Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014682.t1 | XP_013461938.1 | 99.8 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 1.80E-278 | 968 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014682.t1 | Q9LV21 | 85.8 | 536 | 72 | 1 | 1 | 532 | 1 | 536 | 5.5e-252 | 871.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014682.t1 | A0A072V3N8 | 99.8 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 1.3e-278 | 968.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014682.t1 | MTR_3g109925 | 99.812 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1070 |
| MS.gene014682.t1 | MTR_3g109925 | 85.150 | 532 | 22 | 5 | 1 | 532 | 1 | 475 | 0.0 | 877 |
| MS.gene014682.t1 | MTR_8g105970 | 73.740 | 377 | 39 | 7 | 124 | 495 | 32 | 353 | 0.0 | 520 |
| MS.gene014682.t1 | MTR_3g086330 | 37.500 | 512 | 307 | 7 | 24 | 530 | 28 | 531 | 1.62e-103 | 321 |
| MS.gene014682.t1 | MTR_7g113470 | 34.816 | 517 | 318 | 7 | 20 | 530 | 14 | 517 | 3.12e-89 | 284 |
| MS.gene014682.t1 | MTR_7g067470 | 35.029 | 511 | 313 | 7 | 26 | 530 | 20 | 517 | 1.79e-88 | 282 |
| MS.gene014682.t1 | MTR_8g088270 | 34.476 | 525 | 316 | 9 | 24 | 529 | 19 | 534 | 1.03e-84 | 273 |
| MS.gene014682.t1 | MTR_5g087560 | 32.877 | 511 | 323 | 8 | 28 | 529 | 27 | 526 | 2.59e-79 | 259 |
| MS.gene014682.t1 | MTR_2g013540 | 30.528 | 511 | 344 | 7 | 25 | 530 | 20 | 524 | 7.56e-73 | 242 |
| MS.gene014682.t1 | MTR_6g032870 | 28.571 | 511 | 351 | 5 | 23 | 529 | 20 | 520 | 7.51e-69 | 231 |
| MS.gene014682.t1 | MTR_1g030650 | 27.626 | 514 | 358 | 5 | 23 | 532 | 23 | 526 | 1.49e-68 | 230 |
| MS.gene014682.t1 | MTR_7g406870 | 27.519 | 516 | 347 | 10 | 29 | 529 | 22 | 525 | 1.04e-50 | 182 |
| MS.gene014682.t1 | MTR_2g013540 | 28.534 | 382 | 259 | 8 | 154 | 530 | 3 | 375 | 3.07e-35 | 137 |
| MS.gene014682.t1 | MTR_4g057020 | 57.658 | 111 | 13 | 1 | 294 | 404 | 54 | 130 | 9.03e-29 | 111 |
| MS.gene014682.t1 | MTR_7g406870 | 25.647 | 425 | 289 | 10 | 120 | 529 | 1 | 413 | 1.24e-27 | 115 |
| MS.gene014682.t1 | MTR_8g010750 | 25.366 | 410 | 206 | 12 | 27 | 383 | 30 | 392 | 3.81e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014682.t1 | AT3G18190 | 87.873 | 536 | 61 | 1 | 1 | 532 | 1 | 536 | 0.0 | 964 |
| MS.gene014682.t1 | AT1G24510 | 38.447 | 515 | 304 | 7 | 21 | 530 | 25 | 531 | 2.13e-104 | 323 |
| MS.gene014682.t1 | AT1G24510 | 37.553 | 474 | 283 | 7 | 62 | 530 | 13 | 478 | 1.79e-89 | 283 |
| MS.gene014682.t1 | AT1G24510 | 36.933 | 463 | 279 | 7 | 73 | 530 | 1 | 455 | 9.21e-84 | 268 |
| MS.gene014682.t1 | AT3G20050 | 33.898 | 531 | 323 | 9 | 18 | 529 | 13 | 534 | 9.03e-83 | 268 |
| MS.gene014682.t1 | AT5G20890 | 33.656 | 517 | 324 | 7 | 20 | 530 | 14 | 517 | 6.74e-82 | 265 |
| MS.gene014682.t1 | AT3G11830 | 32.485 | 511 | 325 | 7 | 28 | 529 | 27 | 526 | 1.74e-76 | 251 |
| MS.gene014682.t1 | AT3G11830 | 32.485 | 511 | 323 | 8 | 28 | 529 | 27 | 524 | 1.02e-74 | 247 |
| MS.gene014682.t1 | AT3G03960 | 28.817 | 524 | 357 | 7 | 14 | 532 | 17 | 529 | 1.01e-71 | 239 |
| MS.gene014682.t1 | AT5G26360 | 31.311 | 511 | 340 | 7 | 25 | 530 | 20 | 524 | 2.55e-71 | 238 |
| MS.gene014682.t1 | AT5G16070 | 29.594 | 517 | 324 | 13 | 30 | 520 | 23 | 525 | 6.90e-53 | 188 |
| MS.gene014682.t1 | AT3G02530 | 28.794 | 514 | 333 | 11 | 30 | 520 | 23 | 526 | 3.28e-51 | 183 |
Find 119 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAGATTGTGAAGATTTC+TGG | 0.204894 | 3.1:+87307376 | MS.gene014682:CDS |
| TGTGAAGATTTCTGGTATTA+AGG | 0.209465 | 3.1:+87307384 | MS.gene014682:CDS |
| TCTTGCTAAAGCTAAGATTT+TGG | 0.234466 | 3.1:+87307216 | MS.gene014682:CDS |
| GATTTCTGGTATTAAGGATA+TGG | 0.239423 | 3.1:+87307390 | MS.gene014682:CDS |
| ATCGTCTTTGCGTTTGTTAT+CGG | 0.257624 | 3.1:-87306336 | None:intergenic |
| AGGGATGATTAAGAAGATTA+AGG | 0.275419 | 3.1:+87307120 | MS.gene014682:CDS |
| GCATTCTCAGCAAGGGTATA+TGG | 0.307049 | 3.1:-87307649 | None:intergenic |
| CTTGTGGAAGAGCTTTCTCT+TGG | 0.336541 | 3.1:+87307349 | MS.gene014682:CDS |
| TCACGGAGATCCACCATTTC+CGG | 0.339036 | 3.1:-87306860 | None:intergenic |
| AGCAGCGGAGTCTTGAGATT+TGG | 0.347607 | 3.1:-87306546 | None:intergenic |
| CTCTGTTCTATATCTGTCTT+AGG | 0.348731 | 3.1:-87307034 | None:intergenic |
| TGTCAAGGCAATTGGGTGCT+TGG | 0.354279 | 3.1:+87307560 | MS.gene014682:CDS |
| ATCGGTGTAGGATTCGGTTT+TGG | 0.362816 | 3.1:-87306318 | None:intergenic |
| TCTCACCGCCATGGCTGTTC+CGG | 0.362983 | 3.1:+87306703 | MS.gene014682:CDS |
| GATAGAGCTGTCAAGGCAAT+TGG | 0.370145 | 3.1:+87307552 | MS.gene014682:CDS |
| TTGTGGAAGAGCTTTCTCTT+GGG | 0.371995 | 3.1:+87307350 | MS.gene014682:CDS |
| ATGATGCTTTGTGTGTTGTT+AGG | 0.372583 | 3.1:+87307482 | MS.gene014682:CDS |
| TTTGTTATCGGTGTAGGATT+CGG | 0.375261 | 3.1:-87306324 | None:intergenic |
| CATACCTTTGGGGCCGAGAC+TGG | 0.392090 | 3.1:-87306411 | None:intergenic |
| GGAGGATCGGTGAGGGGCTG+CGG | 0.401126 | 3.1:-87306297 | None:intergenic |
| AATCTTAGCATTCTCCATTC+TGG | 0.406226 | 3.1:-87306984 | None:intergenic |
| GTCAAGGCAATTGGGTGCTT+GGG | 0.415529 | 3.1:+87307561 | MS.gene014682:CDS |
| CGATCCCGCTAGGCCGGAAA+TGG | 0.417675 | 3.1:+87306847 | MS.gene014682:CDS |
| AGAACTGAATCAACAGCAAT+AGG | 0.421556 | 3.1:-87306815 | None:intergenic |
| AGCTCAGTAACAATTGCAAT+CGG | 0.423035 | 3.1:-87307682 | None:intergenic |
| ATTAAGAAGATTAAGGCAAC+TGG | 0.425529 | 3.1:+87307127 | MS.gene014682:CDS |
| TTTGTGTGTTGTTAGGTGTT+TGG | 0.427682 | 3.1:+87307489 | MS.gene014682:CDS |
| AAATGCTCAATATTAGCAAT+AGG | 0.434996 | 3.1:-87307298 | None:intergenic |
| ATTTCTGGTATTAAGGATAT+GGG | 0.441434 | 3.1:+87307391 | MS.gene014682:CDS |
| TTTGCGTTTGTTATCGGTGT+AGG | 0.444094 | 3.1:-87306330 | None:intergenic |
| TAGCACTTCGTTGAATAGTA+AGG | 0.456781 | 3.1:+87306763 | MS.gene014682:CDS |
| TCACGATCAGTGAGTTCAAC+CGG | 0.461390 | 3.1:-87306722 | None:intergenic |
| AACGCCGTTCGCACCAGTCT+CGG | 0.462746 | 3.1:+87306398 | MS.gene014682:CDS |
| ACCACAACTGTGCTTGTTCG+TGG | 0.463002 | 3.1:+87307418 | MS.gene014682:CDS |
| TACTGAGCTTGTGAAGGGCT+TGG | 0.463815 | 3.1:+87306922 | MS.gene014682:CDS |
| GTGATTATTCTCAGATGGAT+AGG | 0.464278 | 3.1:+87307068 | MS.gene014682:CDS |
| CAAGACTCCGCTGCTGGTGA+TGG | 0.468281 | 3.1:+87306554 | MS.gene014682:CDS |
| GAATGTGGTGCAGCCATTGC+TGG | 0.481414 | 3.1:+87307783 | MS.gene014682:CDS |
| GAAGAGCTTTCTCTTGGGGA+TGG | 0.486289 | 3.1:+87307355 | MS.gene014682:CDS |
| TCCACCATTTCCGGCCTAGC+GGG | 0.488011 | 3.1:-87306851 | None:intergenic |
| GCAATTGGGTGCTTGGGCTA+AGG | 0.488468 | 3.1:+87307567 | MS.gene014682:CDS |
| AGGCAAACAATTAAGAGTCT+TGG | 0.489277 | 3.1:-87307278 | None:intergenic |
| TGTCTCCTCCTTCTCTCTCA+TGG | 0.491398 | 3.1:+87306620 | MS.gene014682:CDS |
| TGTGGAAGAGCTTTCTCTTG+GGG | 0.491536 | 3.1:+87307351 | MS.gene014682:CDS |
| TATACCCTTGCTGAGAATGC+AGG | 0.493053 | 3.1:+87307652 | MS.gene014682:CDS |
| CAGTCTCGGCCCCAAAGGTA+TGG | 0.493521 | 3.1:+87306412 | MS.gene014682:CDS |
| CTGAGGAATCGTCATGCTAA+AGG | 0.500255 | 3.1:+87307703 | MS.gene014682:CDS |
| AACGGCGTTAGCGACGGAAC+GGG | 0.500736 | 3.1:-87306384 | None:intergenic |
| TGTCATCGATCCCGCTAGGC+CGG | 0.501041 | 3.1:+87306841 | MS.gene014682:CDS |
| TCAACACTGGAATCAATGTC+AGG | 0.507995 | 3.1:+87307731 | MS.gene014682:CDS |
| AAATCTCAAGACTCCGCTGC+TGG | 0.512750 | 3.1:+87306548 | MS.gene014682:CDS |
| ATAGAGCTGTCAAGGCAATT+GGG | 0.513984 | 3.1:+87307553 | MS.gene014682:CDS |
| GATTGCAGGTGGTGGTGCTC+CGG | 0.514051 | 3.1:+87307528 | MS.gene014682:CDS |
| TGCCTTGACAGCTCTATCTC+CGG | 0.516484 | 3.1:-87307547 | None:intergenic |
| GTTGGTGATGATAACTTCGT+TGG | 0.525584 | 3.1:-87306456 | None:intergenic |
| GGAACGGGCGGCGATGATGT+TGG | 0.529719 | 3.1:-87306369 | None:intergenic |
| TCCCGCTAGGCCGGAAATGG+TGG | 0.531201 | 3.1:+87306850 | MS.gene014682:CDS |
| AAGAGCTTTCTCTTGGGGAT+GGG | 0.531234 | 3.1:+87307356 | MS.gene014682:CDS |
| AACTTGCATCTTGTTGAGGA+TGG | 0.540091 | 3.1:-87306489 | None:intergenic |
| GGTTAGTGATTATTCTCAGA+TGG | 0.543811 | 3.1:+87307063 | MS.gene014682:CDS |
| ACATTTCTCGAGAAGTGCTC+CGG | 0.552049 | 3.1:-87306600 | None:intergenic |
| CGGCGATGATGTTGGATTGA+CGG | 0.559941 | 3.1:-87306361 | None:intergenic |
| GATGATAACTTCGTTGGAAG+AGG | 0.560445 | 3.1:-87306450 | None:intergenic |
| CTCCGGAGATAGAGCTGTCA+AGG | 0.563162 | 3.1:+87307545 | MS.gene014682:CDS |
| GAACGGCGTTAGCGACGGAA+CGG | 0.564350 | 3.1:-87306385 | None:intergenic |
| GGGGCCGAGACTGGTGCGAA+CGG | 0.565754 | 3.1:-87306402 | None:intergenic |
| AGTGAATCAGAGATAACAGT+AGG | 0.569565 | 3.1:-87306650 | None:intergenic |
| AAGGTTAGTCATGCTGCTGG+TGG | 0.570337 | 3.1:+87306956 | MS.gene014682:CDS |
| GGCGATGACAACAACGGTGG+TGG | 0.571260 | 3.1:-87306579 | None:intergenic |
| CGCACCAGTCTCGGCCCCAA+AGG | 0.572245 | 3.1:+87306407 | MS.gene014682:CDS |
| CCTCACACACTCTGTTGCCA+AGG | 0.573445 | 3.1:-87307824 | None:intergenic |
| TGGAACAACTTCAAGTGCCT+CGG | 0.574575 | 3.1:-87307629 | None:intergenic |
| GCTCAGTAACAATTGCAATC+GGG | 0.575791 | 3.1:-87307681 | None:intergenic |
| TCTCTGTCATCGATCCCGCT+AGG | 0.576821 | 3.1:+87306837 | MS.gene014682:CDS |
| ACCACCGTTGTTGTCATCGC+CGG | 0.577312 | 3.1:+87306581 | MS.gene014682:CDS |
| GAAGAACTTGCATCTTGTTG+AGG | 0.580248 | 3.1:-87306493 | None:intergenic |
| GGCGTTAGCGACGGAACGGG+CGG | 0.589560 | 3.1:-87306381 | None:intergenic |
| GTTGGGTTATGCTGATCTTG+TGG | 0.590393 | 3.1:+87307333 | MS.gene014682:CDS |
| GGTGGTTCCATCACCAGCAG+CGG | 0.591723 | 3.1:-87306561 | None:intergenic |
| GAATACCATGAGAGAGAAGG+AGG | 0.591885 | 3.1:-87306625 | None:intergenic |
| GCACTTGTGCTAACCAGCAA+TGG | 0.592202 | 3.1:-87307796 | None:intergenic |
| TCAAACCTGCATTCTCAGCA+AGG | 0.593910 | 3.1:-87307657 | None:intergenic |
| GAGTTCAACCGGAACAGCCA+TGG | 0.594130 | 3.1:-87306711 | None:intergenic |
| CTGTATTCGTGCATTTGCCG+AGG | 0.594695 | 3.1:+87307612 | MS.gene014682:CDS |
| GGTGCGAACGGCGTTAGCGA+CGG | 0.594895 | 3.1:-87306390 | None:intergenic |
| TGATGATACTGAGCTTGTGA+AGG | 0.595971 | 3.1:+87306916 | MS.gene014682:CDS |
| TTAGCATTCTCCATTCTGGT+AGG | 0.596904 | 3.1:-87306980 | None:intergenic |
| ACACTCTGTTGCCAAGGTGA+TGG | 0.598855 | 3.1:-87307818 | None:intergenic |
| CGAAATTTGAAACTGAATCA+CGG | 0.599026 | 3.1:-87307008 | None:intergenic |
| TGCTGGTGGACCTACCAGAA+TGG | 0.600235 | 3.1:+87306970 | MS.gene014682:CDS |
| GCTAAAGGTGAGATCAACAC+TGG | 0.604820 | 3.1:+87307718 | MS.gene014682:CDS |
| TGTTCTATATCTGTCTTAGG+AGG | 0.605667 | 3.1:-87307031 | None:intergenic |
| GGTGAATACCATGAGAGAGA+AGG | 0.606764 | 3.1:-87306628 | None:intergenic |
| GAGGATGGTAGCGCCGTCGT+TGG | 0.607730 | 3.1:-87306474 | None:intergenic |
| GATGATACTGAGCTTGTGAA+GGG | 0.610892 | 3.1:+87306917 | MS.gene014682:CDS |
| TTGCAATTGTTACTGAGCTG+AGG | 0.612866 | 3.1:+87307686 | MS.gene014682:CDS |
| TCCACGAACAAGCACAGTTG+TGG | 0.612984 | 3.1:-87307419 | None:intergenic |
| GCTGCACCACATTCTCCTCA+AGG | 0.613760 | 3.1:-87307774 | None:intergenic |
| TAGCACAAGTGCCATCACCT+TGG | 0.618089 | 3.1:+87307807 | MS.gene014682:CDS |
| TCAAATTACAAACATCCTTG+AGG | 0.621720 | 3.1:+87307759 | MS.gene014682:CDS |
| AAGAAGGTTAGTCATGCTGC+TGG | 0.624743 | 3.1:+87306953 | MS.gene014682:CDS |
| ACTGGAATCAATGTCAGGAA+AGG | 0.625427 | 3.1:+87307736 | MS.gene014682:CDS |
| AAACATCCTTGAGGAGAATG+TGG | 0.628033 | 3.1:+87307768 | MS.gene014682:CDS |
| TCTTAACAATCTTCACATCA+CGG | 0.628490 | 3.1:-87306877 | None:intergenic |
| TGTTGATGTTCTCACCGCCA+TGG | 0.628840 | 3.1:+87306694 | MS.gene014682:CDS |
| AACATCAACAGCTTTAACAG+AGG | 0.629483 | 3.1:-87306681 | None:intergenic |
| GTGAAGATTGTTAAGAAGCT+CGG | 0.630785 | 3.1:+87306884 | MS.gene014682:CDS |
| TTAGGTGTTTGGTTGCCAAG+AGG | 0.631658 | 3.1:+87307500 | MS.gene014682:CDS |
| ATCCACCATTTCCGGCCTAG+CGG | 0.644279 | 3.1:-87306852 | None:intergenic |
| GTGAATCAGAGATAACAGTA+GGG | 0.649997 | 3.1:-87306649 | None:intergenic |
| CCTTGGCAACAGAGTGTGTG+AGG | 0.652881 | 3.1:+87307824 | MS.gene014682:CDS |
| CAAACCTGCATTCTCAGCAA+GGG | 0.653006 | 3.1:-87307656 | None:intergenic |
| AGATATAGAACAGAGTATTG+TGG | 0.666081 | 3.1:+87307042 | MS.gene014682:CDS |
| GAAGTTATCATCACCAACGA+CGG | 0.680075 | 3.1:+87306461 | MS.gene014682:CDS |
| TTCAACCGGAACAGCCATGG+CGG | 0.690129 | 3.1:-87306708 | None:intergenic |
| AAGATTGTTAAGAAGCTCGG+TGG | 0.695277 | 3.1:+87306887 | MS.gene014682:CDS |
| TGCTCCGGCGATGACAACAA+CGG | 0.714797 | 3.1:-87306585 | None:intergenic |
| TCCGGCGATGACAACAACGG+TGG | 0.732056 | 3.1:-87306582 | None:intergenic |
| TTGATGATATTGTAACTGTG+AGG | 0.759737 | 3.1:+87307860 | MS.gene014682:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATGCTCAATATTAGCAAT+AGG | - | chr3.1:87307301-87307320 | None:intergenic | 25.0% |
| !!! | ATTTCTGGTATTAAGGATAT+GGG | + | chr3.1:87307391-87307410 | MS.gene014682:CDS | 25.0% |
| AGGGATGATTAAGAAGATTA+AGG | + | chr3.1:87307120-87307139 | MS.gene014682:CDS | 30.0% | |
| ATTAAGAAGATTAAGGCAAC+TGG | + | chr3.1:87307127-87307146 | MS.gene014682:CDS | 30.0% | |
| TCAAATTACAAACATCCTTG+AGG | + | chr3.1:87307759-87307778 | MS.gene014682:CDS | 30.0% | |
| TCTTAACAATCTTCACATCA+CGG | - | chr3.1:87306880-87306899 | None:intergenic | 30.0% | |
| ! | AAGAGAGGAGTTACATTTTA+GGG | + | chr3.1:87307101-87307120 | MS.gene014682:CDS | 30.0% |
| ! | ATCATTTTGTCCATACCTTT+GGG | - | chr3.1:87306425-87306444 | None:intergenic | 30.0% |
| ! | CGAAATTTGAAACTGAATCA+CGG | - | chr3.1:87307011-87307030 | None:intergenic | 30.0% |
| ! | TCTTGCTAAAGCTAAGATTT+TGG | + | chr3.1:87307216-87307235 | MS.gene014682:CDS | 30.0% |
| ! | TTGATGATATTGTAACTGTG+AGG | + | chr3.1:87307860-87307879 | MS.gene014682:CDS | 30.0% |
| !! | AGATATAGAACAGAGTATTG+TGG | + | chr3.1:87307042-87307061 | MS.gene014682:CDS | 30.0% |
| !! | GATTTCTGGTATTAAGGATA+TGG | + | chr3.1:87307390-87307409 | MS.gene014682:CDS | 30.0% |
| !! | TGTGAAGATTTCTGGTATTA+AGG | + | chr3.1:87307384-87307403 | MS.gene014682:CDS | 30.0% |
| AATCTTAGCATTCTCCATTC+TGG | - | chr3.1:87306987-87307006 | None:intergenic | 35.0% | |
| AGAACTGAATCAACAGCAAT+AGG | - | chr3.1:87306818-87306837 | None:intergenic | 35.0% | |
| AGCTCAGTAACAATTGCAAT+CGG | - | chr3.1:87307685-87307704 | None:intergenic | 35.0% | |
| AGGCAAACAATTAAGAGTCT+TGG | - | chr3.1:87307281-87307300 | None:intergenic | 35.0% | |
| AGTGAATCAGAGATAACAGT+AGG | - | chr3.1:87306653-87306672 | None:intergenic | 35.0% | |
| CTCTGTTCTATATCTGTCTT+AGG | - | chr3.1:87307037-87307056 | None:intergenic | 35.0% | |
| GGTTAGTGATTATTCTCAGA+TGG | + | chr3.1:87307063-87307082 | MS.gene014682:CDS | 35.0% | |
| GTGAAGATTGTTAAGAAGCT+CGG | + | chr3.1:87306884-87306903 | MS.gene014682:CDS | 35.0% | |
| GTGAATCAGAGATAACAGTA+GGG | - | chr3.1:87306652-87306671 | None:intergenic | 35.0% | |
| GTGATTATTCTCAGATGGAT+AGG | + | chr3.1:87307068-87307087 | MS.gene014682:CDS | 35.0% | |
| TAGCACTTCGTTGAATAGTA+AGG | + | chr3.1:87306763-87306782 | MS.gene014682:CDS | 35.0% | |
| TGTTCTATATCTGTCTTAGG+AGG | - | chr3.1:87307034-87307053 | None:intergenic | 35.0% | |
| ! | AACATCAACAGCTTTAACAG+AGG | - | chr3.1:87306684-87306703 | None:intergenic | 35.0% |
| ! | ATGATGCTTTGTGTGTTGTT+AGG | + | chr3.1:87307482-87307501 | MS.gene014682:CDS | 35.0% |
| ! | GAAGAGAGGAGTTACATTTT+AGG | + | chr3.1:87307100-87307119 | MS.gene014682:CDS | 35.0% |
| ! | GATCATTTTGTCCATACCTT+TGG | - | chr3.1:87306426-87306445 | None:intergenic | 35.0% |
| ! | TCAGATGGATAGGATTTTGA+AGG | + | chr3.1:87307078-87307097 | MS.gene014682:CDS | 35.0% |
| ! | TCATTTTGTCCATACCTTTG+GGG | - | chr3.1:87306424-87306443 | None:intergenic | 35.0% |
| ! | TTTGTGTGTTGTTAGGTGTT+TGG | + | chr3.1:87307489-87307508 | MS.gene014682:CDS | 35.0% |
| ! | TTTGTTATCGGTGTAGGATT+CGG | - | chr3.1:87306327-87306346 | None:intergenic | 35.0% |
| !! | ATAGGATTTTGAAGGAAGAG+AGG | + | chr3.1:87307086-87307105 | MS.gene014682:CDS | 35.0% |
| !! | ATCGTCTTTGCGTTTGTTAT+CGG | - | chr3.1:87306339-87306358 | None:intergenic | 35.0% |
| AAACATCCTTGAGGAGAATG+TGG | + | chr3.1:87307768-87307787 | MS.gene014682:CDS | 40.0% | |
| AACTTGCATCTTGTTGAGGA+TGG | - | chr3.1:87306492-87306511 | None:intergenic | 40.0% | |
| AAGATTGTTAAGAAGCTCGG+TGG | + | chr3.1:87306887-87306906 | MS.gene014682:CDS | 40.0% | |
| ACCTGCAATCAAAAACCTCT+TGG | - | chr3.1:87307518-87307537 | None:intergenic | 40.0% | |
| ACTGGAATCAATGTCAGGAA+AGG | + | chr3.1:87307736-87307755 | MS.gene014682:CDS | 40.0% | |
| ATAGAGCTGTCAAGGCAATT+GGG | + | chr3.1:87307553-87307572 | MS.gene014682:CDS | 40.0% | |
| GAAGAACTTGCATCTTGTTG+AGG | - | chr3.1:87306496-87306515 | None:intergenic | 40.0% | |
| GAAGTTATCATCACCAACGA+CGG | + | chr3.1:87306461-87306480 | MS.gene014682:CDS | 40.0% | |
| GATGATAACTTCGTTGGAAG+AGG | - | chr3.1:87306453-87306472 | None:intergenic | 40.0% | |
| GATGATACTGAGCTTGTGAA+GGG | + | chr3.1:87306917-87306936 | MS.gene014682:CDS | 40.0% | |
| GCTCAGTAACAATTGCAATC+GGG | - | chr3.1:87307684-87307703 | None:intergenic | 40.0% | |
| GGGAAGATTGTGAAGATTTC+TGG | + | chr3.1:87307376-87307395 | MS.gene014682:CDS | 40.0% | |
| TCAACACTGGAATCAATGTC+AGG | + | chr3.1:87307731-87307750 | MS.gene014682:CDS | 40.0% | |
| TGATGATACTGAGCTTGTGA+AGG | + | chr3.1:87306916-87306935 | MS.gene014682:CDS | 40.0% | |
| TTAGCATTCTCCATTCTGGT+AGG | - | chr3.1:87306983-87307002 | None:intergenic | 40.0% | |
| TTGCAATTGTTACTGAGCTG+AGG | + | chr3.1:87307686-87307705 | MS.gene014682:CDS | 40.0% | |
| TTGTGGAAGAGCTTTCTCTT+GGG | + | chr3.1:87307350-87307369 | MS.gene014682:CDS | 40.0% | |
| ! | CATTTTCGTGCTGAGAAGTT+GGG | + | chr3.1:87307316-87307335 | MS.gene014682:CDS | 40.0% |
| ! | GAGTTCAACGAGCATTTTAG+CGG | - | chr3.1:87306525-87306544 | None:intergenic | 40.0% |
| !! | AAGAGGTTTTTGATTGCAGG+TGG | + | chr3.1:87307517-87307536 | MS.gene014682:CDS | 40.0% |
| !! | GGGCTTGGTTTTTGATAAGA+AGG | + | chr3.1:87306937-87306956 | MS.gene014682:CDS | 40.0% |
| !! | GTTGGTGATGATAACTTCGT+TGG | - | chr3.1:87306459-87306478 | None:intergenic | 40.0% |
| !! | TTTGCGTTTGTTATCGGTGT+AGG | - | chr3.1:87306333-87306352 | None:intergenic | 40.0% |
| AAGAGCTTTCTCTTGGGGAT+GGG | + | chr3.1:87307356-87307375 | MS.gene014682:CDS | 45.0% | |
| CAAACCTGCATTCTCAGCAA+GGG | - | chr3.1:87307659-87307678 | None:intergenic | 45.0% | |
| CTGAGGAATCGTCATGCTAA+AGG | + | chr3.1:87307703-87307722 | MS.gene014682:CDS | 45.0% | |
| CTTGTGGAAGAGCTTTCTCT+TGG | + | chr3.1:87307349-87307368 | MS.gene014682:CDS | 45.0% | |
| GAATACCATGAGAGAGAAGG+AGG | - | chr3.1:87306628-87306647 | None:intergenic | 45.0% | |
| GATAGAGCTGTCAAGGCAAT+TGG | + | chr3.1:87307552-87307571 | MS.gene014682:CDS | 45.0% | |
| GCTAAAGGTGAGATCAACAC+TGG | + | chr3.1:87307718-87307737 | MS.gene014682:CDS | 45.0% | |
| GGTGAATACCATGAGAGAGA+AGG | - | chr3.1:87306631-87306650 | None:intergenic | 45.0% | |
| GTTGGGTTATGCTGATCTTG+TGG | + | chr3.1:87307333-87307352 | MS.gene014682:CDS | 45.0% | |
| TATACCCTTGCTGAGAATGC+AGG | + | chr3.1:87307652-87307671 | MS.gene014682:CDS | 45.0% | |
| TCAAACCTGCATTCTCAGCA+AGG | - | chr3.1:87307660-87307679 | None:intergenic | 45.0% | |
| TCACGATCAGTGAGTTCAAC+CGG | - | chr3.1:87306725-87306744 | None:intergenic | 45.0% | |
| TGGAACAACTTCAAGTGCCT+CGG | - | chr3.1:87307632-87307651 | None:intergenic | 45.0% | |
| TGTGGAAGAGCTTTCTCTTG+GGG | + | chr3.1:87307351-87307370 | MS.gene014682:CDS | 45.0% | |
| TTAGGTGTTTGGTTGCCAAG+AGG | + | chr3.1:87307500-87307519 | MS.gene014682:CDS | 45.0% | |
| ! | AAGAAGGTTAGTCATGCTGC+TGG | + | chr3.1:87306953-87306972 | MS.gene014682:CDS | 45.0% |
| ! | AAGGTTTTGCATGGGATGGA+GGG | + | chr3.1:87307586-87307605 | MS.gene014682:CDS | 45.0% |
| ! | CTTGGGCTAAGGTTTTGCAT+GGG | + | chr3.1:87307578-87307597 | MS.gene014682:CDS | 45.0% |
| ! | GCATTCTCAGCAAGGGTATA+TGG | - | chr3.1:87307652-87307671 | None:intergenic | 45.0% |
| ! | GCATTTTCGTGCTGAGAAGT+TGG | + | chr3.1:87307315-87307334 | MS.gene014682:CDS | 45.0% |
| ! | TAAGGTTTTGCATGGGATGG+AGG | + | chr3.1:87307585-87307604 | MS.gene014682:CDS | 45.0% |
| !! | ACATTTCTCGAGAAGTGCTC+CGG | - | chr3.1:87306603-87306622 | None:intergenic | 45.0% |
| !! | AGGTTTTTGATTGCAGGTGG+TGG | + | chr3.1:87307520-87307539 | MS.gene014682:CDS | 45.0% |
| !! | ATCGGTGTAGGATTCGGTTT+TGG | - | chr3.1:87306321-87306340 | None:intergenic | 45.0% |
| !! | GCCAAGAGGTTTTTGATTGC+AGG | + | chr3.1:87307514-87307533 | MS.gene014682:CDS | 45.0% |
| !! | TTCAACGAGCATTTTAGCGG+CGG | - | chr3.1:87306522-87306541 | None:intergenic | 45.0% |
| !!! | AGGATTCGGTTTTGGAGGAT+CGG | - | chr3.1:87306313-87306332 | None:intergenic | 45.0% |
| AAATCTCAAGACTCCGCTGC+TGG | + | chr3.1:87306548-87306567 | MS.gene014682:CDS | 50.0% | |
| ACACTCTGTTGCCAAGGTGA+TGG | - | chr3.1:87307821-87307840 | None:intergenic | 50.0% | |
| ACCACAACTGTGCTTGTTCG+TGG | + | chr3.1:87307418-87307437 | MS.gene014682:CDS | 50.0% | |
| AGCAGCGGAGTCTTGAGATT+TGG | - | chr3.1:87306549-87306568 | None:intergenic | 50.0% | |
| CGGCGATGATGTTGGATTGA+CGG | - | chr3.1:87306364-87306383 | None:intergenic | 50.0% | |
| CTGTATTCGTGCATTTGCCG+AGG | + | chr3.1:87307612-87307631 | MS.gene014682:CDS | 50.0% | |
| GAAGAGCTTTCTCTTGGGGA+TGG | + | chr3.1:87307355-87307374 | MS.gene014682:CDS | 50.0% | |
| GCACTTGTGCTAACCAGCAA+TGG | - | chr3.1:87307799-87307818 | None:intergenic | 50.0% | |
| GTCAAGGCAATTGGGTGCTT+GGG | + | chr3.1:87307561-87307580 | MS.gene014682:CDS | 50.0% | |
| TACTGAGCTTGTGAAGGGCT+TGG | + | chr3.1:87306922-87306941 | MS.gene014682:CDS | 50.0% | |
| TAGCACAAGTGCCATCACCT+TGG | + | chr3.1:87307807-87307826 | MS.gene014682:CDS | 50.0% | |
| TCACGGAGATCCACCATTTC+CGG | - | chr3.1:87306863-87306882 | None:intergenic | 50.0% | |
| TCCACGAACAAGCACAGTTG+TGG | - | chr3.1:87307422-87307441 | None:intergenic | 50.0% | |
| TGCCTTGACAGCTCTATCTC+CGG | - | chr3.1:87307550-87307569 | None:intergenic | 50.0% | |
| TGTCAAGGCAATTGGGTGCT+TGG | + | chr3.1:87307560-87307579 | MS.gene014682:CDS | 50.0% | |
| TGTCTCCTCCTTCTCTCTCA+TGG | + | chr3.1:87306620-87306639 | MS.gene014682:CDS | 50.0% | |
| TGTTGATGTTCTCACCGCCA+TGG | + | chr3.1:87306694-87306713 | MS.gene014682:CDS | 50.0% | |
| ! | AAGGTTAGTCATGCTGCTGG+TGG | + | chr3.1:87306956-87306975 | MS.gene014682:CDS | 50.0% |
| ! | GCTTGGGCTAAGGTTTTGCA+TGG | + | chr3.1:87307577-87307596 | MS.gene014682:CDS | 50.0% |
| ! | GGCTAAGGTTTTGCATGGGA+TGG | + | chr3.1:87307582-87307601 | MS.gene014682:CDS | 50.0% |
| !! | GGTGTAGGATTCGGTTTTGG+AGG | - | chr3.1:87306318-87306337 | None:intergenic | 50.0% |
| !! | TCAACGAGCATTTTAGCGGC+GGG | - | chr3.1:87306521-87306540 | None:intergenic | 50.0% |
| ACCACCGTTGTTGTCATCGC+CGG | + | chr3.1:87306581-87306600 | MS.gene014682:CDS | 55.0% | |
| ATCCACCATTTCCGGCCTAG+CGG | - | chr3.1:87306855-87306874 | None:intergenic | 55.0% | |
| CCTCACACACTCTGTTGCCA+AGG | - | chr3.1:87307827-87307846 | None:intergenic | 55.0% | |
| CCTTGGCAACAGAGTGTGTG+AGG | + | chr3.1:87307824-87307843 | MS.gene014682:CDS | 55.0% | |
| CTCCGGAGATAGAGCTGTCA+AGG | + | chr3.1:87307545-87307564 | MS.gene014682:CDS | 55.0% | |
| GAATGTGGTGCAGCCATTGC+TGG | + | chr3.1:87307783-87307802 | MS.gene014682:CDS | 55.0% | |
| GAGTTCAACCGGAACAGCCA+TGG | - | chr3.1:87306714-87306733 | None:intergenic | 55.0% | |
| GCAATTGGGTGCTTGGGCTA+AGG | + | chr3.1:87307567-87307586 | MS.gene014682:CDS | 55.0% | |
| GCTGCACCACATTCTCCTCA+AGG | - | chr3.1:87307777-87307796 | None:intergenic | 55.0% | |
| TCTCTGTCATCGATCCCGCT+AGG | + | chr3.1:87306837-87306856 | MS.gene014682:CDS | 55.0% | |
| TGCTCCGGCGATGACAACAA+CGG | - | chr3.1:87306588-87306607 | None:intergenic | 55.0% | |
| TTCAACCGGAACAGCCATGG+CGG | - | chr3.1:87306711-87306730 | None:intergenic | 55.0% | |
| ! | TGCTGGTGGACCTACCAGAA+TGG | + | chr3.1:87306970-87306989 | MS.gene014682:CDS | 55.0% |
| !!! | CGGTTTTGGAGGATCGGTGA+GGG | - | chr3.1:87306307-87306326 | None:intergenic | 55.0% |
| !!! | GGTTTTGGAGGATCGGTGAG+GGG | - | chr3.1:87306306-87306325 | None:intergenic | 55.0% |
| !!! | TCGGTTTTGGAGGATCGGTG+AGG | - | chr3.1:87306308-87306327 | None:intergenic | 55.0% |
| AACGCCGTTCGCACCAGTCT+CGG | + | chr3.1:87306398-87306417 | MS.gene014682:CDS | 60.0% | |
| AACGGCGTTAGCGACGGAAC+GGG | - | chr3.1:87306387-87306406 | None:intergenic | 60.0% | |
| CAAGACTCCGCTGCTGGTGA+TGG | + | chr3.1:87306554-87306573 | MS.gene014682:CDS | 60.0% | |
| CAGTCTCGGCCCCAAAGGTA+TGG | + | chr3.1:87306412-87306431 | MS.gene014682:CDS | 60.0% | |
| GAACGGCGTTAGCGACGGAA+CGG | - | chr3.1:87306388-87306407 | None:intergenic | 60.0% | |
| GGCGATGACAACAACGGTGG+TGG | - | chr3.1:87306582-87306601 | None:intergenic | 60.0% | |
| GGTGGTTCCATCACCAGCAG+CGG | - | chr3.1:87306564-87306583 | None:intergenic | 60.0% | |
| TCCACCATTTCCGGCCTAGC+GGG | - | chr3.1:87306854-87306873 | None:intergenic | 60.0% | |
| TCCGGCGATGACAACAACGG+TGG | - | chr3.1:87306585-87306604 | None:intergenic | 60.0% | |
| TCTCACCGCCATGGCTGTTC+CGG | + | chr3.1:87306703-87306722 | MS.gene014682:CDS | 60.0% | |
| TGTCATCGATCCCGCTAGGC+CGG | + | chr3.1:87306841-87306860 | MS.gene014682:CDS | 60.0% | |
| ! | GATTGCAGGTGGTGGTGCTC+CGG | + | chr3.1:87307528-87307547 | MS.gene014682:CDS | 60.0% |
| !! | CATACCTTTGGGGCCGAGAC+TGG | - | chr3.1:87306414-87306433 | None:intergenic | 60.0% |
| CGATCCCGCTAGGCCGGAAA+TGG | + | chr3.1:87306847-87306866 | MS.gene014682:CDS | 65.0% | |
| GGAACGGGCGGCGATGATGT+TGG | - | chr3.1:87306372-87306391 | None:intergenic | 65.0% | |
| GGTGCGAACGGCGTTAGCGA+CGG | - | chr3.1:87306393-87306412 | None:intergenic | 65.0% | |
| TCCCGCTAGGCCGGAAATGG+TGG | + | chr3.1:87306850-87306869 | MS.gene014682:CDS | 65.0% | |
| ! | GAGGATGGTAGCGCCGTCGT+TGG | - | chr3.1:87306477-87306496 | None:intergenic | 65.0% |
| CGCACCAGTCTCGGCCCCAA+AGG | + | chr3.1:87306407-87306426 | MS.gene014682:CDS | 70.0% | |
| GGAGGATCGGTGAGGGGCTG+CGG | - | chr3.1:87306300-87306319 | None:intergenic | 70.0% | |
| GGCGTTAGCGACGGAACGGG+CGG | - | chr3.1:87306384-87306403 | None:intergenic | 70.0% | |
| GGGGCCGAGACTGGTGCGAA+CGG | - | chr3.1:87306405-87306424 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 87306287 | 87307885 | 87306287 | ID=MS.gene014682 |
| chr3.1 | mRNA | 87306287 | 87307885 | 87306287 | ID=MS.gene014682.t1;Parent=MS.gene014682 |
| chr3.1 | exon | 87306287 | 87307885 | 87306287 | ID=MS.gene014682.t1.exon1;Parent=MS.gene014682.t1 |
| chr3.1 | CDS | 87306287 | 87307885 | 87306287 | ID=cds.MS.gene014682.t1;Parent=MS.gene014682.t1 |
| Gene Sequence |
| Protein sequence |
