AlfalfaGEDB | MS.gene066566

M. sativa cultivar XinJiangDaYe / MS.gene066566

KEGG: K09494
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005829 GO:0005832 GO:0006457 GO:0008144 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0051082 GO:0097159 GO:0097367 GO:0101031 GO:0110165 GO:1901265 GO:1901363
PFAM: PF00118.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066566.t1	XP_003626285.1	99.8	500	1	0	1	500	28	527	1.50E-274	954.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066566.t1	Q940P8	88.8	500	56	0	1	500	28	527	3.7e-250	865.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066566.t1	G7KYN5	99.8	500	1	0	1	500	28	527	1.1e-274	954.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049207	MS.gene066566	0.803854	2.86E-49	-1.69E-46
MS.gene049255	MS.gene066566	0.841908	3.57E-58	-1.69E-46
MS.gene049341	MS.gene066566	0.809847	1.55E-50	-1.69E-46
MS.gene049411	MS.gene066566	0.800945	1.14E-48	-1.69E-46
MS.gene049824	MS.gene066566	0.85097	1.20E-60	-1.69E-46
MS.gene050689	MS.gene066566	0.855324	6.81E-62	-1.69E-46
MS.gene050838	MS.gene066566	0.808044	3.76E-50	-1.69E-46
MS.gene050877	MS.gene066566	0.9482	1.51E-106	-1.69E-46
MS.gene050945	MS.gene066566	0.830077	3.60E-55	-1.69E-46
MS.gene051234	MS.gene066566	0.849049	4.15E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene005792	MS.gene066566	PPI
MS.gene009372	MS.gene066566	PPI
MS.gene016615	MS.gene066566	PPI
MS.gene026610	MS.gene066566	PPI
MS.gene028300	MS.gene066566	PPI
MS.gene035805	MS.gene066566	PPI
MS.gene042598	MS.gene066566	PPI
MS.gene056221	MS.gene066566	PPI
MS.gene066104	MS.gene066566	PPI
MS.gene066566	MS.gene97876	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066566.t1	MTR_7g113470	99.800	500	1	0	1	500	28	527	0.0	1005
MS.gene066566.t1	MTR_7g067470	98.400	500	8	0	1	500	28	527	0.0	993
MS.gene066566.t1	MTR_5g087560	37.097	496	301	6	2	489	34	526	3.72e-99	310
MS.gene066566.t1	MTR_8g088270	35.742	512	298	9	2	489	30	534	2.61e-89	283
MS.gene066566.t1	MTR_3g109925	35.259	502	306	7	2	490	35	530	3.07e-84	270
MS.gene066566.t1	MTR_3g086330	34.406	497	314	7	2	490	39	531	8.46e-84	269
MS.gene066566.t1	MTR_3g109925	32.323	495	273	7	2	490	35	473	1.74e-67	224
MS.gene066566.t1	MTR_7g406870	30.159	504	330	8	2	489	28	525	6.86e-62	211
MS.gene066566.t1	MTR_2g013540	30.616	503	327	12	2	490	30	524	2.67e-61	210
MS.gene066566.t1	MTR_6g032870	28.715	498	342	8	3	493	33	524	7.59e-52	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066566.t1	AT5G20890	88.800	500	56	0	1	500	28	527	0.0	889
MS.gene066566.t1	AT3G11830	37.097	496	301	6	2	489	34	526	2.09e-95	300
MS.gene066566.t1	AT3G20050	35.938	512	297	9	2	489	30	534	6.61e-95	298
MS.gene066566.t1	AT3G11830	36.895	496	300	7	2	489	34	524	3.52e-93	294
MS.gene066566.t1	AT3G18190	35.857	502	303	8	2	490	39	534	8.22e-89	282
MS.gene066566.t1	AT1G24510	33.797	503	309	9	2	490	39	531	1.14e-81	263
MS.gene066566.t1	AT1G24510	32.632	475	298	8	30	490	12	478	1.07e-71	236
MS.gene066566.t1	AT1G24510	31.965	463	293	8	42	490	1	455	3.82e-66	221
MS.gene066566.t1	AT3G02530	30.512	508	323	11	2	489	28	525	2.62e-62	213
MS.gene066566.t1	AT5G16070	31.214	519	320	15	2	497	28	532	8.94e-62	211

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Find 109 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGCAATTATAGTCAT+GGG	0.572960	7.4:+3318252	None:intergenic
AAAGTTCAAGATGATGAAGT+TGG	0.486158	7.4:-3318354	MS.gene066566:CDS
AACAGACTCAGGGTTGTCAA+AGG	0.580150	7.4:+3316363	None:intergenic
AACCAAGTCAGCAATAGCCA+TGG	0.632695	7.4:+3318524	None:intergenic
AACCCTGAGTCTGTTAAGCT+TGG	0.475389	7.4:-3316355	MS.gene066566:CDS
AACTACCTCTGTTGTTGTAT+TGG	0.419643	7.4:-3318325	MS.gene066566:CDS
AAGACTACCTTAGGCCCAAA+GGG	0.550690	7.4:-3318501	MS.gene066566:CDS
AATGACAGCAGGGTGTTGCT+TGG	0.551264	7.4:-3315248	MS.gene066566:CDS
AATTGCAGGTTTCCGAATGG+CGG	0.618540	7.4:-3318241	MS.gene066566:CDS
ACAACCATTGCTGATAATGC+TGG	0.517593	7.4:-3315110	MS.gene066566:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATAGAAGACATTGGG+AGG	+	chr7.4:3316958-3316977	None:intergenic	30.0%
AAACCTGCAATTATAGTCAT+GGG	+	chr7.4:3314585-3314604	None:intergenic	30.0%
AAAGTTCAAGATGATGAAGT+TGG	-	chr7.4:3314480-3314499	MS.gene066566:intron	30.0%
AAATGGAACTCTGTATTAGT+AGG	+	chr7.4:3314974-3314993	None:intergenic	30.0%
AATACAAAATCCCTCTCATT+AGG	+	chr7.4:3316897-3316916	None:intergenic	30.0%
AATGGAACTCTGTATTAGTA+GGG	+	chr7.4:3314973-3314992	None:intergenic	30.0%
ACTGACTGAAGCATAATAAA+TGG	+	chr7.4:3317379-3317398	None:intergenic	30.0%
AGATGCTGTAATGAGATTAA+AGG	-	chr7.4:3314934-3314953	MS.gene066566:intron	30.0%
AGGATTGGAAAGAAATTGAA+AGG	+	chr7.4:3315442-3315461	None:intergenic	30.0%
ATACAAAATCCCTCTCATTA+GGG	+	chr7.4:3316896-3316915	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	3314312	3318544	3314312	ID=MS.gene066566
chr7.4	mRNA	3314312	3318544	3314312	ID=MS.gene066566.t1;Parent=MS.gene066566
chr7.4	exon	3318184	3318544	3318184	ID=MS.gene066566.t1.exon1;Parent=MS.gene066566.t1
chr7.4	CDS	3318184	3318544	3318184	ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4	exon	3317901	3318016	3317901	ID=MS.gene066566.t1.exon2;Parent=MS.gene066566.t1
chr7.4	CDS	3317901	3318016	3317901	ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4	exon	3316971	3317047	3316971	ID=MS.gene066566.t1.exon3;Parent=MS.gene066566.t1
chr7.4	CDS	3316971	3317047	3316971	ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4	exon	3316250	3316735	3316250	ID=MS.gene066566.t1.exon4;Parent=MS.gene066566.t1
chr7.4	CDS	3316250	3316735	3316250	ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4	exon	3315022	3315337	3315022	ID=MS.gene066566.t1.exon5;Parent=MS.gene066566.t1
chr7.4	CDS	3315022	3315337	3315022	ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4	exon	3314312	3314458	3314312	ID=MS.gene066566.t1.exon6;Parent=MS.gene066566.t1
chr7.4	CDS	3314312	3314458	3314312	ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1

Gene Sequence

>MS.gene066566

ATGGCTATTGCTGACTTGGTTAAGACTACCTTAGGCCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGCCGTGAAGTTACTGTCACTAATGACGGTGCTACAATCTTGAAGTCCCTTCACATTGATAACCCAGCTGCTAAAGTCCTCGTCGACATTTCTAAAGTTCAAGATGATGAAGTTGGCGATGGAACTACCTCTGTTGTTGTATTGGCTGGCGAACTTTTAAGGGAAGCAGAAAAGCTCGTTGCAGCTAAAATTCATCCCATGACTATAATTGCAGGTTTCCGAATGGCGGCTGAGTGTGCTCGTAGTGCTTTGGTAGAGAAGGTTGTGGACAACAAAGGAGATGCTGGTATGCTTACTTTCCTTTTTGCATGTTTCCTTTTGGATTAGGTTTTACCATTGGCTCTGAATACTTTGTTATCATTAGAATTGTTATTATCATTTTGTTTACAGCATGGTTAGATATTAAAGCATTCTTTTGTCGTATCTTATGCATGAACTTACTTGGTTTTGCAGAGAAATTCAGGTCAGACCTGATGAACATTGCAAGGACTACTTTGAGCTCCAAAATTCTCTCACAAGACAAGGAGCATTTTGCTAAATTAGCTGTAGATGCTGTAATGAGATTAAAGGTGAACAGTCACTACCCTACTAATACAGAGTTCCATTTTTGGGGATTTAGCTAATAGTGCATGCATTGTTGCCATGATTTCTCCATAGTGTATGCATTGTTGCCATGTTTTCTCCATTGGTCCAACTGTGGAAAAACTATTGGCTTATTTTTGAGCTTATGCAAATAAATAAGATCTTATGTATTATTTATCCATAAGCTTGTCGAGGTAGTTTATGAAAAAACAGCACATGAAGATACAGTTTTTCGTTAGTGAGAACTTATGAATTAACATAAAAGCTTATTTATTTTCATAAGATATTCTTCATAAGCTATAAAATAAGTCGATCCAAACAGGCCCAAAAATTAGTTACAAATTTGATCTATATACTTTTCTGCATGCTTTGGCTAGTAAATACTTTAAATTTTATTTTATTTAGAAGTTTGGTTACAATGTTTTATATGATCCTGTAGTTTATAATCCATTCTTATGATGTGAGTATAACCTTTCAATTTCTTTCCAATCCTTAAAAAACAGTTTTTTGAGTTTTCTAATATAATTTCATGATAGCTTGTTCGAGCCTTGAATGCTCCATAAAAAGTATTCACTGAAATAACGGGTTCAACTAGGTTATATTTTTGGCAGGTTATAGCAGTATTTCATTTGTGGGGATGGTTTTTCCTTTTCTCCCTAATGGTTTAAAAGTACACAATGTTCTGGTTTTCATTCTATACAGTTTATTCATTTTTTTGTACTTCTGTGCTAGCGGCCTAGCCATGCATCAGGATTTTTTTTTCTTTCCCATAGTGATCTCTATTATTATGAAATTAACTATATGCATTTTCACATTTTAATTTCCTTTTTTAAATTACAGGGAAGCACAAATTTAGAATCTGTCCAGATTATAAAGAAGCCTGGAGGATCACTGATAGACTCATTTTTAGATGAAGGGTAATATCGCTGAGTAGTTCCACATTTTTTAGTTTGAGTATCAAATGATTCTATTCTATCTTTTTTTAAATCCTGGGGTTTTTCTTTTGTATTGAGTTGCATAGGTAGCCTTCAAGTAACTTGAATAAACTCAAATGATCTCCAACTTCACCACTACCTGTATAATGAACTATTTACATTAGTCTTGGTAAAAAATAATATCTCTGTTTCTAAATTGGATTATACTTTGGTTTAGATTTATTCTTGACAAGAAAATTGGTCTCGGACAACCCAAACGCATAGAGAATGCAAAGATACTGGTTGCAAACACTGCCATGGACACAGACAAGGTGAAGATATACGGAGCTCGTGTTCGTGTTGACTCTATGGCTAAAGTTGCTGAGATTGAAGGAGCCGAGAAGGAGAAAATGAAAGAAAAGGTGAACAAGATCATAGGTCATGGCATCAACTGTTTTGTTAACAGACAATTGATCTACAATTTTCCAGAGGAGCTCTTTGCTGATGCGGGAATACTTGCTATTGAACATGCTGATTTTGATGGTATTGAGCGTTTGGCTCTGGTAACTGGTGGTGAAATCGCGTCAACCTTTGACAACCCTGAGTCTGTTAAGCTTGGGCAGTGTGAACTTATTGAAGAGATTATGATTGGTGAGGATAAATTGATTAAGTTTTCTGGTGTTGCAATGGGGCAGGCATGTACAATAGTTTTGAGAGGTGCTAGGTACTTTTTCTTCTTTTGTTATTTTAAATTCCTTTCTGACGTTCTTTTACATATTCAGGGATTATAATCTTGATACCATATAACTTCAGATCATTTTTCTTTTAGGCTTTGTTTGGAAGGGAGGGCAAGCGAGGTTTTTTTTTTTTTTTTTTTGGGGGGCGGGGTGAGAAATATAAAGTGGATAAATCTTTCACAATTTTTTGAAAGAGCAATTTTTAGATTGAATTTAAAAAATCCAACACACAGGAAAAAAAAAAAAAATCCTCCAATACAATTTTTGGGTTCCCCCTAATGAGAGGGATTTTGTATTATGAATTAAAATTAACCCCCAAAGTCCTCTCCTCCGGTCCTCCCAATGTCTTCTATTTTTTCCACTTGCTCCTTCCTATTTTCCTAAACCCTCCTCTCCCCTCCAAACTCCCAAACAAAGCCTAAGGTTTTCTTATTCTAGCAGTATTTGTTTGTAATATTTCACTATTTATTCATGATATTAGTATTTCATAGGAATTGCTTAATACAAATGACCCTTTTATTCAGTTTCAGTTCTGGTTTATTAAAGGTTAATGTATAGGATTCTAATTTTTATTTGTTTGTTTAAAATATTTTATATTTAATAAATTGCAGCTAATAATTATTAAGTCCAATGATTTAACTGGACTGCTGAAATGTTGGATTTTTTTTTTTTTTGACAAATGCTGGAATGTTGGACATTAATTGCTTTCATGCAAACTTAGTTTATGCCCTTATATTTATGTTGCCCCGCTCCTTACCATTTATTATGCTTCAGTCAGTGCCTTTGAGTGGTACATGTATGGACTTCCTTGTATGTATCAGTAGACAGCTGTTTTTTAACAAATTTGATGGGCAGTTTTTTAGTTGCACTTTCAGCCTTGACGTCTGTTTTTGTGGCAGCCACCATGTTCTTGATGAAGCCGAGAGGTCATTGCATGATGCCTTGTGTGTGCTATCTCAGACTGTCAATGACAGCAGGGTGTTGCTTGGAGGCGGGTGGCCTGAAATGGTAATGGCAAAGGAAATTGATGCATTGGCCAGGAAAACTCCAGGAAAAAAGTCTCTTGCAATGGAGGCATTTTCTCGGGCTCTCTTGGCTATACCAACAACCATTGCTGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCGGCTCCGCGCTGAGCACCAGAATGAGGGATGTACTGCTGGAATTGATGTCATCTCTGGTTCTGTAAGTACACAACAGATAATTGCGTGGATTTATTTGAGTGTGCATAATTTTGAAACGCTGCATCTTAATATATCATTCCATAATCTTTTTCTTGGTAGAAGTTCTGTTTCTGATCACTGCATTCACTCTGGTCATATCTTAGTAACTTCAGCATATAACATGAAATGTTTAATTAAAATTTGCAACATAAGTTTGTATTTTGTTTCATGGTGTCATTTCTAAATTAGATTGACTCCCTAGTGAACATGGTGGAGTTAGGATGTGTATGATAGGGACTTTGGTATCATGCGGAGCCTAAGTCCCGCATTGAATAATATGAGATGCTTGATGGAGTACCCAAGTGACTTGGTTCTTCGTCTTCTCTCATGACAACCAGATTTTAAGGAGTGCTTGAGTGTGTATCAGTGTGCAATTTATTAACTGAGTAATGAGTACATGTAACAGTGATTTTATTAAGTTCATGTTGTATTTTAAAAACGTATCCTGTAGGCTGCTAGCTCAACTTGGTTCCATTACATTTTCTGTTTGTCTTATATACTTCGACCGGTGTGTACTTCTGGTAGGTTGGAGACATGGTTGAACGGGGGATTTGTGAAGCATTCAAAGTCAAGCAGGCTGTATTGCTATCTGCAACAGAGGCAGCTGAGATGATCCTTAGAGTTGATGATATCATAACTTGTGCTCCAAGGAGGAGAGAAGACAGAATGTAA

Protein sequence

>MS.gene066566.t1

MAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECARSALVEKVVDNKGDAEKFRSDLMNIARTTLSSKILSQDKEHFAKLAVDAVMRLKGSTNLESVQIIKKPGGSLIDSFLDEGFILDKKIGLGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISRLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMILRVDDIITCAPRRREDRM