AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066566


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066566.t1 MTR_7g113470 99.800 500 1 0 1 500 28 527 0.0 1005
MS.gene066566.t1 MTR_7g067470 98.400 500 8 0 1 500 28 527 0.0 993
MS.gene066566.t1 MTR_5g087560 37.097 496 301 6 2 489 34 526 3.72e-99 310
MS.gene066566.t1 MTR_8g088270 35.742 512 298 9 2 489 30 534 2.61e-89 283
MS.gene066566.t1 MTR_3g109925 35.259 502 306 7 2 490 35 530 3.07e-84 270
MS.gene066566.t1 MTR_3g086330 34.406 497 314 7 2 490 39 531 8.46e-84 269
MS.gene066566.t1 MTR_3g109925 32.323 495 273 7 2 490 35 473 1.74e-67 224
MS.gene066566.t1 MTR_7g406870 30.159 504 330 8 2 489 28 525 6.86e-62 211
MS.gene066566.t1 MTR_2g013540 30.616 503 327 12 2 490 30 524 2.67e-61 210
MS.gene066566.t1 MTR_6g032870 28.715 498 342 8 3 493 33 524 7.59e-52 184
MS.gene066566.t1 MTR_1g030650 28.112 498 345 8 3 493 36 527 2.07e-51 183
MS.gene066566.t1 MTR_7g406870 28.297 417 279 7 89 489 1 413 1.02e-39 149
MS.gene066566.t1 MTR_3g465910 87.179 78 9 1 354 431 459 535 5.49e-34 135
MS.gene066566.t1 MTR_8g105970 31.757 296 175 9 162 451 75 349 5.51e-34 132
MS.gene066566.t1 MTR_2g013540 26.190 378 262 8 127 490 1 375 7.51e-30 121
MS.gene066566.t1 MTR_3g466600 88.235 51 6 0 404 454 1 51 3.83e-23 93.2
MS.gene066566.t1 MTR_3g465900 86.957 46 5 1 456 500 1 46 2.00e-17 81.6
MS.gene066566.t1 MTR_1g090140 24.094 552 320 20 3 498 54 562 6.83e-14 74.7
MS.gene066566.t1 MTR_8g017080 23.585 530 318 17 3 482 55 547 3.05e-12 69.3
MS.gene066566.t1 MTR_1g090130 22.794 544 337 18 3 498 54 562 3.66e-12 68.9
MS.gene066566.t1 MTR_0991s0010 37.736 106 60 2 3 104 69 172 1.72e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066566.t1 AT5G20890 88.800 500 56 0 1 500 28 527 0.0 889
MS.gene066566.t1 AT3G11830 37.097 496 301 6 2 489 34 526 2.09e-95 300
MS.gene066566.t1 AT3G20050 35.938 512 297 9 2 489 30 534 6.61e-95 298
MS.gene066566.t1 AT3G11830 36.895 496 300 7 2 489 34 524 3.52e-93 294
MS.gene066566.t1 AT3G18190 35.857 502 303 8 2 490 39 534 8.22e-89 282
MS.gene066566.t1 AT1G24510 33.797 503 309 9 2 490 39 531 1.14e-81 263
MS.gene066566.t1 AT1G24510 32.632 475 298 8 30 490 12 478 1.07e-71 236
MS.gene066566.t1 AT1G24510 31.965 463 293 8 42 490 1 455 3.82e-66 221
MS.gene066566.t1 AT3G02530 30.512 508 323 11 2 489 28 525 2.62e-62 213
MS.gene066566.t1 AT5G16070 31.214 519 320 15 2 497 28 532 8.94e-62 211
MS.gene066566.t1 AT5G26360 30.219 503 329 11 2 490 30 524 7.53e-57 198
MS.gene066566.t1 AT3G03960 29.116 498 340 9 3 493 39 530 2.31e-51 183
MS.gene066566.t1 AT2G33210 24.908 546 317 24 3 495 54 559 1.15e-16 83.2
MS.gene066566.t1 AT3G23990 24.723 542 321 20 3 494 53 557 3.93e-16 81.6
MS.gene066566.t1 AT2G33210 24.769 541 319 23 3 495 54 554 2.74e-15 79.0

Find 109 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTGCCATTACCATTTC+AGG 0.181073 7.4:+3315215 None:intergenic
CTTGTCTTGTGAGAGAATTT+TGG 0.234265 7.4:+3317946 None:intergenic
CTTTGCATTCTCTATGCGTT+TGG 0.270372 7.4:+3316678 None:intergenic
TTTATTCTTGACAAGAAAAT+TGG 0.289639 7.4:-3316712 MS.gene066566:CDS
GAGCGTTTGGCTCTGGTAAC+TGG 0.312271 7.4:-3316403 MS.gene066566:CDS
CTCCAGGCTTCTTTATAATC+TGG 0.321069 7.4:+3317002 None:intergenic
TCGTGTTCGTGTTGACTCTA+TGG 0.326461 7.4:-3316602 MS.gene066566:CDS
TTTGCATTCTCTATGCGTTT+GGG 0.352812 7.4:+3316679 None:intergenic
CAGCAGTACATCCCTCATTC+TGG 0.365145 7.4:+3315045 None:intergenic
AGATGCTGTAATGAGATTAA+AGG 0.378997 7.4:-3317900 MS.gene066566:intron
CATCCCATGACTATAATTGC+AGG 0.379746 7.4:-3318255 MS.gene066566:CDS
GGCCATGGCTATTGCTGACT+TGG 0.384996 7.4:-3318526 None:intergenic
GGTTGGAGACATGGTTGAAC+GGG 0.390613 7.4:-3314437 MS.gene066566:CDS
ATTCTGTCTTCTCTCCTCCT+TGG 0.391078 7.4:+3314316 None:intergenic
ATCCATTCCCTTTGGGCCTA+AGG 0.391153 7.4:+3318494 None:intergenic
TTATGATATCATCAACTCTA+AGG 0.402837 7.4:+3314347 None:intergenic
AGCAGGGTGTTGCTTGGAGG+CGG 0.406361 7.4:-3315242 MS.gene066566:CDS
GCATTATCAGCAATGGTTGT+TGG 0.407647 7.4:+3315113 None:intergenic
CATTGCTGATAATGCTGGTT+TGG 0.419056 7.4:-3315105 MS.gene066566:CDS
AACTACCTCTGTTGTTGTAT+TGG 0.419643 7.4:-3318325 MS.gene066566:CDS
CATAGAGAATGCAAAGATAC+TGG 0.422234 7.4:-3316671 MS.gene066566:CDS
CTTATTGAAGAGATTATGAT+TGG 0.428527 7.4:-3316322 MS.gene066566:CDS
TTCTGGTGTTGCAATGGGGC+AGG 0.444806 7.4:-3316278 MS.gene066566:CDS
CTTCACCTTGTCTGTGTCCA+TGG 0.445280 7.4:+3316636 None:intergenic
ACAGACAAGGTGAAGATATA+CGG 0.446868 7.4:-3316628 MS.gene066566:CDS
TGGAGGCGGGTGGCCTGAAA+TGG 0.452003 7.4:-3315228 MS.gene066566:CDS
GAGGAGCTCTTTGCTGATGC+GGG 0.457731 7.4:-3316463 MS.gene066566:CDS
GCATCAGCAAAGAGCTCCTC+TGG 0.457957 7.4:+3316466 None:intergenic
TAGTCCTTGCAATGTTCATC+AGG 0.458776 7.4:+3317978 None:intergenic
ACAGTGCTGAGTTGATTTCT+CGG 0.458993 7.4:-3315082 MS.gene066566:CDS
GCTGGAATTGATGTCATCTC+TGG 0.462467 7.4:-3315026 MS.gene066566:CDS
GCAGGGTGTTGCTTGGAGGC+GGG 0.468045 7.4:-3315241 MS.gene066566:CDS
ACCTCTGTTGTTGTATTGGC+TGG 0.470611 7.4:-3318321 MS.gene066566:CDS
AACCCTGAGTCTGTTAAGCT+TGG 0.475389 7.4:-3316355 MS.gene066566:CDS
CTCAGACTGTCAATGACAGC+AGG 0.476182 7.4:-3315259 MS.gene066566:CDS
GCTAAAGTTGCTGAGATTGA+AGG 0.478957 7.4:-3316580 MS.gene066566:CDS
TGCCCAAGCTTAACAGACTC+AGG 0.481251 7.4:+3316352 None:intergenic
GGCAAAGGAAATTGATGCAT+TGG 0.483080 7.4:-3315201 MS.gene066566:CDS
CAGAATGAGGGATGTACTGC+TGG 0.484170 7.4:-3315044 MS.gene066566:CDS
GAAGGAGAAAATGAAAGAAA+AGG 0.485024 7.4:-3316551 MS.gene066566:CDS
AAAGTTCAAGATGATGAAGT+TGG 0.486158 7.4:-3318354 MS.gene066566:CDS
CCGCGCTGAGCACCAGAATG+AGG 0.489347 7.4:-3315057 MS.gene066566:CDS
GAAAAGGTGAACAAGATCAT+AGG 0.494619 7.4:-3316535 MS.gene066566:CDS
TACCTTAGGCCCAAAGGGAA+TGG 0.504259 7.4:-3318496 MS.gene066566:CDS
ACCCTGAGTCTGTTAAGCTT+GGG 0.506927 7.4:-3316354 MS.gene066566:CDS
TGGTATTGAGCGTTTGGCTC+TGG 0.508693 7.4:-3316410 MS.gene066566:CDS
CTTGACAAGAAAATTGGTCT+CGG 0.509152 7.4:-3316706 MS.gene066566:CDS
GAAACCTGCAATTATAGTCA+TGG 0.510564 7.4:+3318251 None:intergenic
GGCATCATGCAATGACCTCT+CGG 0.511037 7.4:+3315295 None:intergenic
GTCCAGATTATAAAGAAGCC+TGG 0.511659 7.4:-3317004 MS.gene066566:CDS
CATTAGTGACAGTAACTTCA+CGG 0.513830 7.4:+3318445 None:intergenic
TGAGTGTGCTCGTAGTGCTT+TGG 0.514026 7.4:-3318217 MS.gene066566:CDS
TCGACGAGGACTTTAGCAGC+TGG 0.514395 7.4:+3318384 None:intergenic
ACAACCATTGCTGATAATGC+TGG 0.517593 7.4:-3315110 MS.gene066566:CDS
AGGAAATTGATGCATTGGCC+AGG 0.519392 7.4:-3315196 MS.gene066566:CDS
GACAGCAGGGTGTTGCTTGG+AGG 0.524224 7.4:-3315245 MS.gene066566:CDS
CGCGCTGAGCACCAGAATGA+GGG 0.529599 7.4:-3315056 MS.gene066566:CDS
GAGCACACTCAGCCGCCATT+CGG 0.530966 7.4:+3318229 None:intergenic
CTTCTGGTAGGTTGGAGACA+TGG 0.533014 7.4:-3314446 MS.gene066566:intron
GACTTGGTTAAGACTACCTT+AGG 0.535018 7.4:-3318510 MS.gene066566:CDS
CGGGTGGCCTGAAATGGTAA+TGG 0.539649 7.4:-3315222 MS.gene066566:CDS
GGGTGTTGCTTGGAGGCGGG+TGG 0.542712 7.4:-3315238 MS.gene066566:CDS
TGAAGCATTCAAAGTCAAGC+AGG 0.543590 7.4:-3314407 MS.gene066566:CDS
CGACGAGGACTTTAGCAGCT+GGG 0.549343 7.4:+3318385 None:intergenic
TGTATTGCTATCTGCAACAG+AGG 0.550363 7.4:-3314383 MS.gene066566:CDS
AAGACTACCTTAGGCCCAAA+GGG 0.550690 7.4:-3318501 MS.gene066566:CDS
AATGACAGCAGGGTGTTGCT+TGG 0.551264 7.4:-3315248 MS.gene066566:CDS
AGAGGAGCTCTTTGCTGATG+CGG 0.551374 7.4:-3316464 MS.gene066566:CDS
TGAGATTGAAGGAGCCGAGA+AGG 0.556086 7.4:-3316569 MS.gene066566:CDS
TGCTTTGGTAGAGAAGGTTG+TGG 0.556420 7.4:-3318202 MS.gene066566:CDS
GTGGACAACAAAGGAGATGC+TGG 0.557280 7.4:-3318183 MS.gene066566:intron
AGCTGGGTTATCAATGTGAA+GGG 0.569702 7.4:+3318401 None:intergenic
CAAGATGATGAAGTTGGCGA+TGG 0.570613 7.4:-3318348 MS.gene066566:CDS
TCGTAGTGCTTTGGTAGAGA+AGG 0.572237 7.4:-3318208 MS.gene066566:CDS
AAACCTGCAATTATAGTCAT+GGG 0.572960 7.4:+3318252 None:intergenic
GCCTGAAATGGTAATGGCAA+AGG 0.576296 7.4:-3315216 MS.gene066566:CDS
CAGCTGGGTTATCAATGTGA+AGG 0.577404 7.4:+3318400 None:intergenic
TGAAGAGATTATGATTGGTG+AGG 0.578048 7.4:-3316317 MS.gene066566:CDS
AACAGACTCAGGGTTGTCAA+AGG 0.580150 7.4:+3316363 None:intergenic
GAGTCTATCAGTGATCCTCC+AGG 0.581503 7.4:+3316986 None:intergenic
CAAAATTCTCTCACAAGACA+AGG 0.582057 7.4:-3317945 MS.gene066566:CDS
GCATTGGCCAGGAAAACTCC+AGG 0.585369 7.4:-3315185 MS.gene066566:CDS
AGGTTGGAGACATGGTTGAA+CGG 0.592539 7.4:-3314438 MS.gene066566:CDS
GTGAACAAGATCATAGGTCA+TGG 0.596754 7.4:-3316529 MS.gene066566:CDS
TAAGACTACCTTAGGCCCAA+AGG 0.597137 7.4:-3318502 MS.gene066566:CDS
GAAGTTACTGTCACTAATGA+CGG 0.601731 7.4:-3318441 MS.gene066566:CDS
ATATCATAACTTGTGCTCCA+AGG 0.603826 7.4:-3314333 MS.gene066566:CDS
CAAACCAGCATTATCAGCAA+TGG 0.610258 7.4:+3315106 None:intergenic
CACTGCCATGGACACAGACA+AGG 0.617081 7.4:-3316641 MS.gene066566:CDS
ACTGGTTGCAAACACTGCCA+TGG 0.617479 7.4:-3316653 MS.gene066566:CDS
AATTGCAGGTTTCCGAATGG+CGG 0.618540 7.4:-3318241 MS.gene066566:CDS
GTTGGAGACATGGTTGAACG+GGG 0.628503 7.4:-3314436 MS.gene066566:CDS
CAGACCTGATGAACATTGCA+AGG 0.630815 7.4:-3317982 MS.gene066566:CDS
AACCAAGTCAGCAATAGCCA+TGG 0.632695 7.4:+3318524 None:intergenic
GAGAAGGTTGTGGACAACAA+AGG 0.635725 7.4:-3318192 MS.gene066566:CDS
GCCCAAGCTTAACAGACTCA+GGG 0.636349 7.4:+3316353 None:intergenic
TATAATTGCAGGTTTCCGAA+TGG 0.638845 7.4:-3318244 MS.gene066566:CDS
TCAGACTGTCAATGACAGCA+GGG 0.640090 7.4:-3315258 MS.gene066566:CDS
TCTCGGCTTCATCAAGAACA+TGG 0.640574 7.4:+3315312 None:intergenic
CCTCATTCTGGTGCTCAGCG+CGG 0.652189 7.4:+3315057 None:intergenic
CGTTTGGCTCTGGTAACTGG+TGG 0.662358 7.4:-3316400 MS.gene066566:CDS
CGGCTTCATCAAGAACATGG+TGG 0.674569 7.4:+3315315 None:intergenic
TTGGAGACATGGTTGAACGG+GGG 0.675738 7.4:-3314435 MS.gene066566:CDS
TCATAACTTGTGCTCCAAGG+AGG 0.689519 7.4:-3314330 MS.gene066566:CDS
AGTCTGAGATAGCACACACA+AGG 0.707210 7.4:+3315274 None:intergenic
GCCAGCCAATACAACAACAG+AGG 0.723732 7.4:+3318320 None:intergenic
ATGTTCTTGATGAAGCCGAG+AGG 0.725787 7.4:-3315310 MS.gene066566:CDS
CAGATTATAAAGAAGCCTGG+AGG 0.728244 7.4:-3317001 MS.gene066566:CDS
GAACTTTAGAAATGTCGACG+AGG 0.762938 7.4:+3318370 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGTTTTTTTTTTTTTTTTTT+TGG - chr7.4:3316739-3316758 MS.gene066566:intron 10.0%
!!! TTTTATTTTATTTAGAAGTT+TGG - chr7.4:3315359-3315378 MS.gene066566:intron 10.0%
!!! TTTTTTTTTTTTTTTTTTGG+GGG - chr7.4:3316742-3316761 MS.gene066566:intron 10.0%
!! TTTATTAAAGGTTAATGTAT+AGG - chr7.4:3317156-3317175 MS.gene066566:intron 15.0%
!!! AATTTCCTTTTTTAAATTAC+AGG - chr7.4:3315787-3315806 MS.gene066566:intron 15.0%
!!! ATTTCCTTTTTTAAATTACA+GGG - chr7.4:3315788-3315807 MS.gene066566:intron 15.0%
!!! CAAATTTGTAACTAATTTTT+GGG + chr7.4:3315295-3315314 None:intergenic 15.0%
!!! TCAAATTTGTAACTAATTTT+TGG + chr7.4:3315296-3315315 None:intergenic 15.0%
!!! TGTTTTTTAACAAATTTGAT+GGG - chr7.4:3317449-3317468 MS.gene066566:intron 15.0%
!!! TTTTTTTTTTTTTTTTTGGG+GGG - chr7.4:3316743-3316762 MS.gene066566:intron 15.0%
!! ATAATAATAGAGATCACTAT+GGG + chr7.4:3315738-3315757 None:intergenic 20.0%
!! ATGTAAATAGTTCATTATAC+AGG + chr7.4:3316045-3316064 None:intergenic 20.0%
!! TCATGATATTAGTATTTCAT+AGG - chr7.4:3317089-3317108 MS.gene066566:intron 20.0%
!! TTCTAAATTGGATTATACTT+TGG - chr7.4:3316093-3316112 MS.gene066566:intron 20.0%
!! TTTATTCTTGACAAGAAAAT+TGG - chr7.4:3316122-3316141 MS.gene066566:intron 20.0%
!!! AAAAACTGTTTTTTAAGGAT+TGG + chr7.4:3315457-3315476 None:intergenic 20.0%
!!! AAAAATGATCTGAAGTTATA+TGG + chr7.4:3316685-3316704 None:intergenic 20.0%
!!! AAAAGTATTCACTGAAATAA+CGG - chr7.4:3315531-3315550 MS.gene066566:intron 20.0%
!!! ACTCAAAAAACTGTTTTTTA+AGG + chr7.4:3315462-3315481 None:intergenic 20.0%
!!! ATTTCAGTGAATACTTTTTA+TGG + chr7.4:3315529-3315548 None:intergenic 20.0%
!!! CTGTTTTTTAACAAATTTGA+TGG - chr7.4:3317448-3317467 MS.gene066566:intron 20.0%
!!! GATAAATTGATTAAGTTTTC+TGG - chr7.4:3316539-3316558 MS.gene066566:CDS 20.0%
!!! TAAGTTTGTATTTTGTTTCA+TGG - chr7.4:3318022-3318041 MS.gene066566:intron 20.0%
!!! TAATATCTCTGTTTCTAAAT+TGG - chr7.4:3316081-3316100 MS.gene066566:intron 20.0%
!!! TCTATCTTTTTTTAAATCCT+GGG - chr7.4:3315940-3315959 MS.gene066566:intron 20.0%
!!! TTCTATCTTTTTTTAAATCC+TGG - chr7.4:3315939-3315958 MS.gene066566:intron 20.0%
!!! TTTTTTTTTTTGACAAATGC+TGG - chr7.4:3317283-3317302 MS.gene066566:intron 20.0%
! AAGACAAACAGAAAATGTAA+TGG + chr7.4:3318347-3318366 None:intergenic 25.0%
! AGAACTGAAACTGAATAAAA+GGG + chr7.4:3317134-3317153 None:intergenic 25.0%
! ATTAAGTCCAATGATTTAAC+TGG - chr7.4:3317240-3317259 MS.gene066566:intron 25.0%
! ATTTAAAAAATCCAACACAC+AGG - chr7.4:3316831-3316850 MS.gene066566:intron 25.0%
! CATAATAATAGAGATCACTA+TGG + chr7.4:3315739-3315758 None:intergenic 25.0%
! CTTATTGAAGAGATTATGAT+TGG - chr7.4:3316512-3316531 MS.gene066566:CDS 25.0%
! GATACTCAAACTAAAAAATG+TGG + chr7.4:3315908-3315927 None:intergenic 25.0%
! TATAGCAGTATTTCATTTGT+GGG - chr7.4:3315582-3315601 MS.gene066566:intron 25.0%
! TGGAAAAAATAGAAGACATT+GGG + chr7.4:3316961-3316980 None:intergenic 25.0%
! TTATACTCACATCATAAGAA+TGG + chr7.4:3315419-3315438 None:intergenic 25.0%
! TTATAGCAGTATTTCATTTG+TGG - chr7.4:3315581-3315600 MS.gene066566:intron 25.0%
! TTATGATATCATCAACTCTA+AGG + chr7.4:3318490-3318509 None:intergenic 25.0%
! TTCTACCAAGAAAAAGATTA+TGG + chr7.4:3317915-3317934 None:intergenic 25.0%
!! AAAATTTTATCCATTCCCTT+TGG + chr7.4:3314351-3314370 None:intergenic 25.0%
!! AAAGTATTCACTGAAATAAC+GGG - chr7.4:3315532-3315551 MS.gene066566:intron 25.0%
!! AAATCCTCCAATACAATTTT+TGG - chr7.4:3316865-3316884 MS.gene066566:intron 25.0%
!! AAATTTTATCCATTCCCTTT+GGG + chr7.4:3314350-3314369 None:intergenic 25.0%
!! AATCCTCCAATACAATTTTT+GGG - chr7.4:3316866-3316885 MS.gene066566:intron 25.0%
!! AGTTTATTCAAGTTACTTGA+AGG + chr7.4:3315997-3316016 None:intergenic 25.0%
!! GTTCAACTAGGTTATATTTT+TGG - chr7.4:3315554-3315573 MS.gene066566:intron 25.0%
!! TCATTCCATAATCTTTTTCT+TGG - chr7.4:3317907-3317926 MS.gene066566:CDS 25.0%
!! TGAACTATTTACATTAGTCT+TGG - chr7.4:3316051-3316070 MS.gene066566:intron 25.0%
!! TGTGTACTTTTAAACCATTA+GGG + chr7.4:3315626-3315645 None:intergenic 25.0%
!! TTGTGTACTTTTAAACCATT+AGG + chr7.4:3315627-3315646 None:intergenic 25.0%
!! TTTAAAAGTACACAATGTTC+TGG - chr7.4:3315632-3315651 MS.gene066566:intron 25.0%
!!! AAGAATGGATTATAAACTAC+AGG + chr7.4:3315404-3315423 None:intergenic 25.0%
!!! ATAGACTCATTTTTAGATGA+AGG - chr7.4:3315863-3315882 MS.gene066566:intron 25.0%
!!! CTATCTTTTTTTAAATCCTG+GGG - chr7.4:3315941-3315960 MS.gene066566:intron 25.0%
!!! CTTCAGATCATTTTTCTTTT+AGG - chr7.4:3316690-3316709 MS.gene066566:CDS 25.0%
!!! TAATACAGAGTTCCATTTTT+GGG - chr7.4:3314976-3314995 MS.gene066566:intron 25.0%
!!! TAGACTCATTTTTAGATGAA+GGG - chr7.4:3315864-3315883 MS.gene066566:intron 25.0%
!!! TTATCATTTTGTTTACAGCA+TGG - chr7.4:3314759-3314778 MS.gene066566:intron 25.0%
!!! TTTCAGTTCTGGTTTATTAA+AGG - chr7.4:3317144-3317163 MS.gene066566:intron 25.0%
!!! TTTTTCTTTTAGGCTTTGTT+TGG - chr7.4:3316700-3316719 MS.gene066566:CDS 25.0%
!!! TTTTTTTTTTTCCTGTGTGT+TGG + chr7.4:3316845-3316864 None:intergenic 25.0%
AAAAAATAGAAGACATTGGG+AGG + chr7.4:3316958-3316977 None:intergenic 30.0%
AAACCTGCAATTATAGTCAT+GGG + chr7.4:3314585-3314604 None:intergenic 30.0%
AAAGTTCAAGATGATGAAGT+TGG - chr7.4:3314480-3314499 MS.gene066566:intron 30.0%
AAATGGAACTCTGTATTAGT+AGG + chr7.4:3314974-3314993 None:intergenic 30.0%
AATACAAAATCCCTCTCATT+AGG + chr7.4:3316897-3316916 None:intergenic 30.0%
AATGGAACTCTGTATTAGTA+GGG + chr7.4:3314973-3314992 None:intergenic 30.0%
ACTGACTGAAGCATAATAAA+TGG + chr7.4:3317379-3317398 None:intergenic 30.0%
AGATGCTGTAATGAGATTAA+AGG - chr7.4:3314934-3314953 MS.gene066566:intron 30.0%
AGGATTGGAAAGAAATTGAA+AGG + chr7.4:3315442-3315461 None:intergenic 30.0%
ATACAAAATCCCTCTCATTA+GGG + chr7.4:3316896-3316915 None:intergenic 30.0%
ATAGCAGTATTTCATTTGTG+GGG - chr7.4:3315583-3315602 MS.gene066566:intron 30.0%
ATAGTTCATTATACAGGTAG+TGG + chr7.4:3316039-3316058 None:intergenic 30.0%
ATCTTATGCATGAACTTACT+TGG - chr7.4:3314809-3314828 MS.gene066566:intron 30.0%
ATGGTAAAACCTAATCCAAA+AGG + chr7.4:3314704-3314723 None:intergenic 30.0%
ATTAGCTAAATCCCCAAAAA+TGG + chr7.4:3314991-3315010 None:intergenic 30.0%
CAGAACTGAAACTGAATAAA+AGG + chr7.4:3317135-3317154 None:intergenic 30.0%
CATCTCATATTATTCAATGC+GGG + chr7.4:3318138-3318157 None:intergenic 30.0%
CTGAAGCATAATAAATGGTA+AGG + chr7.4:3317374-3317393 None:intergenic 30.0%
GAAAAAAAAATCCTGATGCA+TGG + chr7.4:3315712-3315731 None:intergenic 30.0%
GAAGGAGAAAATGAAAGAAA+AGG - chr7.4:3316283-3316302 MS.gene066566:CDS 30.0%
GAATAATATGAGATGCTTGA+TGG - chr7.4:3318143-3318162 MS.gene066566:intron 30.0%
GCATCTCATATTATTCAATG+CGG + chr7.4:3318139-3318158 None:intergenic 30.0%
GCTTCCCTGTAATTTAAAAA+AGG + chr7.4:3315795-3315814 None:intergenic 30.0%
GTGGAAAAAATAGAAGACAT+TGG + chr7.4:3316962-3316981 None:intergenic 30.0%
TAAAATAAGTCGATCCAAAC+AGG - chr7.4:3315269-3315288 MS.gene066566:CDS 30.0%
TATGTAAAAGAACGTCAGAA+AGG + chr7.4:3316640-3316659 None:intergenic 30.0%
TGCTAGAATAAGAAAACCTT+AGG + chr7.4:3317040-3317059 None:intergenic 30.0%
TTTAAACCATTAGGGAGAAA+AGG + chr7.4:3315618-3315637 None:intergenic 30.0%
TTTGTCTTATATACTTCGAC+CGG - chr7.4:3318359-3318378 MS.gene066566:CDS 30.0%
! ATATACTTTTCTGCATGCTT+TGG - chr7.4:3315319-3315338 MS.gene066566:intron 30.0%
! ATTGATCTACAATTTTCCAG+AGG - chr7.4:3316352-3316371 MS.gene066566:CDS 30.0%
! CTAATACAGAGTTCCATTTT+TGG - chr7.4:3314975-3314994 MS.gene066566:intron 30.0%
! CTTTTATTCAGTTTCAGTTC+TGG - chr7.4:3317133-3317152 MS.gene066566:intron 30.0%
! GACGTTCTTTTACATATTCA+GGG - chr7.4:3316644-3316663 MS.gene066566:CDS 30.0%
! GATAAAATTTTGCAGTCAAC+AGG - chr7.4:3314360-3314379 MS.gene066566:CDS 30.0%
! TGACGTTCTTTTACATATTC+AGG - chr7.4:3316643-3316662 MS.gene066566:CDS 30.0%
! TTCTTTCATTTTCTCCTTCT+CGG + chr7.4:3316282-3316301 None:intergenic 30.0%
!! AATACAGAGTTCCATTTTTG+GGG - chr7.4:3314977-3314996 MS.gene066566:intron 30.0%
!! TACTTTTTATGGAGCATTCA+AGG + chr7.4:3315518-3315537 None:intergenic 30.0%
!! TCTTTTGTATTGAGTTGCAT+AGG - chr7.4:3315968-3315987 MS.gene066566:intron 30.0%
!! TTTGGATTAGGTTTTACCAT+TGG - chr7.4:3314704-3314723 MS.gene066566:intron 30.0%
!!! AACTAGGTTATATTTTTGGC+AGG - chr7.4:3315558-3315577 MS.gene066566:intron 30.0%
!!! ATTGAACATGCTGATTTTGA+TGG - chr7.4:3316404-3316423 MS.gene066566:CDS 30.0%
!!! TTTTTTTTTTTTTTGGGGGG+CGG - chr7.4:3316746-3316765 MS.gene066566:intron 30.0%
AAAAAAGTCTCTTGCAATGG+AGG - chr7.4:3317672-3317691 MS.gene066566:intron 35.0%
AACTACCTCTGTTGTTGTAT+TGG - chr7.4:3314509-3314528 MS.gene066566:intron 35.0%
ACAGACAAGGTGAAGATATA+CGG - chr7.4:3316206-3316225 MS.gene066566:intron 35.0%
AGGAAAAAAGTCTCTTGCAA+TGG - chr7.4:3317669-3317688 MS.gene066566:intron 35.0%
ATAATAAATGGTAAGGAGCG+GGG + chr7.4:3317367-3317386 None:intergenic 35.0%
ATTTATCCATAAGCTTGTCG+AGG - chr7.4:3315141-3315160 MS.gene066566:CDS 35.0%
CAAAATTCTCTCACAAGACA+AGG - chr7.4:3314889-3314908 MS.gene066566:intron 35.0%
CAATACAAAAGAAAAACCCC+AGG + chr7.4:3315960-3315979 None:intergenic 35.0%
CATAATAAATGGTAAGGAGC+GGG + chr7.4:3317368-3317387 None:intergenic 35.0%
CATACACTATGGAGAAATCA+TGG + chr7.4:3315030-3315049 None:intergenic 35.0%
CATAGAGAATGCAAAGATAC+TGG - chr7.4:3316163-3316182 MS.gene066566:intron 35.0%
CATTAGTGACAGTAACTTCA+CGG + chr7.4:3314392-3314411 None:intergenic 35.0%
CCAAAAGGAAACATGCAAAA+AGG + chr7.4:3314689-3314708 None:intergenic 35.0%
GAAAAGGTGAACAAGATCAT+AGG - chr7.4:3316299-3316318 MS.gene066566:CDS 35.0%
GAAACCTGCAATTATAGTCA+TGG + chr7.4:3314586-3314605 None:intergenic 35.0%
GAACCCAAAAATTGTATTGG+AGG + chr7.4:3316872-3316891 None:intergenic 35.0%
GAAGTTACTGTCACTAATGA+CGG - chr7.4:3314393-3314412 MS.gene066566:CDS 35.0%
GAGTTAGGATGTGTATGATA+GGG - chr7.4:3318086-3318105 MS.gene066566:intron 35.0%
GCATAATAAATGGTAAGGAG+CGG + chr7.4:3317369-3317388 None:intergenic 35.0%
TACAAAATCCCTCTCATTAG+GGG + chr7.4:3316895-3316914 None:intergenic 35.0%
TATAATTGCAGGTTTCCGAA+TGG - chr7.4:3314590-3314609 MS.gene066566:intron 35.0%
TATTATTCAATGCGGGACTT+AGG + chr7.4:3318131-3318150 None:intergenic 35.0%
TCCAACTGTGGAAAAACTAT+TGG - chr7.4:3315076-3315095 MS.gene066566:CDS 35.0%
TGAAGAGATTATGATTGGTG+AGG - chr7.4:3316517-3316536 MS.gene066566:CDS 35.0%
TTTGACAAATGCTGGAATGT+TGG - chr7.4:3317291-3317310 MS.gene066566:intron 35.0%
TTTGCATTCTCTATGCGTTT+GGG + chr7.4:3316158-3316177 None:intergenic 35.0%
! AACAAAGTATTCAGAGCCAA+TGG + chr7.4:3314723-3314742 None:intergenic 35.0%
! ATATCATAACTTGTGCTCCA+AGG - chr7.4:3318501-3318520 MS.gene066566:CDS 35.0%
! CCTTTTTGCATGTTTCCTTT+TGG - chr7.4:3314686-3314705 MS.gene066566:intron 35.0%
! CTCATGACAACCAGATTTTA+AGG - chr7.4:3318197-3318216 MS.gene066566:CDS 35.0%
! CTTGACAAGAAAATTGGTCT+CGG - chr7.4:3316128-3316147 MS.gene066566:intron 35.0%
! CTTGTCTTGTGAGAGAATTT+TGG + chr7.4:3314891-3314910 None:intergenic 35.0%
! GTTTTTCCTTTTCTCCCTAA+TGG - chr7.4:3315609-3315628 MS.gene066566:intron 35.0%
! TGCATGTTTCCTTTTGGATT+AGG - chr7.4:3314692-3314711 MS.gene066566:intron 35.0%
! TTTTTGTACTTCTGTGCTAG+CGG - chr7.4:3315681-3315700 MS.gene066566:intron 35.0%
!! AACTAATTTTTGGGCCTGTT+TGG + chr7.4:3315286-3315305 None:intergenic 35.0%
!! AGAAAACCTTAGGCTTTGTT+TGG + chr7.4:3317030-3317049 None:intergenic 35.0%
!! GAAAACCTTAGGCTTTGTTT+GGG + chr7.4:3317029-3317048 None:intergenic 35.0%
!! TTTTGATGGTATTGAGCGTT+TGG - chr7.4:3316418-3316437 MS.gene066566:CDS 35.0%
!!! AAGTTTTCTGGTGTTGCAAT+GGG - chr7.4:3316551-3316570 MS.gene066566:CDS 35.0%
!!! ATTGCAAGAGACTTTTTTCC+TGG + chr7.4:3317670-3317689 None:intergenic 35.0%
!!! CTTTTAGGCTTTGTTTGGAA+GGG - chr7.4:3316705-3316724 MS.gene066566:CDS 35.0%
!!! GCATGTACAATAGTTTTGAG+AGG - chr7.4:3316578-3316597 MS.gene066566:CDS 35.0%
!!! TAAGTTTTCTGGTGTTGCAA+TGG - chr7.4:3316550-3316569 MS.gene066566:CDS 35.0%
!!! TCTTTTAGGCTTTGTTTGGA+AGG - chr7.4:3316704-3316723 MS.gene066566:CDS 35.0%
!!! TTGGTTTTGCAGAGAAATTC+AGG - chr7.4:3314828-3314847 MS.gene066566:intron 35.0%
!!! TTTTTTTTTTTTTGGGGGGC+GGG - chr7.4:3316747-3316766 MS.gene066566:intron 35.0%
AAAAATCCTGATGCATGGCT+AGG + chr7.4:3315707-3315726 None:intergenic 40.0%
AAACTACCTCGACAAGCTTA+TGG + chr7.4:3315150-3315169 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr7.4:3317021-3317040 MS.gene066566:CDS 40.0%
ACAAAATCCCTCTCATTAGG+GGG + chr7.4:3316894-3316913 None:intergenic 40.0%
AGAGGAGGGTTTAGGAAAAT+AGG + chr7.4:3316994-3317013 None:intergenic 40.0%
AGCGGGGCAACATAAATATA+AGG + chr7.4:3317351-3317370 None:intergenic 40.0%
AGCTGGGTTATCAATGTGAA+GGG + chr7.4:3314436-3314455 None:intergenic 40.0%
ATAGGGACTTTGGTATCATG+CGG - chr7.4:3318103-3318122 MS.gene066566:intron 40.0%
CAAACCAGCATTATCAGCAA+TGG + chr7.4:3317731-3317750 None:intergenic 40.0%
CAGATTATAAAGAAGCCTGG+AGG - chr7.4:3315833-3315852 MS.gene066566:intron 40.0%
CAGCAGTCCAGTTAAATCAT+TGG + chr7.4:3317250-3317269 None:intergenic 40.0%
CAGTATTTCATTTGTGGGGA+TGG - chr7.4:3315587-3315606 MS.gene066566:intron 40.0%
CATCCCATGACTATAATTGC+AGG - chr7.4:3314579-3314598 MS.gene066566:intron 40.0%
CTCAAGCACTCCTTAAAATC+TGG + chr7.4:3318210-3318229 None:intergenic 40.0%
CTCCAGGCTTCTTTATAATC+TGG + chr7.4:3315835-3315854 None:intergenic 40.0%
CTTTGCATTCTCTATGCGTT+TGG + chr7.4:3316159-3316178 None:intergenic 40.0%
GAGGGTTTAGGAAAATAGGA+AGG + chr7.4:3316990-3317009 None:intergenic 40.0%
GATGTGTATGATAGGGACTT+TGG - chr7.4:3318093-3318112 MS.gene066566:intron 40.0%
GCATTATCAGCAATGGTTGT+TGG + chr7.4:3317724-3317743 None:intergenic 40.0%
GCGGGGCAACATAAATATAA+GGG + chr7.4:3317350-3317369 None:intergenic 40.0%
GCTAAAGTTGCTGAGATTGA+AGG - chr7.4:3316254-3316273 MS.gene066566:CDS 40.0%
GCTGTCTACTGATACATACA+AGG + chr7.4:3317429-3317448 None:intergenic 40.0%
GGAGTTAGGATGTGTATGAT+AGG - chr7.4:3318085-3318104 MS.gene066566:intron 40.0%
GGCAAAGGAAATTGATGCAT+TGG - chr7.4:3317633-3317652 MS.gene066566:intron 40.0%
GGGGAACCCAAAAATTGTAT+TGG + chr7.4:3316875-3316894 None:intergenic 40.0%
GTACACAACAGATAATTGCG+TGG - chr7.4:3317839-3317858 MS.gene066566:intron 40.0%
GTCCAGATTATAAAGAAGCC+TGG - chr7.4:3315830-3315849 MS.gene066566:intron 40.0%
GTGAACAAGATCATAGGTCA+TGG - chr7.4:3316305-3316324 MS.gene066566:CDS 40.0%
TAACTCCACCATGTTCACTA+GGG + chr7.4:3318072-3318091 None:intergenic 40.0%
TAACTGGACTGCTGAAATGT+TGG - chr7.4:3317256-3317275 MS.gene066566:intron 40.0%
TAGTCCTTGCAATGTTCATC+AGG + chr7.4:3314859-3314878 None:intergenic 40.0%
TCCATACATGTACCACTCAA+AGG + chr7.4:3317403-3317422 None:intergenic 40.0%
TCCTTTGCCATTACCATTTC+AGG + chr7.4:3317622-3317641 None:intergenic 40.0%
TGGCAACAATGCATACACTA+TGG + chr7.4:3315041-3315060 None:intergenic 40.0%
TGTATTGCTATCTGCAACAG+AGG - chr7.4:3318451-3318470 MS.gene066566:CDS 40.0%
TTGGACCAATGGAGAAAACA+TGG + chr7.4:3315061-3315080 None:intergenic 40.0%
! ACAACCATTGCTGATAATGC+TGG - chr7.4:3317724-3317743 MS.gene066566:intron 40.0%
! ATTGGCTGGCGAACTTTTAA+GGG - chr7.4:3314527-3314546 MS.gene066566:intron 40.0%
! ATTTTGCAGTCAACAGGTAG+AGG - chr7.4:3314366-3314385 MS.gene066566:CDS 40.0%
! CATTGCTGATAATGCTGGTT+TGG - chr7.4:3317729-3317748 MS.gene066566:intron 40.0%
! GAACTTTAGAAATGTCGACG+AGG + chr7.4:3314467-3314486 None:intergenic 40.0%
! GACTTGGTTAAGACTACCTT+AGG - chr7.4:3314324-3314343 MS.gene066566:CDS 40.0%
! GCCAATAGTTTTTCCACAGT+TGG + chr7.4:3315080-3315099 None:intergenic 40.0%
! TATACAGGTAGTGGTGAAGT+TGG + chr7.4:3316030-3316049 None:intergenic 40.0%
! TGAAGCATTCAAAGTCAAGC+AGG - chr7.4:3318427-3318446 MS.gene066566:CDS 40.0%
! TGTTGCCATGTTTTCTCCAT+TGG - chr7.4:3315053-3315072 MS.gene066566:CDS 40.0%
! TTTTTCCACAGTTGGACCAA+TGG + chr7.4:3315072-3315091 None:intergenic 40.0%
!! ACAGTGCTGAGTTGATTTCT+CGG - chr7.4:3317752-3317771 MS.gene066566:intron 40.0%
!! CTGAAATAACGGGTTCAACT+AGG - chr7.4:3315542-3315561 MS.gene066566:intron 40.0%
!! TATTGGCTGGCGAACTTTTA+AGG - chr7.4:3314526-3314545 MS.gene066566:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr7.4:3317022-3317041 None:intergenic 40.0%
!!! AGTTTTCTGGTGTTGCAATG+GGG - chr7.4:3316552-3316571 MS.gene066566:CDS 40.0%
!!! CAATAGTTTTGAGAGGTGCT+AGG - chr7.4:3316585-3316604 MS.gene066566:CDS 40.0%
!!! CTTTTTTCCTGGAGTTTTCC+TGG + chr7.4:3317659-3317678 None:intergenic 40.0%
!!! TTGCAATGGAGGCATTTTCT+CGG - chr7.4:3317683-3317702 MS.gene066566:intron 40.0%
!!! TTTTTTTTTTTTGGGGGGCG+GGG - chr7.4:3316748-3316767 MS.gene066566:intron 40.0%
AACAGACTCAGGGTTGTCAA+AGG + chr7.4:3316474-3316493 None:intergenic 45.0%
AACCCTGAGTCTGTTAAGCT+TGG - chr7.4:3316479-3316498 MS.gene066566:CDS 45.0%
AAGACTACCTTAGGCCCAAA+GGG - chr7.4:3314333-3314352 MS.gene066566:CDS 45.0%
AATTGCAGGTTTCCGAATGG+CGG - chr7.4:3314593-3314612 MS.gene066566:intron 45.0%
ACCCTGAGTCTGTTAAGCTT+GGG - chr7.4:3316480-3316499 MS.gene066566:CDS 45.0%
AGACGAAGAACCAAGTCACT+TGG + chr7.4:3318174-3318193 None:intergenic 45.0%
AGGTTGGAGACATGGTTGAA+CGG - chr7.4:3318396-3318415 MS.gene066566:CDS 45.0%
ATAGAAGACATTGGGAGGAC+CGG + chr7.4:3316953-3316972 None:intergenic 45.0%
ATGTTCTTGATGAAGCCGAG+AGG - chr7.4:3317524-3317543 MS.gene066566:intron 45.0%
ATTCTGTCTTCTCTCCTCCT+TGG + chr7.4:3318521-3318540 None:intergenic 45.0%
CAAGATGATGAAGTTGGCGA+TGG - chr7.4:3314486-3314505 MS.gene066566:intron 45.0%
CAGACCTGATGAACATTGCA+AGG - chr7.4:3314852-3314871 MS.gene066566:intron 45.0%
CAGCTGGGTTATCAATGTGA+AGG + chr7.4:3314437-3314456 None:intergenic 45.0%
CTAACTCCACCATGTTCACT+AGG + chr7.4:3318073-3318092 None:intergenic 45.0%
GACGAAGAACCAAGTCACTT+GGG + chr7.4:3318173-3318192 None:intergenic 45.0%
GAGAAGGTTGTGGACAACAA+AGG - chr7.4:3314642-3314661 MS.gene066566:intron 45.0%
GCCTTTGAGTGGTACATGTA+TGG - chr7.4:3317399-3317418 MS.gene066566:intron 45.0%
GCGGGGTGAGAAATATAAAG+TGG - chr7.4:3316765-3316784 MS.gene066566:intron 45.0%
GCTGGAATTGATGTCATCTC+TGG - chr7.4:3317808-3317827 MS.gene066566:intron 45.0%
GGAAAATAGGAAGGAGCAAG+TGG + chr7.4:3316981-3317000 None:intergenic 45.0%
TAAGACTACCTTAGGCCCAA+AGG - chr7.4:3314332-3314351 MS.gene066566:CDS 45.0%
TCAGACTGTCAATGACAGCA+GGG - chr7.4:3317576-3317595 MS.gene066566:intron 45.0%
TCGTAGTGCTTTGGTAGAGA+AGG - chr7.4:3314626-3314645 MS.gene066566:intron 45.0%
TCTCGGCTTCATCAAGAACA+TGG + chr7.4:3317525-3317544 None:intergenic 45.0%
TCTGATCACTGCATTCACTC+TGG - chr7.4:3317943-3317962 MS.gene066566:CDS 45.0%
TGCCACAAAAACAGACGTCA+AGG + chr7.4:3317498-3317517 None:intergenic 45.0%
TGCTTTGGTAGAGAAGGTTG+TGG - chr7.4:3314632-3314651 MS.gene066566:intron 45.0%
TTTCTCCATTGGTCCAACTG+TGG - chr7.4:3315064-3315083 MS.gene066566:CDS 45.0%
! AACCTACCAGAAGTACACAC+CGG + chr7.4:3318381-3318400 None:intergenic 45.0%
! ACCTCTGTTGTTGTATTGGC+TGG - chr7.4:3314513-3314532 MS.gene066566:intron 45.0%
! AGGAAATTGATGCATTGGCC+AGG - chr7.4:3317638-3317657 MS.gene066566:intron 45.0%
! AGTCTGAGATAGCACACACA+AGG + chr7.4:3317563-3317582 None:intergenic 45.0%
! CTAGTGAACATGGTGGAGTT+AGG - chr7.4:3318071-3318090 MS.gene066566:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr7.4:3317017-3317036 None:intergenic 45.0%
! GATTGACTCCCTAGTGAACA+TGG - chr7.4:3318061-3318080 MS.gene066566:intron 45.0%
! TCATAACTTGTGCTCCAAGG+AGG - chr7.4:3318504-3318523 MS.gene066566:CDS 45.0%
!! GCCTGAAATGGTAATGGCAA+AGG - chr7.4:3317618-3317637 MS.gene066566:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr7.4:3317018-3317037 None:intergenic 45.0%
!! TAGGCTTTGTTTGGAAGGGA+GGG - chr7.4:3316709-3316728 MS.gene066566:CDS 45.0%
!! TCGTGTTCGTGTTGACTCTA+TGG - chr7.4:3316232-3316251 MS.gene066566:intron 45.0%
!! TTAGGCTTTGTTTGGAAGGG+AGG - chr7.4:3316708-3316727 MS.gene066566:CDS 45.0%
!!! AGCCTTGACGTCTGTTTTTG+TGG - chr7.4:3317493-3317512 MS.gene066566:intron 45.0%
!!! TGCAATGGAGGCATTTTCTC+GGG - chr7.4:3317684-3317703 MS.gene066566:intron 45.0%
!!! GTTTTTTTTTTTTTTTTTTT+GGG - chr7.4:3316740-3316759 MS.gene066566:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+GGG - chr7.4:3316741-3316760 MS.gene066566:intron 5.0%
AAGTTGAGCTAGCAGCCTAC+AGG + chr7.4:3318320-3318339 None:intergenic 50.0%
ACTGGTTGCAAACACTGCCA+TGG - chr7.4:3316181-3316200 MS.gene066566:intron 50.0%
AGAGGAGCTCTTTGCTGATG+CGG - chr7.4:3316370-3316389 MS.gene066566:CDS 50.0%
ATCCATTCCCTTTGGGCCTA+AGG + chr7.4:3314343-3314362 None:intergenic 50.0%
CAGAATGAGGGATGTACTGC+TGG - chr7.4:3317790-3317809 MS.gene066566:intron 50.0%
CAGCAGTACATCCCTCATTC+TGG + chr7.4:3317792-3317811 None:intergenic 50.0%
CGGCTTCATCAAGAACATGG+TGG + chr7.4:3317522-3317541 None:intergenic 50.0%
CTCAGACTGTCAATGACAGC+AGG - chr7.4:3317575-3317594 MS.gene066566:intron 50.0%
CTTCACCTTGTCTGTGTCCA+TGG + chr7.4:3316201-3316220 None:intergenic 50.0%
CTTCAGTCAGTGCCTTTGAG+TGG - chr7.4:3317388-3317407 MS.gene066566:intron 50.0%
GAGTCTATCAGTGATCCTCC+AGG + chr7.4:3315851-3315870 None:intergenic 50.0%
GCCAGCCAATACAACAACAG+AGG + chr7.4:3314517-3314536 None:intergenic 50.0%
GCCCAAGCTTAACAGACTCA+GGG + chr7.4:3316484-3316503 None:intergenic 50.0%
GGCATCATGCAATGACCTCT+CGG + chr7.4:3317542-3317561 None:intergenic 50.0%
GGTGTGTACTTCTGGTAGGT+TGG - chr7.4:3318380-3318399 MS.gene066566:CDS 50.0%
GGTTGGAGACATGGTTGAAC+GGG - chr7.4:3318397-3318416 MS.gene066566:CDS 50.0%
GTGGACAACAAAGGAGATGC+TGG - chr7.4:3314651-3314670 MS.gene066566:intron 50.0%
GTTGGAGACATGGTTGAACG+GGG - chr7.4:3318398-3318417 MS.gene066566:CDS 50.0%
TACCTTAGGCCCAAAGGGAA+TGG - chr7.4:3314338-3314357 MS.gene066566:CDS 50.0%
TGACTCCCTAGTGAACATGG+TGG - chr7.4:3318064-3318083 MS.gene066566:intron 50.0%
TGAGATTGAAGGAGCCGAGA+AGG - chr7.4:3316265-3316284 MS.gene066566:CDS 50.0%
TGAGTGTGCTCGTAGTGCTT+TGG - chr7.4:3314617-3314636 MS.gene066566:intron 50.0%
TGCCCAAGCTTAACAGACTC+AGG + chr7.4:3316485-3316504 None:intergenic 50.0%
TGTAGGCTGCTAGCTCAACT+TGG - chr7.4:3318319-3318338 MS.gene066566:CDS 50.0%
TTGGAGACATGGTTGAACGG+GGG - chr7.4:3318399-3318418 MS.gene066566:CDS 50.0%
TTGGGTTCCCCCTAATGAGA+GGG - chr7.4:3316884-3316903 MS.gene066566:intron 50.0%
! CTTCTGGTAGGTTGGAGACA+TGG - chr7.4:3318388-3318407 MS.gene066566:CDS 50.0%
! GATGGAGTACCCAAGTGACT+TGG - chr7.4:3318161-3318180 MS.gene066566:intron 50.0%
! TGGTATTGAGCGTTTGGCTC+TGG - chr7.4:3316424-3316443 MS.gene066566:CDS 50.0%
! TTTGGGTTCCCCCTAATGAG+AGG - chr7.4:3316883-3316902 MS.gene066566:intron 50.0%
!! AATGACAGCAGGGTGTTGCT+TGG - chr7.4:3317586-3317605 MS.gene066566:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr7.4:3317019-3317038 None:intergenic 50.0%
CACTGCCATGGACACAGACA+AGG - chr7.4:3316193-3316212 MS.gene066566:intron 55.0%
CGACGAGGACTTTAGCAGCT+GGG + chr7.4:3314452-3314471 None:intergenic 55.0%
CGGGTGGCCTGAAATGGTAA+TGG - chr7.4:3317612-3317631 MS.gene066566:intron 55.0%
CTTCGACCGGTGTGTACTTC+TGG - chr7.4:3318372-3318391 MS.gene066566:CDS 55.0%
GACCGGTGTGTACTTCTGGT+AGG - chr7.4:3318376-3318395 MS.gene066566:CDS 55.0%
GAGGAGCTCTTTGCTGATGC+GGG - chr7.4:3316371-3316390 MS.gene066566:CDS 55.0%
GCATCAGCAAAGAGCTCCTC+TGG + chr7.4:3316371-3316390 None:intergenic 55.0%
TCGACGAGGACTTTAGCAGC+TGG + chr7.4:3314453-3314472 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+AGG + chr7.4:3317012-3317031 None:intergenic 55.0%
! GCATTGGCCAGGAAAACTCC+AGG - chr7.4:3317649-3317668 MS.gene066566:intron 55.0%
! GGCATTTTCTCGGGCTCTCT+TGG - chr7.4:3317693-3317712 MS.gene066566:intron 55.0%
!! CGTTTGGCTCTGGTAACTGG+TGG - chr7.4:3316434-3316453 MS.gene066566:CDS 55.0%
!! GAGCGTTTGGCTCTGGTAAC+TGG - chr7.4:3316431-3316450 MS.gene066566:CDS 55.0%
!! TTCTGGTGTTGCAATGGGGC+AGG - chr7.4:3316556-3316575 MS.gene066566:CDS 55.0%
ACCCCCAAAGTCCTCTCCTC+CGG - chr7.4:3316931-3316950 MS.gene066566:intron 60.0%
ACCGGAGGAGAGGACTTTGG+GGG + chr7.4:3316935-3316954 None:intergenic 60.0%
AGGACCGGAGGAGAGGACTT+TGG + chr7.4:3316938-3316957 None:intergenic 60.0%
CCTCATTCTGGTGCTCAGCG+CGG + chr7.4:3317780-3317799 None:intergenic 60.0%
CGCGCTGAGCACCAGAATGA+GGG - chr7.4:3317778-3317797 MS.gene066566:intron 60.0%
GAAGACATTGGGAGGACCGG+AGG + chr7.4:3316950-3316969 None:intergenic 60.0%
GACCGGAGGAGAGGACTTTG+GGG + chr7.4:3316936-3316955 None:intergenic 60.0%
GAGCACACTCAGCCGCCATT+CGG + chr7.4:3314608-3314627 None:intergenic 60.0%
GGACCGGAGGAGAGGACTTT+GGG + chr7.4:3316937-3316956 None:intergenic 60.0%
GGAGTTTGGAGGGGAGAGGA+GGG + chr7.4:3317008-3317027 None:intergenic 60.0%
TAGCGGCCTAGCCATGCATC+AGG - chr7.4:3315698-3315717 MS.gene066566:intron 60.0%
TGGAGGGGAGAGGAGGGTTT+AGG + chr7.4:3317002-3317021 None:intergenic 60.0%
TTTGGAAGGGAGGGCAAGCG+AGG - chr7.4:3316718-3316737 MS.gene066566:intron 60.0%
!! AGCAGGGTGTTGCTTGGAGG+CGG - chr7.4:3317592-3317611 MS.gene066566:intron 60.0%
!! GACAGCAGGGTGTTGCTTGG+AGG - chr7.4:3317589-3317608 MS.gene066566:intron 60.0%
CATTGGGAGGACCGGAGGAG+AGG + chr7.4:3316945-3316964 None:intergenic 65.0%
CCGCGCTGAGCACCAGAATG+AGG - chr7.4:3317777-3317796 MS.gene066566:intron 65.0%
GGGAGTTTGGAGGGGAGAGG+AGG + chr7.4:3317009-3317028 None:intergenic 65.0%
TGGAGGCGGGTGGCCTGAAA+TGG - chr7.4:3317606-3317625 MS.gene066566:intron 65.0%
!! GCAGGGTGTTGCTTGGAGGC+GGG - chr7.4:3317593-3317612 MS.gene066566:intron 65.0%
!! GGGTGTTGCTTGGAGGCGGG+TGG - chr7.4:3317596-3317615 MS.gene066566:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 3314312 3318544 3314312 ID=MS.gene066566
chr7.4 mRNA 3314312 3318544 3314312 ID=MS.gene066566.t1;Parent=MS.gene066566
chr7.4 exon 3318184 3318544 3318184 ID=MS.gene066566.t1.exon1;Parent=MS.gene066566.t1
chr7.4 CDS 3318184 3318544 3318184 ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4 exon 3317901 3318016 3317901 ID=MS.gene066566.t1.exon2;Parent=MS.gene066566.t1
chr7.4 CDS 3317901 3318016 3317901 ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4 exon 3316971 3317047 3316971 ID=MS.gene066566.t1.exon3;Parent=MS.gene066566.t1
chr7.4 CDS 3316971 3317047 3316971 ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4 exon 3316250 3316735 3316250 ID=MS.gene066566.t1.exon4;Parent=MS.gene066566.t1
chr7.4 CDS 3316250 3316735 3316250 ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4 exon 3315022 3315337 3315022 ID=MS.gene066566.t1.exon5;Parent=MS.gene066566.t1
chr7.4 CDS 3315022 3315337 3315022 ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
chr7.4 exon 3314312 3314458 3314312 ID=MS.gene066566.t1.exon6;Parent=MS.gene066566.t1
chr7.4 CDS 3314312 3314458 3314312 ID=cds.MS.gene066566.t1;Parent=MS.gene066566.t1
Gene Sequence

>MS.gene066566

ATGGCTATTGCTGACTTGGTTAAGACTACCTTAGGCCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGCCGTGAAGTTACTGTCACTAATGACGGTGCTACAATCTTGAAGTCCCTTCACATTGATAACCCAGCTGCTAAAGTCCTCGTCGACATTTCTAAAGTTCAAGATGATGAAGTTGGCGATGGAACTACCTCTGTTGTTGTATTGGCTGGCGAACTTTTAAGGGAAGCAGAAAAGCTCGTTGCAGCTAAAATTCATCCCATGACTATAATTGCAGGTTTCCGAATGGCGGCTGAGTGTGCTCGTAGTGCTTTGGTAGAGAAGGTTGTGGACAACAAAGGAGATGCTGGTATGCTTACTTTCCTTTTTGCATGTTTCCTTTTGGATTAGGTTTTACCATTGGCTCTGAATACTTTGTTATCATTAGAATTGTTATTATCATTTTGTTTACAGCATGGTTAGATATTAAAGCATTCTTTTGTCGTATCTTATGCATGAACTTACTTGGTTTTGCAGAGAAATTCAGGTCAGACCTGATGAACATTGCAAGGACTACTTTGAGCTCCAAAATTCTCTCACAAGACAAGGAGCATTTTGCTAAATTAGCTGTAGATGCTGTAATGAGATTAAAGGTGAACAGTCACTACCCTACTAATACAGAGTTCCATTTTTGGGGATTTAGCTAATAGTGCATGCATTGTTGCCATGATTTCTCCATAGTGTATGCATTGTTGCCATGTTTTCTCCATTGGTCCAACTGTGGAAAAACTATTGGCTTATTTTTGAGCTTATGCAAATAAATAAGATCTTATGTATTATTTATCCATAAGCTTGTCGAGGTAGTTTATGAAAAAACAGCACATGAAGATACAGTTTTTCGTTAGTGAGAACTTATGAATTAACATAAAAGCTTATTTATTTTCATAAGATATTCTTCATAAGCTATAAAATAAGTCGATCCAAACAGGCCCAAAAATTAGTTACAAATTTGATCTATATACTTTTCTGCATGCTTTGGCTAGTAAATACTTTAAATTTTATTTTATTTAGAAGTTTGGTTACAATGTTTTATATGATCCTGTAGTTTATAATCCATTCTTATGATGTGAGTATAACCTTTCAATTTCTTTCCAATCCTTAAAAAACAGTTTTTTGAGTTTTCTAATATAATTTCATGATAGCTTGTTCGAGCCTTGAATGCTCCATAAAAAGTATTCACTGAAATAACGGGTTCAACTAGGTTATATTTTTGGCAGGTTATAGCAGTATTTCATTTGTGGGGATGGTTTTTCCTTTTCTCCCTAATGGTTTAAAAGTACACAATGTTCTGGTTTTCATTCTATACAGTTTATTCATTTTTTTGTACTTCTGTGCTAGCGGCCTAGCCATGCATCAGGATTTTTTTTTCTTTCCCATAGTGATCTCTATTATTATGAAATTAACTATATGCATTTTCACATTTTAATTTCCTTTTTTAAATTACAGGGAAGCACAAATTTAGAATCTGTCCAGATTATAAAGAAGCCTGGAGGATCACTGATAGACTCATTTTTAGATGAAGGGTAATATCGCTGAGTAGTTCCACATTTTTTAGTTTGAGTATCAAATGATTCTATTCTATCTTTTTTTAAATCCTGGGGTTTTTCTTTTGTATTGAGTTGCATAGGTAGCCTTCAAGTAACTTGAATAAACTCAAATGATCTCCAACTTCACCACTACCTGTATAATGAACTATTTACATTAGTCTTGGTAAAAAATAATATCTCTGTTTCTAAATTGGATTATACTTTGGTTTAGATTTATTCTTGACAAGAAAATTGGTCTCGGACAACCCAAACGCATAGAGAATGCAAAGATACTGGTTGCAAACACTGCCATGGACACAGACAAGGTGAAGATATACGGAGCTCGTGTTCGTGTTGACTCTATGGCTAAAGTTGCTGAGATTGAAGGAGCCGAGAAGGAGAAAATGAAAGAAAAGGTGAACAAGATCATAGGTCATGGCATCAACTGTTTTGTTAACAGACAATTGATCTACAATTTTCCAGAGGAGCTCTTTGCTGATGCGGGAATACTTGCTATTGAACATGCTGATTTTGATGGTATTGAGCGTTTGGCTCTGGTAACTGGTGGTGAAATCGCGTCAACCTTTGACAACCCTGAGTCTGTTAAGCTTGGGCAGTGTGAACTTATTGAAGAGATTATGATTGGTGAGGATAAATTGATTAAGTTTTCTGGTGTTGCAATGGGGCAGGCATGTACAATAGTTTTGAGAGGTGCTAGGTACTTTTTCTTCTTTTGTTATTTTAAATTCCTTTCTGACGTTCTTTTACATATTCAGGGATTATAATCTTGATACCATATAACTTCAGATCATTTTTCTTTTAGGCTTTGTTTGGAAGGGAGGGCAAGCGAGGTTTTTTTTTTTTTTTTTTTGGGGGGCGGGGTGAGAAATATAAAGTGGATAAATCTTTCACAATTTTTTGAAAGAGCAATTTTTAGATTGAATTTAAAAAATCCAACACACAGGAAAAAAAAAAAAAATCCTCCAATACAATTTTTGGGTTCCCCCTAATGAGAGGGATTTTGTATTATGAATTAAAATTAACCCCCAAAGTCCTCTCCTCCGGTCCTCCCAATGTCTTCTATTTTTTCCACTTGCTCCTTCCTATTTTCCTAAACCCTCCTCTCCCCTCCAAACTCCCAAACAAAGCCTAAGGTTTTCTTATTCTAGCAGTATTTGTTTGTAATATTTCACTATTTATTCATGATATTAGTATTTCATAGGAATTGCTTAATACAAATGACCCTTTTATTCAGTTTCAGTTCTGGTTTATTAAAGGTTAATGTATAGGATTCTAATTTTTATTTGTTTGTTTAAAATATTTTATATTTAATAAATTGCAGCTAATAATTATTAAGTCCAATGATTTAACTGGACTGCTGAAATGTTGGATTTTTTTTTTTTTTGACAAATGCTGGAATGTTGGACATTAATTGCTTTCATGCAAACTTAGTTTATGCCCTTATATTTATGTTGCCCCGCTCCTTACCATTTATTATGCTTCAGTCAGTGCCTTTGAGTGGTACATGTATGGACTTCCTTGTATGTATCAGTAGACAGCTGTTTTTTAACAAATTTGATGGGCAGTTTTTTAGTTGCACTTTCAGCCTTGACGTCTGTTTTTGTGGCAGCCACCATGTTCTTGATGAAGCCGAGAGGTCATTGCATGATGCCTTGTGTGTGCTATCTCAGACTGTCAATGACAGCAGGGTGTTGCTTGGAGGCGGGTGGCCTGAAATGGTAATGGCAAAGGAAATTGATGCATTGGCCAGGAAAACTCCAGGAAAAAAGTCTCTTGCAATGGAGGCATTTTCTCGGGCTCTCTTGGCTATACCAACAACCATTGCTGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCGGCTCCGCGCTGAGCACCAGAATGAGGGATGTACTGCTGGAATTGATGTCATCTCTGGTTCTGTAAGTACACAACAGATAATTGCGTGGATTTATTTGAGTGTGCATAATTTTGAAACGCTGCATCTTAATATATCATTCCATAATCTTTTTCTTGGTAGAAGTTCTGTTTCTGATCACTGCATTCACTCTGGTCATATCTTAGTAACTTCAGCATATAACATGAAATGTTTAATTAAAATTTGCAACATAAGTTTGTATTTTGTTTCATGGTGTCATTTCTAAATTAGATTGACTCCCTAGTGAACATGGTGGAGTTAGGATGTGTATGATAGGGACTTTGGTATCATGCGGAGCCTAAGTCCCGCATTGAATAATATGAGATGCTTGATGGAGTACCCAAGTGACTTGGTTCTTCGTCTTCTCTCATGACAACCAGATTTTAAGGAGTGCTTGAGTGTGTATCAGTGTGCAATTTATTAACTGAGTAATGAGTACATGTAACAGTGATTTTATTAAGTTCATGTTGTATTTTAAAAACGTATCCTGTAGGCTGCTAGCTCAACTTGGTTCCATTACATTTTCTGTTTGTCTTATATACTTCGACCGGTGTGTACTTCTGGTAGGTTGGAGACATGGTTGAACGGGGGATTTGTGAAGCATTCAAAGTCAAGCAGGCTGTATTGCTATCTGCAACAGAGGCAGCTGAGATGATCCTTAGAGTTGATGATATCATAACTTGTGCTCCAAGGAGGAGAGAAGACAGAATGTAA

Protein sequence

>MS.gene066566.t1

MAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIAGFRMAAECARSALVEKVVDNKGDAEKFRSDLMNIARTTLSSKILSQDKEHFAKLAVDAVMRLKGSTNLESVQIIKKPGGSLIDSFLDEGFILDKKIGLGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMKEKVNKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGQCELIEEIMIGEDKLIKFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEIDALARKTPGKKSLAMEAFSRALLAIPTTIADNAGLDSAELISRLRAEHQNEGCTAGIDVISGSVGDMVERGICEAFKVKQAVLLSATEAAEMILRVDDIITCAPRRREDRM