AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08926

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08926.t1 MTR_8g085690 98.810 168 2 0 1 168 1 168 2.15e-122 342
MS.gene08926.t1 MTR_7g116940 51.034 145 71 0 23 167 2 146 1.42e-55 172
MS.gene08926.t1 MTR_1g021150 51.034 145 71 0 23 167 2 146 4.93e-55 171
MS.gene08926.t1 MTR_5g075580 51.034 145 71 0 23 167 2 146 6.13e-55 170
MS.gene08926.t1 MTR_3g062450 50.345 145 72 0 23 167 2 146 2.65e-54 169
MS.gene08926.t1 MTR_4g073240 51.034 145 71 0 23 167 2 146 4.02e-54 168
MS.gene08926.t1 MTR_8g071040 49.655 145 73 0 23 167 2 146 5.95e-54 168
MS.gene08926.t1 MTR_7g116940 48.684 152 71 1 23 167 2 153 1.53e-52 164
MS.gene08926.t1 MTR_1g021150 51.613 124 60 0 44 167 31 154 3.17e-45 146
MS.gene08926.t1 MTR_5g075580 52.137 117 56 0 51 167 1 117 3.33e-43 139
MS.gene08926.t1 MTR_4g073240 51.282 117 57 0 51 167 1 117 5.87e-42 136
MS.gene08926.t1 MTR_7g116940 53.922 102 47 0 23 124 2 103 7.50e-40 131
MS.gene08926.t1 MTR_2g078010 39.161 143 87 0 25 167 8 150 1.53e-34 119
MS.gene08926.t1 MTR_3g098780 42.568 148 77 4 26 168 6 150 2.89e-31 111
MS.gene08926.t1 MTR_2g078010 39.231 130 79 0 25 154 8 137 5.07e-31 109
MS.gene08926.t1 MTR_3g098780 42.568 148 77 4 26 168 30 174 6.37e-31 111
MS.gene08926.t1 MTR_2g078010 35.669 157 87 1 25 167 8 164 1.57e-30 109
MS.gene08926.t1 MTR_4g108080 34.091 132 87 0 25 156 7 138 2.32e-27 100
MS.gene08926.t1 MTR_8g468530 34.091 132 87 0 25 156 23 154 7.07e-27 99.8
MS.gene08926.t1 MTR_2g078010 43.564 101 57 0 25 125 8 108 3.25e-26 96.3
MS.gene08926.t1 MTR_1g095510 43.443 122 65 2 15 135 37 155 5.44e-26 98.2
MS.gene08926.t1 MTR_1g095510 43.333 120 64 2 15 133 37 153 3.07e-25 95.9
MS.gene08926.t1 MTR_4g076200 37.097 124 78 0 25 148 35 158 7.41e-25 95.1
MS.gene08926.t1 MTR_1g095510 46.237 93 50 0 43 135 9 101 2.68e-24 92.4
MS.gene08926.t1 MTR_4g073240 48.148 81 42 0 87 167 4 84 3.13e-24 90.5
MS.gene08926.t1 MTR_4g108080 37.037 108 68 0 25 132 7 114 8.25e-24 90.5
MS.gene08926.t1 MTR_5g009020 36.290 124 79 0 25 148 35 158 3.04e-23 90.9
MS.gene08926.t1 MTR_4g076200 38.679 106 65 0 43 148 12 117 9.71e-23 88.2
MS.gene08926.t1 MTR_3g110110 36.667 120 73 2 20 136 1 120 5.82e-20 81.6
MS.gene08926.t1 MTR_5g016630 36.111 108 67 1 50 155 37 144 1.63e-19 80.5
MS.gene08926.t1 MTR_4g094872 37.963 108 65 1 50 155 37 144 2.24e-19 80.1
MS.gene08926.t1 MTR_8g076490 36.207 116 70 3 9 123 4 116 5.43e-18 76.6
MS.gene08926.t1 MTR_2g096690 37.374 99 49 1 50 135 33 131 1.02e-17 75.9
MS.gene08926.t1 MTR_2g096690 37.374 99 49 1 50 135 33 131 1.03e-17 76.3
MS.gene08926.t1 MTR_7g087590 31.034 116 80 0 25 140 13 128 1.30e-17 77.8
MS.gene08926.t1 MTR_4g063490 31.624 117 67 1 49 152 32 148 6.46e-17 73.9
MS.gene08926.t1 MTR_4g108080 29.825 114 72 1 51 156 25 138 9.37e-17 73.2
MS.gene08926.t1 MTR_5g021260 33.613 119 71 3 9 123 2 116 2.00e-16 72.4
MS.gene08926.t1 MTR_2g096690 50.820 61 30 0 50 110 33 93 1.08e-14 67.0
MS.gene08926.t1 MTR_5g019480 29.851 134 88 3 9 138 16 147 1.06e-13 65.9
MS.gene08926.t1 MTR_5g019480 29.851 134 88 3 9 138 19 150 1.28e-13 65.9
MS.gene08926.t1 MTR_8g028920 29.268 123 85 2 48 168 26 148 1.76e-13 65.5
MS.gene08926.t1 MTR_7g451800 32.836 134 79 4 17 139 30 163 1.89e-13 67.0
MS.gene08926.t1 MTR_7g047620 32.836 134 79 4 17 139 30 163 1.89e-13 67.0
MS.gene08926.t1 MTR_8g098595 28.455 123 86 2 48 168 11 133 4.60e-13 63.9
MS.gene08926.t1 MTR_4g086440 32.540 126 75 3 21 136 33 158 4.66e-13 65.9
MS.gene08926.t1 MTR_7g047570 32.090 134 80 4 17 139 30 163 7.49e-13 65.5
MS.gene08926.t1 MTR_7g451770 32.090 134 80 4 17 139 30 163 7.49e-13 65.5
MS.gene08926.t1 MTR_2g013650 33.600 125 71 4 24 137 681 804 7.83e-13 65.9
MS.gene08926.t1 MTR_8g028920 32.075 106 70 2 65 168 4 109 8.53e-13 62.8
MS.gene08926.t1 MTR_4g020620 32.800 125 72 4 24 137 628 751 1.90e-12 64.7
MS.gene08926.t1 MTR_4g106690 31.746 126 78 4 48 168 26 148 3.11e-12 62.0
MS.gene08926.t1 MTR_4g088835 36.559 93 47 4 56 137 703 794 3.45e-12 63.9
MS.gene08926.t1 MTR_4g020620 32.800 125 72 4 24 137 570 693 4.65e-12 63.5
MS.gene08926.t1 MTR_1g112730 30.345 145 80 5 4 137 844 978 7.45e-12 63.2
MS.gene08926.t1 MTR_8g023380 27.907 129 76 3 22 141 5 125 8.44e-12 61.6
MS.gene08926.t1 MTR_0332s0040 34.234 111 60 5 55 154 187 295 1.13e-11 62.4
MS.gene08926.t1 MTR_0274s0030 32.258 124 74 3 24 137 113 236 1.33e-11 62.0
MS.gene08926.t1 MTR_4g007210 40.000 90 43 4 56 134 112 201 5.06e-11 60.5
MS.gene08926.t1 MTR_1g092465 36.082 97 42 4 56 137 267 358 5.56e-11 60.1
MS.gene08926.t1 MTR_1g092460 35.052 97 43 4 56 137 208 299 7.93e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08926.t1 AT3G13550 66.851 181 47 1 1 168 2 182 6.80e-87 253
MS.gene08926.t1 AT3G13550 67.785 149 35 1 1 136 2 150 1.31e-69 208
MS.gene08926.t1 AT3G08690 51.034 145 71 0 23 167 2 146 4.56e-56 173
MS.gene08926.t1 AT3G08690 51.034 145 71 0 23 167 2 146 4.56e-56 173
MS.gene08926.t1 AT2G16740 51.724 145 70 0 23 167 2 146 9.38e-56 172
MS.gene08926.t1 AT1G64230 51.724 145 70 0 23 167 2 146 2.27e-55 171
MS.gene08926.t1 AT1G64230 51.724 145 70 0 23 167 2 146 2.27e-55 171
MS.gene08926.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene08926.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene08926.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene08926.t1 AT5G56150 50.345 145 72 0 23 167 2 146 1.41e-54 169
MS.gene08926.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene08926.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene08926.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene08926.t1 AT4G27960 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene08926.t1 AT4G27960 48.649 148 76 0 20 167 29 176 9.24e-53 166
MS.gene08926.t1 AT5G41700 50.000 146 72 1 23 167 2 147 7.22e-52 162
MS.gene08926.t1 AT1G64230 48.052 154 71 1 23 167 2 155 3.55e-51 161
MS.gene08926.t1 AT3G08700 47.260 146 76 1 23 167 2 147 2.52e-49 156
MS.gene08926.t1 AT3G08700 47.260 146 76 1 23 167 2 147 2.52e-49 156
MS.gene08926.t1 AT1G64230 39.572 187 71 1 23 167 2 188 4.18e-46 149
MS.gene08926.t1 AT1G64230 39.572 187 71 1 23 167 2 188 4.18e-46 149
MS.gene08926.t1 AT5G41700 52.427 103 49 0 23 125 2 104 8.91e-39 129
MS.gene08926.t1 AT5G56150 50.000 108 54 0 23 130 2 109 1.18e-38 128
MS.gene08926.t1 AT5G53300 51.376 109 49 1 23 131 2 106 5.70e-38 126
MS.gene08926.t1 AT1G36340 50.400 125 62 0 43 167 28 152 1.99e-36 124
MS.gene08926.t1 AT1G36340 50.400 125 62 0 43 167 28 152 1.99e-36 124
MS.gene08926.t1 AT1G78870 40.559 143 85 0 25 167 8 150 9.55e-36 122
MS.gene08926.t1 AT1G16890 39.161 143 87 0 25 167 8 150 1.23e-34 119
MS.gene08926.t1 AT1G16890 39.189 148 85 1 25 167 12 159 2.93e-33 115
MS.gene08926.t1 AT5G50870 38.621 145 87 2 26 168 6 150 3.12e-29 106
MS.gene08926.t1 AT1G78870 42.727 110 63 0 58 167 8 117 4.98e-28 101
MS.gene08926.t1 AT1G14400 34.028 144 90 1 25 163 7 150 6.80e-28 102
MS.gene08926.t1 AT1G14400 34.028 144 90 1 25 163 7 150 6.80e-28 102
MS.gene08926.t1 AT1G16890 41.818 110 64 0 58 167 8 117 1.73e-27 100
MS.gene08926.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene08926.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene08926.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene08926.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene08926.t1 AT1G78870 44.554 101 56 0 25 125 8 108 6.66e-27 98.2
MS.gene08926.t1 AT5G62540 34.532 139 91 0 23 161 5 143 1.12e-26 99.0
MS.gene08926.t1 AT5G50870 37.821 156 84 4 26 168 6 161 2.23e-26 99.8
MS.gene08926.t1 AT1G78870 42.342 111 63 1 58 167 8 118 3.21e-26 96.7
MS.gene08926.t1 AT3G24515 37.821 156 84 3 26 168 10 165 1.96e-25 100
MS.gene08926.t1 AT3G20060 37.500 128 78 1 10 135 22 149 6.81e-24 92.4
MS.gene08926.t1 AT2G32790 34.839 155 100 1 15 168 22 176 1.35e-23 91.7
MS.gene08926.t1 AT1G50490 36.765 136 84 1 15 148 26 161 3.14e-23 90.9
MS.gene08926.t1 AT3G24515 32.044 181 85 3 26 168 10 190 6.56e-22 91.3
MS.gene08926.t1 AT3G20060 39.583 96 58 0 40 135 9 104 1.15e-20 82.8
MS.gene08926.t1 AT5G25760 37.500 120 72 2 20 136 1 120 1.25e-20 83.6
MS.gene08926.t1 AT5G25760 37.500 120 72 2 20 136 1 120 1.25e-20 83.6
MS.gene08926.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene08926.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene08926.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene08926.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene08926.t1 AT3G57870 39.423 104 61 1 50 151 38 141 6.34e-19 79.0
MS.gene08926.t1 AT3G46460 37.374 99 49 1 50 135 33 131 5.97e-18 76.6
MS.gene08926.t1 AT1G75440 36.975 119 65 4 11 123 2 116 4.47e-17 74.3
MS.gene08926.t1 AT5G59300 35.354 99 51 1 50 135 33 131 5.67e-16 71.6
MS.gene08926.t1 AT3G55380 29.661 118 70 1 50 154 34 151 1.81e-15 70.1
MS.gene08926.t1 AT4G36410 32.773 119 70 4 9 123 4 116 2.95e-15 69.7
MS.gene08926.t1 AT5G42990 34.167 120 69 4 11 124 2 117 5.85e-15 68.9
MS.gene08926.t1 AT1G45050 35.043 117 72 3 11 124 2 117 6.44e-15 68.6
MS.gene08926.t1 AT2G46030 34.127 126 75 4 48 168 26 148 1.41e-14 68.2
MS.gene08926.t1 AT2G46030 34.127 126 75 4 48 168 26 148 1.41e-14 68.2
MS.gene08926.t1 AT2G46030 34.127 126 75 4 48 168 29 151 2.48e-14 67.8
MS.gene08926.t1 AT2G46030 34.127 126 75 4 48 168 29 151 2.48e-14 67.8
MS.gene08926.t1 AT2G46030 30.128 156 98 5 18 168 71 220 6.30e-14 67.8
MS.gene08926.t1 AT4G36800 31.387 137 86 5 7 138 15 148 1.93e-13 65.1
MS.gene08926.t1 AT4G36800 31.387 137 86 5 7 138 15 148 1.93e-13 65.1
MS.gene08926.t1 AT1G17280 26.772 127 86 1 22 141 5 131 3.84e-13 65.5
MS.gene08926.t1 AT5G41340 30.081 123 84 2 48 168 26 148 4.70e-13 64.3
MS.gene08926.t1 AT3G55380 30.769 104 59 1 50 140 34 137 1.04e-12 63.5
MS.gene08926.t1 AT1G63800 29.268 123 85 2 48 168 11 133 1.08e-12 63.2
MS.gene08926.t1 AT1G63800 29.268 123 85 2 48 168 26 148 1.09e-12 63.2
MS.gene08926.t1 AT2G18600 31.387 137 85 6 8 138 16 149 1.51e-12 62.8
MS.gene08926.t1 AT2G18600 31.387 137 85 6 8 138 16 149 1.51e-12 62.8
MS.gene08926.t1 AT5G41340 33.333 105 68 2 66 168 9 113 2.01e-12 62.0
MS.gene08926.t1 AT5G50430 27.907 129 76 3 22 141 5 125 5.67e-12 62.4
MS.gene08926.t1 AT5G50430 27.907 129 76 3 22 141 5 125 5.67e-12 62.4
MS.gene08926.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene08926.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene08926.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene08926.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene08926.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene08926.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene08926.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene08926.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene08926.t1 AT3G15355 32.558 129 67 4 24 137 334 457 1.30e-11 62.4
MS.gene08926.t1 AT1G53025 31.250 128 68 4 25 137 274 396 3.83e-11 60.8
MS.gene08926.t1 AT3G46460 34.146 82 41 1 67 135 8 89 4.36e-11 57.8
MS.gene08926.t1 AT3G46460 34.146 82 41 1 67 135 8 89 4.36e-11 57.8
MS.gene08926.t1 AT1G53025 31.250 128 68 4 25 137 274 396 5.02e-11 60.5

Find 55 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTGCTCACTTATATT+TGG 0.167783 4.4:+14460932 MS.gene08926:CDS
CACTGGATCGCCACCATTAT+TGG 0.225414 4.4:+14457532 MS.gene08926:CDS
ACCTGATGGCCGTGTTAGTA+TGG 0.244162 4.4:+14460196 MS.gene08926:CDS
GGCATTGCTCACTTATATTT+GGG 0.312742 4.4:+14460933 MS.gene08926:CDS
ACAACCTCAGTGTCTGCTTC+TGG 0.313526 4.4:+14457424 MS.gene08926:CDS
GCAGACAATGCTGTTGTTCC+TGG 0.324492 4.4:+14460912 MS.gene08926:intron
CCTCCTCCTCATTGTTCTGC+TGG 0.384460 4.4:+14457487 MS.gene08926:CDS
TGAACCTGGGGTGCCAATAA+TGG 0.405631 4.4:-14457545 None:intergenic
ATATTATTCACTTGGCGAAT+CGG 0.441674 4.4:-14460998 None:intergenic
TCATTGTTCTGCTGGTCCCA+AGG 0.444109 4.4:+14457495 MS.gene08926:CDS
CTTATATCATATTATTCACT+TGG 0.451971 4.4:-14461006 None:intergenic
AAAGAGAATTCAAAGAGAAA+TGG 0.471148 4.4:+14457447 MS.gene08926:CDS
TGGGAATATTGAAGGATGGT+TGG 0.488902 4.4:+14460216 MS.gene08926:CDS
CCCATACTAACACGGCCATC+AGG 0.491401 4.4:-14460197 None:intergenic
GAACTTCTTCCTCCTCCACC+TGG 0.495695 4.4:-14457382 None:intergenic
CATTGTTCTGCTGGTCCCAA+GGG 0.498720 4.4:+14457496 MS.gene08926:CDS
ATTGAAGGATGGTTGGAGTC+CGG 0.503896 4.4:+14460223 MS.gene08926:CDS
GTGATAGAGATTATCACCCT+TGG 0.504556 4.4:-14457512 None:intergenic
AGTACCTGGGGAGGCTTGAA+AGG 0.507084 4.4:-14457695 None:intergenic
AAGAATATGCCACCTTGGTA+AGG 0.510733 4.4:-14457644 None:intergenic
GCCACCATTATTGGCACCCC+AGG 0.511138 4.4:+14457541 MS.gene08926:CDS
TAGACAAACTTACAAGGGTC+GGG 0.513888 4.4:-14460296 None:intergenic
TGTTAGTATGGGAATATTGA+AGG 0.515562 4.4:+14460208 MS.gene08926:CDS
TGATAGAGATTATCACCCTT+GGG 0.525358 4.4:-14457511 None:intergenic
ACCTTAGTAATTGTTAGTGC+CGG 0.526027 4.4:-14460242 None:intergenic
CTATCCTTTCAAGCCTCCCC+AGG 0.527880 4.4:+14457691 MS.gene08926:CDS
GAAGAAGTTCAACATCATCA+TGG 0.530685 4.4:+14457395 MS.gene08926:CDS
CCAGCAGAACAATGAGGAGG+AGG 0.534364 4.4:-14457487 None:intergenic
AAATATAAGTGAGCAATGCC+AGG 0.535276 4.4:-14460930 None:intergenic
ATAGACAAACTTACAAGGGT+CGG 0.537656 4.4:-14460297 None:intergenic
AGGGTGATAATCTCTATCAC+TGG 0.546775 4.4:+14457515 MS.gene08926:CDS
GTGATGATACCAGGTGGAGG+AGG 0.546811 4.4:+14457373 None:intergenic
CCTGATGGCCGTGTTAGTAT+GGG 0.550021 4.4:+14460197 MS.gene08926:CDS
TCCGGCACTAACAATTACTA+AGG 0.562618 4.4:+14460241 MS.gene08926:CDS
GAAGCAGACACTGAGGTTGT+CGG 0.570928 4.4:-14457421 None:intergenic
ATGATGATATTGCTGCAGAA+TGG 0.574575 4.4:+14460970 MS.gene08926:CDS
CAAGGAAGAATATGCCACCT+TGG 0.575948 4.4:-14457649 None:intergenic
AAGAAGTTCAACATCATCAT+GGG 0.593129 4.4:+14457396 MS.gene08926:CDS
AGTATGGGAATATTGAAGGA+TGG 0.608029 4.4:+14460212 MS.gene08926:CDS
GGAGGTGAAGTGATGATACC+AGG 0.617355 4.4:+14457364 None:intergenic
CAGTAGGAAATATTATGTCA+AGG 0.623127 4.4:-14457667 None:intergenic
AATACCAATAGTACCTGGGG+AGG 0.638913 4.4:-14457704 None:intergenic
CACTGCAACGTAGAACCTGA+TGG 0.643178 4.4:+14460182 MS.gene08926:CDS
GAAGTGATGATACCAGGTGG+AGG 0.643516 4.4:+14457370 None:intergenic
CAGCAGAACAATGAGGAGGA+GGG 0.654094 4.4:-14457486 None:intergenic
CATCAGGTTCTACGTTGCAG+TGG 0.655107 4.4:-14460181 None:intergenic
TTTGTAGGAACACCTTACCA+AGG 0.659022 4.4:+14457632 MS.gene08926:intron
GGCTTGAAAGGATAGTCAGT+AGG 0.660032 4.4:-14457683 None:intergenic
CTTTCCAGAAGCAGACACTG+AGG 0.663553 4.4:-14457428 None:intergenic
TCAATATTCCCATACTAACA+CGG 0.686088 4.4:-14460205 None:intergenic
ACCTGGGGTGCCAATAATGG+TGG 0.689217 4.4:-14457542 None:intergenic
GGACCAGCAGAACAATGAGG+AGG 0.696711 4.4:-14457490 None:intergenic
GTAGGAACACCTTACCAAGG+TGG 0.698581 4.4:+14457635 MS.gene08926:intron
TTGGGACCAGCAGAACAATG+AGG 0.713885 4.4:-14457493 None:intergenic
GGTGAAGTGATGATACCAGG+TGG 0.731443 4.4:+14457367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGGTTTAAAAAATAAAA+AGG + chr4.4:14460053-14460072 MS.gene08926:intron 10.0%
!! AATTCTATATACATTTAGTT+TGG + chr4.4:14458063-14458082 MS.gene08926:intron 15.0%
!! TACAAACAAAATGTAAATAT+TGG - chr4.4:14460797-14460816 None:intergenic 15.0%
!! TCAAGTAGAATTTAATAAAT+TGG + chr4.4:14459479-14459498 MS.gene08926:intron 15.0%
!! TTGAAAATAATCTTACAAAA+GGG + chr4.4:14460542-14460561 MS.gene08926:intron 15.0%
!! TTTGAAAATAATCTTACAAA+AGG + chr4.4:14460541-14460560 MS.gene08926:intron 15.0%
!!! ATAAAGTTGTTTTTTTTTGT+AGG + chr4.4:14457617-14457636 MS.gene08926:intron 15.0%
!! AATACATACCCTAAATTAAA+TGG - chr4.4:14460491-14460510 None:intergenic 20.0%
!! ATACATACCCTAAATTAAAT+GGG - chr4.4:14460490-14460509 None:intergenic 20.0%
!! TACTTGAAGAATTACATAAT+GGG - chr4.4:14459947-14459966 None:intergenic 20.0%
!! TTAAAAGACATAATCATTAG+CGG - chr4.4:14460732-14460751 None:intergenic 20.0%
!! TTATCTCTCTTAATAATTGA+TGG - chr4.4:14460447-14460466 None:intergenic 20.0%
!!! ATAGTATCGAAAAGATAAAA+TGG - chr4.4:14459831-14459850 None:intergenic 20.0%
!!! CATTTTATACAAATACTGAT+AGG - chr4.4:14459885-14459904 None:intergenic 20.0%
!!! CTAATATTGACTGAAAAAAA+AGG + chr4.4:14459322-14459341 MS.gene08926:intron 20.0%
!!! GTAAAATAATTTTATACCGA+CGG - chr4.4:14457836-14457855 None:intergenic 20.0%
!!! TAATTTCCCCATTTAATTTA+GGG + chr4.4:14460480-14460499 MS.gene08926:intron 20.0%
!!! TATATACATTTAGTTTGGTA+AGG + chr4.4:14458068-14458087 MS.gene08926:intron 20.0%
!!! TTAATTTCCCCATTTAATTT+AGG + chr4.4:14460479-14460498 MS.gene08926:intron 20.0%
!!! TTATAGGCTTTGAAAATAAA+GGG - chr4.4:14459974-14459993 None:intergenic 20.0%
!!! TTTATAGGCTTTGAAAATAA+AGG - chr4.4:14459975-14459994 None:intergenic 20.0%
! AAACACAGTAGAATTAAATG+AGG + chr4.4:14458741-14458760 MS.gene08926:intron 25.0%
! AAAGAGAATTCAAAGAGAAA+TGG + chr4.4:14457447-14457466 MS.gene08926:CDS 25.0%
! AATAGTTCACTTTATCAATC+TGG - chr4.4:14458460-14458479 None:intergenic 25.0%
! ACTAAAGAGATCTTAGATAT+AGG - chr4.4:14460351-14460370 None:intergenic 25.0%
! AGTAATAAGCATTAACTTCA+AGG - chr4.4:14458026-14458045 None:intergenic 25.0%
! ATAGAAAGGAAAAATAGCAA+AGG - chr4.4:14459791-14459810 None:intergenic 25.0%
! ATTACAAGATATTTAGTCAC+TGG + chr4.4:14459185-14459204 MS.gene08926:intron 25.0%
! CAGACAACAAAAAATTTATG+GGG + chr4.4:14460083-14460102 MS.gene08926:intron 25.0%
! CTAAAGAGATCTTAGATATA+GGG - chr4.4:14460350-14460369 None:intergenic 25.0%
! GCAGACAACAAAAAATTTAT+GGG + chr4.4:14460082-14460101 MS.gene08926:intron 25.0%
! GGATTTCATTAATGATAGAA+AGG - chr4.4:14459805-14459824 None:intergenic 25.0%
! GGGAAAAGAAAAATTTACAA+AGG + chr4.4:14460562-14460581 MS.gene08926:intron 25.0%
! GTACTTGAAGAATTACATAA+TGG - chr4.4:14459948-14459967 None:intergenic 25.0%
! TACATACCCTAAATTAAATG+GGG - chr4.4:14460489-14460508 None:intergenic 25.0%
! TCAAGAATGAATGTAATCAT+GGG + chr4.4:14458320-14458339 MS.gene08926:intron 25.0%
! TGAAAAAAAAGGTTATTCAC+TGG + chr4.4:14459333-14459352 MS.gene08926:intron 25.0%
! TGCAGACAACAAAAAATTTA+TGG + chr4.4:14460081-14460100 MS.gene08926:intron 25.0%
! TTACAAGATATTTAGTCACT+GGG + chr4.4:14459186-14459205 MS.gene08926:intron 25.0%
!! ATGATTATGTCTTTTAACAC+TGG + chr4.4:14460735-14460754 MS.gene08926:intron 25.0%
!! GTCAGAAAAAGAATTCTTTT+AGG + chr4.4:14459699-14459718 MS.gene08926:intron 25.0%
!! TCATTTTCCCTGAATATTTT+TGG - chr4.4:14458942-14458961 None:intergenic 25.0%
!! TTTGCTTCTGATTTGATATA+GGG + chr4.4:14459374-14459393 MS.gene08926:intron 25.0%
!!! AATCCTTCTCTTTTTCATAA+AGG + chr4.4:14458557-14458576 MS.gene08926:intron 25.0%
!!! ATCCTTCTCTTTTTCATAAA+GGG + chr4.4:14458558-14458577 MS.gene08926:intron 25.0%
!!! ATTGTTTCTTTTTCTCAAGT+TGG + chr4.4:14457736-14457755 MS.gene08926:intron 25.0%
!!! TTTTGCTTCTGATTTGATAT+AGG + chr4.4:14459373-14459392 MS.gene08926:intron 25.0%
!!! TTTTTTTTGAAGAAGCTACT+TGG - chr4.4:14460857-14460876 None:intergenic 25.0%
AAAAAGCAGCATGGTTTAAT+AGG + chr4.4:14460701-14460720 MS.gene08926:intron 30.0%
AAAAATACCAATAGTACCTG+GGG - chr4.4:14457710-14457729 None:intergenic 30.0%
AAGAAGTTCAACATCATCAT+GGG + chr4.4:14457396-14457415 MS.gene08926:CDS 30.0%
AATAGGAACAAACAGGAAAA+TGG + chr4.4:14458279-14458298 MS.gene08926:intron 30.0%
ACAACAAAAAATTTATGGGG+AGG + chr4.4:14460086-14460105 MS.gene08926:intron 30.0%
ACTTCTGTTATATTGGGATT+GGG + chr4.4:14459661-14459680 MS.gene08926:intron 30.0%
AGAGAATAGACAAACTTACA+AGG - chr4.4:14460305-14460324 None:intergenic 30.0%
ATAATTCTTAAAGGCAAGAC+TGG + chr4.4:14458412-14458431 MS.gene08926:intron 30.0%
ATCCCTTTATGAAAAAGAGA+AGG - chr4.4:14458563-14458582 None:intergenic 30.0%
ATCGAAAAGATAAAATGGAG+AGG - chr4.4:14459826-14459845 None:intergenic 30.0%
ATTGTTTATTGCTTCGAAAG+TGG - chr4.4:14459280-14459299 None:intergenic 30.0%
ATTTAATCTTTATGCTCCGT+CGG + chr4.4:14457817-14457836 MS.gene08926:intron 30.0%
CAAAAATACCAATAGTACCT+GGG - chr4.4:14457711-14457730 None:intergenic 30.0%
CAGTAGGAAATATTATGTCA+AGG - chr4.4:14457670-14457689 None:intergenic 30.0%
GAAGAAAACAAAGAAGGTAA+GGG + chr4.4:14458828-14458847 MS.gene08926:intron 30.0%
GAGAATAGACAAACTTACAA+GGG - chr4.4:14460304-14460323 None:intergenic 30.0%
GCTCAAGTCATAATTCTTAA+AGG + chr4.4:14458403-14458422 MS.gene08926:intron 30.0%
GTCAAGAATGAATGTAATCA+TGG + chr4.4:14458319-14458338 MS.gene08926:intron 30.0%
TAAGCAAAATAGGAACAAAC+AGG + chr4.4:14458272-14458291 MS.gene08926:intron 30.0%
TCAATATTCCCATACTAACA+CGG - chr4.4:14460208-14460227 None:intergenic 30.0%
TGAAGACTAGAAAGTAGTTT+AGG + chr4.4:14458667-14458686 MS.gene08926:intron 30.0%
TGAATTGATACTTAAGCCAT+AGG + chr4.4:14458145-14458164 MS.gene08926:intron 30.0%
TGACTCACTTCTGTTATATT+GGG + chr4.4:14459655-14459674 MS.gene08926:intron 30.0%
TGCTATTGACAACATAGATA+GGG + chr4.4:14459145-14459164 MS.gene08926:intron 30.0%
TGTTAGTATGGGAATATTGA+AGG + chr4.4:14460208-14460227 MS.gene08926:CDS 30.0%
TTGTTTATTGCTTCGAAAGT+GGG - chr4.4:14459279-14459298 None:intergenic 30.0%
! CATTTTCCAAGAATTATGCT+TGG - chr4.4:14458520-14458539 None:intergenic 30.0%
! TGAAGAATTACATAATGGGA+AGG - chr4.4:14459943-14459962 None:intergenic 30.0%
! TTCAAGATCATGTCATTTGA+AGG + chr4.4:14459421-14459440 MS.gene08926:intron 30.0%
! TTTCTGGAAGAAAACAAAGA+AGG + chr4.4:14458822-14458841 MS.gene08926:intron 30.0%
!! AGGTACTATTGGTATTTTTG+CGG + chr4.4:14457711-14457730 MS.gene08926:intron 30.0%
!! TCTCTTTTTCATAAAGGGAT+TGG + chr4.4:14458563-14458582 MS.gene08926:intron 30.0%
!!! TCTTTGTTTTCTTCCAGAAA+TGG - chr4.4:14458822-14458841 None:intergenic 30.0%
AAAGTGGGATAGTAGATAGA+GGG + chr4.4:14458631-14458650 MS.gene08926:intron 35.0%
AAATATAAGTGAGCAATGCC+AGG - chr4.4:14460933-14460952 None:intergenic 35.0%
AAATGGCTACCTATACCAAA+AGG + chr4.4:14458296-14458315 MS.gene08926:intron 35.0%
AAGTGAGTTTCACTTTCACA+TGG + chr4.4:14458893-14458912 MS.gene08926:intron 35.0%
AATGGCTACCTATACCAAAA+GGG + chr4.4:14458297-14458316 MS.gene08926:intron 35.0%
ACAAAGGAGTCTTACATACA+GGG + chr4.4:14460578-14460597 MS.gene08926:intron 35.0%
ACATGCTACAGGAAGTTTAT+AGG - chr4.4:14459990-14460009 None:intergenic 35.0%
ACCAAAAAGCCGAATAAATC+TGG + chr4.4:14458961-14458980 MS.gene08926:intron 35.0%
ACCTTAGTAATTGTTAGTGC+CGG - chr4.4:14460245-14460264 None:intergenic 35.0%
ACTTCTCTGTTTGAAGAGTT+TGG + chr4.4:14460030-14460049 MS.gene08926:intron 35.0%
AGAATGAATGTAATCATGGG+TGG + chr4.4:14458323-14458342 MS.gene08926:intron 35.0%
AGAGCTAGAAATGAGAGTTT+AGG + chr4.4:14459517-14459536 MS.gene08926:intron 35.0%
AGTATGGGAATATTGAAGGA+TGG + chr4.4:14460212-14460231 MS.gene08926:CDS 35.0%
ATAGACAAACTTACAAGGGT+CGG - chr4.4:14460300-14460319 None:intergenic 35.0%
ATGATGATATTGCTGCAGAA+TGG + chr4.4:14460970-14460989 MS.gene08926:CDS 35.0%
CAACATAGATAGGGATAGTA+TGG + chr4.4:14459154-14459173 MS.gene08926:intron 35.0%
CACTTCTGTTATATTGGGAT+TGG + chr4.4:14459660-14459679 MS.gene08926:intron 35.0%
CCTGCTAGTTCAATTTAACA+AGG - chr4.4:14460139-14460158 None:intergenic 35.0%
CCTTGTTAAATTGAACTAGC+AGG + chr4.4:14460136-14460155 MS.gene08926:intron 35.0%
CTATCTATGTTGTCAATAGC+AGG - chr4.4:14459146-14459165 None:intergenic 35.0%
CTGCTATTGACAACATAGAT+AGG + chr4.4:14459144-14459163 MS.gene08926:intron 35.0%
CTGCTGACCAAAAATATTCA+GGG + chr4.4:14458932-14458951 MS.gene08926:intron 35.0%
CTGTTTGAAGAGTTTGGTAT+AGG + chr4.4:14460036-14460055 MS.gene08926:intron 35.0%
CTTCTGTTATATTGGGATTG+GGG + chr4.4:14459662-14459681 MS.gene08926:intron 35.0%
GAAGAAGTTCAACATCATCA+TGG + chr4.4:14457395-14457414 MS.gene08926:CDS 35.0%
GACTAGAAAGTAGTTTAGGA+AGG + chr4.4:14458671-14458690 MS.gene08926:intron 35.0%
GATCTTAGATATAGGGACAA+AGG - chr4.4:14460343-14460362 None:intergenic 35.0%
GCAAAAATACCAATAGTACC+TGG - chr4.4:14457712-14457731 None:intergenic 35.0%
GGAAGAAAACAAAGAAGGTA+AGG + chr4.4:14458827-14458846 MS.gene08926:intron 35.0%
GGCATTGCTCACTTATATTT+GGG + chr4.4:14460933-14460952 MS.gene08926:CDS 35.0%
GTAGGATAGGTAAGCAAAAT+AGG + chr4.4:14458262-14458281 MS.gene08926:intron 35.0%
GTGACTCACTTCTGTTATAT+TGG + chr4.4:14459654-14459673 MS.gene08926:intron 35.0%
TAAAACCTAGTAGCCATTTC+TGG + chr4.4:14458806-14458825 MS.gene08926:intron 35.0%
TAAAGTGGGATAGTAGATAG+AGG + chr4.4:14458630-14458649 MS.gene08926:intron 35.0%
TACAAAGGAGTCTTACATAC+AGG + chr4.4:14460577-14460596 MS.gene08926:intron 35.0%
TATCCCACTTTAGCAGTTTA+GGG - chr4.4:14458622-14458641 None:intergenic 35.0%
TGATAGAGATTATCACCCTT+GGG - chr4.4:14457514-14457533 None:intergenic 35.0%
TGGCATTGCTCACTTATATT+TGG + chr4.4:14460932-14460951 MS.gene08926:CDS 35.0%
TTAACGCGAGAACACATTAT+TGG + chr4.4:14457925-14457944 MS.gene08926:intron 35.0%
TTACAGCTGATATGTCACAT+TGG - chr4.4:14459079-14459098 None:intergenic 35.0%
TTATGGTTGAGATGATACCA+GGG + chr4.4:14458710-14458729 MS.gene08926:intron 35.0%
TTCTTGCATTCAGAAGCAAA+AGG - chr4.4:14460637-14460656 None:intergenic 35.0%
TTGATATAGGGAAAGTTCAC+TGG + chr4.4:14459386-14459405 MS.gene08926:intron 35.0%
TTTATGGTTGAGATGATACC+AGG + chr4.4:14458709-14458728 MS.gene08926:intron 35.0%
! AAATATGGAGAGTGTATGCT+AGG + chr4.4:14459578-14459597 MS.gene08926:intron 35.0%
! ACATTCATTCTTGACCCTTT+TGG - chr4.4:14458314-14458333 None:intergenic 35.0%
! ACCAGATTTATTCGGCTTTT+TGG - chr4.4:14458965-14458984 None:intergenic 35.0%
! AGCATACACTCTCCATATTT+TGG - chr4.4:14459578-14459597 None:intergenic 35.0%
! ATTCTTGACCCTTTTGGTAT+AGG - chr4.4:14458308-14458327 None:intergenic 35.0%
! CTTTCTAGTCTTCACAATAG+AGG - chr4.4:14458661-14458680 None:intergenic 35.0%
! GAAATGGCTACTAGGTTTTA+TGG - chr4.4:14458806-14458825 None:intergenic 35.0%
! GCATACACTCTCCATATTTT+GGG - chr4.4:14459577-14459596 None:intergenic 35.0%
! TTTTGCTTACCTATCCTACT+CGG - chr4.4:14458261-14458280 None:intergenic 35.0%
!! ATTGGTGTTGTTAATCCTAG+TGG + chr4.4:14458581-14458600 MS.gene08926:intron 35.0%
!! ATTTAGTTTGGTAAGGCGAT+GGG + chr4.4:14458075-14458094 MS.gene08926:intron 35.0%
!! TTCTCTAGCTTTACTCAATG+TGG - chr4.4:14458125-14458144 None:intergenic 35.0%
!! TTTGGGATGGTTTTACTTGT+GGG + chr4.4:14458381-14458400 MS.gene08926:intron 35.0%
!!! CAACTCATGGTTAGTCTTTT+GGG + chr4.4:14458364-14458383 MS.gene08926:intron 35.0%
!!! TCAACTCATGGTTAGTCTTT+TGG + chr4.4:14458363-14458382 MS.gene08926:intron 35.0%
!!! TTTTGGGATGGTTTTACTTG+TGG + chr4.4:14458380-14458399 MS.gene08926:intron 35.0%
AAATGAGGAACAGAGAACAG+AGG + chr4.4:14458756-14458775 MS.gene08926:intron 40.0%
AAGAATATGCCACCTTGGTA+AGG - chr4.4:14457647-14457666 None:intergenic 40.0%
AATGATGAGCTGGCAGAAAA+GGG + chr4.4:14459622-14459641 MS.gene08926:intron 40.0%
AGGGTGATAATCTCTATCAC+TGG + chr4.4:14457515-14457534 MS.gene08926:CDS 40.0%
AGTCTTACATACAGGGATGA+AGG + chr4.4:14460585-14460604 MS.gene08926:intron 40.0%
AGTTTAGGAAGGCTTCACTT+TGG + chr4.4:14458682-14458701 MS.gene08926:intron 40.0%
ATCCCACTTTAGCAGTTTAG+GGG - chr4.4:14458621-14458640 None:intergenic 40.0%
CAAGATATTTAGTCACTGGG+TGG + chr4.4:14459189-14459208 MS.gene08926:intron 40.0%
CACACCATGTACCCAAAATA+TGG + chr4.4:14459563-14459582 MS.gene08926:intron 40.0%
CATGTCTTGAAAAAGCAGCA+TGG + chr4.4:14460692-14460711 MS.gene08926:intron 40.0%
CCCTGTTCACCAGATTTATT+CGG - chr4.4:14458973-14458992 None:intergenic 40.0%
CCGAATAAATCTGGTGAACA+GGG + chr4.4:14458970-14458989 MS.gene08926:intron 40.0%
CGAATAAATCTGGTGAACAG+GGG + chr4.4:14458971-14458990 MS.gene08926:intron 40.0%
CTATCCCACTTTAGCAGTTT+AGG - chr4.4:14458623-14458642 None:intergenic 40.0%
GAAGAAGCTACTTGGAGTAT+CGG - chr4.4:14460849-14460868 None:intergenic 40.0%
GAATAAATCTGGTGAACAGG+GGG + chr4.4:14458972-14458991 MS.gene08926:intron 40.0%
GCTGCTGACCAAAAATATTC+AGG + chr4.4:14458931-14458950 MS.gene08926:intron 40.0%
GCTTCTGAATGCAAGAAAAG+AGG + chr4.4:14460640-14460659 MS.gene08926:intron 40.0%
GGGATACCAAGCATAATTCT+TGG + chr4.4:14458511-14458530 MS.gene08926:intron 40.0%
GTCATTTGAAGGAGCTAACT+GGG + chr4.4:14459432-14459451 MS.gene08926:intron 40.0%
GTCTTCGGATCATCACAAAA+CGG + chr4.4:14458860-14458879 MS.gene08926:intron 40.0%
GTGATAGAGATTATCACCCT+TGG - chr4.4:14457515-14457534 None:intergenic 40.0%
GTTTAGGAAGGCTTCACTTT+GGG + chr4.4:14458683-14458702 MS.gene08926:intron 40.0%
TACAGGGATGAAGGTTTACA+TGG + chr4.4:14460594-14460613 MS.gene08926:intron 40.0%
TAGACAAACTTACAAGGGTC+GGG - chr4.4:14460299-14460318 None:intergenic 40.0%
TCCGGCACTAACAATTACTA+AGG + chr4.4:14460241-14460260 MS.gene08926:CDS 40.0%
TCTTCGGATCATCACAAAAC+GGG + chr4.4:14458861-14458880 MS.gene08926:intron 40.0%
TGGGAATATTGAAGGATGGT+TGG + chr4.4:14460216-14460235 MS.gene08926:CDS 40.0%
TGTTGTTAATCCTAGTGGTG+GGG + chr4.4:14458586-14458605 MS.gene08926:intron 40.0%
TTATATTGGGATTGGGGTAG+TGG + chr4.4:14459668-14459687 MS.gene08926:intron 40.0%
TTCTTCCAGAAATGGCTACT+AGG - chr4.4:14458814-14458833 None:intergenic 40.0%
TTTGTAGGAACACCTTACCA+AGG + chr4.4:14457632-14457651 MS.gene08926:intron 40.0%
! ACCATTCAGCTTAGGTTGTT+TGG + chr4.4:14457576-14457595 MS.gene08926:intron 40.0%
! CCATTCAGCTTAGGTTGTTT+GGG + chr4.4:14457577-14457596 MS.gene08926:intron 40.0%
! GCTTCACTTTGGGAAGTTTA+TGG + chr4.4:14458693-14458712 MS.gene08926:intron 40.0%
! GTGTTGTTAATCCTAGTGGT+GGG + chr4.4:14458585-14458604 MS.gene08926:intron 40.0%
! TGTCATTTGAAGGAGCTAAC+TGG + chr4.4:14459431-14459450 MS.gene08926:intron 40.0%
!! CATATTTTGGGTACATGGTG+TGG - chr4.4:14459565-14459584 None:intergenic 40.0%
!! CATTTAGTTTGGTAAGGCGA+TGG + chr4.4:14458074-14458093 MS.gene08926:intron 40.0%
!! CTCTCCATATTTTGGGTACA+TGG - chr4.4:14459570-14459589 None:intergenic 40.0%
!! GCTACTAGGTTTTATGGTAG+TGG - chr4.4:14458800-14458819 None:intergenic 40.0%
!! GTAACAGTGATTTGCTCAGA+AGG - chr4.4:14459921-14459940 None:intergenic 40.0%
!! TCTCAAGTTGGTGTTTGCTT+TGG + chr4.4:14457748-14457767 MS.gene08926:intron 40.0%
!!! CATGCTGCTTTTTCAAGACA+TGG - chr4.4:14460694-14460713 None:intergenic 40.0%
!!! TCATGGTTAGTCTTTTGGGA+TGG + chr4.4:14458368-14458387 MS.gene08926:intron 40.0%
!!! TTTTTCAAGACATGGAGGAC+TGG - chr4.4:14460686-14460705 None:intergenic 40.0%
AAAGGACAAGCCTATTGGGT+GGG - chr4.4:14458176-14458195 None:intergenic 45.0%
AAGGAGCTAACTGGGTCAAT+GGG + chr4.4:14459440-14459459 MS.gene08926:intron 45.0%
AATACCAATAGTACCTGGGG+AGG - chr4.4:14457707-14457726 None:intergenic 45.0%
AATGGTGAAGATGGTGAACC+TGG - chr4.4:14457562-14457581 None:intergenic 45.0%
ACCCAATAGGCTTGTCCTTT+GGG + chr4.4:14458176-14458195 MS.gene08926:intron 45.0%
ACTGGAGTAACATCCTCCTA+GGG + chr4.4:14458430-14458449 MS.gene08926:intron 45.0%
ATAGGATTCTCCCACCCAAT+AGG + chr4.4:14458163-14458182 MS.gene08926:intron 45.0%
ATCCCAAAGGACAAGCCTAT+TGG - chr4.4:14458181-14458200 None:intergenic 45.0%
ATGATGAGCTGGCAGAAAAG+GGG + chr4.4:14459623-14459642 MS.gene08926:intron 45.0%
ATGGTGAAGATGGTGAACCT+GGG - chr4.4:14457561-14457580 None:intergenic 45.0%
ATTGAAGGATGGTTGGAGTC+CGG + chr4.4:14460223-14460242 MS.gene08926:CDS 45.0%
CAAGGAAGAATATGCCACCT+TGG - chr4.4:14457652-14457671 None:intergenic 45.0%
CACTTTCACATGGTGCAGAA+CGG + chr4.4:14458903-14458922 MS.gene08926:intron 45.0%
CAGAATGCTCTCTCAACTCA+TGG + chr4.4:14458351-14458370 MS.gene08926:intron 45.0%
CAGGTGATCACACGTGATAA+TGG - chr4.4:14459127-14459146 None:intergenic 45.0%
CCATCTTCACCATTCAGCTT+AGG + chr4.4:14457568-14457587 MS.gene08926:intron 45.0%
CCCAAACAACCTAAGCTGAA+TGG - chr4.4:14457580-14457599 None:intergenic 45.0%
CCTAAGCTGAATGGTGAAGA+TGG - chr4.4:14457571-14457590 None:intergenic 45.0%
CTTCGGATCATCACAAAACG+GGG + chr4.4:14458862-14458881 MS.gene08926:intron 45.0%
GAATGATGAGCTGGCAGAAA+AGG + chr4.4:14459621-14459640 MS.gene08926:intron 45.0%
GACCCCTAAACTGCTAAAGT+GGG + chr4.4:14458616-14458635 MS.gene08926:intron 45.0%
GCAAGAAGAGAATGATGAGC+TGG + chr4.4:14459612-14459631 MS.gene08926:intron 45.0%
GCCGAATAAATCTGGTGAAC+AGG + chr4.4:14458969-14458988 MS.gene08926:intron 45.0%
GGCTTGAAAGGATAGTCAGT+AGG - chr4.4:14457686-14457705 None:intergenic 45.0%
GTTATGCTTCACCCCTTCTA+TGG + chr4.4:14458485-14458504 MS.gene08926:intron 45.0%
GTTGAGAGAAGACATGCTAC+AGG - chr4.4:14460001-14460020 None:intergenic 45.0%
TAAGGGAGCAAGTGAGTCTT+CGG + chr4.4:14458845-14458864 MS.gene08926:intron 45.0%
TAGAGAAGAGTCCATCCCAA+AGG - chr4.4:14458194-14458213 None:intergenic 45.0%
TATTGGGTGGGAGAATCCTA+TGG - chr4.4:14458164-14458183 None:intergenic 45.0%
TCCCAAAGGACAAGCCTATT+GGG - chr4.4:14458180-14458199 None:intergenic 45.0%
TGACCCCTAAACTGCTAAAG+TGG + chr4.4:14458615-14458634 MS.gene08926:intron 45.0%
TGGTATCCCCATCCATAGAA+GGG - chr4.4:14458500-14458519 None:intergenic 45.0%
TTATTGAGAGCTTGCCGAGT+AGG + chr4.4:14458244-14458263 MS.gene08926:intron 45.0%
TTCGGATCATCACAAAACGG+GGG + chr4.4:14458863-14458882 MS.gene08926:intron 45.0%
TTGGTATCCCCATCCATAGA+AGG - chr4.4:14458501-14458520 None:intergenic 45.0%
! AATAGGCTTGTCCTTTGGGA+TGG + chr4.4:14458180-14458199 MS.gene08926:intron 45.0%
! ACTGTGTTTCTACTCAACCC+TGG - chr4.4:14458730-14458749 None:intergenic 45.0%
! GGAGAGTGGACTCAAATAAG+AGG - chr4.4:14459258-14459277 None:intergenic 45.0%
! TTATCAATCTGGCTTCCCCT+AGG - chr4.4:14458449-14458468 None:intergenic 45.0%
! TTGGTGTTTGCTTTGGCATG+TGG + chr4.4:14457755-14457774 MS.gene08926:intron 45.0%
!! AAAGGGGCATTTGGCATCAA+AGG + chr4.4:14458997-14459016 MS.gene08926:intron 45.0%
!! CATGAGTTGAGAGAGCATTC+TGG - chr4.4:14458353-14458372 None:intergenic 45.0%
!! GGTGTTGTTAATCCTAGTGG+TGG + chr4.4:14458584-14458603 MS.gene08926:intron 45.0%
!!! GCTGCTTTTTCAAGACATGG+AGG - chr4.4:14460691-14460710 None:intergenic 45.0%
ACAACCTCAGTGTCTGCTTC+TGG + chr4.4:14457424-14457443 MS.gene08926:CDS 50.0%
ACAGAGAACAGAGGAGAACC+CGG + chr4.4:14458765-14458784 MS.gene08926:intron 50.0%
ACCTGATGGCCGTGTTAGTA+TGG + chr4.4:14460196-14460215 MS.gene08926:CDS 50.0%
CAAAGGACAAGCCTATTGGG+TGG - chr4.4:14458177-14458196 None:intergenic 50.0%
CACCCAATAGGCTTGTCCTT+TGG + chr4.4:14458175-14458194 MS.gene08926:intron 50.0%
CACTGCAACGTAGAACCTGA+TGG + chr4.4:14460182-14460201 MS.gene08926:CDS 50.0%
CACTGGATCGCCACCATTAT+TGG + chr4.4:14457532-14457551 MS.gene08926:CDS 50.0%
CAGCAGAACAATGAGGAGGA+GGG - chr4.4:14457489-14457508 None:intergenic 50.0%
CATCAGGTTCTACGTTGCAG+TGG - chr4.4:14460184-14460203 None:intergenic 50.0%
CATTGTTCTGCTGGTCCCAA+GGG + chr4.4:14457496-14457515 MS.gene08926:CDS 50.0%
CCTGATGGCCGTGTTAGTAT+GGG + chr4.4:14460197-14460216 MS.gene08926:CDS 50.0%
CTGGAGTAACATCCTCCTAG+GGG + chr4.4:14458431-14458450 MS.gene08926:intron 50.0%
CTTCACCCCTTCTATGGATG+GGG + chr4.4:14458491-14458510 MS.gene08926:intron 50.0%
CTTTCCAGAAGCAGACACTG+AGG - chr4.4:14457431-14457450 None:intergenic 50.0%
GAAGCAGACACTGAGGTTGT+CGG - chr4.4:14457424-14457443 None:intergenic 50.0%
GAAGGAGCTAACTGGGTCAA+TGG + chr4.4:14459439-14459458 MS.gene08926:intron 50.0%
GACTGGAGTAACATCCTCCT+AGG + chr4.4:14458429-14458448 MS.gene08926:intron 50.0%
GCAGACAATGCTGTTGTTCC+TGG + chr4.4:14460912-14460931 MS.gene08926:intron 50.0%
GCATAGCTCTCAGCTGTATC+AGG + chr4.4:14459755-14459774 MS.gene08926:intron 50.0%
GCTTCACCCCTTCTATGGAT+GGG + chr4.4:14458490-14458509 MS.gene08926:intron 50.0%
GGTATCCCCATCCATAGAAG+GGG - chr4.4:14458499-14458518 None:intergenic 50.0%
GTAGGAACACCTTACCAAGG+TGG + chr4.4:14457635-14457654 MS.gene08926:intron 50.0%
TCATTGTTCTGCTGGTCCCA+AGG + chr4.4:14457495-14457514 MS.gene08926:CDS 50.0%
TGCTTCACCCCTTCTATGGA+TGG + chr4.4:14458489-14458508 MS.gene08926:intron 50.0%
TGGTGAAGATGGTGAACCTG+GGG - chr4.4:14457560-14457579 None:intergenic 50.0%
TTCAAGACATGGAGGACTGG+AGG - chr4.4:14460683-14460702 None:intergenic 50.0%
TTGCTTCGAAAGTGGGAGAG+TGG - chr4.4:14459272-14459291 None:intergenic 50.0%
TTGGGACCAGCAGAACAATG+AGG - chr4.4:14457496-14457515 None:intergenic 50.0%
! TATTGGGATTGGGGTAGTGG+AGG + chr4.4:14459671-14459690 MS.gene08926:intron 50.0%
! TGAACCTGGGGTGCCAATAA+TGG - chr4.4:14457548-14457567 None:intergenic 50.0%
!! ATGGTAGTGGTGACGACTTC+CGG - chr4.4:14458787-14458806 None:intergenic 50.0%
AGTACCTGGGGAGGCTTGAA+AGG - chr4.4:14457698-14457717 None:intergenic 55.0%
CAAGCCTCCCCAGGTACTAT+TGG + chr4.4:14457700-14457719 MS.gene08926:intron 55.0%
CCAGCAGAACAATGAGGAGG+AGG - chr4.4:14457490-14457509 None:intergenic 55.0%
CCCATACTAACACGGCCATC+AGG - chr4.4:14460200-14460219 None:intergenic 55.0%
CCTCCTCCTCATTGTTCTGC+TGG + chr4.4:14457487-14457506 MS.gene08926:CDS 55.0%
CTATCCTTTCAAGCCTCCCC+AGG + chr4.4:14457691-14457710 MS.gene08926:CDS 55.0%
CTGGTGAACAGGGGGTGAAA+GGG + chr4.4:14458980-14458999 MS.gene08926:intron 55.0%
GAACTTCTTCCTCCTCCACC+TGG - chr4.4:14457385-14457404 None:intergenic 55.0%
GAGAGCTTGCCGAGTAGGAT+AGG + chr4.4:14458249-14458268 MS.gene08926:intron 55.0%
GATCATCACAAAACGGGGGC+AGG + chr4.4:14458867-14458886 MS.gene08926:intron 55.0%
GGACCAGCAGAACAATGAGG+AGG - chr4.4:14457493-14457512 None:intergenic 55.0%
GGCATCAAAGGTGGCTGTTG+TGG + chr4.4:14459009-14459028 MS.gene08926:intron 55.0%
TCTGGTGAACAGGGGGTGAA+AGG + chr4.4:14458979-14458998 MS.gene08926:intron 55.0%
TGGTGAACAGGGGGTGAAAG+GGG + chr4.4:14458981-14459000 MS.gene08926:intron 55.0%
! ACCTGGGGTGCCAATAATGG+TGG - chr4.4:14457545-14457564 None:intergenic 55.0%
! GGGGCATTTGGCATCAAAGG+TGG + chr4.4:14459000-14459019 MS.gene08926:intron 55.0%
! GTTTGGTAAGGCGATGGGCT+TGG + chr4.4:14458080-14458099 MS.gene08926:intron 55.0%
! TAAGGCGATGGGCTTGGCTT+AGG + chr4.4:14458086-14458105 MS.gene08926:intron 55.0%
! TCAATCTGGCTTCCCCTAGG+AGG - chr4.4:14458446-14458465 None:intergenic 55.0%
!! GATTGGGGTAGTGGAGGAAG+GGG + chr4.4:14459677-14459696 MS.gene08926:intron 55.0%
!! GGATTGGGGTAGTGGAGGAA+GGG + chr4.4:14459676-14459695 MS.gene08926:intron 55.0%
!! TGGTAGTGGTGACGACTTCC+GGG - chr4.4:14458786-14458805 None:intergenic 55.0%
CATCACAAAACGGGGGCAGG+AGG + chr4.4:14458870-14458889 MS.gene08926:intron 60.0%
GCCACCATTATTGGCACCCC+AGG + chr4.4:14457541-14457560 MS.gene08926:CDS 60.0%
GTCAACTGCTCCCCACCACT+AGG - chr4.4:14458599-14458618 None:intergenic 60.0%
!! CAGGGGGTGAAAGGGGCATT+TGG + chr4.4:14458988-14459007 MS.gene08926:intron 60.0%
!! GGGATTGGGGTAGTGGAGGA+AGG + chr4.4:14459675-14459694 MS.gene08926:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 14457376 14461013 14457376 ID=MS.gene08926
chr4.4 mRNA 14457376 14461013 14457376 ID=MS.gene08926.t1;Parent=MS.gene08926
chr4.4 exon 14457376 14457562 14457376 ID=MS.gene08926.t1.exon1;Parent=MS.gene08926.t1
chr4.4 CDS 14457376 14457562 14457376 ID=cds.MS.gene08926.t1;Parent=MS.gene08926.t1
chr4.4 exon 14457639 14457712 14457639 ID=MS.gene08926.t1.exon2;Parent=MS.gene08926.t1
chr4.4 CDS 14457639 14457712 14457639 ID=cds.MS.gene08926.t1;Parent=MS.gene08926.t1
chr4.4 exon 14460158 14460305 14460158 ID=MS.gene08926.t1.exon3;Parent=MS.gene08926.t1
chr4.4 CDS 14460158 14460305 14460158 ID=cds.MS.gene08926.t1;Parent=MS.gene08926.t1
chr4.4 exon 14460916 14461013 14460916 ID=MS.gene08926.t1.exon4;Parent=MS.gene08926.t1
chr4.4 CDS 14460916 14461013 14460916 ID=cds.MS.gene08926.t1;Parent=MS.gene08926.t1
Gene Sequence

>MS.gene08926

ATGATACCAGGTGGAGGAGGAAGAAGTTCAACATCATCATGGGCACCGACAACCTCAGTGTCTGCTTCTGGAAAGAGAATTCAAAGAGAAATGGTTGAACTCAACAACGACCCTCCTCCTCATTGTTCTGCTGGTCCCAAGGGTGATAATCTCTATCACTGGATCGCCACCATTATTGGCACCCCAGGTTCACCATCTTCACCATTCAGCTTAGGTTGTTTGGGTTCAGATTGAATTTATCATAAAGTTGTTTTTTTTTGTAGGAACACCTTACCAAGGTGGCATATTCTTCCTTGACATAATATTTCCTACTGACTATCCTTTCAAGCCTCCCCAGGTACTATTGGTATTTTTGCGGCTATTGTTTCTTTTTCTCAAGTTGGTGTTTGCTTTGGCATGTGGAAGAATGTTAGCATGAAATGAAACTGTATTTTTATATAGATTTAATCTTTATGCTCCGTCGGTATAAAATTATTTTACATGTGCATCTAATAATGTGTTGTTACTTCATTTAATGTGATTGAAAACATGAGTTGTCATAATTATTAATTAACGCGAGAACACATTATTGGATGCATGTGTAAAATAACTTTACACTGTCAGTGTATAGAAATTAAAATCTTTTTATATAATGAATGCGTTAAGTTCCTTGAAGTTAATGCTTATTACTAATTGACATAAAGTTGTAATTCTATATACATTTAGTTTGGTAAGGCGATGGGCTTGGCTTAGGCTTATATTGTGCACCACATTGAGTAAAGCTAGAGAATGAATTGATACTTAAGCCATAGGATTCTCCCACCCAATAGGCTTGTCCTTTGGGATGGACTCTTCTCTAGAGCTCAAGTCATACAAACACTTGATAGTTTTATTGAGAGCTTGCCGAGTAGGATAGGTAAGCAAAATAGGAACAAACAGGAAAATGGCTACCTATACCAAAAGGGTCAAGAATGAATGTAATCATGGGTGGTTAGCCAGAATGCTCTCTCAACTCATGGTTAGTCTTTTGGGATGGTTTTACTTGTGGGCTCAAGTCATAATTCTTAAAGGCAAGACTGGAGTAACATCCTCCTAGGGGAAGCCAGATTGATAAAGTGAACTATTCTACAGTTATGCTTCACCCCTTCTATGGATGGGGATACCAAGCATAATTCTTGGAAAATGCATAAAATTGTTTTTGTAATCCTTCTCTTTTTCATAAAGGGATTGGTGTTGTTAATCCTAGTGGTGGGGAGCAGTTGACCCCTAAACTGCTAAAGTGGGATAGTAGATAGAGGGAAAGCCTCTATTGTGAAGACTAGAAAGTAGTTTAGGAAGGCTTCACTTTGGGAAGTTTATGGTTGAGATGATACCAGGGTTGAGTAGAAACACAGTAGAATTAAATGAGGAACAGAGAACAGAGGAGAACCCGGAAGTCGTCACCACTACCATAAAACCTAGTAGCCATTTCTGGAAGAAAACAAAGAAGGTAAGGGAGCAAGTGAGTCTTCGGATCATCACAAAACGGGGGCAGGAGGAAGTGAGTTTCACTTTCACATGGTGCAGAACGGCTGAAGCTGCTGACCAAAAATATTCAGGGAAAATGACCAAAAAGCCGAATAAATCTGGTGAACAGGGGGTGAAAGGGGCATTTGGCATCAAAGGTGGCTGTTGTGGCAGTCAACACAGTTTTCAGTCGAAATAGCTACTCTTGTATAATGCCAATGTGACATATCAGCTGTAAGTGTCGCAGCTGCGCTGCTGCAATTCCATTATCACGTGTGATCACCTGCTATTGACAACATAGATAGGGATAGTATGGTAGCTGATATTACAAGATATTTAGTCACTGGGTGGTCTGTTATTGTGTTTAACAATTTTGAACTATTGAATCTTACATCCTCTTATTTGAGTCCACTCTCCCACTTTCGAAGCAATAAACAATATATCATTTTGTATGCATTCAACTAATATTGACTGAAAAAAAAGGTTATTCACTGGCTTGAATGAACATATTTTTTTGCTTCTGATTTGATATAGGGAAAGTTCACTGGCTAACTGTTTTGTTCAAGATCATGTCATTTGAAGGAGCTAACTGGGTCAATGGGAACTTTCAGTTGTTTTTCAAGTAGAATTTAATAAATTGGTTACTTGTATTTGATAGAGCTAGAAATGAGAGTTTAGGTGTTGATGACGTGTCTAGTCATCCACACCATGTACCCAAAATATGGAGAGTGTATGCTAGGAAAAATAGAAAGCAAGAAGAGAATGATGAGCTGGCAGAAAAGGGGTGTGATGCGTGACTCACTTCTGTTATATTGGGATTGGGGTAGTGGAGGAAGGGGTCAGAAAAAGAATTCTTTTAGGAGCAGAGATTTGTGATATTCTTTGAGTCAGTGAGCATAGCTCTCAGCTGTATCAGGAAGTTTGCTTCCTTTGCTATTTTTCCTTTCTATCATTAATGAAATCCTCTCCATTTTATCTTTTCGATACTATTTGATGCTGTTACTGTGATTGAGTTTTAGTACCTATCAGTATTTGTATAAAATGCTTGTTTTTTTCTCCTTCTGAGCAAATCACTGTTACCTTCCCATTATGTAATTCTTCAAGTACAGTCCCTTTATTTTCAAAGCCTATAAACTTCCTGTAGCATGTCTTCTCTCAACTTTTCATAAACTTCTCTGTTTGAAGAGTTTGGTATAGGTTTAAAAAATAAAAAGGCAATATGCAGACAACAAAAAATTTATGGGGAGGTAAAAGTAATTTAATTGTTGTGTATTGCCTTGTTAAATTGAACTAGCAGGTAGTCTTCAGAACTCGCATTTACCACTGCAACGTAGAACCTGATGGCCGTGTTAGTATGGGAATATTGAAGGATGGTTGGAGTCCGGCACTAACAATTACTAAGGTGCTACTTGCTGTTAGATTACTTTTGACAAATCCCGACCCTTGTAAGTTTGTCTATTCTCTTCTTGAATGCTACTACCTTTGTCCCTATATCTAAGATCTCTTTAGTTAATGCACGAGAATTAAGAAAAATATTTCTATATTAAATTTGTCAACAATGTACAATCTCTTTTCAGAATTATCCATCAATTATTAAGAGAGATAAATGATTAGTCTTTTAATTTCCCCATTTAATTTAGGGTATGTATTTTTGTGAAAGATCACTAATGTATCTTGTAATTTGAAAATAATCTTACAAAAGGGAAAAGAAAAATTTACAAAGGAGTCTTACATACAGGGATGAAGGTTTACATGGTACTTGTATACTTAGAGCCTTTTGCTTCTGAATGCAAGAAAAGAGGAAATTATTGTATTATTACCTCCAGTCCTCCATGTCTTGAAAAAGCAGCATGGTTTAATAGGACACTCCGCTAATGATTATGTCTTTTAACACTGGATTCAATTAATTTTCAAACATGCAGTATTAGTAATACCAATATTTACATTTTGTTTGTATAGAAAGTAATAACTACACTTAAAATCAGCCGATACTCCAAGTAGCTTCTTCAAAAAAAAAAATGATCTTAGAATGTAAAGTTGTTTTCGTTGTTGCAGACAATGCTGTTGTTCCTGGCATTGCTCACTTATATTTGGGAGACAGAGCAAAACATGATGATATTGCTGCAGAATGGACTATCCGATTCGCCAAGTGA
Protein sequence

>MS.gene08926.t1

MIPGGGGRSSTSSWAPTTSVSASGKRIQREMVELNNDPPPHCSAGPKGDNLYHWIATIIGTPGTPYQGGIFFLDIIFPTDYPFKPPQVVFRTRIYHCNVEPDGRVSMGILKDGWSPALTITKVLLAVRLLLTNPDPYNAVVPGIAHLYLGDRAKHDDIAAEWTIRFAK