954 | MS.gene06907:CDS |
| TAGATGGGCCTTACGTGGGC+CGG | 0.448015 | 3.2:+77126753 | MS.gene06907:CDS |
| ATTAATAAGGAAGGAGATGA+GGG | 0.450852 | 3.2:+77126863 | MS.gene06907:CDS |
| GTTTCTTTCCTGCGTCTCCA+AGG | 0.455727 | 3.2:-77129602 | None:intergenic |
| TGAAGGAACATCAACCTTGT+TGG | 0.458738 | 3.2:-77126717 | None:intergenic |
| TTCAAGTGGGAGGAAGCACC+AGG | 0.461383 | 3.2:+77126605 | MS.gene06907:CDS |
| CTGTATTGTCGAGCTCTGAT+TGG | 0.465440 | 3.2:-77126649 | None:intergenic |
| AGATGGGCCTTACGTGGGCC+GGG | 0.475085 | 3.2:+77126754 | MS.gene06907:CDS |
| GCTTCAAGCAAGTGGTCCCT+TGG | 0.480684 | 3.2:+77129585 | MS.gene06907:CDS |
| TTTCTTTCCTGCGTCTCCAA+GGG | 0.483332 | 3.2:-77129601 | None:intergenic |
| GGAATTGAAATCATGGTTTG+AGG | 0.484375 | 3.2:-77126581 | None:intergenic |
| TTCAGGAAGATTAATAAGGA+AGG | 0.487183 | 3.2:+77126854 | MS.gene06907:CDS |
| GAAAGAAACACAGAGAAAAT+GGG | 0.492618 | 3.2:+77129616 | MS.gene06907:CDS |
| GGAGGAAGTCCCATTTCAAA+GGG | 0.501251 | 3.2:+77126938 | MS.gene06907:CDS |
| AGGAAGCACCAGGGAAGCCT+AGG | 0.504051 | 3.2:+77126615 | MS.gene06907:CDS |
| AAGATGTCACGGGCTGCTAA+AGG | 0.520498 | 3.2:+77126917 | MS.gene06907:CDS |
| GGCCCATCTAACACAGTTGT+AGG | 0.520900 | 3.2:-77126740 | None:intergenic |
| GACATGGCCCGGCCCACGTA+AGG | 0.522178 | 3.2:-77126761 | None:intergenic |
| GATTGGGTGTGGTAGTGCCT+AGG | 0.526775 | 3.2:-77126632 | None:intergenic |
| GATTAATAAGGAAGGAGATG+AGG | 0.528348 | 3.2:+77126862 | MS.gene06907:CDS |
| AGGAGGAAGTCCCATTTCAA+AGG | 0.530152 | 3.2:+77126937 | MS.gene06907:CDS |
| TGTATTGTCGAGCTCTGATT+GGG | 0.531093 | 3.2:-77126648 | None:intergenic |
| CACCTACAACTGTGTTAGAT+GGG | 0.532506 | 3.2:+77126738 | MS.gene06907:CDS |
| AAGAAGTGAAGGACATGGCC+CGG | 0.535442 | 3.2:-77126772 | None:intergenic |
| GGTGCTTCCTCCCACTTGAA+AGG | 0.541875 | 3.2:-77126602 | None:intergenic |
| TGATTTCAATTCCTTTCAAG+TGG | 0.550003 | 3.2:+77126591 | MS.gene06907:CDS |
| TTCAATTCCTTTCAAGTGGG+AGG | 0.551211 | 3.2:+77126595 | MS.gene06907:CDS |
| TTTGGGTCTAGCAGGTGGAG+TGG | 0.556268 | 3.2:+77126830 | MS.gene06907:CDS |
| TGTGTTAGATGGGCCTTACG+TGG | 0.559160 | 3.2:+77126748 | MS.gene06907:CDS |
| TTATGATAGCTTCAAGCAAG+TGG | 0.561111 | 3.2:+77129577 | MS.gene06907:CDS |
| CAATACAGTTAGAACAACCT+TGG | 0.565902 | 3.2:+77126664 | MS.gene06907:CDS |
| AAGTGGTCCCTTGGAGACGC+AGG | 0.575329 | 3.2:+77129594 | MS.gene06907:CDS |
| TCAACAACCAATAATGTCAT+CGG | 0.578794 | 3.2:+77126541 | None:intergenic |
| TCTAAAGGATTAAATGGTGT+CGG | 0.581278 | 3.2:-77129648 | None:intergenic |
| AGAATAAGGTGAAGATGTCA+CGG | 0.584256 | 3.2:+77126906 | MS.gene06907:CDS |
| GATTTCAATTCCTTTCAAGT+GGG | 0.605733 | 3.2:+77126592 | MS.gene06907:CDS |
| CTTCTTCCTATAGAACTCCA+AGG | 0.606398 | 3.2:+77126789 | MS.gene06907:CDS |
| TGTCGAGCTCTGATTGGGTG+TGG | 0.614054 | 3.2:-77126643 | None:intergenic |
| CATGGTTTGAGGTGGTGACA+TGG | 0.621041 | 3.2:-77126570 | None:intergenic |
| ATGTCACGGGCTGCTAAAGG+AGG | 0.635685 | 3.2:+77126920 | MS.gene06907:CDS |
| CAACCTAGGAGGCAGTTCCA+AGG | 0.636697 | 3.2:-77126681 | None:intergenic |
| GAATAAGGTGAAGATGTCAC+GGG | 0.637192 | 3.2:+77126907 | MS.gene06907:CDS |
| TCTAACACAGTTGTAGGTGA+AGG | 0.645082 | 3.2:-77126734 | None:intergenic |
| TTCTTCCTATAGAACTCCAA+GGG | 0.650470 | 3.2:+77126790 | MS.gene06907:CDS |
| GTGTTAGATGGGCCTTACGT+GGG | 0.653028 | 3.2:+77126749 | MS.gene06907:CDS |
| AGTTCTATAGGAAGAAGTGA+AGG | 0.661579 | 3.2:-77126783 | None:intergenic |
| ATTGAAATCATGGTTTGAGG+TGG | 0.684990 | 3.2:-77126578 | None:intergenic |
| ATAGGAAGAAGTGAAGGACA+TGG | 0.705802 | 3.2:-77126777 | None:intergenic |
| TCAAGTGGGAGGAAGCACCA+GGG | 0.732644 | 3.2:+77126606 | MS.gene06907:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAACTTCAAATAATTA+TGG | - | chr3.2:77127820-77127839 | None:intergenic | 10.0% |
| !! | AGACTAAAAATATATTTAAT+AGG | - | chr3.2:77127797-77127816 | None:intergenic | 10.0% |
| !!! | AGTATTTGTTAAAAAAATAA+TGG | + | chr3.2:77128964-77128983 | MS.gene06907:intron | 10.0% |
| !!! | TTTAATGATAAAATTTTCTT+TGG | + | chr3.2:77129390-77129409 | MS.gene06907:intron | 10.0% |
| !! | TACATATGTAATAAAATTCT+AGG | - | chr3.2:77128114-77128133 | None:intergenic | 15.0% |
| !! | TTGAACTTTAAATATAATAC+AGG | + | chr3.2:77129205-77129224 | MS.gene06907:intron | 15.0% |
| !!! | ACTTTAACCTTTTATAAATT+TGG | - | chr3.2:77128934-77128953 | None:intergenic | 15.0% |
| !!! | GTCATTTTTTAAAACAAAAA+AGG | + | chr3.2:77129246-77129265 | MS.gene06907:intron | 15.0% |
| !!! | TAAGTATTTCTATATATAGT+TGG | + | chr3.2:77127370-77127389 | MS.gene06907:intron | 15.0% |
| !!! | TTTTGATATTTTTTATACTC+TGG | + | chr3.2:77128085-77128104 | MS.gene06907:intron | 15.0% |
| !! | AAAAGAGAGAATGATAATTT+AGG | - | chr3.2:77127304-77127323 | None:intergenic | 20.0% |
| !! | AAAATGAAAGACAAATTTGA+TGG | + | chr3.2:77127334-77127353 | MS.gene06907:intron | 20.0% |
| !! | AAACATTAGTGAGATTAAAA+AGG | + | chr3.2:77128062-77128081 | MS.gene06907:intron | 20.0% |
| !! | AAAGAATGATGAAAAATTGT+AGG | + | chr3.2:77128449-77128468 | MS.gene06907:intron | 20.0% |
| !! | ATGTATGTAGTCTTTATTAT+AGG | - | chr3.2:77127182-77127201 | None:intergenic | 20.0% |
| !!! | AAATTAGTTTAAGGACTATT+TGG | - | chr3.2:77127264-77127283 | None:intergenic | 20.0% |
| !!! | AAGTGTATGCAAATATTTTA+TGG | - | chr3.2:77129343-77129362 | None:intergenic | 20.0% |
| !!! | AATAATAATTTTATACCTGC+AGG | + | chr3.2:77129547-77129566 | MS.gene06907:intron | 20.0% |
| !!! | AATTATCATGATCATTTTTG+TGG | + | chr3.2:77128735-77128754 | MS.gene06907:intron | 20.0% |
| !!! | AGTCAATTTTCTCTTATAAA+TGG | - | chr3.2:77127527-77127546 | None:intergenic | 20.0% |
| !!! | ATATTTTTTTTTTGAACCCA+CGG | + | chr3.2:77129436-77129455 | MS.gene06907:intron | 20.0% |
| !!! | ATTATAAGTGATAGTGATAT+TGG | + | chr3.2:77129009-77129028 | MS.gene06907:intron | 20.0% |
| !!! | ATTTTGCTTATATTAGTGAT+CGG | + | chr3.2:77127230-77127249 | MS.gene06907:intron | 20.0% |
| !!! | GATAGATTCAAATTAGTTTA+AGG | - | chr3.2:77127273-77127292 | None:intergenic | 20.0% |
| !!! | GTCAATTTTCTCTTATAAAT+GGG | - | chr3.2:77127526-77127545 | None:intergenic | 20.0% |
| !!! | TATCACTGATTTAATTAGTT+AGG | + | chr3.2:77129507-77129526 | MS.gene06907:intron | 20.0% |
| !!! | TTAACCTTTTATAAATTTGG+TGG | - | chr3.2:77128931-77128950 | None:intergenic | 20.0% |
| !!! | TTCATAATATGAAGTTTTGT+CGG | - | chr3.2:77128217-77128236 | None:intergenic | 20.0% |
| !!! | TTTCTTTTACTAACCATTTT+GGG | + | chr3.2:77128307-77128326 | MS.gene06907:intron | 20.0% |
| !!! | TTTTCTTTTACTAACCATTT+TGG | + | chr3.2:77128306-77128325 | MS.gene06907:intron | 20.0% |
| !!! | TTTTTTAACAAATACTGTAC+TGG | - | chr3.2:77128960-77128979 | None:intergenic | 20.0% |
| !!! | TTTTTTCATAATCAAACTAG+TGG | + | chr3.2:77128239-77128258 | MS.gene06907:intron | 20.0% |
| ! | ACCTAGAGTTAGAAATTAAA+TGG | - | chr3.2:77128385-77128404 | None:intergenic | 25.0% |
| ! | ATCGAATATGATAAAAGCAA+AGG | - | chr3.2:77128904-77128923 | None:intergenic | 25.0% |
| ! | CCTAGAGTTAGAAATTAAAT+GGG | - | chr3.2:77128384-77128403 | None:intergenic | 25.0% |
| ! | CTAATTTGAATCTATCAAGA+TGG | + | chr3.2:77127277-77127296 | MS.gene06907:intron | 25.0% |
| ! | GTAAATTGTCTCTTGTAAAT+AGG | + | chr3.2:77127625-77127644 | MS.gene06907:intron | 25.0% |
| ! | TAAAAGTCTAAACTCTAAAC+TGG | - | chr3.2:77128697-77128716 | None:intergenic | 25.0% |
| ! | TAGTATTGTGTGAAAATCAT+TGG | + | chr3.2:77128671-77128690 | MS.gene06907:intron | 25.0% |
| ! | TCGAATATGATAAAAGCAAA+GGG | - | chr3.2:77128903-77128922 | None:intergenic | 25.0% |
| !! | AAAACTGGAATTCCAATTTT+GGG | + | chr3.2:77126813-77126832 | MS.gene06907:CDS | 25.0% |
| !! | CTTTTGCTTATATTAGTGAT+TGG | - | chr3.2:77127121-77127140 | None:intergenic | 25.0% |
| !! | TGATTTTCACACAATACTAA+TGG | - | chr3.2:77128670-77128689 | None:intergenic | 25.0% |
| !! | TTTTCATTGTGTATACTACT+GGG | + | chr3.2:77129473-77129492 | MS.gene06907:intron | 25.0% |
| !!! | ATGATCATTTTTGTGGAAAT+TGG | + | chr3.2:77128742-77128761 | MS.gene06907:intron | 25.0% |
| !!! | TATATTGATGCAAAAGCATT+TGG | - | chr3.2:77127034-77127053 | None:intergenic | 25.0% |
| !!! | TCATAATATGAAGTTTTGTC+GGG | - | chr3.2:77128216-77128235 | None:intergenic | 25.0% |
| AAAGGGAAAATCACATTTGT+GGG | + | chr3.2:77126955-77126974 | MS.gene06907:CDS | 30.0% | |
| AACTAGCAATGACTAACAAA+TGG | - | chr3.2:77128014-77128033 | None:intergenic | 30.0% | |
| AACTCTAGGTAGTAAGAAAT+TGG | + | chr3.2:77128395-77128414 | MS.gene06907:intron | 30.0% | |
| ATACTAATGGCAACAAAAAG+AGG | - | chr3.2:77128657-77128676 | None:intergenic | 30.0% | |
| ATTAATAAGGAAGGAGATGA+GGG | + | chr3.2:77126863-77126882 | MS.gene06907:CDS | 30.0% | |
| CACAATTATAGCATCTACTT+TGG | + | chr3.2:77128543-77128562 | MS.gene06907:intron | 30.0% | |
| CCATAAATCCAGTCTATAAA+TGG | - | chr3.2:77127407-77127426 | None:intergenic | 30.0% | |
| CCATTATTTGCATAAGTGTA+GGG | - | chr3.2:77129060-77129079 | None:intergenic | 30.0% | |
| CCATTTATAGACTGGATTTA+TGG | + | chr3.2:77127404-77127423 | MS.gene06907:intron | 30.0% | |
| CTTGAAAGGAATTGAAATCA+TGG | - | chr3.2:77126591-77126610 | None:intergenic | 30.0% | |
| GAAAGAAACACAGAGAAAAT+GGG | + | chr3.2:77129616-77129635 | MS.gene06907:CDS | 30.0% | |
| TACCTGCTATAATATTCTGT+CGG | + | chr3.2:77128352-77128371 | MS.gene06907:intron | 30.0% | |
| TACTAATGGCAACAAAAAGA+GGG | - | chr3.2:77128656-77128675 | None:intergenic | 30.0% | |
| TACTACTACTCTATAGCAAA+CGG | - | chr3.2:77128622-77128641 | None:intergenic | 30.0% | |
| TCAATTATTCACATAGCGTA+CGG | - | chr3.2:77127652-77127671 | None:intergenic | 30.0% | |
| TCCATTATTTGCATAAGTGT+AGG | - | chr3.2:77129061-77129080 | None:intergenic | 30.0% | |
| TGATTTCAATTCCTTTCAAG+TGG | + | chr3.2:77126591-77126610 | MS.gene06907:CDS | 30.0% | |
| TGGTTTCAGGAAGATTAATA+AGG | + | chr3.2:77126850-77126869 | MS.gene06907:CDS | 30.0% | |
| TTATAGCAGGTAAATATGCA+TGG | - | chr3.2:77128344-77128363 | None:intergenic | 30.0% | |
| TTCAGGAAGATTAATAAGGA+AGG | + | chr3.2:77126854-77126873 | MS.gene06907:CDS | 30.0% | |
| TTTCATTGTGTATACTACTG+GGG | + | chr3.2:77129474-77129493 | MS.gene06907:intron | 30.0% | |
| ! | CAAGATTTAAAACCAGTGTT+TGG | - | chr3.2:77127975-77127994 | None:intergenic | 30.0% |
| ! | CCCATTTAATTTCTAACTCT+AGG | + | chr3.2:77128381-77128400 | MS.gene06907:intron | 30.0% |
| ! | CTTTTCATTGTGTATACTAC+TGG | + | chr3.2:77129472-77129491 | MS.gene06907:intron | 30.0% |
| ! | GAAAACTGGAATTCCAATTT+TGG | + | chr3.2:77126812-77126831 | MS.gene06907:CDS | 30.0% |
| ! | GATTTCAATTCCTTTCAAGT+GGG | + | chr3.2:77126592-77126611 | MS.gene06907:CDS | 30.0% |
| ! | TGCTTTTATCATATTCGATG+TGG | + | chr3.2:77128905-77128924 | MS.gene06907:intron | 30.0% |
| ! | TTTTCTCTTATAAATGGGAC+CGG | - | chr3.2:77127521-77127540 | None:intergenic | 30.0% |
| !! | ATGTGATTTTCCCTTTGAAA+TGG | - | chr3.2:77126951-77126970 | None:intergenic | 30.0% |
| !!! | TGTGATTTTCCCTTTGAAAT+GGG | - | chr3.2:77126950-77126969 | None:intergenic | 30.0% |
| !!! | TTTTCAACTTCTAGCTTGAA+AGG | - | chr3.2:77129091-77129110 | None:intergenic | 30.0% |
| AAACAAACAGCAGAAACAGT+TGG | + | chr3.2:77129108-77129127 | MS.gene06907:intron | 35.0% | |
| AAAGCAAAATTGCAAAACCG+TGG | - | chr3.2:77129456-77129475 | None:intergenic | 35.0% | |
| AACAAACAGCAGAAACAGTT+GGG | + | chr3.2:77129109-77129128 | MS.gene06907:intron | 35.0% | |
| AAGCAAAATTGCAAAACCGT+GGG | - | chr3.2:77129455-77129474 | None:intergenic | 35.0% | |
| AATGGAAAATGTTGCGATCT+GGG | + | chr3.2:77128982-77129001 | MS.gene06907:intron | 35.0% | |
| AGAATAAGGTGAAGATGTCA+CGG | + | chr3.2:77126906-77126925 | MS.gene06907:CDS | 35.0% | |
| AGGTAGTGAAAGTCATCTTT+CGG | - | chr3.2:77129137-77129156 | None:intergenic | 35.0% | |
| AGTTCTATAGGAAGAAGTGA+AGG | - | chr3.2:77126786-77126805 | None:intergenic | 35.0% | |
| ATAAAAGAGTTGGAGGTCAT+GGG | - | chr3.2:77127908-77127927 | None:intergenic | 35.0% | |
| ATAATAATGCAGAGCAGTTG+AGG | + | chr3.2:77128814-77128833 | MS.gene06907:intron | 35.0% | |
| ATTGAAATCATGGTTTGAGG+TGG | - | chr3.2:77126581-77126600 | None:intergenic | 35.0% | |
| CAAAGGGAAAATCACATTTG+TGG | + | chr3.2:77126954-77126973 | MS.gene06907:CDS | 35.0% | |
| CAATACAGTTAGAACAACCT+TGG | + | chr3.2:77126664-77126683 | MS.gene06907:CDS | 35.0% | |
| CCCTACACTTATGCAAATAA+TGG | + | chr3.2:77129057-77129076 | MS.gene06907:intron | 35.0% | |
| CTAGGTAGTAAGAAATTGGT+AGG | + | chr3.2:77128399-77128418 | MS.gene06907:intron | 35.0% | |
| GATTAATAAGGAAGGAGATG+AGG | + | chr3.2:77126862-77126881 | MS.gene06907:CDS | 35.0% | |
| GGAAAGAAACACAGAGAAAA+TGG | + | chr3.2:77129615-77129634 | MS.gene06907:CDS | 35.0% | |
| GGAATTGAAATCATGGTTTG+AGG | - | chr3.2:77126584-77126603 | None:intergenic | 35.0% | |
| GTGGCCACCAAATTTATAAA+AGG | + | chr3.2:77128924-77128943 | MS.gene06907:intron | 35.0% | |
| TAATGGAAAATGTTGCGATC+TGG | + | chr3.2:77128981-77129000 | MS.gene06907:intron | 35.0% | |
| TACCGACAGAATATTATAGC+AGG | - | chr3.2:77128357-77128376 | None:intergenic | 35.0% | |
| TAGTTGAGTTATCCAAACAC+TGG | + | chr3.2:77127960-77127979 | MS.gene06907:intron | 35.0% | |
| TTATGATAGCTTCAAGCAAG+TGG | + | chr3.2:77129577-77129596 | MS.gene06907:CDS | 35.0% | |
| TTCTTCCTATAGAACTCCAA+GGG | + | chr3.2:77126790-77126809 | MS.gene06907:CDS | 35.0% | |
| TTGCTTATATTAGTGATCGG+AGG | + | chr3.2:77127233-77127252 | MS.gene06907:intron | 35.0% | |
| ! | AACTCAACTAGTTTGAGACT+AGG | - | chr3.2:77127950-77127969 | None:intergenic | 35.0% |
| ! | ACTCAACTAGTTTGAGACTA+GGG | - | chr3.2:77127949-77127968 | None:intergenic | 35.0% |
| ! | GAATCTTTTAATACTCCCTC+CGG | + | chr3.2:77127499-77127518 | MS.gene06907:intron | 35.0% |
| ! | TAACCATTTTGGGCTAATTG+CGG | + | chr3.2:77128317-77128336 | MS.gene06907:intron | 35.0% |
| !!! | TGAGGGTAGTTTTGACTTTT+CGG | + | chr3.2:77126880-77126899 | MS.gene06907:CDS | 35.0% |
| ATAGAACTCCAAGGGAAAAC+TGG | + | chr3.2:77126798-77126817 | MS.gene06907:CDS | 40.0% | |
| ATAGGAAGAAGTGAAGGACA+TGG | - | chr3.2:77126780-77126799 | None:intergenic | 40.0% | |
| CACCTACAACTGTGTTAGAT+GGG | + | chr3.2:77126738-77126757 | MS.gene06907:CDS | 40.0% | |
| CATAAAAGAGTTGGAGGTCA+TGG | - | chr3.2:77127909-77127928 | None:intergenic | 40.0% | |
| CTTCTTCCTATAGAACTCCA+AGG | + | chr3.2:77126789-77126808 | MS.gene06907:CDS | 40.0% | |
| GAAAGATGACTTTCACTACC+TGG | + | chr3.2:77129136-77129155 | MS.gene06907:intron | 40.0% | |
| GAATAAGGTGAAGATGTCAC+GGG | + | chr3.2:77126907-77126926 | MS.gene06907:CDS | 40.0% | |
| GAGAGTGACCATTTATAGAC+TGG | + | chr3.2:77127396-77127415 | MS.gene06907:intron | 40.0% | |
| GCTTCCAAAAATAGCAACCT+AGG | - | chr3.2:77126698-77126717 | None:intergenic | 40.0% | |
| GTTGGAGGTCATAAAAGAGT+TGG | - | chr3.2:77127918-77127937 | None:intergenic | 40.0% | |
| TATCATAAATGCTTGCCTGC+AGG | - | chr3.2:77129565-77129584 | None:intergenic | 40.0% | |
| TCACCTACAACTGTGTTAGA+TGG | + | chr3.2:77126737-77126756 | MS.gene06907:CDS | 40.0% | |
| TCCAAAAATAGCAACCTAGG+AGG | - | chr3.2:77126695-77126714 | None:intergenic | 40.0% | |
| TCTAACACAGTTGTAGGTGA+AGG | - | chr3.2:77126737-77126756 | None:intergenic | 40.0% | |
| TGAAGGAACATCAACCTTGT+TGG | - | chr3.2:77126720-77126739 | None:intergenic | 40.0% | |
| TGGAAAGAGAAAACTTTGCG+AGG | + | chr3.2:77129410-77129429 | MS.gene06907:intron | 40.0% | |
| ! | GTTTTCCCTTGGAGTTCTAT+AGG | - | chr3.2:77126798-77126817 | None:intergenic | 40.0% |
| ! | TGTATTGTCGAGCTCTGATT+GGG | - | chr3.2:77126651-77126670 | None:intergenic | 40.0% |
| ! | TTCAATTCCTTTCAAGTGGG+AGG | + | chr3.2:77126595-77126614 | MS.gene06907:CDS | 40.0% |
| ! | TTGGAATTCCAGTTTTCCCT+TGG | - | chr3.2:77126809-77126828 | None:intergenic | 40.0% |
| !! | ATTCCAATTTTGGGTCTAGC+AGG | + | chr3.2:77126822-77126841 | MS.gene06907:CDS | 40.0% |
| !!! | CATGTTTTTTTCCTGAAGCC+AGG | - | chr3.2:77129157-77129176 | None:intergenic | 40.0% |
| !!! | GAGGGTAGTTTTGACTTTTC+GGG | + | chr3.2:77126881-77126900 | MS.gene06907:CDS | 40.0% |
| !!! | GCTATTTTTGGAAGCCAACA+AGG | + | chr3.2:77126703-77126722 | MS.gene06907:CDS | 40.0% |
| !!! | TGACTTTTCGGGTCAGAATA+AGG | + | chr3.2:77126892-77126911 | MS.gene06907:CDS | 40.0% |
| ACTAGGGCTAAAAGAGTTGG+AGG | - | chr3.2:77127933-77127952 | None:intergenic | 45.0% | |
| AGGAGGAAGTCCCATTTCAA+AGG | + | chr3.2:77126937-77126956 | MS.gene06907:CDS | 45.0% | |
| CATTGTGTATACTACTGGGG+AGG | + | chr3.2:77129477-77129496 | MS.gene06907:intron | 45.0% | |
| CTCTTATAAATGGGACCGGA+GGG | - | chr3.2:77127517-77127536 | None:intergenic | 45.0% | |
| GAGACTAGGGCTAAAAGAGT+TGG | - | chr3.2:77127936-77127955 | None:intergenic | 45.0% | |
| GGAGGAAGTCCCATTTCAAA+GGG | + | chr3.2:77126938-77126957 | MS.gene06907:CDS | 45.0% | |
| GGAGGTCATAAAAGAGTTGG+AGG | - | chr3.2:77127915-77127934 | None:intergenic | 45.0% | |
| GTAGGTAAGATGACTGTGCT+GGG | + | chr3.2:77128467-77128486 | MS.gene06907:intron | 45.0% | |
| TCTCTTATAAATGGGACCGG+AGG | - | chr3.2:77127518-77127537 | None:intergenic | 45.0% | |
| TGTAGGTAAGATGACTGTGC+TGG | + | chr3.2:77128466-77128485 | MS.gene06907:intron | 45.0% | |
| TTTCTTTCCTGCGTCTCCAA+GGG | - | chr3.2:77129604-77129623 | None:intergenic | 45.0% | |
| ! | CTGTATTGTCGAGCTCTGAT+TGG | - | chr3.2:77126652-77126671 | None:intergenic | 45.0% |
| !!! | GCCTCCTAGGTTGCTATTTT+TGG | + | chr3.2:77126691-77126710 | MS.gene06907:CDS | 45.0% |
| !!! | AATTATATATATTTTTTGAA+AGG | + | chr3.2:77127760-77127779 | MS.gene06907:intron | 5.0% |
| AAGAAGTGAAGGACATGGCC+CGG | - | chr3.2:77126775-77126794 | None:intergenic | 50.0% | |
| CCACCTGCTAGACCCAAAAT+TGG | - | chr3.2:77126828-77126847 | None:intergenic | 50.0% | |
| GACTTTCACTACCTGGCTTC+AGG | + | chr3.2:77129143-77129162 | MS.gene06907:intron | 50.0% | |
| GGCCCATCTAACACAGTTGT+AGG | - | chr3.2:77126743-77126762 | None:intergenic | 50.0% | |
| GGTCCGCAATTAGCCCAAAA+TGG | - | chr3.2:77128323-77128342 | None:intergenic | 50.0% | |
| GTGTTAGATGGGCCTTACGT+GGG | + | chr3.2:77126749-77126768 | MS.gene06907:CDS | 50.0% | |
| GTTTCTTTCCTGCGTCTCCA+AGG | - | chr3.2:77129605-77129624 | None:intergenic | 50.0% | |
| TGTGTTAGATGGGCCTTACG+TGG | + | chr3.2:77126748-77126767 | MS.gene06907:CDS | 50.0% | |
| ! | AAGATGTCACGGGCTGCTAA+AGG | + | chr3.2:77126917-77126936 | MS.gene06907:CDS | 50.0% |
| ! | CATGGTTTGAGGTGGTGACA+TGG | - | chr3.2:77126573-77126592 | None:intergenic | 50.0% |
| !! | CCAATTTTGGGTCTAGCAGG+TGG | + | chr3.2:77126825-77126844 | MS.gene06907:CDS | 50.0% |
| CAACCTAGGAGGCAGTTCCA+AGG | - | chr3.2:77126684-77126703 | None:intergenic | 55.0% | |
| CAACCTTGGAACTGCCTCCT+AGG | + | chr3.2:77126678-77126697 | MS.gene06907:CDS | 55.0% | |
| CTAGCAGGTGGAGTGGTTTC+AGG | + | chr3.2:77126837-77126856 | MS.gene06907:CDS | 55.0% | |
| GCTTCAAGCAAGTGGTCCCT+TGG | + | chr3.2:77129585-77129604 | MS.gene06907:CDS | 55.0% | |
| GGTGCTTCCTCCCACTTGAA+AGG | - | chr3.2:77126605-77126624 | None:intergenic | 55.0% | |
| TTTGGGTCTAGCAGGTGGAG+TGG | + | chr3.2:77126830-77126849 | MS.gene06907:CDS | 55.0% | |
| ! | ATGTCACGGGCTGCTAAAGG+AGG | + | chr3.2:77126920-77126939 | MS.gene06907:CDS | 55.0% |
| ! | GATTGGGTGTGGTAGTGCCT+AGG | - | chr3.2:77126635-77126654 | None:intergenic | 55.0% |
| ! | TGCAGAGCAGTTGAGGCGTT+AGG | + | chr3.2:77128821-77128840 | MS.gene06907:intron | 55.0% |
| ! | TGTCGAGCTCTGATTGGGTG+TGG | - | chr3.2:77126646-77126665 | None:intergenic | 55.0% |
| !! | TCAAGTGGGAGGAAGCACCA+GGG | + | chr3.2:77126606-77126625 | MS.gene06907:CDS | 55.0% |
| !! | TTCAAGTGGGAGGAAGCACC+AGG | + | chr3.2:77126605-77126624 | MS.gene06907:CDS | 55.0% |
| AAGTGGTCCCTTGGAGACGC+AGG | + | chr3.2:77129594-77129613 | MS.gene06907:CDS | 60.0% | |
| TAGATGGGCCTTACGTGGGC+CGG | + | chr3.2:77126753-77126772 | MS.gene06907:CDS | 60.0% | |
| ! | TGGTAGTGCCTAGGCTTCCC+TGG | - | chr3.2:77126626-77126645 | None:intergenic | 60.0% |
| !! | AGGAAGCACCAGGGAAGCCT+AGG | + | chr3.2:77126615-77126634 | MS.gene06907:CDS | 60.0% |
| AGATGGGCCTTACGTGGGCC+GGG | + | chr3.2:77126754-77126773 | MS.gene06907:CDS | 65.0% | |
| GACATGGCCCGGCCCACGTA+AGG | - | chr3.2:77126764-77126783 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77126554 | 77129661 | 77126554 | ID=MS.gene06907 |
| chr3.2 | mRNA | 77126554 | 77129661 | 77126554 | ID=MS.gene06907.t1;Parent=MS.gene06907 |
| chr3.2 | exon | 77126554 | 77126976 | 77126554 | ID=MS.gene06907.t1.exon1;Parent=MS.gene06907.t1 |
| chr3.2 | CDS | 77126554 | 77126976 | 77126554 | ID=cds.MS.gene06907.t1;Parent=MS.gene06907.t1 |
| chr3.2 | exon | 77129569 | 77129661 | 77129569 | ID=MS.gene06907.t1.exon2;Parent=MS.gene06907.t1 |
| chr3.2 | CDS | 77129569 | 77129661 | 77129569 | ID=cds.MS.gene06907.t1;Parent=MS.gene06907.t1 |
| Gene Sequence |
| Protein sequence |
