Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015187.t1 | XP_003611678.1 | 99.4 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 1.30E-91 | 345.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015187.t1 | Q42551 | 88.0 | 158 | 19 | 0 | 2 | 159 | 3 | 160 | 5.9e-85 | 314.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015187.t1 | G7K599 | 99.4 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 9.4e-92 | 345.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene015187 | MS.gene08926 | PPI |
MS.gene015187 | MS.gene58463 | PPI |
MS.gene015187 | MS.gene99949 | PPI |
MS.gene015187 | MS.gene073110 | PPI |
MS.gene015187 | MS.gene014659 | PPI |
MS.gene015187 | MS.gene35346 | PPI |
MS.gene015187 | MS.gene08774 | PPI |
MS.gene015187 | MS.gene90381 | PPI |
MS.gene015187 | MS.gene94636 | PPI |
MS.gene015187 | MS.gene049883 | PPI |
MS.gene015187 | MS.gene58462 | PPI |
MS.gene015187 | MS.gene83520 | PPI |
MS.gene033148 | MS.gene015187 | PPI |
MS.gene015187 | MS.gene91501 | PPI |
MS.gene015187 | MS.gene023529 | PPI |
MS.gene015187 | MS.gene67704 | PPI |
MS.gene015187 | MS.gene75306 | PPI |
MS.gene015187 | MS.gene40316 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015187.t1 | MTR_5g016630 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 4.75e-119 | 332 |
MS.gene015187.t1 | MTR_4g094872 | 89.937 | 159 | 16 | 0 | 1 | 159 | 1 | 159 | 1.69e-110 | 311 |
MS.gene015187.t1 | MTR_8g468530 | 41.558 | 154 | 83 | 2 | 1 | 154 | 17 | 163 | 6.70e-38 | 127 |
MS.gene015187.t1 | MTR_4g108080 | 41.558 | 154 | 83 | 2 | 1 | 154 | 1 | 147 | 1.75e-37 | 126 |
MS.gene015187.t1 | MTR_4g108080 | 46.154 | 104 | 54 | 1 | 51 | 154 | 46 | 147 | 1.78e-29 | 105 |
MS.gene015187.t1 | MTR_1g021150 | 34.868 | 152 | 92 | 2 | 4 | 155 | 1 | 145 | 1.96e-27 | 100 |
MS.gene015187.t1 | MTR_3g062450 | 33.553 | 152 | 94 | 2 | 4 | 155 | 1 | 145 | 4.96e-27 | 99.4 |
MS.gene015187.t1 | MTR_5g075580 | 33.553 | 152 | 94 | 2 | 4 | 155 | 1 | 145 | 5.24e-27 | 99.4 |
MS.gene015187.t1 | MTR_7g116940 | 33.553 | 152 | 94 | 2 | 4 | 155 | 1 | 145 | 1.76e-26 | 97.8 |
MS.gene015187.t1 | MTR_8g071040 | 32.895 | 152 | 95 | 2 | 4 | 155 | 1 | 145 | 2.21e-26 | 97.8 |
MS.gene015187.t1 | MTR_4g108080 | 41.880 | 117 | 61 | 2 | 1 | 117 | 1 | 110 | 6.83e-26 | 95.5 |
MS.gene015187.t1 | MTR_4g073240 | 32.895 | 152 | 95 | 2 | 4 | 155 | 1 | 145 | 1.19e-25 | 95.9 |
MS.gene015187.t1 | MTR_1g021150 | 37.815 | 119 | 72 | 1 | 37 | 155 | 37 | 153 | 4.32e-25 | 94.7 |
MS.gene015187.t1 | MTR_5g075580 | 36.441 | 118 | 73 | 1 | 38 | 155 | 1 | 116 | 8.86e-25 | 92.8 |
MS.gene015187.t1 | MTR_7g116940 | 32.704 | 159 | 93 | 3 | 4 | 155 | 1 | 152 | 3.19e-24 | 92.4 |
MS.gene015187.t1 | MTR_4g073240 | 36.441 | 118 | 73 | 1 | 38 | 155 | 1 | 116 | 7.39e-24 | 90.5 |
MS.gene015187.t1 | MTR_4g076200 | 35.616 | 146 | 86 | 3 | 8 | 153 | 36 | 173 | 2.68e-21 | 85.5 |
MS.gene015187.t1 | MTR_5g009020 | 34.932 | 146 | 87 | 3 | 8 | 153 | 36 | 173 | 3.88e-21 | 85.1 |
MS.gene015187.t1 | MTR_4g063490 | 32.432 | 148 | 85 | 3 | 18 | 154 | 18 | 161 | 4.71e-21 | 84.3 |
MS.gene015187.t1 | MTR_2g096690 | 34.109 | 129 | 74 | 2 | 37 | 154 | 33 | 161 | 6.63e-21 | 84.0 |
MS.gene015187.t1 | MTR_4g076200 | 36.641 | 131 | 75 | 3 | 23 | 153 | 10 | 132 | 1.73e-20 | 82.4 |
MS.gene015187.t1 | MTR_8g085690 | 36.111 | 108 | 67 | 1 | 37 | 144 | 50 | 155 | 6.63e-20 | 81.6 |
MS.gene015187.t1 | MTR_1g095510 | 38.261 | 115 | 68 | 2 | 37 | 151 | 16 | 127 | 8.31e-20 | 80.5 |
MS.gene015187.t1 | MTR_1g095510 | 38.261 | 115 | 68 | 2 | 37 | 151 | 70 | 181 | 1.11e-19 | 81.6 |
MS.gene015187.t1 | MTR_2g096690 | 34.109 | 129 | 73 | 3 | 37 | 154 | 33 | 160 | 1.34e-19 | 80.5 |
MS.gene015187.t1 | MTR_3g098780 | 31.852 | 135 | 85 | 4 | 7 | 140 | 5 | 133 | 3.09e-18 | 77.8 |
MS.gene015187.t1 | MTR_2g078010 | 32.231 | 121 | 75 | 2 | 8 | 128 | 9 | 122 | 4.79e-18 | 76.3 |
MS.gene015187.t1 | MTR_2g078010 | 28.667 | 150 | 100 | 2 | 8 | 157 | 9 | 151 | 5.27e-18 | 76.3 |
MS.gene015187.t1 | MTR_3g098780 | 31.852 | 135 | 85 | 4 | 7 | 140 | 29 | 157 | 5.87e-18 | 77.4 |
MS.gene015187.t1 | MTR_7g116940 | 33.621 | 116 | 70 | 2 | 4 | 119 | 1 | 109 | 2.09e-17 | 73.9 |
MS.gene015187.t1 | MTR_7g087590 | 30.986 | 142 | 91 | 3 | 8 | 149 | 14 | 148 | 1.57e-16 | 74.7 |
MS.gene015187.t1 | MTR_3g110110 | 31.618 | 136 | 83 | 5 | 5 | 137 | 4 | 132 | 2.27e-15 | 69.3 |
MS.gene015187.t1 | MTR_1g095510 | 41.176 | 85 | 48 | 1 | 37 | 121 | 70 | 152 | 2.80e-15 | 69.7 |
MS.gene015187.t1 | MTR_2g078010 | 32.353 | 102 | 67 | 1 | 56 | 157 | 66 | 165 | 1.13e-14 | 67.8 |
MS.gene015187.t1 | MTR_4g073240 | 36.709 | 79 | 48 | 1 | 77 | 155 | 7 | 83 | 5.36e-14 | 63.9 |
MS.gene015187.t1 | MTR_2g096690 | 45.161 | 62 | 34 | 0 | 37 | 98 | 33 | 94 | 1.76e-13 | 63.5 |
MS.gene015187.t1 | MTR_8g028920 | 30.000 | 120 | 80 | 3 | 38 | 155 | 29 | 146 | 2.96e-13 | 64.3 |
MS.gene015187.t1 | MTR_5g021260 | 35.398 | 113 | 64 | 3 | 1 | 112 | 12 | 116 | 5.60e-13 | 63.2 |
MS.gene015187.t1 | MTR_8g028920 | 33.333 | 105 | 66 | 3 | 53 | 155 | 5 | 107 | 6.28e-13 | 62.8 |
MS.gene015187.t1 | MTR_8g076490 | 34.513 | 113 | 65 | 3 | 1 | 112 | 12 | 116 | 7.43e-13 | 62.8 |
MS.gene015187.t1 | MTR_2g078010 | 28.037 | 107 | 70 | 2 | 8 | 114 | 9 | 108 | 6.58e-12 | 59.3 |
MS.gene015187.t1 | MTR_5g019480 | 27.966 | 118 | 82 | 2 | 33 | 150 | 5 | 119 | 7.59e-12 | 59.7 |
MS.gene015187.t1 | MTR_5g019480 | 27.966 | 118 | 82 | 2 | 33 | 150 | 56 | 170 | 1.05e-11 | 60.5 |
MS.gene015187.t1 | MTR_5g019480 | 27.966 | 118 | 82 | 2 | 33 | 150 | 53 | 167 | 1.16e-11 | 60.1 |
MS.gene015187.t1 | MTR_8g098595 | 29.730 | 111 | 74 | 3 | 47 | 155 | 23 | 131 | 2.76e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015187.t1 | AT3G57870 | 87.975 | 158 | 19 | 0 | 2 | 159 | 3 | 160 | 9.56e-107 | 301 |
MS.gene015187.t1 | AT2G02760 | 41.558 | 154 | 83 | 2 | 1 | 154 | 1 | 147 | 1.37e-37 | 126 |
MS.gene015187.t1 | AT2G02760 | 41.558 | 154 | 83 | 2 | 1 | 154 | 1 | 147 | 1.37e-37 | 126 |
MS.gene015187.t1 | AT2G02760 | 41.558 | 154 | 83 | 2 | 1 | 154 | 1 | 147 | 1.37e-37 | 126 |
MS.gene015187.t1 | AT2G02760 | 41.558 | 154 | 83 | 2 | 1 | 154 | 1 | 147 | 1.37e-37 | 126 |
MS.gene015187.t1 | AT1G14400 | 40.909 | 154 | 84 | 2 | 1 | 154 | 1 | 147 | 9.49e-37 | 124 |
MS.gene015187.t1 | AT1G14400 | 40.909 | 154 | 84 | 2 | 1 | 154 | 1 | 147 | 9.49e-37 | 124 |
MS.gene015187.t1 | AT5G62540 | 40.260 | 154 | 85 | 2 | 1 | 154 | 1 | 147 | 1.12e-34 | 119 |
MS.gene015187.t1 | AT1G64230 | 33.974 | 156 | 97 | 2 | 4 | 155 | 1 | 154 | 1.44e-27 | 100 |
MS.gene015187.t1 | AT1G64230 | 34.211 | 152 | 93 | 2 | 4 | 155 | 1 | 145 | 1.74e-27 | 100 |
MS.gene015187.t1 | AT1G64230 | 34.211 | 152 | 93 | 2 | 4 | 155 | 1 | 145 | 1.74e-27 | 100 |
MS.gene015187.t1 | AT5G41700 | 34.211 | 152 | 93 | 2 | 4 | 155 | 1 | 145 | 1.86e-27 | 100 |
MS.gene015187.t1 | AT5G41700 | 34.211 | 152 | 93 | 2 | 4 | 155 | 1 | 145 | 1.86e-27 | 100 |
MS.gene015187.t1 | AT5G41700 | 34.211 | 152 | 93 | 2 | 4 | 155 | 1 | 145 | 1.86e-27 | 100 |
MS.gene015187.t1 | AT4G27960 | 33.553 | 152 | 94 | 2 | 4 | 155 | 1 | 145 | 6.67e-27 | 99.0 |
MS.gene015187.t1 | AT5G56150 | 33.553 | 152 | 94 | 2 | 4 | 155 | 1 | 145 | 7.11e-27 | 99.0 |
MS.gene015187.t1 | AT5G53300 | 33.553 | 152 | 94 | 2 | 4 | 155 | 1 | 145 | 1.04e-26 | 98.6 |
MS.gene015187.t1 | AT5G53300 | 33.553 | 152 | 94 | 2 | 4 | 155 | 1 | 145 | 1.04e-26 | 98.6 |
MS.gene015187.t1 | AT5G53300 | 33.553 | 152 | 94 | 2 | 4 | 155 | 1 | 145 | 1.04e-26 | 98.6 |
MS.gene015187.t1 | AT4G27960 | 33.553 | 152 | 94 | 2 | 4 | 155 | 31 | 175 | 2.05e-26 | 98.6 |
MS.gene015187.t1 | AT5G41700 | 33.987 | 153 | 93 | 3 | 4 | 155 | 1 | 146 | 2.45e-26 | 97.8 |
MS.gene015187.t1 | AT3G08690 | 32.237 | 152 | 96 | 2 | 4 | 155 | 1 | 145 | 1.39e-25 | 95.5 |
MS.gene015187.t1 | AT3G08690 | 32.237 | 152 | 96 | 2 | 4 | 155 | 1 | 145 | 1.39e-25 | 95.5 |
MS.gene015187.t1 | AT3G08700 | 32.895 | 152 | 96 | 2 | 4 | 155 | 1 | 146 | 2.02e-25 | 95.1 |
MS.gene015187.t1 | AT3G08700 | 32.895 | 152 | 96 | 2 | 4 | 155 | 1 | 146 | 2.02e-25 | 95.1 |
MS.gene015187.t1 | AT1G64230 | 36.975 | 119 | 73 | 1 | 37 | 155 | 71 | 187 | 1.19e-24 | 94.4 |
MS.gene015187.t1 | AT1G64230 | 36.975 | 119 | 73 | 1 | 37 | 155 | 71 | 187 | 1.19e-24 | 94.4 |
MS.gene015187.t1 | AT2G16740 | 31.579 | 152 | 97 | 2 | 4 | 155 | 1 | 145 | 3.21e-24 | 92.0 |
MS.gene015187.t1 | AT1G50490 | 41.026 | 117 | 66 | 2 | 37 | 153 | 63 | 176 | 7.01e-23 | 89.7 |
MS.gene015187.t1 | AT3G20060 | 38.168 | 131 | 73 | 3 | 23 | 153 | 10 | 132 | 2.11e-22 | 87.0 |
MS.gene015187.t1 | AT3G20060 | 36.301 | 146 | 85 | 3 | 8 | 153 | 40 | 177 | 2.76e-22 | 88.2 |
MS.gene015187.t1 | AT3G46460 | 32.558 | 129 | 76 | 1 | 37 | 154 | 33 | 161 | 5.92e-21 | 84.3 |
MS.gene015187.t1 | AT1G36340 | 37.719 | 114 | 69 | 1 | 37 | 150 | 35 | 146 | 8.27e-21 | 83.6 |
MS.gene015187.t1 | AT1G36340 | 37.719 | 114 | 69 | 1 | 37 | 150 | 35 | 146 | 8.27e-21 | 83.6 |
MS.gene015187.t1 | AT3G55380 | 32.558 | 129 | 76 | 1 | 37 | 154 | 34 | 162 | 3.58e-20 | 82.4 |
MS.gene015187.t1 | AT5G59300 | 31.783 | 129 | 77 | 1 | 37 | 154 | 33 | 161 | 4.01e-20 | 82.0 |
MS.gene015187.t1 | AT5G50870 | 33.333 | 147 | 82 | 5 | 4 | 141 | 2 | 141 | 3.36e-19 | 80.5 |
MS.gene015187.t1 | AT5G50870 | 36.220 | 127 | 72 | 4 | 4 | 128 | 2 | 121 | 1.03e-18 | 79.3 |
MS.gene015187.t1 | AT3G13550 | 32.773 | 119 | 78 | 1 | 37 | 155 | 64 | 180 | 3.10e-18 | 77.4 |
MS.gene015187.t1 | AT1G16890 | 31.405 | 121 | 81 | 1 | 37 | 157 | 33 | 151 | 6.41e-18 | 75.9 |
MS.gene015187.t1 | AT3G46460 | 33.036 | 112 | 64 | 1 | 54 | 154 | 8 | 119 | 6.90e-18 | 75.1 |
MS.gene015187.t1 | AT3G46460 | 33.036 | 112 | 64 | 1 | 54 | 154 | 8 | 119 | 6.90e-18 | 75.1 |
MS.gene015187.t1 | AT1G16890 | 31.405 | 121 | 81 | 1 | 37 | 157 | 42 | 160 | 8.55e-18 | 75.9 |
MS.gene015187.t1 | AT5G25760 | 34.559 | 136 | 79 | 5 | 5 | 137 | 4 | 132 | 8.78e-18 | 75.9 |
MS.gene015187.t1 | AT5G25760 | 34.559 | 136 | 79 | 5 | 5 | 137 | 4 | 132 | 8.78e-18 | 75.9 |
MS.gene015187.t1 | AT1G78870 | 32.231 | 121 | 75 | 2 | 8 | 128 | 9 | 122 | 9.30e-18 | 75.5 |
MS.gene015187.t1 | AT1G16890 | 31.624 | 117 | 78 | 1 | 41 | 157 | 4 | 118 | 1.79e-17 | 73.9 |
MS.gene015187.t1 | AT5G41700 | 34.211 | 114 | 68 | 2 | 4 | 117 | 1 | 107 | 2.11e-17 | 74.3 |
MS.gene015187.t1 | AT1G78870 | 31.624 | 117 | 78 | 1 | 41 | 157 | 4 | 118 | 3.19e-17 | 73.2 |
MS.gene015187.t1 | AT5G53300 | 33.945 | 109 | 65 | 2 | 4 | 112 | 1 | 102 | 1.33e-16 | 71.2 |
MS.gene015187.t1 | AT5G56150 | 32.727 | 110 | 67 | 2 | 4 | 113 | 1 | 103 | 1.61e-16 | 71.2 |
MS.gene015187.t1 | AT5G05080 | 29.577 | 142 | 93 | 3 | 8 | 149 | 14 | 148 | 4.95e-16 | 73.2 |
MS.gene015187.t1 | AT5G05080 | 29.577 | 142 | 93 | 3 | 8 | 149 | 14 | 148 | 4.95e-16 | 73.2 |
MS.gene015187.t1 | AT5G05080 | 29.577 | 142 | 93 | 3 | 8 | 149 | 14 | 148 | 4.95e-16 | 73.2 |
MS.gene015187.t1 | AT5G05080 | 29.577 | 142 | 93 | 3 | 8 | 149 | 14 | 148 | 4.95e-16 | 73.2 |
MS.gene015187.t1 | AT3G13550 | 38.202 | 89 | 53 | 1 | 37 | 125 | 64 | 150 | 1.14e-15 | 70.5 |
MS.gene015187.t1 | AT1G78870 | 37.079 | 89 | 53 | 2 | 41 | 128 | 4 | 90 | 1.66e-15 | 68.9 |
MS.gene015187.t1 | AT2G46030 | 29.752 | 121 | 81 | 3 | 37 | 155 | 28 | 146 | 8.13e-14 | 65.9 |
MS.gene015187.t1 | AT2G46030 | 29.752 | 121 | 81 | 3 | 37 | 155 | 28 | 146 | 8.13e-14 | 65.9 |
MS.gene015187.t1 | AT2G46030 | 29.752 | 121 | 81 | 3 | 37 | 155 | 31 | 149 | 8.21e-14 | 65.9 |
MS.gene015187.t1 | AT2G46030 | 29.752 | 121 | 81 | 3 | 37 | 155 | 31 | 149 | 8.21e-14 | 65.9 |
MS.gene015187.t1 | AT2G46030 | 29.752 | 121 | 81 | 3 | 37 | 155 | 100 | 218 | 1.23e-13 | 66.6 |
MS.gene015187.t1 | AT1G75440 | 36.283 | 113 | 63 | 3 | 1 | 112 | 12 | 116 | 2.05e-13 | 64.3 |
MS.gene015187.t1 | AT3G55380 | 25.153 | 163 | 77 | 1 | 37 | 154 | 34 | 196 | 2.24e-13 | 65.1 |
MS.gene015187.t1 | AT5G42990 | 34.513 | 113 | 65 | 3 | 1 | 112 | 12 | 116 | 2.78e-13 | 63.9 |
MS.gene015187.t1 | AT1G63800 | 30.000 | 120 | 80 | 3 | 38 | 155 | 14 | 131 | 4.24e-13 | 63.9 |
MS.gene015187.t1 | AT1G63800 | 30.000 | 120 | 80 | 3 | 38 | 155 | 29 | 146 | 4.70e-13 | 63.9 |
MS.gene015187.t1 | AT5G41340 | 30.534 | 131 | 84 | 4 | 27 | 155 | 21 | 146 | 5.12e-13 | 63.9 |
MS.gene015187.t1 | AT1G45050 | 35.398 | 113 | 64 | 3 | 1 | 112 | 12 | 116 | 6.51e-13 | 63.2 |
MS.gene015187.t1 | AT4G36800 | 34.375 | 96 | 60 | 2 | 33 | 128 | 54 | 146 | 8.73e-13 | 63.2 |
MS.gene015187.t1 | AT4G36800 | 34.375 | 96 | 60 | 2 | 33 | 128 | 54 | 146 | 8.73e-13 | 63.2 |
MS.gene015187.t1 | AT3G24515 | 27.586 | 116 | 82 | 1 | 45 | 158 | 76 | 191 | 9.67e-13 | 65.1 |
MS.gene015187.t1 | AT3G24515 | 27.586 | 116 | 82 | 1 | 45 | 158 | 51 | 166 | 1.11e-12 | 64.7 |
MS.gene015187.t1 | AT2G18600 | 27.966 | 118 | 82 | 2 | 33 | 150 | 55 | 169 | 2.06e-12 | 62.4 |
MS.gene015187.t1 | AT2G18600 | 27.966 | 118 | 82 | 2 | 33 | 150 | 55 | 169 | 2.06e-12 | 62.4 |
MS.gene015187.t1 | AT5G41340 | 32.381 | 105 | 67 | 3 | 53 | 155 | 9 | 111 | 2.46e-12 | 61.2 |
MS.gene015187.t1 | AT1G78870 | 28.037 | 107 | 70 | 2 | 8 | 114 | 9 | 108 | 8.18e-12 | 58.9 |
Find 53 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGTTTGGGCAGGGTCGGC+AGG | 0.288355 | 5.3:+9201295 | None:intergenic |
TGGGCAGGGTCGGCAGGGTT+TGG | 0.289293 | 5.3:+9201301 | None:intergenic |
TGCTCTATTCCTGGAAAGGC+TGG | 0.303153 | 5.3:-9203755 | MS.gene015187:CDS |
GTGCCATCAAGATTAGTTTC+AGG | 0.331960 | 5.3:+9203800 | None:intergenic |
GTTCCAGATGGATACACATT+AGG | 0.353940 | 5.3:+9201524 | None:intergenic |
ATAGATGATATCCTTCTGTT+TGG | 0.365717 | 5.3:+9201281 | None:intergenic |
GCATGGCATTGCTCTATTCC+TGG | 0.367991 | 5.3:-9203764 | MS.gene015187:CDS |
GCGATTACCCCAGCCTTTCC+AGG | 0.374909 | 5.3:+9203746 | None:intergenic |
TGATGGCACAATCAATTTGA+TGG | 0.385755 | 5.3:-9203786 | MS.gene015187:CDS |
CACCCTAATGTGTATCCATC+TGG | 0.401306 | 5.3:-9201527 | MS.gene015187:CDS |
TTGGCTGATCAAGCAGGTCT+TGG | 0.405631 | 5.3:+9201320 | None:intergenic |
TGCATTTGCCGCAGACTGAT+TGG | 0.415528 | 5.3:-9201637 | MS.gene015187:intron |
TGATATCCTTCTGTTTGGGC+AGG | 0.423017 | 5.3:+9201286 | None:intergenic |
TAGATGATATCCTTCTGTTT+GGG | 0.423210 | 5.3:+9201282 | None:intergenic |
TTACACTTTGGTGGTTTGCT+AGG | 0.425467 | 5.3:+9201569 | None:intergenic |
AAGCCTGAAACTAATCTTGA+TGG | 0.428228 | 5.3:-9203803 | MS.gene015187:CDS |
CTGTTTGGGCAGGGTCGGCA+GGG | 0.448451 | 5.3:+9201296 | None:intergenic |
ATTTGCTTCACTGTTATAGC+TGG | 0.450918 | 5.3:+9201355 | None:intergenic |
GCATTTGCCGCAGACTGATT+GGG | 0.456810 | 5.3:-9201636 | MS.gene015187:intron |
TGGCTATTACCCACTGACTA+TGG | 0.458954 | 5.3:-9201609 | MS.gene015187:CDS |
TTGCTTGTCTATACTTAATG+AGG | 0.462267 | 5.3:-9201498 | MS.gene015187:CDS |
TTCCAGATGGATACACATTA+GGG | 0.466067 | 5.3:+9201525 | None:intergenic |
CACAAACACTCAAACATGTC+TGG | 0.479757 | 5.3:-9203976 | None:intergenic |
TGAGGGAATTTACACTTTGG+TGG | 0.494788 | 5.3:+9201560 | None:intergenic |
TCCTTCTGTTTGGGCAGGGT+CGG | 0.496610 | 5.3:+9201291 | None:intergenic |
TACACTTTGGTGGTTTGCTA+GGG | 0.523028 | 5.3:+9201570 | None:intergenic |
GCTCTATTCCTGGAAAGGCT+GGG | 0.525549 | 5.3:-9203754 | MS.gene015187:CDS |
ACAGTGAAGCAAATCCTTGT+GGG | 0.536488 | 5.3:-9201346 | MS.gene015187:CDS |
CCTTGAGGGAATTTACACTT+TGG | 0.536806 | 5.3:+9201557 | None:intergenic |
CCGCAGACTGATTGGGAAGG+TGG | 0.537892 | 5.3:-9201629 | MS.gene015187:intron |
GCACAATCAATTTGATGGCA+TGG | 0.539659 | 5.3:-9203781 | MS.gene015187:CDS |
CAGGGTTTGGCTGATCAAGC+AGG | 0.542481 | 5.3:+9201314 | None:intergenic |
CTCTATTCCTGGAAAGGCTG+GGG | 0.551837 | 5.3:-9203753 | MS.gene015187:intron |
AGGATATCATCTATTCATCC+AGG | 0.555859 | 5.3:-9201272 | MS.gene015187:intron |
AACAGTGAAGCAAATCCTTG+TGG | 0.569117 | 5.3:-9201347 | MS.gene015187:CDS |
GATATCCTTCTGTTTGGGCA+GGG | 0.574166 | 5.3:+9201287 | None:intergenic |
TAGGGTGGAAGAAACCTTGA+GGG | 0.574913 | 5.3:+9201543 | None:intergenic |
TGCTCGTGGTCGTCTTGCTG+AGG | 0.582818 | 5.3:-9203950 | MS.gene015187:CDS |
GCATTGCTCTATTCCTGGAA+AGG | 0.586152 | 5.3:-9203759 | MS.gene015187:CDS |
GCCGACCCTGCCCAAACAGA+AGG | 0.591961 | 5.3:-9201292 | MS.gene015187:CDS |
GACAAGCAAACAGTTCCAGA+TGG | 0.593655 | 5.3:+9201512 | None:intergenic |
ATATAGCACTAGATAATAGA+CGG | 0.593797 | 5.3:+9200869 | None:intergenic |
CCAAAGTGTAAATTCCCTCA+AGG | 0.603400 | 5.3:-9201557 | MS.gene015187:CDS |
TTGCTGAGGAACGAAAATCA+TGG | 0.607851 | 5.3:-9203936 | MS.gene015187:CDS |
CACTGAAGACCATAGTCAGT+GGG | 0.613316 | 5.3:+9201600 | None:intergenic |
AACATGTCTGGTATTGCTCG+TGG | 0.617118 | 5.3:-9203964 | MS.gene015187:CDS |
TATAGCACTAGATAATAGAC+GGG | 0.633902 | 5.3:+9200870 | None:intergenic |
TTGCCGCAGACTGATTGGGA+AGG | 0.640092 | 5.3:-9201632 | MS.gene015187:intron |
CAGATGGATACACATTAGGG+TGG | 0.664595 | 5.3:+9201528 | None:intergenic |
TCACTGAAGACCATAGTCAG+TGG | 0.665523 | 5.3:+9201599 | None:intergenic |
TTAGGGTGGAAGAAACCTTG+AGG | 0.683744 | 5.3:+9201542 | None:intergenic |
GCAGGTCTTGGATACCCACA+AGG | 0.703119 | 5.3:+9201332 | None:intergenic |
CTGAGGAACGAAAATCATGG+AGG | 0.738075 | 5.3:-9203933 | MS.gene015187:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACATATTAACAATTCTTA+CGG | + | chr5.3:9203644-9203663 | None:intergenic | 15.0% |
!! | TATTTCATTAATCAAGTATT+GGG | - | chr5.3:9202078-9202097 | MS.gene015187:intron | 15.0% |
!! | TGTAAATATAAAACAATCAA+GGG | - | chr5.3:9201453-9201472 | MS.gene015187:intron | 15.0% |
!! | TTATTTCATTAATCAAGTAT+TGG | - | chr5.3:9202077-9202096 | MS.gene015187:intron | 15.0% |
!!! | TGATTTTTGATTTCAATTTA+GGG | - | chr5.3:9201002-9201021 | MS.gene015187:intron | 15.0% |
!!! | TTGATTTTTGATTTCAATTT+AGG | - | chr5.3:9201001-9201020 | MS.gene015187:intron | 15.0% |
!! | AAATTACGTTATGCAAAATA+GGG | + | chr5.3:9201848-9201867 | None:intergenic | 20.0% |
!! | ACAGAAAATATTATTACGTA+AGG | + | chr5.3:9203899-9203918 | None:intergenic | 20.0% |
!! | ACATCAATTGTAAATATTGA+TGG | + | chr5.3:9202889-9202908 | None:intergenic | 20.0% |
!! | ATATCCATTTGAAAAATGAA+GGG | + | chr5.3:9203608-9203627 | None:intergenic | 20.0% |
!! | CTCAAATTATTATTTGTGTT+GGG | - | chr5.3:9201263-9201282 | MS.gene015187:intron | 20.0% |
!! | CTGTAAATATAAAACAATCA+AGG | - | chr5.3:9201452-9201471 | MS.gene015187:intron | 20.0% |
!! | GACATTATAATAGTTTCAAA+TGG | + | chr5.3:9203401-9203420 | None:intergenic | 20.0% |
!! | TAAAAAACAGAGAAAAATGT+AGG | + | chr5.3:9200953-9200972 | None:intergenic | 20.0% |
!! | TATATCCATTTGAAAAATGA+AGG | + | chr5.3:9203609-9203628 | None:intergenic | 20.0% |
!! | TCTCAAATTATTATTTGTGT+TGG | - | chr5.3:9201262-9201281 | MS.gene015187:intron | 20.0% |
!!! | TACGTAATAATATTTTCTGT+AGG | - | chr5.3:9203899-9203918 | MS.gene015187:intron | 20.0% |
!!! | TCATTTTTCAAATGGATATA+CGG | - | chr5.3:9203609-9203628 | MS.gene015187:intron | 20.0% |
!!! | TTTATTTTGTTCTTCAACAT+TGG | + | chr5.3:9202524-9202543 | None:intergenic | 20.0% |
! | AAAAAAATATGCAACACCTT+AGG | + | chr5.3:9202059-9202078 | None:intergenic | 25.0% |
! | AAAATGTAGGAAATTACATG+AGG | + | chr5.3:9200940-9200959 | None:intergenic | 25.0% |
! | AAACGTGTTAAGAATTAACA+TGG | - | chr5.3:9201919-9201938 | MS.gene015187:intron | 25.0% |
! | AACTATAGCCAATTAGATTA+GGG | - | chr5.3:9203750-9203769 | MS.gene015187:intron | 25.0% |
! | AAGGATAGTAAAATAAGAAG+TGG | - | chr5.3:9202270-9202289 | MS.gene015187:intron | 25.0% |
! | AATAACAAAGAGACATAGAA+TGG | + | chr5.3:9202176-9202195 | None:intergenic | 25.0% |
! | AGAGAAAAGATATAGGAAAT+CGG | + | chr5.3:9202583-9202602 | None:intergenic | 25.0% |
! | ATCCTTAAGAGAAAAGATAT+AGG | + | chr5.3:9202590-9202609 | None:intergenic | 25.0% |
! | ATTAGGGAAAATTCGAAATA+TGG | - | chr5.3:9202664-9202683 | MS.gene015187:intron | 25.0% |
! | ATTATCATTCTTGCATGTTT+AGG | - | chr5.3:9203452-9203471 | MS.gene015187:intron | 25.0% |
! | CAAATTACGTTATGCAAAAT+AGG | + | chr5.3:9201849-9201868 | None:intergenic | 25.0% |
! | CAGGTTATACATATTACATA+CGG | + | chr5.3:9201728-9201747 | None:intergenic | 25.0% |
! | TAAGAATTAACATGGTATGT+TGG | - | chr5.3:9202014-9202033 | MS.gene015187:intron | 25.0% |
! | TCAATTGTAAACCTAATACA+AGG | + | chr5.3:9203124-9203143 | None:intergenic | 25.0% |
! | TTATCATTCTTGCATGTTTA+GGG | - | chr5.3:9203453-9203472 | MS.gene015187:intron | 25.0% |
! | TTATGTTTGTAAATGTTGAG+TGG | - | chr5.3:9203009-9203028 | MS.gene015187:intron | 25.0% |
!! | ATATTTCGAATTTTCCCTAA+TGG | + | chr5.3:9202665-9202684 | None:intergenic | 25.0% |
!! | TAAACCAATCTAAAACTCTT+TGG | + | chr5.3:9202325-9202344 | None:intergenic | 25.0% |
!! | TAATTGAATTAGTGATAGTG+TGG | - | chr5.3:9201607-9201626 | MS.gene015187:CDS | 25.0% |
!! | TATTTCGAATTTTCCCTAAT+GGG | + | chr5.3:9202664-9202683 | None:intergenic | 25.0% |
!! | TTCCTATATCTTTTCTCTTA+AGG | - | chr5.3:9202585-9202604 | MS.gene015187:intron | 25.0% |
!!! | AATACCCTTCATTTTTCAAA+TGG | - | chr5.3:9203601-9203620 | MS.gene015187:intron | 25.0% |
!!! | ATTAATCAAGTATTGGGTTA+TGG | - | chr5.3:9202084-9202103 | MS.gene015187:intron | 25.0% |
!!! | ATTGAAGAGTTTTAGATTTG+TGG | - | chr5.3:9202421-9202440 | MS.gene015187:intron | 25.0% |
!!! | TAACACGTTTTAGTTAAAGT+CGG | + | chr5.3:9201909-9201928 | None:intergenic | 25.0% |
AATAAATCCTATCACAGTCT+TGG | - | chr5.3:9202538-9202557 | MS.gene015187:intron | 30.0% | |
AATCAAGGGATAACTAGAAT+TGG | - | chr5.3:9201467-9201486 | MS.gene015187:intron | 30.0% | |
ACAATTGATGTTAACTGACA+AGG | - | chr5.3:9202898-9202917 | MS.gene015187:intron | 30.0% | |
ATAGATGATATCCTTCTGTT+TGG | + | chr5.3:9203560-9203579 | None:intergenic | 30.0% | |
ATTATTATTTGTGTTGGGTC+TGG | - | chr5.3:9201268-9201287 | MS.gene015187:intron | 30.0% | |
CACATATGATATGACAACTA+GGG | + | chr5.3:9201411-9201430 | None:intergenic | 30.0% | |
CCAGTATCAGAAATAAAGTA+TGG | + | chr5.3:9202803-9202822 | None:intergenic | 30.0% | |
CTTATACAAAATAAGTCCCA+GGG | + | chr5.3:9202136-9202155 | None:intergenic | 30.0% | |
GAACTATAGCCAATTAGATT+AGG | - | chr5.3:9203749-9203768 | MS.gene015187:intron | 30.0% | |
GAAGGAATATTACTAGTGTT+TGG | + | chr5.3:9202460-9202479 | None:intergenic | 30.0% | |
TAATATGTTTGCTCTTCAAG+TGG | - | chr5.3:9203654-9203673 | MS.gene015187:intron | 30.0% | |
TAGATGATATCCTTCTGTTT+GGG | + | chr5.3:9203559-9203578 | None:intergenic | 30.0% | |
TATCATTCTTGCATGTTTAG+GGG | - | chr5.3:9203454-9203473 | MS.gene015187:intron | 30.0% | |
TATGTGCCTGAATTTATGTT+AGG | - | chr5.3:9201425-9201444 | MS.gene015187:intron | 30.0% | |
TATTACATACGGAATAAGCT+TGG | + | chr5.3:9201717-9201736 | None:intergenic | 30.0% | |
TTAAGGATTCAGAGTAGAAT+TGG | - | chr5.3:9202602-9202621 | MS.gene015187:intron | 30.0% | |
TTCAATACAATCACATGTGT+CGG | + | chr5.3:9201231-9201250 | None:intergenic | 30.0% | |
TTGAATATTCCCAAGTTTGA+AGG | - | chr5.3:9201632-9201651 | MS.gene015187:intron | 30.0% | |
TTGCTTGTCTATACTTAATG+AGG | - | chr5.3:9203340-9203359 | MS.gene015187:intron | 30.0% | |
TTTAAGCACCCTAATCTAAT+TGG | + | chr5.3:9203761-9203780 | None:intergenic | 30.0% | |
TTTGAAGGACTTGTAGTTTA+AGG | - | chr5.3:9201647-9201666 | MS.gene015187:intron | 30.0% | |
! | CACTTTTATGAAACCCATTA+GGG | - | chr5.3:9202648-9202667 | MS.gene015187:intron | 30.0% |
! | TTCAATTTTTACCAGGTTAC+TGG | + | chr5.3:9202496-9202515 | None:intergenic | 30.0% |
!! | CCATACTTTATTTCTGATAC+TGG | - | chr5.3:9202800-9202819 | MS.gene015187:intron | 30.0% |
!! | GCTATTTTACAACAATGTTC+AGG | + | chr5.3:9201747-9201766 | None:intergenic | 30.0% |
!! | GTTTTAGATTTGTGGTTTGA+TGG | - | chr5.3:9202429-9202448 | MS.gene015187:intron | 30.0% |
!! | TGAAAAATGAAGGGTATTTC+AGG | + | chr5.3:9203599-9203618 | None:intergenic | 30.0% |
AAATAAAGTATGGATGCAGC+AGG | + | chr5.3:9202793-9202812 | None:intergenic | 35.0% | |
AAATAGCAGCTATAGTGCTA+TGG | - | chr5.3:9201760-9201779 | MS.gene015187:intron | 35.0% | |
AACAATTCTTACGGAACAGT+GGG | + | chr5.3:9203635-9203654 | None:intergenic | 35.0% | |
AACTACAAGTCCTTCAAACT+TGG | + | chr5.3:9201645-9201664 | None:intergenic | 35.0% | |
AAGCCTGAAACTAATCTTGA+TGG | - | chr5.3:9201035-9201054 | MS.gene015187:intron | 35.0% | |
ACTACAAGTCCTTCAAACTT+GGG | + | chr5.3:9201644-9201663 | None:intergenic | 35.0% | |
ACTGGACTTGATTTCATTGA+AGG | + | chr5.3:9202478-9202497 | None:intergenic | 35.0% | |
AGGATATCATCTATTCATCC+AGG | - | chr5.3:9203566-9203585 | MS.gene015187:intron | 35.0% | |
AGTCGTCCTAACATAAATTC+AGG | + | chr5.3:9201434-9201453 | None:intergenic | 35.0% | |
ATTTGCTTCACTGTTATAGC+TGG | + | chr5.3:9203486-9203505 | None:intergenic | 35.0% | |
CTAAATTACTCTCACCAACA+AGG | + | chr5.3:9201500-9201519 | None:intergenic | 35.0% | |
GAGTTGTTAACTAGGTAGTT+AGG | + | chr5.3:9202704-9202723 | None:intergenic | 35.0% | |
GCACATATGATATGACAACT+AGG | + | chr5.3:9201412-9201431 | None:intergenic | 35.0% | |
GCTAAAACGTTGTCAAATAG+TGG | - | chr5.3:9201805-9201824 | MS.gene015187:intron | 35.0% | |
GCTTATACAAAATAAGTCCC+AGG | + | chr5.3:9202137-9202156 | None:intergenic | 35.0% | |
GTTTGTAAATGTTGAGTGGT+TGG | - | chr5.3:9203013-9203032 | MS.gene015187:intron | 35.0% | |
TAACAATTCTTACGGAACAG+TGG | + | chr5.3:9203636-9203655 | None:intergenic | 35.0% | |
TAACACAGTGCAATAAGAGT+AGG | - | chr5.3:9203690-9203709 | MS.gene015187:intron | 35.0% | |
TCAATCACGAGTTGTTAACT+AGG | + | chr5.3:9202712-9202731 | None:intergenic | 35.0% | |
TGATGGCACAATCAATTTGA+TGG | - | chr5.3:9201052-9201071 | MS.gene015187:intron | 35.0% | |
TTCCAGATGGATACACATTA+GGG | + | chr5.3:9203316-9203335 | None:intergenic | 35.0% | |
TTGTGTTTGTGCTTCATAGA+CGG | - | chr5.3:9201353-9201372 | MS.gene015187:CDS | 35.0% | |
! | AAGTAACGACTTTTCTCCTA+AGG | - | chr5.3:9202040-9202059 | MS.gene015187:intron | 35.0% |
! | ACCAATCTAAAACTCTTTGG+TGG | + | chr5.3:9202322-9202341 | None:intergenic | 35.0% |
! | ATATTTTCTGTAGGATGCTG+TGG | - | chr5.3:9203908-9203927 | MS.gene015187:intron | 35.0% |
! | GGAGTATTATTCAACTAGAC+AGG | + | chr5.3:9201696-9201715 | None:intergenic | 35.0% |
! | TCAGTTAGCTCTTATCATAC+AGG | + | chr5.3:9202850-9202869 | None:intergenic | 35.0% |
!! | CCACTTTTATGAAACCCATT+AGG | - | chr5.3:9202647-9202666 | MS.gene015187:intron | 35.0% |
!! | CCTAATGGGTTTCATAAAAG+TGG | + | chr5.3:9202650-9202669 | None:intergenic | 35.0% |
!! | GGTTGCTTTCAATTTTTACC+AGG | + | chr5.3:9202503-9202522 | None:intergenic | 35.0% |
!! | TATTGTCAGAAGTGTCTTGT+TGG | - | chr5.3:9201529-9201548 | MS.gene015187:CDS | 35.0% |
!!! | TCCACCAAAGAGTTTTAGAT+TGG | - | chr5.3:9202318-9202337 | MS.gene015187:intron | 35.0% |
AACAGTGAAGCAAATCCTTG+TGG | - | chr5.3:9203491-9203510 | MS.gene015187:intron | 40.0% | |
ACACTTCTAATCGAAGGCAA+AGG | - | chr5.3:9201168-9201187 | MS.gene015187:intron | 40.0% | |
ACAGTGAAGCAAATCCTTGT+GGG | - | chr5.3:9203492-9203511 | MS.gene015187:intron | 40.0% | |
ACATAGAATGGCACTGCAAA+TGG | + | chr5.3:9202164-9202183 | None:intergenic | 40.0% | |
ATGATCTGCTTGCTCAACAT+TGG | - | chr5.3:9203144-9203163 | MS.gene015187:intron | 40.0% | |
CAGACAAACGTGTCAAACAT+CGG | + | chr5.3:9201199-9201218 | None:intergenic | 40.0% | |
CCAAAGTGTAAATTCCCTCA+AGG | - | chr5.3:9203281-9203300 | MS.gene015187:intron | 40.0% | |
CCTTGAGGGAATTTACACTT+TGG | + | chr5.3:9203284-9203303 | None:intergenic | 40.0% | |
CTAATACAAGGCATAACCTC+AGG | + | chr5.3:9203112-9203131 | None:intergenic | 40.0% | |
CTGAGGTTATGCCTTGTATT+AGG | - | chr5.3:9203110-9203129 | MS.gene015187:intron | 40.0% | |
GAATTGGATTGTTGCCTTGT+TGG | - | chr5.3:9201483-9201502 | MS.gene015187:intron | 40.0% | |
GCTATAGTGCTATGGTATAG+CGG | - | chr5.3:9201768-9201787 | MS.gene015187:intron | 40.0% | |
GTGGTGTGTGTGATTATTGA+AGG | + | chr5.3:9202631-9202650 | None:intergenic | 40.0% | |
GTTCCAGATGGATACACATT+AGG | + | chr5.3:9203317-9203336 | None:intergenic | 40.0% | |
TAGAAAACCCGTTCAATCAC+AGG | + | chr5.3:9202215-9202234 | None:intergenic | 40.0% | |
TCCACTGAACATTTGACTGA+AGG | - | chr5.3:9202251-9202270 | MS.gene015187:intron | 40.0% | |
TCCTTCAGTCAAATGTTCAG+TGG | + | chr5.3:9202255-9202274 | None:intergenic | 40.0% | |
TCTTGTTGCCTGTGATTGAA+CGG | - | chr5.3:9202204-9202223 | MS.gene015187:intron | 40.0% | |
TGAAATCAAGTCCAGTAACC+TGG | - | chr5.3:9202482-9202501 | MS.gene015187:intron | 40.0% | |
TGAGGGAATTTACACTTTGG+TGG | + | chr5.3:9203281-9203300 | None:intergenic | 40.0% | |
TGATCTGCTTGCTCAACATT+GGG | - | chr5.3:9203145-9203164 | MS.gene015187:intron | 40.0% | |
TTCACATGCTTCTGAATCTG+TGG | - | chr5.3:9203423-9203442 | MS.gene015187:intron | 40.0% | |
TTGCTGAGGAACGAAAATCA+TGG | - | chr5.3:9200902-9200921 | MS.gene015187:CDS | 40.0% | |
! | CCTAATTAGCACTTTTCCCA+CGG | - | chr5.3:9203800-9203819 | MS.gene015187:CDS | 40.0% |
! | GCACAATCAATTTGATGGCA+TGG | - | chr5.3:9201057-9201076 | MS.gene015187:intron | 40.0% |
! | GTTGGAGTTTTGCGTTTGTT+AGG | - | chr5.3:9201547-9201566 | MS.gene015187:CDS | 40.0% |
! | TTGCCTTCGATTAGAAGTGT+TGG | + | chr5.3:9201168-9201187 | None:intergenic | 40.0% |
!! | CGTGGGAAAAGTGCTAATTA+GGG | + | chr5.3:9203802-9203821 | None:intergenic | 40.0% |
!! | CTGATACTGGTGTTGTACAA+TGG | - | chr5.3:9202813-9202832 | MS.gene015187:intron | 40.0% |
!! | GGTATTTCAGGTTATCTACC+TGG | + | chr5.3:9203587-9203606 | None:intergenic | 40.0% |
!! | GTGCCATCAAGATTAGTTTC+AGG | + | chr5.3:9201041-9201060 | None:intergenic | 40.0% |
!! | TACACTTTGGTGGTTTGCTA+GGG | + | chr5.3:9203271-9203290 | None:intergenic | 40.0% |
!! | TTACACTTTGGTGGTTTGCT+AGG | + | chr5.3:9203272-9203291 | None:intergenic | 40.0% |
AAACAATACAAGCACCCTGG+AGG | + | chr5.3:9203858-9203877 | None:intergenic | 45.0% | |
ATGTCACATTCTGCTACCTG+AGG | - | chr5.3:9203093-9203112 | MS.gene015187:intron | 45.0% | |
CAATGCACCAAGACTGTGAT+AGG | + | chr5.3:9202548-9202567 | None:intergenic | 45.0% | |
CACAAACAATACAAGCACCC+TGG | + | chr5.3:9203861-9203880 | None:intergenic | 45.0% | |
CACCCTAATGTGTATCCATC+TGG | - | chr5.3:9203311-9203330 | MS.gene015187:intron | 45.0% | |
CACTGAAGACCATAGTCAGT+GGG | + | chr5.3:9203241-9203260 | None:intergenic | 45.0% | |
CAGATGGATACACATTAGGG+TGG | + | chr5.3:9203313-9203332 | None:intergenic | 45.0% | |
CATTCTTGCATGTTTAGGGG+TGG | - | chr5.3:9203457-9203476 | MS.gene015187:intron | 45.0% | |
CTGAGGAACGAAAATCATGG+AGG | - | chr5.3:9200905-9200924 | MS.gene015187:CDS | 45.0% | |
CTTGTTGCCTGTGATTGAAC+GGG | - | chr5.3:9202205-9202224 | MS.gene015187:intron | 45.0% | |
GACAAGCAAACAGTTCCAGA+TGG | + | chr5.3:9203329-9203348 | None:intergenic | 45.0% | |
GATATCCTTCTGTTTGGGCA+GGG | + | chr5.3:9203554-9203573 | None:intergenic | 45.0% | |
GCACCAACACTTCTAATCGA+AGG | - | chr5.3:9201162-9201181 | MS.gene015187:intron | 45.0% | |
GCATTGCTCTATTCCTGGAA+AGG | - | chr5.3:9201079-9201098 | MS.gene015187:intron | 45.0% | |
TAGGGTGGAAGAAACCTTGA+GGG | + | chr5.3:9203298-9203317 | None:intergenic | 45.0% | |
TCACTGAAGACCATAGTCAG+TGG | + | chr5.3:9203242-9203261 | None:intergenic | 45.0% | |
TGATATCCTTCTGTTTGGGC+AGG | + | chr5.3:9203555-9203574 | None:intergenic | 45.0% | |
TTAGGGTGGAAGAAACCTTG+AGG | + | chr5.3:9203299-9203318 | None:intergenic | 45.0% | |
! | AATCAGCGTCAAGAAAGCGT+TGG | + | chr5.3:9202767-9202786 | None:intergenic | 45.0% |
! | TGAGTGGTTGGTCAGTAGTT+TGG | - | chr5.3:9203025-9203044 | MS.gene015187:intron | 45.0% |
! | TGGCTATTACCCACTGACTA+TGG | - | chr5.3:9203229-9203248 | MS.gene015187:intron | 45.0% |
!! | AAAGTCGGTGTTGTCAATCG+CGG | + | chr5.3:9201894-9201913 | None:intergenic | 45.0% |
!! | ACTAGGTAGTTAGGTGCTGA+TGG | + | chr5.3:9202695-9202714 | None:intergenic | 45.0% |
!! | CCGTGGGAAAAGTGCTAATT+AGG | + | chr5.3:9203803-9203822 | None:intergenic | 45.0% |
!! | GGAAAAGTGCTAATTAGGGC+GGG | + | chr5.3:9203798-9203817 | None:intergenic | 45.0% |
!! | GGGAAAAGTGCTAATTAGGG+CGG | + | chr5.3:9203799-9203818 | None:intergenic | 45.0% |
!! | TAGAAGTGTTGGTGCTACAG+AGG | + | chr5.3:9201157-9201176 | None:intergenic | 45.0% |
AAGCCTCATTCCACTGAGTG+GGG | + | chr5.3:9202386-9202405 | None:intergenic | 50.0% | |
ACCATGAAACCAGTCCTCCA+GGG | - | chr5.3:9203841-9203860 | MS.gene015187:intron | 50.0% | |
ATGTAACCTACCCCACTCAG+TGG | - | chr5.3:9202373-9202392 | MS.gene015187:intron | 50.0% | |
CAAGCCTCATTCCACTGAGT+GGG | + | chr5.3:9202387-9202406 | None:intergenic | 50.0% | |
CTCTATTCCTGGAAAGGCTG+GGG | - | chr5.3:9201085-9201104 | MS.gene015187:intron | 50.0% | |
GCATGGCATTGCTCTATTCC+TGG | - | chr5.3:9201074-9201093 | MS.gene015187:intron | 50.0% | |
GCATTTGCCGCAGACTGATT+GGG | - | chr5.3:9203202-9203221 | MS.gene015187:intron | 50.0% | |
GCTCTATTCCTGGAAAGGCT+GGG | - | chr5.3:9201084-9201103 | MS.gene015187:intron | 50.0% | |
GTCCAAATGACCTAAGCCGT+GGG | + | chr5.3:9203819-9203838 | None:intergenic | 50.0% | |
TACCATGAAACCAGTCCTCC+AGG | - | chr5.3:9203840-9203859 | MS.gene015187:intron | 50.0% | |
TCAAGCCTCATTCCACTGAG+TGG | + | chr5.3:9202388-9202407 | None:intergenic | 50.0% | |
TGCATTTGCCGCAGACTGAT+TGG | - | chr5.3:9203201-9203220 | MS.gene015187:intron | 50.0% | |
TGCTCTATTCCTGGAAAGGC+TGG | - | chr5.3:9201083-9201102 | MS.gene015187:intron | 50.0% | |
TTCCCACGGCTTAGGTCATT+TGG | - | chr5.3:9203814-9203833 | MS.gene015187:CDS | 50.0% | |
TTGGCTGATCAAGCAGGTCT+TGG | + | chr5.3:9203521-9203540 | None:intergenic | 50.0% | |
! | TAGCACTTTTCCCACGGCTT+AGG | - | chr5.3:9203806-9203825 | MS.gene015187:CDS | 50.0% |
!! | TGCTTATTGACTCTCGCCCT+GGG | - | chr5.3:9202117-9202136 | MS.gene015187:intron | 50.0% |
!! | TGGAGGACTGGTTTCATGGT+AGG | + | chr5.3:9203841-9203860 | None:intergenic | 50.0% |
!! | TTGCTTATTGACTCTCGCCC+TGG | - | chr5.3:9202116-9202135 | MS.gene015187:intron | 50.0% |
ATACAAGCACCCTGGAGGAC+TGG | + | chr5.3:9203853-9203872 | None:intergenic | 55.0% | |
CAGGGTTTGGCTGATCAAGC+AGG | + | chr5.3:9203527-9203546 | None:intergenic | 55.0% | |
CCACCTTCCCAATCAGTCTG+CGG | + | chr5.3:9203212-9203231 | None:intergenic | 55.0% | |
CTACCCCACTCAGTGGAATG+AGG | - | chr5.3:9202380-9202399 | MS.gene015187:intron | 55.0% | |
CTCATTCCACTGAGTGGGGT+AGG | + | chr5.3:9202382-9202401 | None:intergenic | 55.0% | |
GCAGGTCTTGGATACCCACA+AGG | + | chr5.3:9203509-9203528 | None:intergenic | 55.0% | |
GGTCCAAATGACCTAAGCCG+TGG | + | chr5.3:9203820-9203839 | None:intergenic | 55.0% | |
TCCTTCTGTTTGGGCAGGGT+CGG | + | chr5.3:9203550-9203569 | None:intergenic | 55.0% | |
TTGCCGCAGACTGATTGGGA+AGG | - | chr5.3:9203206-9203225 | MS.gene015187:intron | 55.0% | |
! | GGTGTTGTCAATCGCGGTCT+TGG | + | chr5.3:9201888-9201907 | None:intergenic | 55.0% |
!! | ACCCTGGAGGACTGGTTTCA+TGG | + | chr5.3:9203845-9203864 | None:intergenic | 55.0% |
CCGCAGACTGATTGGGAAGG+TGG | - | chr5.3:9203209-9203228 | MS.gene015187:intron | 60.0% | |
GCGATTACCCCAGCCTTTCC+AGG | + | chr5.3:9201095-9201114 | None:intergenic | 60.0% | |
TGCTCGTGGTCGTCTTGCTG+AGG | - | chr5.3:9200888-9200907 | MS.gene015187:CDS | 60.0% | |
CTGTTTGGGCAGGGTCGGCA+GGG | + | chr5.3:9203545-9203564 | None:intergenic | 65.0% | |
GCCGACCCTGCCCAAACAGA+AGG | - | chr5.3:9203546-9203565 | MS.gene015187:intron | 65.0% | |
TCTGTTTGGGCAGGGTCGGC+AGG | + | chr5.3:9203546-9203565 | None:intergenic | 65.0% | |
TGGGCAGGGTCGGCAGGGTT+TGG | + | chr5.3:9203540-9203559 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 9200877 | 9203983 | 9200877 | ID=MS.gene015187 |
chr5.3 | mRNA | 9200877 | 9203983 | 9200877 | ID=MS.gene015187.t1;Parent=MS.gene015187 |
chr5.3 | exon | 9203918 | 9203983 | 9203918 | ID=MS.gene015187.t1.exon1;Parent=MS.gene015187.t1 |
chr5.3 | CDS | 9203918 | 9203983 | 9203918 | ID=cds.MS.gene015187.t1;Parent=MS.gene015187.t1 |
chr5.3 | exon | 9203754 | 9203837 | 9203754 | ID=MS.gene015187.t1.exon2;Parent=MS.gene015187.t1 |
chr5.3 | CDS | 9203754 | 9203837 | 9203754 | ID=cds.MS.gene015187.t1;Parent=MS.gene015187.t1 |
chr5.3 | exon | 9201493 | 9201645 | 9201493 | ID=MS.gene015187.t1.exon3;Parent=MS.gene015187.t1 |
chr5.3 | CDS | 9201493 | 9201645 | 9201493 | ID=cds.MS.gene015187.t1;Parent=MS.gene015187.t1 |
chr5.3 | exon | 9201273 | 9201386 | 9201273 | ID=MS.gene015187.t1.exon4;Parent=MS.gene015187.t1 |
chr5.3 | CDS | 9201273 | 9201386 | 9201273 | ID=cds.MS.gene015187.t1;Parent=MS.gene015187.t1 |
chr5.3 | exon | 9200877 | 9200939 | 9200877 | ID=MS.gene015187.t1.exon5;Parent=MS.gene015187.t1 |
chr5.3 | CDS | 9200877 | 9200939 | 9200877 | ID=cds.MS.gene015187.t1;Parent=MS.gene015187.t1 |
Gene Sequence |
Protein sequence |