AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049883

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049883.t1 MTR_8g085690 98.810 168 2 0 1 168 1 168 2.15e-122 342
MS.gene049883.t1 MTR_7g116940 51.034 145 71 0 23 167 2 146 1.42e-55 172
MS.gene049883.t1 MTR_1g021150 51.034 145 71 0 23 167 2 146 4.93e-55 171
MS.gene049883.t1 MTR_5g075580 51.034 145 71 0 23 167 2 146 6.13e-55 170
MS.gene049883.t1 MTR_3g062450 50.345 145 72 0 23 167 2 146 2.65e-54 169
MS.gene049883.t1 MTR_4g073240 51.034 145 71 0 23 167 2 146 4.02e-54 168
MS.gene049883.t1 MTR_8g071040 49.655 145 73 0 23 167 2 146 5.95e-54 168
MS.gene049883.t1 MTR_7g116940 48.684 152 71 1 23 167 2 153 1.53e-52 164
MS.gene049883.t1 MTR_1g021150 51.613 124 60 0 44 167 31 154 3.17e-45 146
MS.gene049883.t1 MTR_5g075580 52.137 117 56 0 51 167 1 117 3.33e-43 139
MS.gene049883.t1 MTR_4g073240 51.282 117 57 0 51 167 1 117 5.87e-42 136
MS.gene049883.t1 MTR_7g116940 53.922 102 47 0 23 124 2 103 7.50e-40 131
MS.gene049883.t1 MTR_2g078010 39.161 143 87 0 25 167 8 150 1.53e-34 119
MS.gene049883.t1 MTR_3g098780 42.568 148 77 4 26 168 6 150 2.89e-31 111
MS.gene049883.t1 MTR_2g078010 39.231 130 79 0 25 154 8 137 5.07e-31 109
MS.gene049883.t1 MTR_3g098780 42.568 148 77 4 26 168 30 174 6.37e-31 111
MS.gene049883.t1 MTR_2g078010 35.669 157 87 1 25 167 8 164 1.57e-30 109
MS.gene049883.t1 MTR_4g108080 34.091 132 87 0 25 156 7 138 2.32e-27 100
MS.gene049883.t1 MTR_8g468530 34.091 132 87 0 25 156 23 154 7.07e-27 99.8
MS.gene049883.t1 MTR_2g078010 43.564 101 57 0 25 125 8 108 3.25e-26 96.3
MS.gene049883.t1 MTR_1g095510 43.443 122 65 2 15 135 37 155 5.44e-26 98.2
MS.gene049883.t1 MTR_1g095510 43.333 120 64 2 15 133 37 153 3.07e-25 95.9
MS.gene049883.t1 MTR_4g076200 37.097 124 78 0 25 148 35 158 7.41e-25 95.1
MS.gene049883.t1 MTR_1g095510 46.237 93 50 0 43 135 9 101 2.68e-24 92.4
MS.gene049883.t1 MTR_4g073240 48.148 81 42 0 87 167 4 84 3.13e-24 90.5
MS.gene049883.t1 MTR_4g108080 37.037 108 68 0 25 132 7 114 8.25e-24 90.5
MS.gene049883.t1 MTR_5g009020 36.290 124 79 0 25 148 35 158 3.04e-23 90.9
MS.gene049883.t1 MTR_4g076200 38.679 106 65 0 43 148 12 117 9.71e-23 88.2
MS.gene049883.t1 MTR_3g110110 36.667 120 73 2 20 136 1 120 5.82e-20 81.6
MS.gene049883.t1 MTR_5g016630 36.111 108 67 1 50 155 37 144 1.63e-19 80.5
MS.gene049883.t1 MTR_4g094872 37.963 108 65 1 50 155 37 144 2.24e-19 80.1
MS.gene049883.t1 MTR_8g076490 36.207 116 70 3 9 123 4 116 5.43e-18 76.6
MS.gene049883.t1 MTR_2g096690 37.374 99 49 1 50 135 33 131 1.02e-17 75.9
MS.gene049883.t1 MTR_2g096690 37.374 99 49 1 50 135 33 131 1.03e-17 76.3
MS.gene049883.t1 MTR_7g087590 31.034 116 80 0 25 140 13 128 1.30e-17 77.8
MS.gene049883.t1 MTR_4g063490 31.624 117 67 1 49 152 32 148 6.46e-17 73.9
MS.gene049883.t1 MTR_4g108080 29.825 114 72 1 51 156 25 138 9.37e-17 73.2
MS.gene049883.t1 MTR_5g021260 33.613 119 71 3 9 123 2 116 2.00e-16 72.4
MS.gene049883.t1 MTR_2g096690 50.820 61 30 0 50 110 33 93 1.08e-14 67.0
MS.gene049883.t1 MTR_5g019480 29.851 134 88 3 9 138 16 147 1.06e-13 65.9
MS.gene049883.t1 MTR_5g019480 29.851 134 88 3 9 138 19 150 1.28e-13 65.9
MS.gene049883.t1 MTR_8g028920 29.268 123 85 2 48 168 26 148 1.76e-13 65.5
MS.gene049883.t1 MTR_7g451800 32.836 134 79 4 17 139 30 163 1.89e-13 67.0
MS.gene049883.t1 MTR_7g047620 32.836 134 79 4 17 139 30 163 1.89e-13 67.0
MS.gene049883.t1 MTR_8g098595 28.455 123 86 2 48 168 11 133 4.60e-13 63.9
MS.gene049883.t1 MTR_4g086440 32.540 126 75 3 21 136 33 158 4.66e-13 65.9
MS.gene049883.t1 MTR_7g047570 32.090 134 80 4 17 139 30 163 7.49e-13 65.5
MS.gene049883.t1 MTR_7g451770 32.090 134 80 4 17 139 30 163 7.49e-13 65.5
MS.gene049883.t1 MTR_2g013650 33.600 125 71 4 24 137 681 804 7.83e-13 65.9
MS.gene049883.t1 MTR_8g028920 32.075 106 70 2 65 168 4 109 8.53e-13 62.8
MS.gene049883.t1 MTR_4g020620 32.800 125 72 4 24 137 628 751 1.90e-12 64.7
MS.gene049883.t1 MTR_4g106690 31.746 126 78 4 48 168 26 148 3.11e-12 62.0
MS.gene049883.t1 MTR_4g088835 36.559 93 47 4 56 137 703 794 3.45e-12 63.9
MS.gene049883.t1 MTR_4g020620 32.800 125 72 4 24 137 570 693 4.65e-12 63.5
MS.gene049883.t1 MTR_1g112730 30.345 145 80 5 4 137 844 978 7.45e-12 63.2
MS.gene049883.t1 MTR_8g023380 27.907 129 76 3 22 141 5 125 8.44e-12 61.6
MS.gene049883.t1 MTR_0332s0040 34.234 111 60 5 55 154 187 295 1.13e-11 62.4
MS.gene049883.t1 MTR_0274s0030 32.258 124 74 3 24 137 113 236 1.33e-11 62.0
MS.gene049883.t1 MTR_4g007210 40.000 90 43 4 56 134 112 201 5.06e-11 60.5
MS.gene049883.t1 MTR_1g092465 36.082 97 42 4 56 137 267 358 5.56e-11 60.1
MS.gene049883.t1 MTR_1g092460 35.052 97 43 4 56 137 208 299 7.93e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049883.t1 AT3G13550 66.851 181 47 1 1 168 2 182 6.80e-87 253
MS.gene049883.t1 AT3G13550 67.785 149 35 1 1 136 2 150 1.31e-69 208
MS.gene049883.t1 AT3G08690 51.034 145 71 0 23 167 2 146 4.56e-56 173
MS.gene049883.t1 AT3G08690 51.034 145 71 0 23 167 2 146 4.56e-56 173
MS.gene049883.t1 AT2G16740 51.724 145 70 0 23 167 2 146 9.38e-56 172
MS.gene049883.t1 AT1G64230 51.724 145 70 0 23 167 2 146 2.27e-55 171
MS.gene049883.t1 AT1G64230 51.724 145 70 0 23 167 2 146 2.27e-55 171
MS.gene049883.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene049883.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene049883.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene049883.t1 AT5G56150 50.345 145 72 0 23 167 2 146 1.41e-54 169
MS.gene049883.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene049883.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene049883.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene049883.t1 AT4G27960 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene049883.t1 AT4G27960 48.649 148 76 0 20 167 29 176 9.24e-53 166
MS.gene049883.t1 AT5G41700 50.000 146 72 1 23 167 2 147 7.22e-52 162
MS.gene049883.t1 AT1G64230 48.052 154 71 1 23 167 2 155 3.55e-51 161
MS.gene049883.t1 AT3G08700 47.260 146 76 1 23 167 2 147 2.52e-49 156
MS.gene049883.t1 AT3G08700 47.260 146 76 1 23 167 2 147 2.52e-49 156
MS.gene049883.t1 AT1G64230 39.572 187 71 1 23 167 2 188 4.18e-46 149
MS.gene049883.t1 AT1G64230 39.572 187 71 1 23 167 2 188 4.18e-46 149
MS.gene049883.t1 AT5G41700 52.427 103 49 0 23 125 2 104 8.91e-39 129
MS.gene049883.t1 AT5G56150 50.000 108 54 0 23 130 2 109 1.18e-38 128
MS.gene049883.t1 AT5G53300 51.376 109 49 1 23 131 2 106 5.70e-38 126
MS.gene049883.t1 AT1G36340 50.400 125 62 0 43 167 28 152 1.99e-36 124
MS.gene049883.t1 AT1G36340 50.400 125 62 0 43 167 28 152 1.99e-36 124
MS.gene049883.t1 AT1G78870 40.559 143 85 0 25 167 8 150 9.55e-36 122
MS.gene049883.t1 AT1G16890 39.161 143 87 0 25 167 8 150 1.23e-34 119
MS.gene049883.t1 AT1G16890 39.189 148 85 1 25 167 12 159 2.93e-33 115
MS.gene049883.t1 AT5G50870 38.621 145 87 2 26 168 6 150 3.12e-29 106
MS.gene049883.t1 AT1G78870 42.727 110 63 0 58 167 8 117 4.98e-28 101
MS.gene049883.t1 AT1G14400 34.028 144 90 1 25 163 7 150 6.80e-28 102
MS.gene049883.t1 AT1G14400 34.028 144 90 1 25 163 7 150 6.80e-28 102
MS.gene049883.t1 AT1G16890 41.818 110 64 0 58 167 8 117 1.73e-27 100
MS.gene049883.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene049883.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene049883.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene049883.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene049883.t1 AT1G78870 44.554 101 56 0 25 125 8 108 6.66e-27 98.2
MS.gene049883.t1 AT5G62540 34.532 139 91 0 23 161 5 143 1.12e-26 99.0
MS.gene049883.t1 AT5G50870 37.821 156 84 4 26 168 6 161 2.23e-26 99.8
MS.gene049883.t1 AT1G78870 42.342 111 63 1 58 167 8 118 3.21e-26 96.7
MS.gene049883.t1 AT3G24515 37.821 156 84 3 26 168 10 165 1.96e-25 100
MS.gene049883.t1 AT3G20060 37.500 128 78 1 10 135 22 149 6.81e-24 92.4
MS.gene049883.t1 AT2G32790 34.839 155 100 1 15 168 22 176 1.35e-23 91.7
MS.gene049883.t1 AT1G50490 36.765 136 84 1 15 148 26 161 3.14e-23 90.9
MS.gene049883.t1 AT3G24515 32.044 181 85 3 26 168 10 190 6.56e-22 91.3
MS.gene049883.t1 AT3G20060 39.583 96 58 0 40 135 9 104 1.15e-20 82.8
MS.gene049883.t1 AT5G25760 37.500 120 72 2 20 136 1 120 1.25e-20 83.6
MS.gene049883.t1 AT5G25760 37.500 120 72 2 20 136 1 120 1.25e-20 83.6
MS.gene049883.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene049883.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene049883.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene049883.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene049883.t1 AT3G57870 39.423 104 61 1 50 151 38 141 6.34e-19 79.0
MS.gene049883.t1 AT3G46460 37.374 99 49 1 50 135 33 131 5.97e-18 76.6
MS.gene049883.t1 AT1G75440 36.975 119 65 4 11 123 2 116 4.47e-17 74.3
MS.gene049883.t1 AT5G59300 35.354 99 51 1 50 135 33 131 5.67e-16 71.6
MS.gene049883.t1 AT3G55380 29.661 118 70 1 50 154 34 151 1.81e-15 70.1
MS.gene049883.t1 AT4G36410 32.773 119 70 4 9 123 4 116 2.95e-15 69.7
MS.gene049883.t1 AT5G42990 34.167 120 69 4 11 124 2 117 5.85e-15 68.9
MS.gene049883.t1 AT1G45050 35.043 117 72 3 11 124 2 117 6.44e-15 68.6
MS.gene049883.t1 AT2G46030 34.127 126 75 4 48 168 26 148 1.41e-14 68.2
MS.gene049883.t1 AT2G46030 34.127 126 75 4 48 168 26 148 1.41e-14 68.2
MS.gene049883.t1 AT2G46030 34.127 126 75 4 48 168 29 151 2.48e-14 67.8
MS.gene049883.t1 AT2G46030 34.127 126 75 4 48 168 29 151 2.48e-14 67.8
MS.gene049883.t1 AT2G46030 30.128 156 98 5 18 168 71 220 6.30e-14 67.8
MS.gene049883.t1 AT4G36800 31.387 137 86 5 7 138 15 148 1.93e-13 65.1
MS.gene049883.t1 AT4G36800 31.387 137 86 5 7 138 15 148 1.93e-13 65.1
MS.gene049883.t1 AT1G17280 26.772 127 86 1 22 141 5 131 3.84e-13 65.5
MS.gene049883.t1 AT5G41340 30.081 123 84 2 48 168 26 148 4.70e-13 64.3
MS.gene049883.t1 AT3G55380 30.769 104 59 1 50 140 34 137 1.04e-12 63.5
MS.gene049883.t1 AT1G63800 29.268 123 85 2 48 168 11 133 1.08e-12 63.2
MS.gene049883.t1 AT1G63800 29.268 123 85 2 48 168 26 148 1.09e-12 63.2
MS.gene049883.t1 AT2G18600 31.387 137 85 6 8 138 16 149 1.51e-12 62.8
MS.gene049883.t1 AT2G18600 31.387 137 85 6 8 138 16 149 1.51e-12 62.8
MS.gene049883.t1 AT5G41340 33.333 105 68 2 66 168 9 113 2.01e-12 62.0
MS.gene049883.t1 AT5G50430 27.907 129 76 3 22 141 5 125 5.67e-12 62.4
MS.gene049883.t1 AT5G50430 27.907 129 76 3 22 141 5 125 5.67e-12 62.4
MS.gene049883.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene049883.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene049883.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene049883.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene049883.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene049883.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene049883.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene049883.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene049883.t1 AT3G15355 32.558 129 67 4 24 137 334 457 1.30e-11 62.4
MS.gene049883.t1 AT1G53025 31.250 128 68 4 25 137 274 396 3.83e-11 60.8
MS.gene049883.t1 AT3G46460 34.146 82 41 1 67 135 8 89 4.36e-11 57.8
MS.gene049883.t1 AT3G46460 34.146 82 41 1 67 135 8 89 4.36e-11 57.8
MS.gene049883.t1 AT1G53025 31.250 128 68 4 25 137 274 396 5.02e-11 60.5

Find 55 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTGCTCACTTATATT+TGG 0.167783 4.4:+14295756 MS.gene049883:CDS
CACTGGATCGCCACCATTAT+TGG 0.225414 4.4:+14292348 MS.gene049883:CDS
ACCTGATGGCCGTGTTAGTA+TGG 0.244162 4.4:+14295021 MS.gene049883:CDS
GGCATTGCTCACTTATATTT+GGG 0.312742 4.4:+14295757 MS.gene049883:CDS
ACAACCTCAGTGTCTGCTTC+TGG 0.313526 4.4:+14292240 MS.gene049883:CDS
GCAGACAATGCTGTTGTTCC+TGG 0.324492 4.4:+14295736 MS.gene049883:intron
CCTCCTCCTCATTGTTCTGC+TGG 0.384460 4.4:+14292303 MS.gene049883:CDS
TGAACCTGGGGTGCCAATAA+TGG 0.405631 4.4:-14292361 None:intergenic
ATATTATTCACTTGGCGAAT+CGG 0.441674 4.4:-14295822 None:intergenic
TCATTGTTCTGCTGGTCCCA+AGG 0.444109 4.4:+14292311 MS.gene049883:CDS
CTTATATCATATTATTCACT+TGG 0.451971 4.4:-14295830 None:intergenic
AAAGAGAATTCAAAGAGAAA+TGG 0.471148 4.4:+14292263 MS.gene049883:CDS
TGGGAATATTGAAGGATGGT+TGG 0.488902 4.4:+14295041 MS.gene049883:CDS
CCCATACTAACACGGCCATC+AGG 0.491401 4.4:-14295022 None:intergenic
GAACTTCTTCCTCCTCCACC+TGG 0.495695 4.4:-14292198 None:intergenic
CATTGTTCTGCTGGTCCCAA+GGG 0.498720 4.4:+14292312 MS.gene049883:CDS
ATTGAAGGATGGTTGGAGTC+CGG 0.503896 4.4:+14295048 MS.gene049883:CDS
GTGATAGAGATTATCACCCT+TGG 0.504556 4.4:-14292328 None:intergenic
AGTACCTGGGGAGGCTTGAA+AGG 0.507084 4.4:-14292520 None:intergenic
AAGAATATGCCACCTTGGTA+AGG 0.510733 4.4:-14292469 None:intergenic
GCCACCATTATTGGCACCCC+AGG 0.511138 4.4:+14292357 MS.gene049883:CDS
TAGACAAACTTACAAGGGTC+GGG 0.513888 4.4:-14295121 None:intergenic
TGTTAGTATGGGAATATTGA+AGG 0.515562 4.4:+14295033 MS.gene049883:CDS
TGATAGAGATTATCACCCTT+GGG 0.525358 4.4:-14292327 None:intergenic
ACCTTAGTAATTGTTAGTGC+CGG 0.526027 4.4:-14295067 None:intergenic
CTATCCTTTCAAGCCTCCCC+AGG 0.527880 4.4:+14292516 MS.gene049883:CDS
GAAGAAGTTCAACATCATCA+TGG 0.530685 4.4:+14292211 MS.gene049883:CDS
CCAGCAGAACAATGAGGAGG+AGG 0.534364 4.4:-14292303 None:intergenic
AAATATAAGTGAGCAATGCC+AGG 0.535276 4.4:-14295754 None:intergenic
ATAGACAAACTTACAAGGGT+CGG 0.537656 4.4:-14295122 None:intergenic
AGGGTGATAATCTCTATCAC+TGG 0.546775 4.4:+14292331 MS.gene049883:CDS
GTGATGATACCAGGTGGAGG+AGG 0.546811 4.4:+14292189 None:intergenic
CCTGATGGCCGTGTTAGTAT+GGG 0.550021 4.4:+14295022 MS.gene049883:CDS
TCCGGCACTAACAATTACTA+AGG 0.562618 4.4:+14295066 MS.gene049883:CDS
GAAGCAGACACTGAGGTTGT+CGG 0.570928 4.4:-14292237 None:intergenic
ATGATGATATTGCTGCAGAA+TGG 0.574575 4.4:+14295794 MS.gene049883:CDS
CAAGGAAGAATATGCCACCT+TGG 0.575948 4.4:-14292474 None:intergenic
AAGAAGTTCAACATCATCAT+GGG 0.593129 4.4:+14292212 MS.gene049883:CDS
AGTATGGGAATATTGAAGGA+TGG 0.608029 4.4:+14295037 MS.gene049883:CDS
GGAGGTGAAGTGATGATACC+AGG 0.617355 4.4:+14292180 None:intergenic
CAGTAGGAAATATTATGTCA+AGG 0.623127 4.4:-14292492 None:intergenic
AATACCAATAGTACCTGGGG+AGG 0.638913 4.4:-14292529 None:intergenic
CACTGCAACGTAGAACCTGA+TGG 0.643178 4.4:+14295007 MS.gene049883:CDS
GAAGTGATGATACCAGGTGG+AGG 0.643516 4.4:+14292186 None:intergenic
CAGCAGAACAATGAGGAGGA+GGG 0.654094 4.4:-14292302 None:intergenic
CATCAGGTTCTACGTTGCAG+TGG 0.655107 4.4:-14295006 None:intergenic
TTTGTAGGAACACCTTACCA+AGG 0.659022 4.4:+14292457 MS.gene049883:intron
GGCTTGAAAGGATAGTCAGT+AGG 0.660032 4.4:-14292508 None:intergenic
CTTTCCAGAAGCAGACACTG+AGG 0.663553 4.4:-14292244 None:intergenic
TCAATATTCCCATACTAACA+CGG 0.686088 4.4:-14295030 None:intergenic
ACCTGGGGTGCCAATAATGG+TGG 0.689217 4.4:-14292358 None:intergenic
GGACCAGCAGAACAATGAGG+AGG 0.696711 4.4:-14292306 None:intergenic
GTAGGAACACCTTACCAAGG+TGG 0.698581 4.4:+14292460 MS.gene049883:intron
TTGGGACCAGCAGAACAATG+AGG 0.713885 4.4:-14292309 None:intergenic
GGTGAAGTGATGATACCAGG+TGG 0.731443 4.4:+14292183 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGGTTTAAAAAATAAAA+AGG + chr4.4:14294878-14294897 MS.gene049883:intron 10.0%
!! AATTCTATATACATTTAGTT+TGG + chr4.4:14292888-14292907 MS.gene049883:intron 15.0%
!! TACAAACAAAATGTAAATAT+TGG - chr4.4:14295622-14295641 None:intergenic 15.0%
!! TCAAGTAGAATTTAATAAAT+TGG + chr4.4:14294304-14294323 MS.gene049883:intron 15.0%
!! TTGAAAATAATCTTACAAAA+GGG + chr4.4:14295367-14295386 MS.gene049883:intron 15.0%
!! TTTGAAAATAATCTTACAAA+AGG + chr4.4:14295366-14295385 MS.gene049883:intron 15.0%
!! AATACATACCCTAAATTAAA+TGG - chr4.4:14295316-14295335 None:intergenic 20.0%
!! ATACATACCCTAAATTAAAT+GGG - chr4.4:14295315-14295334 None:intergenic 20.0%
!! TACTTGAAGAATTACATAAT+GGG - chr4.4:14294772-14294791 None:intergenic 20.0%
!! TTAAAAGACATAATCATTAG+CGG - chr4.4:14295557-14295576 None:intergenic 20.0%
!! TTATCTCTCTTAATAATTGA+TGG - chr4.4:14295272-14295291 None:intergenic 20.0%
!!! ATAGTATCGAAAAGATAAAA+TGG - chr4.4:14294656-14294675 None:intergenic 20.0%
!!! CATTTTATACAAATACTGAT+AGG - chr4.4:14294710-14294729 None:intergenic 20.0%
!!! CTAATATTGACTGAAAAAAA+AGG + chr4.4:14294147-14294166 MS.gene049883:intron 20.0%
!!! GTAAAATAATTTTATACCGA+CGG - chr4.4:14292661-14292680 None:intergenic 20.0%
!!! TAATTTCCCCATTTAATTTA+GGG + chr4.4:14295305-14295324 MS.gene049883:intron 20.0%
!!! TATATACATTTAGTTTGGTA+AGG + chr4.4:14292893-14292912 MS.gene049883:intron 20.0%
!!! TTAATTTCCCCATTTAATTT+AGG + chr4.4:14295304-14295323 MS.gene049883:intron 20.0%
!!! TTATAGGCTTTGAAAATAAA+GGG - chr4.4:14294799-14294818 None:intergenic 20.0%
!!! TTTATAGGCTTTGAAAATAA+AGG - chr4.4:14294800-14294819 None:intergenic 20.0%
! AAACACAGTAGAATTAAATG+AGG + chr4.4:14293566-14293585 MS.gene049883:intron 25.0%
! AAAGAGAATTCAAAGAGAAA+TGG + chr4.4:14292263-14292282 MS.gene049883:CDS 25.0%
! AATAGTTCACTTTATCAATC+TGG - chr4.4:14293285-14293304 None:intergenic 25.0%
! ACTAAAGAGATCTTAGATAT+AGG - chr4.4:14295176-14295195 None:intergenic 25.0%
! AGTAATAAGCATTAACTTCA+AGG - chr4.4:14292851-14292870 None:intergenic 25.0%
! ATAGAAAGGAAAAATAGCAA+AGG - chr4.4:14294616-14294635 None:intergenic 25.0%
! ATTACAAGATATTTAGTCAC+TGG + chr4.4:14294010-14294029 MS.gene049883:intron 25.0%
! CAGACAACAAAAAATTTATG+GGG + chr4.4:14294908-14294927 MS.gene049883:intron 25.0%
! CTAAAGAGATCTTAGATATA+GGG - chr4.4:14295175-14295194 None:intergenic 25.0%
! GCAGACAACAAAAAATTTAT+GGG + chr4.4:14294907-14294926 MS.gene049883:intron 25.0%
! GGATTTCATTAATGATAGAA+AGG - chr4.4:14294630-14294649 None:intergenic 25.0%
! GGGAAAAGAAAAATTTACAA+AGG + chr4.4:14295387-14295406 MS.gene049883:intron 25.0%
! GTACTTGAAGAATTACATAA+TGG - chr4.4:14294773-14294792 None:intergenic 25.0%
! TACATACCCTAAATTAAATG+GGG - chr4.4:14295314-14295333 None:intergenic 25.0%
! TCAAGAATGAATGTAATCAT+GGG + chr4.4:14293145-14293164 MS.gene049883:intron 25.0%
! TCAATAAAACTATCAAGTGT+TGG - chr4.4:14293056-14293075 None:intergenic 25.0%
! TGAAAAAAAAGGTTATTCAC+TGG + chr4.4:14294158-14294177 MS.gene049883:intron 25.0%
! TGCAGACAACAAAAAATTTA+TGG + chr4.4:14294906-14294925 MS.gene049883:intron 25.0%
! TTACAAGATATTTAGTCACT+GGG + chr4.4:14294011-14294030 MS.gene049883:intron 25.0%
!! ATGATTATGTCTTTTAACAC+TGG + chr4.4:14295560-14295579 MS.gene049883:intron 25.0%
!! GTCAGAAAAAGAATTCTTTT+AGG + chr4.4:14294524-14294543 MS.gene049883:intron 25.0%
!! TCATTTTCCCTGAATATTTT+TGG - chr4.4:14293767-14293786 None:intergenic 25.0%
!! TTTGCTTCTGATTTGATATA+GGG + chr4.4:14294199-14294218 MS.gene049883:intron 25.0%
!!! AATCCTTCTCTTTTTCATAA+AGG + chr4.4:14293382-14293401 MS.gene049883:intron 25.0%
!!! ATCCTTCTCTTTTTCATAAA+GGG + chr4.4:14293383-14293402 MS.gene049883:intron 25.0%
!!! ATTGTTTCTTTTTCTCAAGT+TGG + chr4.4:14292561-14292580 MS.gene049883:intron 25.0%
!!! TTTTGCTTCTGATTTGATAT+AGG + chr4.4:14294198-14294217 MS.gene049883:intron 25.0%
!!! TTTTTTTTGAAGAAGCTACT+TGG - chr4.4:14295682-14295701 None:intergenic 25.0%
AAAAAGCAGCATGGTTTAAT+AGG + chr4.4:14295526-14295545 MS.gene049883:intron 30.0%
AAAAATACCAATAGTACCTG+GGG - chr4.4:14292535-14292554 None:intergenic 30.0%
AAGAAGTTCAACATCATCAT+GGG + chr4.4:14292212-14292231 MS.gene049883:CDS 30.0%
AATAGGAACAAACAGGAAAA+TGG + chr4.4:14293104-14293123 MS.gene049883:intron 30.0%
ACAAAGGAGTCTTACATATA+GGG + chr4.4:14295403-14295422 MS.gene049883:intron 30.0%
ACAACAAAAAATTTATGGGG+AGG + chr4.4:14294911-14294930 MS.gene049883:intron 30.0%
ACTTCTGTTATATTGGGATT+GGG + chr4.4:14294486-14294505 MS.gene049883:intron 30.0%
AGAGAATAGACAAACTTACA+AGG - chr4.4:14295130-14295149 None:intergenic 30.0%
ATAATTCTTAAAGGCAAGAC+TGG + chr4.4:14293237-14293256 MS.gene049883:intron 30.0%
ATCCCTTTATGAAAAAGAGA+AGG - chr4.4:14293388-14293407 None:intergenic 30.0%
ATCGAAAAGATAAAATGGAG+AGG - chr4.4:14294651-14294670 None:intergenic 30.0%
ATTGTTTATTGCTTCGAAAG+TGG - chr4.4:14294105-14294124 None:intergenic 30.0%
ATTTAATCTTTATGCTCCGT+CGG + chr4.4:14292642-14292661 MS.gene049883:intron 30.0%
CAAAAATACCAATAGTACCT+GGG - chr4.4:14292536-14292555 None:intergenic 30.0%
CAGTAGGAAATATTATGTCA+AGG - chr4.4:14292495-14292514 None:intergenic 30.0%
GAAGAAAACAAAGAAGGTAA+GGG + chr4.4:14293653-14293672 MS.gene049883:intron 30.0%
GAGAATAGACAAACTTACAA+GGG - chr4.4:14295129-14295148 None:intergenic 30.0%
GCTCAAGTCATAATTCTTAA+AGG + chr4.4:14293228-14293247 MS.gene049883:intron 30.0%
GTCAAGAATGAATGTAATCA+TGG + chr4.4:14293144-14293163 MS.gene049883:intron 30.0%
TAAGCAAAATAGGAACAAAC+AGG + chr4.4:14293097-14293116 MS.gene049883:intron 30.0%
TACAAAGGAGTCTTACATAT+AGG + chr4.4:14295402-14295421 MS.gene049883:intron 30.0%
TCAATATTCCCATACTAACA+CGG - chr4.4:14295033-14295052 None:intergenic 30.0%
TGAAGACTAGAAAGTAGTTT+AGG + chr4.4:14293492-14293511 MS.gene049883:intron 30.0%
TGAATTGATACTTAAGCCAT+AGG + chr4.4:14292970-14292989 MS.gene049883:intron 30.0%
TGACTCACTTCTGTTATATT+GGG + chr4.4:14294480-14294499 MS.gene049883:intron 30.0%
TGCTATTGACAACATAGATA+GGG + chr4.4:14293970-14293989 MS.gene049883:intron 30.0%
TGTTAGTATGGGAATATTGA+AGG + chr4.4:14295033-14295052 MS.gene049883:CDS 30.0%
TTGTTTATTGCTTCGAAAGT+GGG - chr4.4:14294104-14294123 None:intergenic 30.0%
! CATTTTCCAAGAATTATGCT+TGG - chr4.4:14293345-14293364 None:intergenic 30.0%
! TGAAGAATTACATAATGGGA+AGG - chr4.4:14294768-14294787 None:intergenic 30.0%
! TTCAAGATCATGTCATTTGA+AGG + chr4.4:14294246-14294265 MS.gene049883:intron 30.0%
! TTTCTGGAAGAAAACAAAGA+AGG + chr4.4:14293647-14293666 MS.gene049883:intron 30.0%
!! AGGTACTATTGGTATTTTTG+CGG + chr4.4:14292536-14292555 MS.gene049883:intron 30.0%
!! TCTCTTTTTCATAAAGGGAT+TGG + chr4.4:14293388-14293407 MS.gene049883:intron 30.0%
!!! TCTTTGTTTTCTTCCAGAAA+TGG - chr4.4:14293647-14293666 None:intergenic 30.0%
AAAGTGGGATAGTAGATAGA+GGG + chr4.4:14293456-14293475 MS.gene049883:intron 35.0%
AAATATAAGTGAGCAATGCC+AGG - chr4.4:14295757-14295776 None:intergenic 35.0%
AAATGGCTACCTATACCAAA+AGG + chr4.4:14293121-14293140 MS.gene049883:intron 35.0%
AAGTGAGTTTCACTTTCACA+TGG + chr4.4:14293718-14293737 MS.gene049883:intron 35.0%
AATGGCTACCTATACCAAAA+GGG + chr4.4:14293122-14293141 MS.gene049883:intron 35.0%
ACATGCTACAGGAAGTTTAT+AGG - chr4.4:14294815-14294834 None:intergenic 35.0%
ACCAAAAAGCCGAATAAATC+TGG + chr4.4:14293786-14293805 MS.gene049883:intron 35.0%
ACCTTAGTAATTGTTAGTGC+CGG - chr4.4:14295070-14295089 None:intergenic 35.0%
ACTTCTCTGTTTGAAGAGTT+TGG + chr4.4:14294855-14294874 MS.gene049883:intron 35.0%
AGAATGAATGTAATCATGGG+TGG + chr4.4:14293148-14293167 MS.gene049883:intron 35.0%
AGAGCTAGAAATGAGAGTTT+AGG + chr4.4:14294342-14294361 MS.gene049883:intron 35.0%
AGTATGGGAATATTGAAGGA+TGG + chr4.4:14295037-14295056 MS.gene049883:CDS 35.0%
AGTCTTACATATAGGGATGA+AGG + chr4.4:14295410-14295429 MS.gene049883:intron 35.0%
ATAGACAAACTTACAAGGGT+CGG - chr4.4:14295125-14295144 None:intergenic 35.0%
ATGATGATATTGCTGCAGAA+TGG + chr4.4:14295794-14295813 MS.gene049883:CDS 35.0%
CAACATAGATAGGGATAGTA+TGG + chr4.4:14293979-14293998 MS.gene049883:intron 35.0%
CACTTCTGTTATATTGGGAT+TGG + chr4.4:14294485-14294504 MS.gene049883:intron 35.0%
CCTGCTAGTTCAATTTAACA+AGG - chr4.4:14294964-14294983 None:intergenic 35.0%
CCTTGTTAAATTGAACTAGC+AGG + chr4.4:14294961-14294980 MS.gene049883:intron 35.0%
CTATCTATGTTGTCAATAGC+AGG - chr4.4:14293971-14293990 None:intergenic 35.0%
CTGCTATTGACAACATAGAT+AGG + chr4.4:14293969-14293988 MS.gene049883:intron 35.0%
CTGCTGACCAAAAATATTCA+GGG + chr4.4:14293757-14293776 MS.gene049883:intron 35.0%
CTGTTTGAAGAGTTTGGTAT+AGG + chr4.4:14294861-14294880 MS.gene049883:intron 35.0%
CTTCTGTTATATTGGGATTG+GGG + chr4.4:14294487-14294506 MS.gene049883:intron 35.0%
GAAGAAGTTCAACATCATCA+TGG + chr4.4:14292211-14292230 MS.gene049883:CDS 35.0%
GACTAGAAAGTAGTTTAGGA+AGG + chr4.4:14293496-14293515 MS.gene049883:intron 35.0%
GATCTTAGATATAGGGACAA+AGG - chr4.4:14295168-14295187 None:intergenic 35.0%
GCAAAAATACCAATAGTACC+TGG - chr4.4:14292537-14292556 None:intergenic 35.0%
GGAAGAAAACAAAGAAGGTA+AGG + chr4.4:14293652-14293671 MS.gene049883:intron 35.0%
GGCATTGCTCACTTATATTT+GGG + chr4.4:14295757-14295776 MS.gene049883:CDS 35.0%
GTAGGATAGGTAAGCAAAAT+AGG + chr4.4:14293087-14293106 MS.gene049883:intron 35.0%
GTGACTCACTTCTGTTATAT+TGG + chr4.4:14294479-14294498 MS.gene049883:intron 35.0%
TAAAACCTAGTAGCCATTTC+TGG + chr4.4:14293631-14293650 MS.gene049883:intron 35.0%
TAAAGTGGGATAGTAGATAG+AGG + chr4.4:14293455-14293474 MS.gene049883:intron 35.0%
TATAGGGATGAAGGTTTACA+TGG + chr4.4:14295419-14295438 MS.gene049883:intron 35.0%
TGATAGAGATTATCACCCTT+GGG - chr4.4:14292330-14292349 None:intergenic 35.0%
TGGCATTGCTCACTTATATT+TGG + chr4.4:14295756-14295775 MS.gene049883:CDS 35.0%
TTAACGCGAGAACACATTAT+TGG + chr4.4:14292750-14292769 MS.gene049883:intron 35.0%
TTACAGCTGATATGTCACAT+TGG - chr4.4:14293904-14293923 None:intergenic 35.0%
TTATGGTTGAGATGATACCA+GGG + chr4.4:14293535-14293554 MS.gene049883:intron 35.0%
TTCTTGCATTCAGAAGCAAA+AGG - chr4.4:14295462-14295481 None:intergenic 35.0%
TTGATATAGGGAAAGTTCAC+TGG + chr4.4:14294211-14294230 MS.gene049883:intron 35.0%
TTTATGGTTGAGATGATACC+AGG + chr4.4:14293534-14293553 MS.gene049883:intron 35.0%
! AAATATGGAGAGTGTATGCT+AGG + chr4.4:14294403-14294422 MS.gene049883:intron 35.0%
! ACATTCATTCTTGACCCTTT+TGG - chr4.4:14293139-14293158 None:intergenic 35.0%
! ACCAGATTTATTCGGCTTTT+TGG - chr4.4:14293790-14293809 None:intergenic 35.0%
! AGCATACACTCTCCATATTT+TGG - chr4.4:14294403-14294422 None:intergenic 35.0%
! ATTCTTGACCCTTTTGGTAT+AGG - chr4.4:14293133-14293152 None:intergenic 35.0%
! CTTTCTAGTCTTCACAATAG+AGG - chr4.4:14293486-14293505 None:intergenic 35.0%
! GAAATGGCTACTAGGTTTTA+TGG - chr4.4:14293631-14293650 None:intergenic 35.0%
! GCATACACTCTCCATATTTT+GGG - chr4.4:14294402-14294421 None:intergenic 35.0%
! TTTTGCTTACCTATCCTACT+CGG - chr4.4:14293086-14293105 None:intergenic 35.0%
!! ATTGGTGTTGTTAATCCTAG+TGG + chr4.4:14293406-14293425 MS.gene049883:intron 35.0%
!! ATTTAGTTTGGTAAGGCGAT+GGG + chr4.4:14292900-14292919 MS.gene049883:intron 35.0%
!! TTCTCTAGCTTTACTCAATG+TGG - chr4.4:14292950-14292969 None:intergenic 35.0%
!! TTTGGGATGGTTTTACTTGT+GGG + chr4.4:14293206-14293225 MS.gene049883:intron 35.0%
!!! CAACTCATGGTTAGTCTTTT+GGG + chr4.4:14293189-14293208 MS.gene049883:intron 35.0%
!!! TCAACTCATGGTTAGTCTTT+TGG + chr4.4:14293188-14293207 MS.gene049883:intron 35.0%
!!! TTTTGGGATGGTTTTACTTG+TGG + chr4.4:14293205-14293224 MS.gene049883:intron 35.0%
AAATGAGGAACAGAGAACAG+AGG + chr4.4:14293581-14293600 MS.gene049883:intron 40.0%
AAGAATATGCCACCTTGGTA+AGG - chr4.4:14292472-14292491 None:intergenic 40.0%
AATGATGAGCTGGCAGAAAA+GGG + chr4.4:14294447-14294466 MS.gene049883:intron 40.0%
AGGGTGATAATCTCTATCAC+TGG + chr4.4:14292331-14292350 MS.gene049883:CDS 40.0%
AGTTTAGGAAGGCTTCACTT+TGG + chr4.4:14293507-14293526 MS.gene049883:intron 40.0%
ATCCCACTTTAGCAGTTTAG+AGG - chr4.4:14293446-14293465 None:intergenic 40.0%
CAAGATATTTAGTCACTGGG+TGG + chr4.4:14294014-14294033 MS.gene049883:intron 40.0%
CACACCATGTACCCAAAATA+TGG + chr4.4:14294388-14294407 MS.gene049883:intron 40.0%
CATGTCTTGAAAAAGCAGCA+TGG + chr4.4:14295517-14295536 MS.gene049883:intron 40.0%
CCCTGTTCACCAGATTTATT+CGG - chr4.4:14293798-14293817 None:intergenic 40.0%
CCGAATAAATCTGGTGAACA+GGG + chr4.4:14293795-14293814 MS.gene049883:intron 40.0%
CGAATAAATCTGGTGAACAG+GGG + chr4.4:14293796-14293815 MS.gene049883:intron 40.0%
GAAGAAGCTACTTGGAGTAT+CGG - chr4.4:14295674-14295693 None:intergenic 40.0%
GAATAAATCTGGTGAACAGG+GGG + chr4.4:14293797-14293816 MS.gene049883:intron 40.0%
GACCTCTAAACTGCTAAAGT+GGG + chr4.4:14293441-14293460 MS.gene049883:intron 40.0%
GCTGCTGACCAAAAATATTC+AGG + chr4.4:14293756-14293775 MS.gene049883:intron 40.0%
GCTTCTGAATGCAAGAAAAG+AGG + chr4.4:14295465-14295484 MS.gene049883:intron 40.0%
GGGATACCAAGCATAATTCT+TGG + chr4.4:14293336-14293355 MS.gene049883:intron 40.0%
GTCATTTGAAGGAGCTAACT+GGG + chr4.4:14294257-14294276 MS.gene049883:intron 40.0%
GTCTTCGGATCATCACAAAA+CGG + chr4.4:14293685-14293704 MS.gene049883:intron 40.0%
GTGATAGAGATTATCACCCT+TGG - chr4.4:14292331-14292350 None:intergenic 40.0%
GTTTAGGAAGGCTTCACTTT+GGG + chr4.4:14293508-14293527 MS.gene049883:intron 40.0%
TAGACAAACTTACAAGGGTC+GGG - chr4.4:14295124-14295143 None:intergenic 40.0%
TCCGGCACTAACAATTACTA+AGG + chr4.4:14295066-14295085 MS.gene049883:CDS 40.0%
TCTTCGGATCATCACAAAAC+GGG + chr4.4:14293686-14293705 MS.gene049883:intron 40.0%
TGACCTCTAAACTGCTAAAG+TGG + chr4.4:14293440-14293459 MS.gene049883:intron 40.0%
TGGGAATATTGAAGGATGGT+TGG + chr4.4:14295041-14295060 MS.gene049883:CDS 40.0%
TGTTGTTAATCCTAGTGGTG+GGG + chr4.4:14293411-14293430 MS.gene049883:intron 40.0%
TTATATTGGGATTGGGGTAG+TGG + chr4.4:14294493-14294512 MS.gene049883:intron 40.0%
TTCTTCCAGAAATGGCTACT+AGG - chr4.4:14293639-14293658 None:intergenic 40.0%
TTTGTAGGAACACCTTACCA+AGG + chr4.4:14292457-14292476 MS.gene049883:intron 40.0%
! ACCATTCAGCTTAGGTTGTT+TGG + chr4.4:14292392-14292411 MS.gene049883:intron 40.0%
! CCATTCAGCTTAGGTTGTTT+GGG + chr4.4:14292393-14292412 MS.gene049883:intron 40.0%
! GCTTCACTTTGGGAAGTTTA+TGG + chr4.4:14293518-14293537 MS.gene049883:intron 40.0%
! GTGTTGTTAATCCTAGTGGT+GGG + chr4.4:14293410-14293429 MS.gene049883:intron 40.0%
! TGTCATTTGAAGGAGCTAAC+TGG + chr4.4:14294256-14294275 MS.gene049883:intron 40.0%
!! CATATTTTGGGTACATGGTG+TGG - chr4.4:14294390-14294409 None:intergenic 40.0%
!! CATTTAGTTTGGTAAGGCGA+TGG + chr4.4:14292899-14292918 MS.gene049883:intron 40.0%
!! CTCTCCATATTTTGGGTACA+TGG - chr4.4:14294395-14294414 None:intergenic 40.0%
!! GCTACTAGGTTTTATGGTAG+TGG - chr4.4:14293625-14293644 None:intergenic 40.0%
!! GTAACAGTGATTTGCTCAGA+AGG - chr4.4:14294746-14294765 None:intergenic 40.0%
!! TCTCAAGTTGGTGTTTGCTT+TGG + chr4.4:14292573-14292592 MS.gene049883:intron 40.0%
!!! CATGCTGCTTTTTCAAGACA+TGG - chr4.4:14295519-14295538 None:intergenic 40.0%
!!! TCATGGTTAGTCTTTTGGGA+TGG + chr4.4:14293193-14293212 MS.gene049883:intron 40.0%
!!! TTTTTCAAGACATGGAGGAC+TGG - chr4.4:14295511-14295530 None:intergenic 40.0%
AAAGGACAAGCCTATTGGGT+GGG - chr4.4:14293001-14293020 None:intergenic 45.0%
AAGGAGCTAACTGGGTCAAT+GGG + chr4.4:14294265-14294284 MS.gene049883:intron 45.0%
AATACCAATAGTACCTGGGG+AGG - chr4.4:14292532-14292551 None:intergenic 45.0%
AATGGTGAAGATGGTGAACC+TGG - chr4.4:14292378-14292397 None:intergenic 45.0%
ACCCAATAGGCTTGTCCTTT+GGG + chr4.4:14293001-14293020 MS.gene049883:intron 45.0%
ACTGGAGTAACATCCTCCTA+GGG + chr4.4:14293255-14293274 MS.gene049883:intron 45.0%
ATAGGATTCTCCCACCCAAT+AGG + chr4.4:14292988-14293007 MS.gene049883:intron 45.0%
ATCCCAAAGGACAAGCCTAT+TGG - chr4.4:14293006-14293025 None:intergenic 45.0%
ATGATGAGCTGGCAGAAAAG+GGG + chr4.4:14294448-14294467 MS.gene049883:intron 45.0%
ATGGTGAAGATGGTGAACCT+GGG - chr4.4:14292377-14292396 None:intergenic 45.0%
ATTGAAGGATGGTTGGAGTC+CGG + chr4.4:14295048-14295067 MS.gene049883:CDS 45.0%
CAAGGAAGAATATGCCACCT+TGG - chr4.4:14292477-14292496 None:intergenic 45.0%
CACTTTCACATGGTGCAGAA+CGG + chr4.4:14293728-14293747 MS.gene049883:intron 45.0%
CAGAATGCTCTCTCAACTCA+TGG + chr4.4:14293176-14293195 MS.gene049883:intron 45.0%
CAGGTGATCACACGTGATAA+TGG - chr4.4:14293952-14293971 None:intergenic 45.0%
CCATCTTCACCATTCAGCTT+AGG + chr4.4:14292384-14292403 MS.gene049883:intron 45.0%
CCCAAACAACCTAAGCTGAA+TGG - chr4.4:14292396-14292415 None:intergenic 45.0%
CCTAAGCTGAATGGTGAAGA+TGG - chr4.4:14292387-14292406 None:intergenic 45.0%
CTTCGGATCATCACAAAACG+GGG + chr4.4:14293687-14293706 MS.gene049883:intron 45.0%
GAATGATGAGCTGGCAGAAA+AGG + chr4.4:14294446-14294465 MS.gene049883:intron 45.0%
GCAAGAAGAGAATGATGAGC+TGG + chr4.4:14294437-14294456 MS.gene049883:intron 45.0%
GCCGAATAAATCTGGTGAAC+AGG + chr4.4:14293794-14293813 MS.gene049883:intron 45.0%
GGCTTGAAAGGATAGTCAGT+AGG - chr4.4:14292511-14292530 None:intergenic 45.0%
GTTATGCTTCACCCCTTCTA+TGG + chr4.4:14293310-14293329 MS.gene049883:intron 45.0%
GTTGAGAGAAGACATGCTAC+AGG - chr4.4:14294826-14294845 None:intergenic 45.0%
TAAGGGAGCAAGTGAGTCTT+CGG + chr4.4:14293670-14293689 MS.gene049883:intron 45.0%
TAGAGAAGAGTCCATCCCAA+AGG - chr4.4:14293019-14293038 None:intergenic 45.0%
TATTGGGTGGGAGAATCCTA+TGG - chr4.4:14292989-14293008 None:intergenic 45.0%
TCCCAAAGGACAAGCCTATT+GGG - chr4.4:14293005-14293024 None:intergenic 45.0%
TGGTATCCCCATCCATAGAA+GGG - chr4.4:14293325-14293344 None:intergenic 45.0%
TTATTGAGAGCTTGCCGAGT+AGG + chr4.4:14293069-14293088 MS.gene049883:intron 45.0%
TTGGTATCCCCATCCATAGA+AGG - chr4.4:14293326-14293345 None:intergenic 45.0%
! AATAGGCTTGTCCTTTGGGA+TGG + chr4.4:14293005-14293024 MS.gene049883:intron 45.0%
! ACTGTGTTTCTACTCAACCC+TGG - chr4.4:14293555-14293574 None:intergenic 45.0%
! GGAGAGTGGACTCAAATAAG+AGG - chr4.4:14294083-14294102 None:intergenic 45.0%
! TTATCAATCTGGCTTCCCCT+AGG - chr4.4:14293274-14293293 None:intergenic 45.0%
! TTGGTGTTTGCTTTGGCATG+TGG + chr4.4:14292580-14292599 MS.gene049883:intron 45.0%
!! AAAGGGGCATTTGGCATCAA+AGG + chr4.4:14293822-14293841 MS.gene049883:intron 45.0%
!! CATGAGTTGAGAGAGCATTC+TGG - chr4.4:14293178-14293197 None:intergenic 45.0%
!! GGTGTTGTTAATCCTAGTGG+TGG + chr4.4:14293409-14293428 MS.gene049883:intron 45.0%
!!! GCTGCTTTTTCAAGACATGG+AGG - chr4.4:14295516-14295535 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTGT+AGG + chr4.4:14292442-14292461 MS.gene049883:intron 5.0%
ACAACCTCAGTGTCTGCTTC+TGG + chr4.4:14292240-14292259 MS.gene049883:CDS 50.0%
ACAGAGAACAGAGGAGAACC+CGG + chr4.4:14293590-14293609 MS.gene049883:intron 50.0%
ACCTGATGGCCGTGTTAGTA+TGG + chr4.4:14295021-14295040 MS.gene049883:CDS 50.0%
CAAAGGACAAGCCTATTGGG+TGG - chr4.4:14293002-14293021 None:intergenic 50.0%
CACCCAATAGGCTTGTCCTT+TGG + chr4.4:14293000-14293019 MS.gene049883:intron 50.0%
CACTGCAACGTAGAACCTGA+TGG + chr4.4:14295007-14295026 MS.gene049883:CDS 50.0%
CACTGGATCGCCACCATTAT+TGG + chr4.4:14292348-14292367 MS.gene049883:CDS 50.0%
CAGCAGAACAATGAGGAGGA+GGG - chr4.4:14292305-14292324 None:intergenic 50.0%
CATCAGGTTCTACGTTGCAG+TGG - chr4.4:14295009-14295028 None:intergenic 50.0%
CATTGTTCTGCTGGTCCCAA+GGG + chr4.4:14292312-14292331 MS.gene049883:CDS 50.0%
CCTGATGGCCGTGTTAGTAT+GGG + chr4.4:14295022-14295041 MS.gene049883:CDS 50.0%
CTGGAGTAACATCCTCCTAG+GGG + chr4.4:14293256-14293275 MS.gene049883:intron 50.0%
CTTCACCCCTTCTATGGATG+GGG + chr4.4:14293316-14293335 MS.gene049883:intron 50.0%
CTTTCCAGAAGCAGACACTG+AGG - chr4.4:14292247-14292266 None:intergenic 50.0%
GAAGCAGACACTGAGGTTGT+CGG - chr4.4:14292240-14292259 None:intergenic 50.0%
GAAGGAGCTAACTGGGTCAA+TGG + chr4.4:14294264-14294283 MS.gene049883:intron 50.0%
GACTGGAGTAACATCCTCCT+AGG + chr4.4:14293254-14293273 MS.gene049883:intron 50.0%
GATCATCACAAAACGGGGTC+AGG + chr4.4:14293692-14293711 MS.gene049883:intron 50.0%
GCAGACAATGCTGTTGTTCC+TGG + chr4.4:14295736-14295755 MS.gene049883:intron 50.0%
GCATAGCTCTCAGCTGTATC+AGG + chr4.4:14294580-14294599 MS.gene049883:intron 50.0%
GCTTCACCCCTTCTATGGAT+GGG + chr4.4:14293315-14293334 MS.gene049883:intron 50.0%
GGTATCCCCATCCATAGAAG+GGG - chr4.4:14293324-14293343 None:intergenic 50.0%
GTAGGAACACCTTACCAAGG+TGG + chr4.4:14292460-14292479 MS.gene049883:intron 50.0%
TCATTGTTCTGCTGGTCCCA+AGG + chr4.4:14292311-14292330 MS.gene049883:CDS 50.0%
TGCTTCACCCCTTCTATGGA+TGG + chr4.4:14293314-14293333 MS.gene049883:intron 50.0%
TGGTGAAGATGGTGAACCTG+GGG - chr4.4:14292376-14292395 None:intergenic 50.0%
TTCAAGACATGGAGGACTGG+AGG - chr4.4:14295508-14295527 None:intergenic 50.0%
TTGCTTCGAAAGTGGGAGAG+TGG - chr4.4:14294097-14294116 None:intergenic 50.0%
TTGGGACCAGCAGAACAATG+AGG - chr4.4:14292312-14292331 None:intergenic 50.0%
! TATTGGGATTGGGGTAGTGG+AGG + chr4.4:14294496-14294515 MS.gene049883:intron 50.0%
! TGAACCTGGGGTGCCAATAA+TGG - chr4.4:14292364-14292383 None:intergenic 50.0%
!! ATGGTAGTGGTGACGACTTC+CGG - chr4.4:14293612-14293631 None:intergenic 50.0%
AGTACCTGGGGAGGCTTGAA+AGG - chr4.4:14292523-14292542 None:intergenic 55.0%
CAAGCCTCCCCAGGTACTAT+TGG + chr4.4:14292525-14292544 MS.gene049883:intron 55.0%
CATCACAAAACGGGGTCAGG+AGG + chr4.4:14293695-14293714 MS.gene049883:intron 55.0%
CCAGCAGAACAATGAGGAGG+AGG - chr4.4:14292306-14292325 None:intergenic 55.0%
CCCATACTAACACGGCCATC+AGG - chr4.4:14295025-14295044 None:intergenic 55.0%
CCTCCTCCTCATTGTTCTGC+TGG + chr4.4:14292303-14292322 MS.gene049883:CDS 55.0%
CTATCCTTTCAAGCCTCCCC+AGG + chr4.4:14292516-14292535 MS.gene049883:CDS 55.0%
CTGGTGAACAGGGGGTGAAA+GGG + chr4.4:14293805-14293824 MS.gene049883:intron 55.0%
GAACTTCTTCCTCCTCCACC+TGG - chr4.4:14292201-14292220 None:intergenic 55.0%
GAGAGCTTGCCGAGTAGGAT+AGG + chr4.4:14293074-14293093 MS.gene049883:intron 55.0%
GGACCAGCAGAACAATGAGG+AGG - chr4.4:14292309-14292328 None:intergenic 55.0%
GGCATCAAAGGTGGCTGTTG+TGG + chr4.4:14293834-14293853 MS.gene049883:intron 55.0%
TCTGGTGAACAGGGGGTGAA+AGG + chr4.4:14293804-14293823 MS.gene049883:intron 55.0%
TGGTGAACAGGGGGTGAAAG+GGG + chr4.4:14293806-14293825 MS.gene049883:intron 55.0%
! ACCTGGGGTGCCAATAATGG+TGG - chr4.4:14292361-14292380 None:intergenic 55.0%
! GGGGCATTTGGCATCAAAGG+TGG + chr4.4:14293825-14293844 MS.gene049883:intron 55.0%
! GTTTGGTAAGGCGATGGGCT+TGG + chr4.4:14292905-14292924 MS.gene049883:intron 55.0%
! TAAGGCGATGGGCTTGGCTT+AGG + chr4.4:14292911-14292930 MS.gene049883:intron 55.0%
! TCAATCTGGCTTCCCCTAGG+AGG - chr4.4:14293271-14293290 None:intergenic 55.0%
!! GATTGGGGTAGTGGAGGAAG+GGG + chr4.4:14294502-14294521 MS.gene049883:intron 55.0%
!! GGATTGGGGTAGTGGAGGAA+GGG + chr4.4:14294501-14294520 MS.gene049883:intron 55.0%
!! TGGTAGTGGTGACGACTTCC+GGG - chr4.4:14293611-14293630 None:intergenic 55.0%
GCCACCATTATTGGCACCCC+AGG + chr4.4:14292357-14292376 MS.gene049883:CDS 60.0%
GTCAACTGCTCCCCACCACT+AGG - chr4.4:14293424-14293443 None:intergenic 60.0%
!! CAGGGGGTGAAAGGGGCATT+TGG + chr4.4:14293813-14293832 MS.gene049883:intron 60.0%
!! GGGATTGGGGTAGTGGAGGA+AGG + chr4.4:14294500-14294519 MS.gene049883:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 14292192 14295837 14292192 ID=MS.gene049883
chr4.4 mRNA 14292192 14295837 14292192 ID=MS.gene049883.t1;Parent=MS.gene049883
chr4.4 exon 14292192 14292378 14292192 ID=MS.gene049883.t1.exon1;Parent=MS.gene049883.t1
chr4.4 CDS 14292192 14292378 14292192 ID=cds.MS.gene049883.t1;Parent=MS.gene049883.t1
chr4.4 exon 14292464 14292537 14292464 ID=MS.gene049883.t1.exon2;Parent=MS.gene049883.t1
chr4.4 CDS 14292464 14292537 14292464 ID=cds.MS.gene049883.t1;Parent=MS.gene049883.t1
chr4.4 exon 14294983 14295130 14294983 ID=MS.gene049883.t1.exon3;Parent=MS.gene049883.t1
chr4.4 CDS 14294983 14295130 14294983 ID=cds.MS.gene049883.t1;Parent=MS.gene049883.t1
chr4.4 exon 14295740 14295837 14295740 ID=MS.gene049883.t1.exon4;Parent=MS.gene049883.t1
chr4.4 CDS 14295740 14295837 14295740 ID=cds.MS.gene049883.t1;Parent=MS.gene049883.t1
Gene Sequence

>MS.gene049883

ATGATACCAGGTGGAGGAGGAAGAAGTTCAACATCATCATGGGCACCGACAACCTCAGTGTCTGCTTCTGGAAAGAGAATTCAAAGAGAAATGGTTGAACTCAACAACGACCCTCCTCCTCATTGTTCTGCTGGTCCCAAGGGTGATAATCTCTATCACTGGATCGCCACCATTATTGGCACCCCAGGTTCACCATCTTCACCATTCAGCTTAGGTTGTTTGGGTTCAGATTGAATTTATCATAAAGTTGTTTTTTTTTTTTTTTTTTGTAGGAACACCTTACCAAGGTGGCATATTCTTCCTTGACATAATATTTCCTACTGACTATCCTTTCAAGCCTCCCCAGGTACTATTGGTATTTTTGCGGCTATTGTTTCTTTTTCTCAAGTTGGTGTTTGCTTTGGCATGTGGAAGAATGTTAGCATGAAATGAAACTGTATTTTTATATAGATTTAATCTTTATGCTCCGTCGGTATAAAATTATTTTACATGTGCATCTAATAATGTGTTGTTACTTCATTTAATGTGATTGAAAACATGAATTGTCATAATTATTAATTAACGCGAGAACACATTATTGGATGCATGTGTAAAATAACTTTACACTGTCAGTGTATAGAAATTAAAATCTTTTTATATAATGAATGCGTTAAGTTCCTTGAAGTTAATGCTTATTACTAATTGACATAAAGTTGTAATTCTATATACATTTAGTTTGGTAAGGCGATGGGCTTGGCTTAGGCTTATATTGTGCACCACATTGAGTAAAGCTAGAGAATGAATTGATACTTAAGCCATAGGATTCTCCCACCCAATAGGCTTGTCCTTTGGGATGGACTCTTCTCTAGAGCTCAAGTCATACCAACACTTGATAGTTTTATTGAGAGCTTGCCGAGTAGGATAGGTAAGCAAAATAGGAACAAACAGGAAAATGGCTACCTATACCAAAAGGGTCAAGAATGAATGTAATCATGGGTGGTTAGCCAGAATGCTCTCTCAACTCATGGTTAGTCTTTTGGGATGGTTTTACTTGTGGGCTCAAGTCATAATTCTTAAAGGCAAGACTGGAGTAACATCCTCCTAGGGGAAGCCAGATTGATAAAGTGAACTATTCTACAGTTATGCTTCACCCCTTCTATGGATGGGGATACCAAGCATAATTCTTGGAAAATGCATAAAATTGTTTTTGTAATCCTTCTCTTTTTCATAAAGGGATTGGTGTTGTTAATCCTAGTGGTGGGGAGCAGTTGACCTCTAAACTGCTAAAGTGGGATAGTAGATAGAGGGAAAGCCTCTATTGTGAAGACTAGAAAGTAGTTTAGGAAGGCTTCACTTTGGGAAGTTTATGGTTGAGATGATACCAGGGTTGAGTAGAAACACAGTAGAATTAAATGAGGAACAGAGAACAGAGGAGAACCCGGAAGTCGTCACCACTACCATAAAACCTAGTAGCCATTTCTGGAAGAAAACAAAGAAGGTAAGGGAGCAAGTGAGTCTTCGGATCATCACAAAACGGGGTCAGGAGGAAGTGAGTTTCACTTTCACATGGTGCAGAACGGCTGAAGCTGCTGACCAAAAATATTCAGGGAAAATGACCAAAAAGCCGAATAAATCTGGTGAACAGGGGGTGAAAGGGGCATTTGGCATCAAAGGTGGCTGTTGTGGCAGTCAACACAGTTTTCAGTCGAAATAGCTACTCTTGTATAATGCCAATGTGACATATCAGCTGTAAGTGTCGCAGCTGCGCTGCTGCAATTCCATTATCACGTGTGATCACCTGCTATTGACAACATAGATAGGGATAGTATGGTAGCTGATATTACAAGATATTTAGTCACTGGGTGGTCTGTTATTGTGTTTAACAATTTTGAACTATTGAATCTTACATCCTCTTATTTGAGTCCACTCTCCCACTTTCGAAGCAATAAACAATATATCATTTTGTATGCATTCAACTAATATTGACTGAAAAAAAAGGTTATTCACTGGCTTGAATGAACATATTTTTTTGCTTCTGATTTGATATAGGGAAAGTTCACTGGCTAACTGTTTTGTTCAAGATCATGTCATTTGAAGGAGCTAACTGGGTCAATGGGAACTTTCAGTTGTTTTTCAAGTAGAATTTAATAAATTGGTTACTTGTATTTGATAGAGCTAGAAATGAGAGTTTAGGTGTTGATGACGTGTCTAGTCATCCACACCATGTACCCAAAATATGGAGAGTGTATGCTAGGAAAAATAGAAAGCAAGAAGAGAATGATGAGCTGGCAGAAAAGGGGTGTGATGCGTGACTCACTTCTGTTATATTGGGATTGGGGTAGTGGAGGAAGGGGTCAGAAAAAGAATTCTTTTAGGAGCAGAGATTTGTGATATTCTTTGAGTCAGTGAGCATAGCTCTCAGCTGTATCAGGAAGTTTGCTTCCTTTGCTATTTTTCCTTTCTATCATTAATGAAATCCTCTCCATTTTATCTTTTCGATACTATTTGATGCTGTTACTGTGATTGAGTTTTAGTACCTATCAGTATTTGTATAAAATGCTTGTTTTTTTCTCCTTCTGAGCAAATCACTGTTACCTTCCCATTATGTAATTCTTCAAGTACAGTCCCTTTATTTTCAAAGCCTATAAACTTCCTGTAGCATGTCTTCTCTCAACTTTTCATAAACTTCTCTGTTTGAAGAGTTTGGTATAGGTTTAAAAAATAAAAAGGCAATATGCAGACAACAAAAAATTTATGGGGAGGTAAAAGTAATTTAATTGTTGTGTATTGCCTTGTTAAATTGAACTAGCAGGTAGTCTTCAGAACTCGCATTTACCACTGCAACGTAGAACCTGATGGCCGTGTTAGTATGGGAATATTGAAGGATGGTTGGAGTCCGGCACTAACAATTACTAAGGTGCTACTTGCTGTTAGATTACTTTTGACAAATCCCGACCCTTGTAAGTTTGTCTATTCTCTTCTTGAATGCTACTACCTTTGTCCCTATATCTAAGATCTCTTTAGTTAATGCACGAGAATTAAGAAAAATATTTCTATATTAAATTTGTCAACAATGTACAATCTCTTTTCAGAATTATCCATCAATTATTAAGAGAGATAAATGATTAGTCTTTTAATTTCCCCATTTAATTTAGGGTATGTATTTTTGTGAAAGATCACTAATGTATCTTGTAATTTGAAAATAATCTTACAAAAGGGAAAAGAAAAATTTACAAAGGAGTCTTACATATAGGGATGAAGGTTTACATGGTACTTGTATACTTAGAGCCTTTTGCTTCTGAATGCAAGAAAAGAGGAAATTATTGTATTATTACCTCCAGTCCTCCATGTCTTGAAAAAGCAGCATGGTTTAATAGGACACTCCGCTAATGATTATGTCTTTTAACACTGGATTCAATTAATTTTCAAACATGCAGTATTAGTAATACCAATATTTACATTTTGTTTGTATAGAAAGTAATAACTACACTTAAAATCAGCCGATACTCCAAGTAGCTTCTTCAAAAAAAAAATGATCTTAGAATGTAAAGTTGTTTTCGTTGTTGCAGACAATGCTGTTGTTCCTGGCATTGCTCACTTATATTTGGGAGACAGAGCAAAACATGATGATATTGCTGCAGAATGGACTATCCGATTCGCCAAGTGA
Protein sequence

>MS.gene049883.t1

MIPGGGGRSSTSSWAPTTSVSASGKRIQREMVELNNDPPPHCSAGPKGDNLYHWIATIIGTPGTPYQGGIFFLDIIFPTDYPFKPPQVVFRTRIYHCNVEPDGRVSMGILKDGWSPALTITKVLLAVRLLLTNPDPYNAVVPGIAHLYLGDRAKHDDIAAEWTIRFAK