AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023529

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023529.t1 MTR_8g085690 98.810 168 2 0 1 168 1 168 2.15e-122 342
MS.gene023529.t1 MTR_7g116940 51.034 145 71 0 23 167 2 146 1.42e-55 172
MS.gene023529.t1 MTR_1g021150 51.034 145 71 0 23 167 2 146 4.93e-55 171
MS.gene023529.t1 MTR_5g075580 51.034 145 71 0 23 167 2 146 6.13e-55 170
MS.gene023529.t1 MTR_3g062450 50.345 145 72 0 23 167 2 146 2.65e-54 169
MS.gene023529.t1 MTR_4g073240 51.034 145 71 0 23 167 2 146 4.02e-54 168
MS.gene023529.t1 MTR_8g071040 49.655 145 73 0 23 167 2 146 5.95e-54 168
MS.gene023529.t1 MTR_7g116940 48.684 152 71 1 23 167 2 153 1.53e-52 164
MS.gene023529.t1 MTR_1g021150 51.613 124 60 0 44 167 31 154 3.17e-45 146
MS.gene023529.t1 MTR_5g075580 52.137 117 56 0 51 167 1 117 3.33e-43 139
MS.gene023529.t1 MTR_4g073240 51.282 117 57 0 51 167 1 117 5.87e-42 136
MS.gene023529.t1 MTR_7g116940 53.922 102 47 0 23 124 2 103 7.50e-40 131
MS.gene023529.t1 MTR_2g078010 39.161 143 87 0 25 167 8 150 1.53e-34 119
MS.gene023529.t1 MTR_3g098780 42.568 148 77 4 26 168 6 150 2.89e-31 111
MS.gene023529.t1 MTR_2g078010 39.231 130 79 0 25 154 8 137 5.07e-31 109
MS.gene023529.t1 MTR_3g098780 42.568 148 77 4 26 168 30 174 6.37e-31 111
MS.gene023529.t1 MTR_2g078010 35.669 157 87 1 25 167 8 164 1.57e-30 109
MS.gene023529.t1 MTR_4g108080 34.091 132 87 0 25 156 7 138 2.32e-27 100
MS.gene023529.t1 MTR_8g468530 34.091 132 87 0 25 156 23 154 7.07e-27 99.8
MS.gene023529.t1 MTR_2g078010 43.564 101 57 0 25 125 8 108 3.25e-26 96.3
MS.gene023529.t1 MTR_1g095510 43.443 122 65 2 15 135 37 155 5.44e-26 98.2
MS.gene023529.t1 MTR_1g095510 43.333 120 64 2 15 133 37 153 3.07e-25 95.9
MS.gene023529.t1 MTR_4g076200 37.097 124 78 0 25 148 35 158 7.41e-25 95.1
MS.gene023529.t1 MTR_1g095510 46.237 93 50 0 43 135 9 101 2.68e-24 92.4
MS.gene023529.t1 MTR_4g073240 48.148 81 42 0 87 167 4 84 3.13e-24 90.5
MS.gene023529.t1 MTR_4g108080 37.037 108 68 0 25 132 7 114 8.25e-24 90.5
MS.gene023529.t1 MTR_5g009020 36.290 124 79 0 25 148 35 158 3.04e-23 90.9
MS.gene023529.t1 MTR_4g076200 38.679 106 65 0 43 148 12 117 9.71e-23 88.2
MS.gene023529.t1 MTR_3g110110 36.667 120 73 2 20 136 1 120 5.82e-20 81.6
MS.gene023529.t1 MTR_5g016630 36.111 108 67 1 50 155 37 144 1.63e-19 80.5
MS.gene023529.t1 MTR_4g094872 37.963 108 65 1 50 155 37 144 2.24e-19 80.1
MS.gene023529.t1 MTR_8g076490 36.207 116 70 3 9 123 4 116 5.43e-18 76.6
MS.gene023529.t1 MTR_2g096690 37.374 99 49 1 50 135 33 131 1.02e-17 75.9
MS.gene023529.t1 MTR_2g096690 37.374 99 49 1 50 135 33 131 1.03e-17 76.3
MS.gene023529.t1 MTR_7g087590 31.034 116 80 0 25 140 13 128 1.30e-17 77.8
MS.gene023529.t1 MTR_4g063490 31.624 117 67 1 49 152 32 148 6.46e-17 73.9
MS.gene023529.t1 MTR_4g108080 29.825 114 72 1 51 156 25 138 9.37e-17 73.2
MS.gene023529.t1 MTR_5g021260 33.613 119 71 3 9 123 2 116 2.00e-16 72.4
MS.gene023529.t1 MTR_2g096690 50.820 61 30 0 50 110 33 93 1.08e-14 67.0
MS.gene023529.t1 MTR_5g019480 29.851 134 88 3 9 138 16 147 1.06e-13 65.9
MS.gene023529.t1 MTR_5g019480 29.851 134 88 3 9 138 19 150 1.28e-13 65.9
MS.gene023529.t1 MTR_8g028920 29.268 123 85 2 48 168 26 148 1.76e-13 65.5
MS.gene023529.t1 MTR_7g451800 32.836 134 79 4 17 139 30 163 1.89e-13 67.0
MS.gene023529.t1 MTR_7g047620 32.836 134 79 4 17 139 30 163 1.89e-13 67.0
MS.gene023529.t1 MTR_8g098595 28.455 123 86 2 48 168 11 133 4.60e-13 63.9
MS.gene023529.t1 MTR_4g086440 32.540 126 75 3 21 136 33 158 4.66e-13 65.9
MS.gene023529.t1 MTR_7g047570 32.090 134 80 4 17 139 30 163 7.49e-13 65.5
MS.gene023529.t1 MTR_7g451770 32.090 134 80 4 17 139 30 163 7.49e-13 65.5
MS.gene023529.t1 MTR_2g013650 33.600 125 71 4 24 137 681 804 7.83e-13 65.9
MS.gene023529.t1 MTR_8g028920 32.075 106 70 2 65 168 4 109 8.53e-13 62.8
MS.gene023529.t1 MTR_4g020620 32.800 125 72 4 24 137 628 751 1.90e-12 64.7
MS.gene023529.t1 MTR_4g106690 31.746 126 78 4 48 168 26 148 3.11e-12 62.0
MS.gene023529.t1 MTR_4g088835 36.559 93 47 4 56 137 703 794 3.45e-12 63.9
MS.gene023529.t1 MTR_4g020620 32.800 125 72 4 24 137 570 693 4.65e-12 63.5
MS.gene023529.t1 MTR_1g112730 30.345 145 80 5 4 137 844 978 7.45e-12 63.2
MS.gene023529.t1 MTR_8g023380 27.907 129 76 3 22 141 5 125 8.44e-12 61.6
MS.gene023529.t1 MTR_0332s0040 34.234 111 60 5 55 154 187 295 1.13e-11 62.4
MS.gene023529.t1 MTR_0274s0030 32.258 124 74 3 24 137 113 236 1.33e-11 62.0
MS.gene023529.t1 MTR_4g007210 40.000 90 43 4 56 134 112 201 5.06e-11 60.5
MS.gene023529.t1 MTR_1g092465 36.082 97 42 4 56 137 267 358 5.56e-11 60.1
MS.gene023529.t1 MTR_1g092460 35.052 97 43 4 56 137 208 299 7.93e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023529.t1 AT3G13550 66.851 181 47 1 1 168 2 182 6.80e-87 253
MS.gene023529.t1 AT3G13550 67.785 149 35 1 1 136 2 150 1.31e-69 208
MS.gene023529.t1 AT3G08690 51.034 145 71 0 23 167 2 146 4.56e-56 173
MS.gene023529.t1 AT3G08690 51.034 145 71 0 23 167 2 146 4.56e-56 173
MS.gene023529.t1 AT2G16740 51.724 145 70 0 23 167 2 146 9.38e-56 172
MS.gene023529.t1 AT1G64230 51.724 145 70 0 23 167 2 146 2.27e-55 171
MS.gene023529.t1 AT1G64230 51.724 145 70 0 23 167 2 146 2.27e-55 171
MS.gene023529.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene023529.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene023529.t1 AT5G41700 51.034 145 71 0 23 167 2 146 9.11e-55 170
MS.gene023529.t1 AT5G56150 50.345 145 72 0 23 167 2 146 1.41e-54 169
MS.gene023529.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene023529.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene023529.t1 AT5G53300 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene023529.t1 AT4G27960 49.655 145 73 0 23 167 2 146 9.87e-54 167
MS.gene023529.t1 AT4G27960 48.649 148 76 0 20 167 29 176 9.24e-53 166
MS.gene023529.t1 AT5G41700 50.000 146 72 1 23 167 2 147 7.22e-52 162
MS.gene023529.t1 AT1G64230 48.052 154 71 1 23 167 2 155 3.55e-51 161
MS.gene023529.t1 AT3G08700 47.260 146 76 1 23 167 2 147 2.52e-49 156
MS.gene023529.t1 AT3G08700 47.260 146 76 1 23 167 2 147 2.52e-49 156
MS.gene023529.t1 AT1G64230 39.572 187 71 1 23 167 2 188 4.18e-46 149
MS.gene023529.t1 AT1G64230 39.572 187 71 1 23 167 2 188 4.18e-46 149
MS.gene023529.t1 AT5G41700 52.427 103 49 0 23 125 2 104 8.91e-39 129
MS.gene023529.t1 AT5G56150 50.000 108 54 0 23 130 2 109 1.18e-38 128
MS.gene023529.t1 AT5G53300 51.376 109 49 1 23 131 2 106 5.70e-38 126
MS.gene023529.t1 AT1G36340 50.400 125 62 0 43 167 28 152 1.99e-36 124
MS.gene023529.t1 AT1G36340 50.400 125 62 0 43 167 28 152 1.99e-36 124
MS.gene023529.t1 AT1G78870 40.559 143 85 0 25 167 8 150 9.55e-36 122
MS.gene023529.t1 AT1G16890 39.161 143 87 0 25 167 8 150 1.23e-34 119
MS.gene023529.t1 AT1G16890 39.189 148 85 1 25 167 12 159 2.93e-33 115
MS.gene023529.t1 AT5G50870 38.621 145 87 2 26 168 6 150 3.12e-29 106
MS.gene023529.t1 AT1G78870 42.727 110 63 0 58 167 8 117 4.98e-28 101
MS.gene023529.t1 AT1G14400 34.028 144 90 1 25 163 7 150 6.80e-28 102
MS.gene023529.t1 AT1G14400 34.028 144 90 1 25 163 7 150 6.80e-28 102
MS.gene023529.t1 AT1G16890 41.818 110 64 0 58 167 8 117 1.73e-27 100
MS.gene023529.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene023529.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene023529.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene023529.t1 AT2G02760 34.091 132 87 0 25 156 7 138 3.29e-27 100
MS.gene023529.t1 AT1G78870 44.554 101 56 0 25 125 8 108 6.66e-27 98.2
MS.gene023529.t1 AT5G62540 34.532 139 91 0 23 161 5 143 1.12e-26 99.0
MS.gene023529.t1 AT5G50870 37.821 156 84 4 26 168 6 161 2.23e-26 99.8
MS.gene023529.t1 AT1G78870 42.342 111 63 1 58 167 8 118 3.21e-26 96.7
MS.gene023529.t1 AT3G24515 37.821 156 84 3 26 168 10 165 1.96e-25 100
MS.gene023529.t1 AT3G20060 37.500 128 78 1 10 135 22 149 6.81e-24 92.4
MS.gene023529.t1 AT2G32790 34.839 155 100 1 15 168 22 176 1.35e-23 91.7
MS.gene023529.t1 AT1G50490 36.765 136 84 1 15 148 26 161 3.14e-23 90.9
MS.gene023529.t1 AT3G24515 32.044 181 85 3 26 168 10 190 6.56e-22 91.3
MS.gene023529.t1 AT3G20060 39.583 96 58 0 40 135 9 104 1.15e-20 82.8
MS.gene023529.t1 AT5G25760 37.500 120 72 2 20 136 1 120 1.25e-20 83.6
MS.gene023529.t1 AT5G25760 37.500 120 72 2 20 136 1 120 1.25e-20 83.6
MS.gene023529.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene023529.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene023529.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene023529.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.66e-19 81.3
MS.gene023529.t1 AT3G57870 39.423 104 61 1 50 151 38 141 6.34e-19 79.0
MS.gene023529.t1 AT3G46460 37.374 99 49 1 50 135 33 131 5.97e-18 76.6
MS.gene023529.t1 AT1G75440 36.975 119 65 4 11 123 2 116 4.47e-17 74.3
MS.gene023529.t1 AT5G59300 35.354 99 51 1 50 135 33 131 5.67e-16 71.6
MS.gene023529.t1 AT3G55380 29.661 118 70 1 50 154 34 151 1.81e-15 70.1
MS.gene023529.t1 AT4G36410 32.773 119 70 4 9 123 4 116 2.95e-15 69.7
MS.gene023529.t1 AT5G42990 34.167 120 69 4 11 124 2 117 5.85e-15 68.9
MS.gene023529.t1 AT1G45050 35.043 117 72 3 11 124 2 117 6.44e-15 68.6
MS.gene023529.t1 AT2G46030 34.127 126 75 4 48 168 26 148 1.41e-14 68.2
MS.gene023529.t1 AT2G46030 34.127 126 75 4 48 168 26 148 1.41e-14 68.2
MS.gene023529.t1 AT2G46030 34.127 126 75 4 48 168 29 151 2.48e-14 67.8
MS.gene023529.t1 AT2G46030 34.127 126 75 4 48 168 29 151 2.48e-14 67.8
MS.gene023529.t1 AT2G46030 30.128 156 98 5 18 168 71 220 6.30e-14 67.8
MS.gene023529.t1 AT4G36800 31.387 137 86 5 7 138 15 148 1.93e-13 65.1
MS.gene023529.t1 AT4G36800 31.387 137 86 5 7 138 15 148 1.93e-13 65.1
MS.gene023529.t1 AT1G17280 26.772 127 86 1 22 141 5 131 3.84e-13 65.5
MS.gene023529.t1 AT5G41340 30.081 123 84 2 48 168 26 148 4.70e-13 64.3
MS.gene023529.t1 AT3G55380 30.769 104 59 1 50 140 34 137 1.04e-12 63.5
MS.gene023529.t1 AT1G63800 29.268 123 85 2 48 168 11 133 1.08e-12 63.2
MS.gene023529.t1 AT1G63800 29.268 123 85 2 48 168 26 148 1.09e-12 63.2
MS.gene023529.t1 AT2G18600 31.387 137 85 6 8 138 16 149 1.51e-12 62.8
MS.gene023529.t1 AT2G18600 31.387 137 85 6 8 138 16 149 1.51e-12 62.8
MS.gene023529.t1 AT5G41340 33.333 105 68 2 66 168 9 113 2.01e-12 62.0
MS.gene023529.t1 AT5G50430 27.907 129 76 3 22 141 5 125 5.67e-12 62.4
MS.gene023529.t1 AT5G50430 27.907 129 76 3 22 141 5 125 5.67e-12 62.4
MS.gene023529.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene023529.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene023529.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene023529.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene023529.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene023529.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene023529.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene023529.t1 AT1G17280 27.907 129 76 3 22 141 5 125 5.84e-12 62.0
MS.gene023529.t1 AT3G15355 32.558 129 67 4 24 137 334 457 1.30e-11 62.4
MS.gene023529.t1 AT1G53025 31.250 128 68 4 25 137 274 396 3.83e-11 60.8
MS.gene023529.t1 AT3G46460 34.146 82 41 1 67 135 8 89 4.36e-11 57.8
MS.gene023529.t1 AT3G46460 34.146 82 41 1 67 135 8 89 4.36e-11 57.8
MS.gene023529.t1 AT1G53025 31.250 128 68 4 25 137 274 396 5.02e-11 60.5

Find 55 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTGCTCACTTATATT+TGG 0.167783 4.4:+14357823 MS.gene023529:CDS
CACTGGATCGCCACCATTAT+TGG 0.225414 4.4:+14354416 MS.gene023529:CDS
ACCTGATGGCCGTGTTAGTA+TGG 0.244162 4.4:+14357089 MS.gene023529:CDS
GGCATTGCTCACTTATATTT+GGG 0.312742 4.4:+14357824 MS.gene023529:CDS
ACAACCTCAGTGTCTGCTTC+TGG 0.313526 4.4:+14354308 MS.gene023529:CDS
GCAGACAATGCTGTTGTTCC+TGG 0.324492 4.4:+14357803 MS.gene023529:intron
CCTCCTCCTCATTGTTCTGC+TGG 0.384460 4.4:+14354371 MS.gene023529:CDS
TGAACCTGGGGTGCCAATAA+TGG 0.405631 4.4:-14354429 None:intergenic
ATATTATTCACTTGGCGAAT+CGG 0.441674 4.4:-14357889 None:intergenic
TCATTGTTCTGCTGGTCCCA+AGG 0.444109 4.4:+14354379 MS.gene023529:CDS
CTTATATCATATTATTCACT+TGG 0.451971 4.4:-14357897 None:intergenic
AAAGAGAATTCAAAGAGAAA+TGG 0.471148 4.4:+14354331 MS.gene023529:CDS
TGGGAATATTGAAGGATGGT+TGG 0.488902 4.4:+14357109 MS.gene023529:CDS
CCCATACTAACACGGCCATC+AGG 0.491401 4.4:-14357090 None:intergenic
GAACTTCTTCCTCCTCCACC+TGG 0.495695 4.4:-14354266 None:intergenic
CATTGTTCTGCTGGTCCCAA+GGG 0.498720 4.4:+14354380 MS.gene023529:CDS
ATTGAAGGATGGTTGGAGTC+CGG 0.503896 4.4:+14357116 MS.gene023529:CDS
GTGATAGAGATTATCACCCT+TGG 0.504556 4.4:-14354396 None:intergenic
AGTACCTGGGGAGGCTTGAA+AGG 0.507084 4.4:-14354588 None:intergenic
AAGAATATGCCACCTTGGTA+AGG 0.510733 4.4:-14354537 None:intergenic
GCCACCATTATTGGCACCCC+AGG 0.511138 4.4:+14354425 MS.gene023529:CDS
TAGACAAACTTACAAGGGTC+GGG 0.513888 4.4:-14357189 None:intergenic
TGTTAGTATGGGAATATTGA+AGG 0.515562 4.4:+14357101 MS.gene023529:CDS
TGATAGAGATTATCACCCTT+GGG 0.525358 4.4:-14354395 None:intergenic
ACCTTAGTAATTGTTAGTGC+CGG 0.526027 4.4:-14357135 None:intergenic
CTATCCTTTCAAGCCTCCCC+AGG 0.527880 4.4:+14354584 MS.gene023529:CDS
GAAGAAGTTCAACATCATCA+TGG 0.530685 4.4:+14354279 MS.gene023529:CDS
CCAGCAGAACAATGAGGAGG+AGG 0.534364 4.4:-14354371 None:intergenic
AAATATAAGTGAGCAATGCC+AGG 0.535276 4.4:-14357821 None:intergenic
ATAGACAAACTTACAAGGGT+CGG 0.537656 4.4:-14357190 None:intergenic
AGGGTGATAATCTCTATCAC+TGG 0.546775 4.4:+14354399 MS.gene023529:CDS
GTGATGATACCAGGTGGAGG+AGG 0.546811 4.4:+14354257 None:intergenic
CCTGATGGCCGTGTTAGTAT+GGG 0.550021 4.4:+14357090 MS.gene023529:CDS
TCCGGCACTAACAATTACTA+AGG 0.562618 4.4:+14357134 MS.gene023529:CDS
GAAGCAGACACTGAGGTTGT+CGG 0.570928 4.4:-14354305 None:intergenic
ATGATGATATTGCTGCAGAA+TGG 0.574575 4.4:+14357861 MS.gene023529:CDS
CAAGGAAGAATATGCCACCT+TGG 0.575948 4.4:-14354542 None:intergenic
AAGAAGTTCAACATCATCAT+GGG 0.593129 4.4:+14354280 MS.gene023529:CDS
AGTATGGGAATATTGAAGGA+TGG 0.608029 4.4:+14357105 MS.gene023529:CDS
GGAGGTGAAGTGATGATACC+AGG 0.617355 4.4:+14354248 None:intergenic
CAGTAGGAAATATTATGTCA+AGG 0.623127 4.4:-14354560 None:intergenic
AATACCAATAGTACCTGGGG+AGG 0.638913 4.4:-14354597 None:intergenic
CACTGCAACGTAGAACCTGA+TGG 0.643178 4.4:+14357075 MS.gene023529:CDS
GAAGTGATGATACCAGGTGG+AGG 0.643516 4.4:+14354254 None:intergenic
CAGCAGAACAATGAGGAGGA+GGG 0.654094 4.4:-14354370 None:intergenic
CATCAGGTTCTACGTTGCAG+TGG 0.655107 4.4:-14357074 None:intergenic
TTTGTAGGAACACCTTACCA+AGG 0.659022 4.4:+14354525 MS.gene023529:intron
GGCTTGAAAGGATAGTCAGT+AGG 0.660032 4.4:-14354576 None:intergenic
CTTTCCAGAAGCAGACACTG+AGG 0.663553 4.4:-14354312 None:intergenic
TCAATATTCCCATACTAACA+CGG 0.686088 4.4:-14357098 None:intergenic
ACCTGGGGTGCCAATAATGG+TGG 0.689217 4.4:-14354426 None:intergenic
GGACCAGCAGAACAATGAGG+AGG 0.696711 4.4:-14354374 None:intergenic
GTAGGAACACCTTACCAAGG+TGG 0.698581 4.4:+14354528 MS.gene023529:intron
TTGGGACCAGCAGAACAATG+AGG 0.713885 4.4:-14354377 None:intergenic
GGTGAAGTGATGATACCAGG+TGG 0.731443 4.4:+14354251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGGTTTAAAAAATAAAA+AGG + chr4.4:14356946-14356965 MS.gene023529:intron 10.0%
!! AATTCTATATACATTTAGTT+TGG + chr4.4:14354956-14354975 MS.gene023529:intron 15.0%
!! TACAAACAAAATGTAAATAT+TGG - chr4.4:14357690-14357709 None:intergenic 15.0%
!! TTGAAAATAATCTTACAAAA+GGG + chr4.4:14357435-14357454 MS.gene023529:intron 15.0%
!! TTTGAAAATAATCTTACAAA+AGG + chr4.4:14357434-14357453 MS.gene023529:intron 15.0%
!! AATACATACCCTAAATTAAA+TGG - chr4.4:14357384-14357403 None:intergenic 20.0%
!! ATACATACCCTAAATTAAAT+GGG - chr4.4:14357383-14357402 None:intergenic 20.0%
!! TACTTGAAGAATTACATAAT+GGG - chr4.4:14356840-14356859 None:intergenic 20.0%
!! TCAAGTAGACTTTAATAAAT+TGG + chr4.4:14356372-14356391 MS.gene023529:intron 20.0%
!! TTAAAAGACATAATCATTAG+CGG - chr4.4:14357625-14357644 None:intergenic 20.0%
!! TTATCTCTCTTAATAATTGA+TGG - chr4.4:14357340-14357359 None:intergenic 20.0%
!!! ATAGTATCGAAAAGATAAAA+TGG - chr4.4:14356724-14356743 None:intergenic 20.0%
!!! CATTTTATACAAATACTGAT+AGG - chr4.4:14356778-14356797 None:intergenic 20.0%
!!! CTAATATTGACTGAAAAAAA+AGG + chr4.4:14356215-14356234 MS.gene023529:intron 20.0%
!!! GTAAAATAATTTTATACCGA+CGG - chr4.4:14354729-14354748 None:intergenic 20.0%
!!! TAATTTCCCCATTTAATTTA+GGG + chr4.4:14357373-14357392 MS.gene023529:intron 20.0%
!!! TATATACATTTAGTTTGGTA+AGG + chr4.4:14354961-14354980 MS.gene023529:intron 20.0%
!!! TTAATTTCCCCATTTAATTT+AGG + chr4.4:14357372-14357391 MS.gene023529:intron 20.0%
!!! TTATAGGCTTTGAAAATAAA+GGG - chr4.4:14356867-14356886 None:intergenic 20.0%
!!! TTTATAGGCTTTGAAAATAA+AGG - chr4.4:14356868-14356887 None:intergenic 20.0%
! AAACACAGTAGAATTAAATG+AGG + chr4.4:14355634-14355653 MS.gene023529:intron 25.0%
! AAAGAGAATTCAAAGAGAAA+TGG + chr4.4:14354331-14354350 MS.gene023529:CDS 25.0%
! AATAGTTCACTTTATCAATC+TGG - chr4.4:14355353-14355372 None:intergenic 25.0%
! ACTAAAGAGATCTTAGATAT+AGG - chr4.4:14357244-14357263 None:intergenic 25.0%
! AGTAATAAGCATTAACTTCA+AGG - chr4.4:14354919-14354938 None:intergenic 25.0%
! ATAGAAAGGAAAAATAGCAA+AGG - chr4.4:14356684-14356703 None:intergenic 25.0%
! ATTACAAGATATTTAGTCAC+TGG + chr4.4:14356078-14356097 MS.gene023529:intron 25.0%
! CAGACAACAAAAAATTTATG+GGG + chr4.4:14356976-14356995 MS.gene023529:intron 25.0%
! CTAAAGAGATCTTAGATATA+GGG - chr4.4:14357243-14357262 None:intergenic 25.0%
! GCAGACAACAAAAAATTTAT+GGG + chr4.4:14356975-14356994 MS.gene023529:intron 25.0%
! GGATTTCATTAATGATAGAA+AGG - chr4.4:14356698-14356717 None:intergenic 25.0%
! GGGAAAAGAAAAATTTACAA+AGG + chr4.4:14357455-14357474 MS.gene023529:intron 25.0%
! GTACTTGAAGAATTACATAA+TGG - chr4.4:14356841-14356860 None:intergenic 25.0%
! TACATACCCTAAATTAAATG+GGG - chr4.4:14357382-14357401 None:intergenic 25.0%
! TCAAGAATGAATGTAATCAT+GGG + chr4.4:14355213-14355232 MS.gene023529:intron 25.0%
! TCAATAAAACTATCAAGTGT+TGG - chr4.4:14355124-14355143 None:intergenic 25.0%
! TGAAAAAAAAGGTTATTCAC+TGG + chr4.4:14356226-14356245 MS.gene023529:intron 25.0%
! TGCAGACAACAAAAAATTTA+TGG + chr4.4:14356974-14356993 MS.gene023529:intron 25.0%
! TTACAAGATATTTAGTCACT+GGG + chr4.4:14356079-14356098 MS.gene023529:intron 25.0%
!! ATGATTATGTCTTTTAACAC+TGG + chr4.4:14357628-14357647 MS.gene023529:intron 25.0%
!! GTCAGAAAAAGAATTCTTTT+AGG + chr4.4:14356592-14356611 MS.gene023529:intron 25.0%
!! TCATTTTCCCTGAATATTTT+TGG - chr4.4:14355835-14355854 None:intergenic 25.0%
!! TTTGCTTCTGATTTGATATA+GGG + chr4.4:14356267-14356286 MS.gene023529:intron 25.0%
!!! AATCCTTCTCTTTTTCATAA+AGG + chr4.4:14355450-14355469 MS.gene023529:intron 25.0%
!!! ATCCTTCTCTTTTTCATAAA+GGG + chr4.4:14355451-14355470 MS.gene023529:intron 25.0%
!!! ATTGTTTCTTTTTCTCAAGT+TGG + chr4.4:14354629-14354648 MS.gene023529:intron 25.0%
!!! TTTTGCTTCTGATTTGATAT+AGG + chr4.4:14356266-14356285 MS.gene023529:intron 25.0%
!!! TTTTTTTTGAAGAAGCTACT+TGG - chr4.4:14357750-14357769 None:intergenic 25.0%
AAAAAGCAGCATGGTTTAAT+AGG + chr4.4:14357594-14357613 MS.gene023529:intron 30.0%
AAAAATACCAATAGTACCTG+GGG - chr4.4:14354603-14354622 None:intergenic 30.0%
AAGAAGTTCAACATCATCAT+GGG + chr4.4:14354280-14354299 MS.gene023529:CDS 30.0%
AATAGGAACAAACAGGAAAA+TGG + chr4.4:14355172-14355191 MS.gene023529:intron 30.0%
ACAAAGGAGTCTTACATATA+GGG + chr4.4:14357471-14357490 MS.gene023529:intron 30.0%
ACAACAAAAAATTTATGGGG+AGG + chr4.4:14356979-14356998 MS.gene023529:intron 30.0%
ACTTCTGTTATATTGGGATT+GGG + chr4.4:14356554-14356573 MS.gene023529:intron 30.0%
AGAGAATAGACAAACTTACA+AGG - chr4.4:14357198-14357217 None:intergenic 30.0%
ATAATTCTTAAAGGCAAGAC+TGG + chr4.4:14355305-14355324 MS.gene023529:intron 30.0%
ATCCCTTTATGAAAAAGAGA+AGG - chr4.4:14355456-14355475 None:intergenic 30.0%
ATCGAAAAGATAAAATGGAG+AGG - chr4.4:14356719-14356738 None:intergenic 30.0%
ATTGTTTATTGCTTCGAAAG+TGG - chr4.4:14356173-14356192 None:intergenic 30.0%
ATTTAATCTTTATGCTCCGT+CGG + chr4.4:14354710-14354729 MS.gene023529:intron 30.0%
CAAAAATACCAATAGTACCT+GGG - chr4.4:14354604-14354623 None:intergenic 30.0%
CAGTAGGAAATATTATGTCA+AGG - chr4.4:14354563-14354582 None:intergenic 30.0%
GAAGAAAACAAAGAAGGTAA+GGG + chr4.4:14355721-14355740 MS.gene023529:intron 30.0%
GAGAATAGACAAACTTACAA+GGG - chr4.4:14357197-14357216 None:intergenic 30.0%
GCTCAAGTCATAATTCTTAA+AGG + chr4.4:14355296-14355315 MS.gene023529:intron 30.0%
GTCAAGAATGAATGTAATCA+TGG + chr4.4:14355212-14355231 MS.gene023529:intron 30.0%
TAAGCAAAATAGGAACAAAC+AGG + chr4.4:14355165-14355184 MS.gene023529:intron 30.0%
TACAAAGGAGTCTTACATAT+AGG + chr4.4:14357470-14357489 MS.gene023529:intron 30.0%
TCAATATTCCCATACTAACA+CGG - chr4.4:14357101-14357120 None:intergenic 30.0%
TGAAGACTAGAAAGTAGTTT+AGG + chr4.4:14355560-14355579 MS.gene023529:intron 30.0%
TGAATTGATACTTAAGCCAT+AGG + chr4.4:14355038-14355057 MS.gene023529:intron 30.0%
TGACTCACTTCTGTTATATT+GGG + chr4.4:14356548-14356567 MS.gene023529:intron 30.0%
TGCTATTGACAACATAGATA+GGG + chr4.4:14356038-14356057 MS.gene023529:intron 30.0%
TGTTAGTATGGGAATATTGA+AGG + chr4.4:14357101-14357120 MS.gene023529:CDS 30.0%
TTGTTTATTGCTTCGAAAGT+GGG - chr4.4:14356172-14356191 None:intergenic 30.0%
! CATTTTCCAAGAATTATGCT+TGG - chr4.4:14355413-14355432 None:intergenic 30.0%
! TGAAGAATTACATAATGGGA+AGG - chr4.4:14356836-14356855 None:intergenic 30.0%
! TTCAAGATCATGTCATTTGA+AGG + chr4.4:14356314-14356333 MS.gene023529:intron 30.0%
! TTTCTGGAAGAAAACAAAGA+AGG + chr4.4:14355715-14355734 MS.gene023529:intron 30.0%
!! AGGTACTATTGGTATTTTTG+CGG + chr4.4:14354604-14354623 MS.gene023529:intron 30.0%
!! TCTCTTTTTCATAAAGGGAT+TGG + chr4.4:14355456-14355475 MS.gene023529:intron 30.0%
!!! TCTTTGTTTTCTTCCAGAAA+TGG - chr4.4:14355715-14355734 None:intergenic 30.0%
AAAGTGGGATAGTAGATAGA+GGG + chr4.4:14355524-14355543 MS.gene023529:intron 35.0%
AAATATAAGTGAGCAATGCC+AGG - chr4.4:14357824-14357843 None:intergenic 35.0%
AAATGGCTACCTATACCAAA+AGG + chr4.4:14355189-14355208 MS.gene023529:intron 35.0%
AAGTGAGTTTCACTTTCACA+TGG + chr4.4:14355786-14355805 MS.gene023529:intron 35.0%
AATGGCTACCTATACCAAAA+GGG + chr4.4:14355190-14355209 MS.gene023529:intron 35.0%
ACATGCTACAGGAAGTTTAT+AGG - chr4.4:14356883-14356902 None:intergenic 35.0%
ACCAAAAAGCCGAATAAATC+TGG + chr4.4:14355854-14355873 MS.gene023529:intron 35.0%
ACCTTAGTAATTGTTAGTGC+CGG - chr4.4:14357138-14357157 None:intergenic 35.0%
ACTTCTCTGTTTGAAGAGTT+TGG + chr4.4:14356923-14356942 MS.gene023529:intron 35.0%
AGAATGAATGTAATCATGGG+TGG + chr4.4:14355216-14355235 MS.gene023529:intron 35.0%
AGAGCTAGAAATGAGAGTTT+AGG + chr4.4:14356410-14356429 MS.gene023529:intron 35.0%
AGTATGGGAATATTGAAGGA+TGG + chr4.4:14357105-14357124 MS.gene023529:CDS 35.0%
AGTCTTACATATAGGGATGA+AGG + chr4.4:14357478-14357497 MS.gene023529:intron 35.0%
ATAGACAAACTTACAAGGGT+CGG - chr4.4:14357193-14357212 None:intergenic 35.0%
ATGATGATATTGCTGCAGAA+TGG + chr4.4:14357861-14357880 MS.gene023529:CDS 35.0%
CAACATAGATAGGGATAGTA+TGG + chr4.4:14356047-14356066 MS.gene023529:intron 35.0%
CACTTCTGTTATATTGGGAT+TGG + chr4.4:14356553-14356572 MS.gene023529:intron 35.0%
CCTGCTAGTTCAATTTAACA+AGG - chr4.4:14357032-14357051 None:intergenic 35.0%
CCTTGTTAAATTGAACTAGC+AGG + chr4.4:14357029-14357048 MS.gene023529:intron 35.0%
CTATCTATGTTGTCAATAGC+AGG - chr4.4:14356039-14356058 None:intergenic 35.0%
CTGCTATTGACAACATAGAT+AGG + chr4.4:14356037-14356056 MS.gene023529:intron 35.0%
CTGCTGACCAAAAATATTCA+GGG + chr4.4:14355825-14355844 MS.gene023529:intron 35.0%
CTGTTTGAAGAGTTTGGTAT+AGG + chr4.4:14356929-14356948 MS.gene023529:intron 35.0%
CTTCTGTTATATTGGGATTG+GGG + chr4.4:14356555-14356574 MS.gene023529:intron 35.0%
GAAGAAGTTCAACATCATCA+TGG + chr4.4:14354279-14354298 MS.gene023529:CDS 35.0%
GACTAGAAAGTAGTTTAGGA+AGG + chr4.4:14355564-14355583 MS.gene023529:intron 35.0%
GATCTTAGATATAGGGACAA+AGG - chr4.4:14357236-14357255 None:intergenic 35.0%
GCAAAAATACCAATAGTACC+TGG - chr4.4:14354605-14354624 None:intergenic 35.0%
GGAAGAAAACAAAGAAGGTA+AGG + chr4.4:14355720-14355739 MS.gene023529:intron 35.0%
GGCATTGCTCACTTATATTT+GGG + chr4.4:14357824-14357843 MS.gene023529:CDS 35.0%
GTAGGATAGGTAAGCAAAAT+AGG + chr4.4:14355155-14355174 MS.gene023529:intron 35.0%
GTGACTCACTTCTGTTATAT+TGG + chr4.4:14356547-14356566 MS.gene023529:intron 35.0%
TAAAACCTAGTAGCCATTTC+TGG + chr4.4:14355699-14355718 MS.gene023529:intron 35.0%
TAAAGTGGGATAGTAGATAG+AGG + chr4.4:14355523-14355542 MS.gene023529:intron 35.0%
TATAGGGATGAAGGTTTACA+TGG + chr4.4:14357487-14357506 MS.gene023529:intron 35.0%
TGATAGAGATTATCACCCTT+GGG - chr4.4:14354398-14354417 None:intergenic 35.0%
TGGCATTGCTCACTTATATT+TGG + chr4.4:14357823-14357842 MS.gene023529:CDS 35.0%
TTAACGCGAGAACACATTAT+TGG + chr4.4:14354818-14354837 MS.gene023529:intron 35.0%
TTACAGCTGATATGTCACAT+TGG - chr4.4:14355972-14355991 None:intergenic 35.0%
TTATGGTTGAGATGATACCA+GGG + chr4.4:14355603-14355622 MS.gene023529:intron 35.0%
TTCTTGCATTCAGAAGCAAA+AGG - chr4.4:14357530-14357549 None:intergenic 35.0%
TTGATATAGGGAAAGTTCAC+TGG + chr4.4:14356279-14356298 MS.gene023529:intron 35.0%
TTTATGGTTGAGATGATACC+AGG + chr4.4:14355602-14355621 MS.gene023529:intron 35.0%
! AAATATGGAGAGTGTATGCT+AGG + chr4.4:14356471-14356490 MS.gene023529:intron 35.0%
! ACATTCATTCTTGACCCTTT+TGG - chr4.4:14355207-14355226 None:intergenic 35.0%
! ACCAGATTTATTCGGCTTTT+TGG - chr4.4:14355858-14355877 None:intergenic 35.0%
! AGCATACACTCTCCATATTT+TGG - chr4.4:14356471-14356490 None:intergenic 35.0%
! ATTCTTGACCCTTTTGGTAT+AGG - chr4.4:14355201-14355220 None:intergenic 35.0%
! CTTTCTAGTCTTCACAATAG+AGG - chr4.4:14355554-14355573 None:intergenic 35.0%
! GAAATGGCTACTAGGTTTTA+TGG - chr4.4:14355699-14355718 None:intergenic 35.0%
! GCATACACTCTCCATATTTT+GGG - chr4.4:14356470-14356489 None:intergenic 35.0%
! TTTTGCTTACCTATCCTACT+CGG - chr4.4:14355154-14355173 None:intergenic 35.0%
!! ATTGGTGTTGTTAATCCTAG+TGG + chr4.4:14355474-14355493 MS.gene023529:intron 35.0%
!! ATTTAGTTTGGTAAGGCGAT+GGG + chr4.4:14354968-14354987 MS.gene023529:intron 35.0%
!! TTCTCTAGCTTTACTCAATG+TGG - chr4.4:14355018-14355037 None:intergenic 35.0%
!! TTTGGGATGGTTTTACTTGT+GGG + chr4.4:14355274-14355293 MS.gene023529:intron 35.0%
!!! CAACTCATGGTTAGTCTTTT+GGG + chr4.4:14355257-14355276 MS.gene023529:intron 35.0%
!!! TCAACTCATGGTTAGTCTTT+TGG + chr4.4:14355256-14355275 MS.gene023529:intron 35.0%
!!! TTTTGGGATGGTTTTACTTG+TGG + chr4.4:14355273-14355292 MS.gene023529:intron 35.0%
AAATGAGGAACAGAGAACAG+AGG + chr4.4:14355649-14355668 MS.gene023529:intron 40.0%
AAGAATATGCCACCTTGGTA+AGG - chr4.4:14354540-14354559 None:intergenic 40.0%
AATGATGAGCTGGCAGAAAA+GGG + chr4.4:14356515-14356534 MS.gene023529:intron 40.0%
AGGGTGATAATCTCTATCAC+TGG + chr4.4:14354399-14354418 MS.gene023529:CDS 40.0%
AGTTTAGGAAGGCTTCACTT+TGG + chr4.4:14355575-14355594 MS.gene023529:intron 40.0%
ATCCCACTTTAGCAGTTTAG+AGG - chr4.4:14355514-14355533 None:intergenic 40.0%
CAAGATATTTAGTCACTGGG+TGG + chr4.4:14356082-14356101 MS.gene023529:intron 40.0%
CACACCATGTACCCAAAATA+TGG + chr4.4:14356456-14356475 MS.gene023529:intron 40.0%
CATGTCTTGAAAAAGCAGCA+TGG + chr4.4:14357585-14357604 MS.gene023529:intron 40.0%
CCCTGTTCACCAGATTTATT+CGG - chr4.4:14355866-14355885 None:intergenic 40.0%
CCGAATAAATCTGGTGAACA+GGG + chr4.4:14355863-14355882 MS.gene023529:intron 40.0%
CGAATAAATCTGGTGAACAG+GGG + chr4.4:14355864-14355883 MS.gene023529:intron 40.0%
GAAGAAGCTACTTGGAGTAT+CGG - chr4.4:14357742-14357761 None:intergenic 40.0%
GAATAAATCTGGTGAACAGG+GGG + chr4.4:14355865-14355884 MS.gene023529:intron 40.0%
GACCTCTAAACTGCTAAAGT+GGG + chr4.4:14355509-14355528 MS.gene023529:intron 40.0%
GCTGCTGACCAAAAATATTC+AGG + chr4.4:14355824-14355843 MS.gene023529:intron 40.0%
GCTTCTGAATGCAAGAAAAG+AGG + chr4.4:14357533-14357552 MS.gene023529:intron 40.0%
GGGATACCAAGCATAATTCT+TGG + chr4.4:14355404-14355423 MS.gene023529:intron 40.0%
GTCATTTGAAGGAGCTAACT+GGG + chr4.4:14356325-14356344 MS.gene023529:intron 40.0%
GTCTTCGGATCATCACAAAA+CGG + chr4.4:14355753-14355772 MS.gene023529:intron 40.0%
GTGATAGAGATTATCACCCT+TGG - chr4.4:14354399-14354418 None:intergenic 40.0%
GTTTAGGAAGGCTTCACTTT+GGG + chr4.4:14355576-14355595 MS.gene023529:intron 40.0%
TAGACAAACTTACAAGGGTC+GGG - chr4.4:14357192-14357211 None:intergenic 40.0%
TCCGGCACTAACAATTACTA+AGG + chr4.4:14357134-14357153 MS.gene023529:CDS 40.0%
TCTTCGGATCATCACAAAAC+GGG + chr4.4:14355754-14355773 MS.gene023529:intron 40.0%
TGACCTCTAAACTGCTAAAG+TGG + chr4.4:14355508-14355527 MS.gene023529:intron 40.0%
TGGGAATATTGAAGGATGGT+TGG + chr4.4:14357109-14357128 MS.gene023529:CDS 40.0%
TGTTGTTAATCCTAGTGGTG+GGG + chr4.4:14355479-14355498 MS.gene023529:intron 40.0%
TTATATTGGGATTGGGGTAG+TGG + chr4.4:14356561-14356580 MS.gene023529:intron 40.0%
TTCTTCCAGAAATGGCTACT+AGG - chr4.4:14355707-14355726 None:intergenic 40.0%
TTTGTAGGAACACCTTACCA+AGG + chr4.4:14354525-14354544 MS.gene023529:intron 40.0%
! ACCATTCAGCTTAGGTTGTT+TGG + chr4.4:14354460-14354479 MS.gene023529:intron 40.0%
! CCATTCAGCTTAGGTTGTTT+GGG + chr4.4:14354461-14354480 MS.gene023529:intron 40.0%
! GCTTCACTTTGGGAAGTTTA+TGG + chr4.4:14355586-14355605 MS.gene023529:intron 40.0%
! GTGTTGTTAATCCTAGTGGT+GGG + chr4.4:14355478-14355497 MS.gene023529:intron 40.0%
! TGTCATTTGAAGGAGCTAAC+TGG + chr4.4:14356324-14356343 MS.gene023529:intron 40.0%
!! CATATTTTGGGTACATGGTG+TGG - chr4.4:14356458-14356477 None:intergenic 40.0%
!! CATTTAGTTTGGTAAGGCGA+TGG + chr4.4:14354967-14354986 MS.gene023529:intron 40.0%
!! CTCTCCATATTTTGGGTACA+TGG - chr4.4:14356463-14356482 None:intergenic 40.0%
!! GCTACTAGGTTTTATGGTAG+TGG - chr4.4:14355693-14355712 None:intergenic 40.0%
!! GTAACAGTGATTTGCTCAGA+AGG - chr4.4:14356814-14356833 None:intergenic 40.0%
!! TCTCAAGTTGGTGTTTGCTT+TGG + chr4.4:14354641-14354660 MS.gene023529:intron 40.0%
!!! CATGCTGCTTTTTCAAGACA+TGG - chr4.4:14357587-14357606 None:intergenic 40.0%
!!! TCATGGTTAGTCTTTTGGGA+TGG + chr4.4:14355261-14355280 MS.gene023529:intron 40.0%
!!! TTTTTCAAGACATGGAGGAC+TGG - chr4.4:14357579-14357598 None:intergenic 40.0%
AAAGGACAAGCCTATTGGGT+GGG - chr4.4:14355069-14355088 None:intergenic 45.0%
AAGGAGCTAACTGGGTCAAT+GGG + chr4.4:14356333-14356352 MS.gene023529:intron 45.0%
AATACCAATAGTACCTGGGG+AGG - chr4.4:14354600-14354619 None:intergenic 45.0%
AATGGTGAAGATGGTGAACC+TGG - chr4.4:14354446-14354465 None:intergenic 45.0%
ACCCAATAGGCTTGTCCTTT+GGG + chr4.4:14355069-14355088 MS.gene023529:intron 45.0%
ACTGGAGTAACATCCTCCTA+GGG + chr4.4:14355323-14355342 MS.gene023529:intron 45.0%
ATAGGATTCTCCCACCCAAT+AGG + chr4.4:14355056-14355075 MS.gene023529:intron 45.0%
ATCCCAAAGGACAAGCCTAT+TGG - chr4.4:14355074-14355093 None:intergenic 45.0%
ATGATGAGCTGGCAGAAAAG+GGG + chr4.4:14356516-14356535 MS.gene023529:intron 45.0%
ATGGTGAAGATGGTGAACCT+GGG - chr4.4:14354445-14354464 None:intergenic 45.0%
ATTGAAGGATGGTTGGAGTC+CGG + chr4.4:14357116-14357135 MS.gene023529:CDS 45.0%
CAAGGAAGAATATGCCACCT+TGG - chr4.4:14354545-14354564 None:intergenic 45.0%
CACTTTCACATGGTGCAGAA+CGG + chr4.4:14355796-14355815 MS.gene023529:intron 45.0%
CAGAATGCTCTCTCAACTCA+TGG + chr4.4:14355244-14355263 MS.gene023529:intron 45.0%
CAGGTGATCACACGTGATAA+TGG - chr4.4:14356020-14356039 None:intergenic 45.0%
CCATCTTCACCATTCAGCTT+AGG + chr4.4:14354452-14354471 MS.gene023529:intron 45.0%
CCCAAACAACCTAAGCTGAA+TGG - chr4.4:14354464-14354483 None:intergenic 45.0%
CCTAAGCTGAATGGTGAAGA+TGG - chr4.4:14354455-14354474 None:intergenic 45.0%
CTTCGGATCATCACAAAACG+GGG + chr4.4:14355755-14355774 MS.gene023529:intron 45.0%
GAATGATGAGCTGGCAGAAA+AGG + chr4.4:14356514-14356533 MS.gene023529:intron 45.0%
GCAAGAAGAGAATGATGAGC+TGG + chr4.4:14356505-14356524 MS.gene023529:intron 45.0%
GCCGAATAAATCTGGTGAAC+AGG + chr4.4:14355862-14355881 MS.gene023529:intron 45.0%
GGCTTGAAAGGATAGTCAGT+AGG - chr4.4:14354579-14354598 None:intergenic 45.0%
GTTATGCTTCACCCCTTCTA+TGG + chr4.4:14355378-14355397 MS.gene023529:intron 45.0%
GTTGAGAGAAGACATGCTAC+AGG - chr4.4:14356894-14356913 None:intergenic 45.0%
TAAGGGAGCAAGTGAGTCTT+CGG + chr4.4:14355738-14355757 MS.gene023529:intron 45.0%
TAGAGAAGAGTCCATCCCAA+AGG - chr4.4:14355087-14355106 None:intergenic 45.0%
TATTGGGTGGGAGAATCCTA+TGG - chr4.4:14355057-14355076 None:intergenic 45.0%
TCCCAAAGGACAAGCCTATT+GGG - chr4.4:14355073-14355092 None:intergenic 45.0%
TGGTATCCCCATCCATAGAA+GGG - chr4.4:14355393-14355412 None:intergenic 45.0%
TTATTGAGAGCTTGCCGAGT+AGG + chr4.4:14355137-14355156 MS.gene023529:intron 45.0%
TTGGTATCCCCATCCATAGA+AGG - chr4.4:14355394-14355413 None:intergenic 45.0%
! AATAGGCTTGTCCTTTGGGA+TGG + chr4.4:14355073-14355092 MS.gene023529:intron 45.0%
! ACTGTGTTTCTACTCAACCC+TGG - chr4.4:14355623-14355642 None:intergenic 45.0%
! GGAGAGTGGACTCAAATAAG+AGG - chr4.4:14356151-14356170 None:intergenic 45.0%
! TTATCAATCTGGCTTCCCCT+AGG - chr4.4:14355342-14355361 None:intergenic 45.0%
! TTGGTGTTTGCTTTGGCATG+TGG + chr4.4:14354648-14354667 MS.gene023529:intron 45.0%
!! AAAGGGGCATTTGGCATCAA+AGG + chr4.4:14355890-14355909 MS.gene023529:intron 45.0%
!! CATGAGTTGAGAGAGCATTC+TGG - chr4.4:14355246-14355265 None:intergenic 45.0%
!! GGTGTTGTTAATCCTAGTGG+TGG + chr4.4:14355477-14355496 MS.gene023529:intron 45.0%
!!! GCTGCTTTTTCAAGACATGG+AGG - chr4.4:14357584-14357603 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTGT+AGG + chr4.4:14354510-14354529 MS.gene023529:intron 5.0%
ACAACCTCAGTGTCTGCTTC+TGG + chr4.4:14354308-14354327 MS.gene023529:CDS 50.0%
ACAGAGAACAGAGGAGAACC+CGG + chr4.4:14355658-14355677 MS.gene023529:intron 50.0%
ACCTGATGGCCGTGTTAGTA+TGG + chr4.4:14357089-14357108 MS.gene023529:CDS 50.0%
CAAAGGACAAGCCTATTGGG+TGG - chr4.4:14355070-14355089 None:intergenic 50.0%
CACCCAATAGGCTTGTCCTT+TGG + chr4.4:14355068-14355087 MS.gene023529:intron 50.0%
CACTGCAACGTAGAACCTGA+TGG + chr4.4:14357075-14357094 MS.gene023529:CDS 50.0%
CACTGGATCGCCACCATTAT+TGG + chr4.4:14354416-14354435 MS.gene023529:CDS 50.0%
CAGCAGAACAATGAGGAGGA+GGG - chr4.4:14354373-14354392 None:intergenic 50.0%
CATCAGGTTCTACGTTGCAG+TGG - chr4.4:14357077-14357096 None:intergenic 50.0%
CATTGTTCTGCTGGTCCCAA+GGG + chr4.4:14354380-14354399 MS.gene023529:CDS 50.0%
CCTGATGGCCGTGTTAGTAT+GGG + chr4.4:14357090-14357109 MS.gene023529:CDS 50.0%
CTGGAGTAACATCCTCCTAG+GGG + chr4.4:14355324-14355343 MS.gene023529:intron 50.0%
CTTCACCCCTTCTATGGATG+GGG + chr4.4:14355384-14355403 MS.gene023529:intron 50.0%
CTTTCCAGAAGCAGACACTG+AGG - chr4.4:14354315-14354334 None:intergenic 50.0%
GAAGCAGACACTGAGGTTGT+CGG - chr4.4:14354308-14354327 None:intergenic 50.0%
GAAGGAGCTAACTGGGTCAA+TGG + chr4.4:14356332-14356351 MS.gene023529:intron 50.0%
GACTGGAGTAACATCCTCCT+AGG + chr4.4:14355322-14355341 MS.gene023529:intron 50.0%
GATCATCACAAAACGGGGTC+AGG + chr4.4:14355760-14355779 MS.gene023529:intron 50.0%
GCAGACAATGCTGTTGTTCC+TGG + chr4.4:14357803-14357822 MS.gene023529:intron 50.0%
GCATAGCTCTCAGCTGTATC+AGG + chr4.4:14356648-14356667 MS.gene023529:intron 50.0%
GCTTCACCCCTTCTATGGAT+GGG + chr4.4:14355383-14355402 MS.gene023529:intron 50.0%
GGTATCCCCATCCATAGAAG+GGG - chr4.4:14355392-14355411 None:intergenic 50.0%
GTAGGAACACCTTACCAAGG+TGG + chr4.4:14354528-14354547 MS.gene023529:intron 50.0%
TCATTGTTCTGCTGGTCCCA+AGG + chr4.4:14354379-14354398 MS.gene023529:CDS 50.0%
TGCTTCACCCCTTCTATGGA+TGG + chr4.4:14355382-14355401 MS.gene023529:intron 50.0%
TGGTGAAGATGGTGAACCTG+GGG - chr4.4:14354444-14354463 None:intergenic 50.0%
TTCAAGACATGGAGGACTGG+AGG - chr4.4:14357576-14357595 None:intergenic 50.0%
TTGCTTCGAAAGTGGGAGAG+TGG - chr4.4:14356165-14356184 None:intergenic 50.0%
TTGGGACCAGCAGAACAATG+AGG - chr4.4:14354380-14354399 None:intergenic 50.0%
! TATTGGGATTGGGGTAGTGG+AGG + chr4.4:14356564-14356583 MS.gene023529:intron 50.0%
! TGAACCTGGGGTGCCAATAA+TGG - chr4.4:14354432-14354451 None:intergenic 50.0%
!! ATGGTAGTGGTGACGACTTC+CGG - chr4.4:14355680-14355699 None:intergenic 50.0%
AGTACCTGGGGAGGCTTGAA+AGG - chr4.4:14354591-14354610 None:intergenic 55.0%
CAAGCCTCCCCAGGTACTAT+TGG + chr4.4:14354593-14354612 MS.gene023529:intron 55.0%
CATCACAAAACGGGGTCAGG+AGG + chr4.4:14355763-14355782 MS.gene023529:intron 55.0%
CCAGCAGAACAATGAGGAGG+AGG - chr4.4:14354374-14354393 None:intergenic 55.0%
CCCATACTAACACGGCCATC+AGG - chr4.4:14357093-14357112 None:intergenic 55.0%
CCTCCTCCTCATTGTTCTGC+TGG + chr4.4:14354371-14354390 MS.gene023529:CDS 55.0%
CTATCCTTTCAAGCCTCCCC+AGG + chr4.4:14354584-14354603 MS.gene023529:CDS 55.0%
CTGGTGAACAGGGGGTGAAA+GGG + chr4.4:14355873-14355892 MS.gene023529:intron 55.0%
GAACTTCTTCCTCCTCCACC+TGG - chr4.4:14354269-14354288 None:intergenic 55.0%
GAGAGCTTGCCGAGTAGGAT+AGG + chr4.4:14355142-14355161 MS.gene023529:intron 55.0%
GGACCAGCAGAACAATGAGG+AGG - chr4.4:14354377-14354396 None:intergenic 55.0%
GGCATCAAAGGTGGCTGTTG+TGG + chr4.4:14355902-14355921 MS.gene023529:intron 55.0%
TCTGGTGAACAGGGGGTGAA+AGG + chr4.4:14355872-14355891 MS.gene023529:intron 55.0%
TGGTGAACAGGGGGTGAAAG+GGG + chr4.4:14355874-14355893 MS.gene023529:intron 55.0%
! ACCTGGGGTGCCAATAATGG+TGG - chr4.4:14354429-14354448 None:intergenic 55.0%
! GGGGCATTTGGCATCAAAGG+TGG + chr4.4:14355893-14355912 MS.gene023529:intron 55.0%
! GTTTGGTAAGGCGATGGGCT+TGG + chr4.4:14354973-14354992 MS.gene023529:intron 55.0%
! TAAGGCGATGGGCTTGGCTT+AGG + chr4.4:14354979-14354998 MS.gene023529:intron 55.0%
! TCAATCTGGCTTCCCCTAGG+AGG - chr4.4:14355339-14355358 None:intergenic 55.0%
!! GATTGGGGTAGTGGAGGAAG+GGG + chr4.4:14356570-14356589 MS.gene023529:intron 55.0%
!! GGATTGGGGTAGTGGAGGAA+GGG + chr4.4:14356569-14356588 MS.gene023529:intron 55.0%
!! TGGTAGTGGTGACGACTTCC+GGG - chr4.4:14355679-14355698 None:intergenic 55.0%
GCCACCATTATTGGCACCCC+AGG + chr4.4:14354425-14354444 MS.gene023529:CDS 60.0%
GTCAACTGCTCCCCACCACT+AGG - chr4.4:14355492-14355511 None:intergenic 60.0%
!! CAGGGGGTGAAAGGGGCATT+TGG + chr4.4:14355881-14355900 MS.gene023529:intron 60.0%
!! GGGATTGGGGTAGTGGAGGA+AGG + chr4.4:14356568-14356587 MS.gene023529:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 14354260 14357904 14354260 ID=MS.gene023529
chr4.4 mRNA 14354260 14357904 14354260 ID=MS.gene023529.t1;Parent=MS.gene023529
chr4.4 exon 14354260 14354446 14354260 ID=MS.gene023529.t1.exon1;Parent=MS.gene023529.t1
chr4.4 CDS 14354260 14354446 14354260 ID=cds.MS.gene023529.t1;Parent=MS.gene023529.t1
chr4.4 exon 14354532 14354605 14354532 ID=MS.gene023529.t1.exon2;Parent=MS.gene023529.t1
chr4.4 CDS 14354532 14354605 14354532 ID=cds.MS.gene023529.t1;Parent=MS.gene023529.t1
chr4.4 exon 14357051 14357198 14357051 ID=MS.gene023529.t1.exon3;Parent=MS.gene023529.t1
chr4.4 CDS 14357051 14357198 14357051 ID=cds.MS.gene023529.t1;Parent=MS.gene023529.t1
chr4.4 exon 14357807 14357904 14357807 ID=MS.gene023529.t1.exon4;Parent=MS.gene023529.t1
chr4.4 CDS 14357807 14357904 14357807 ID=cds.MS.gene023529.t1;Parent=MS.gene023529.t1
Gene Sequence

>MS.gene023529

ATGATACCAGGTGGAGGAGGAAGAAGTTCAACATCATCATGGGCACCGACAACCTCAGTGTCTGCTTCTGGAAAGAGAATTCAAAGAGAAATGGTTGAACTCAACAACGACCCTCCTCCTCATTGTTCTGCTGGTCCCAAGGGTGATAATCTCTATCACTGGATCGCCACCATTATTGGCACCCCAGGTTCACCATCTTCACCATTCAGCTTAGGTTGTTTGGGTTCAGATTGAATTTATCATAAAGTTGTTTTTTTTTTTTTTTTTTGTAGGAACACCTTACCAAGGTGGCATATTCTTCCTTGACATAATATTTCCTACTGACTATCCTTTCAAGCCTCCCCAGGTACTATTGGTATTTTTGCGGCTATTGTTTCTTTTTCTCAAGTTGGTGTTTGCTTTGGCATGTGGAAGAATGTTAGCATGAAATGAAACTGTATTTTTATATAGATTTAATCTTTATGCTCCGTCGGTATAAAATTATTTTACATGTGCATCTAATAATGTGTTGTTACTTCATTTAATGTGATTGAAAACATGAATTGTCATAATTATTAATTAACGCGAGAACACATTATTGGATGCATGTGTAAAATAACTTTACACTGTCAGTGTATAGAAATTAAAATCTTTTTATATAATGAATGCGTTAAGTTCCTTGAAGTTAATGCTTATTACTAATTGACATAAAGTTGTAATTCTATATACATTTAGTTTGGTAAGGCGATGGGCTTGGCTTAGGCTTATATTGTGCACCACATTGAGTAAAGCTAGAGAATGAATTGATACTTAAGCCATAGGATTCTCCCACCCAATAGGCTTGTCCTTTGGGATGGACTCTTCTCTAGAGCTCAAGTCATACCAACACTTGATAGTTTTATTGAGAGCTTGCCGAGTAGGATAGGTAAGCAAAATAGGAACAAACAGGAAAATGGCTACCTATACCAAAAGGGTCAAGAATGAATGTAATCATGGGTGGTTAGCCAGAATGCTCTCTCAACTCATGGTTAGTCTTTTGGGATGGTTTTACTTGTGGGCTCAAGTCATAATTCTTAAAGGCAAGACTGGAGTAACATCCTCCTAGGGGAAGCCAGATTGATAAAGTGAACTATTCTACAGTTATGCTTCACCCCTTCTATGGATGGGGATACCAAGCATAATTCTTGGAAAATGCATAAAATTGTTTTTGTAATCCTTCTCTTTTTCATAAAGGGATTGGTGTTGTTAATCCTAGTGGTGGGGAGCAGTTGACCTCTAAACTGCTAAAGTGGGATAGTAGATAGAGGGAAAGCCTCTATTGTGAAGACTAGAAAGTAGTTTAGGAAGGCTTCACTTTGGGAAGTTTATGGTTGAGATGATACCAGGGTTGAGTAGAAACACAGTAGAATTAAATGAGGAACAGAGAACAGAGGAGAACCCGGAAGTCGTCACCACTACCATAAAACCTAGTAGCCATTTCTGGAAGAAAACAAAGAAGGTAAGGGAGCAAGTGAGTCTTCGGATCATCACAAAACGGGGTCAGGAGGAAGTGAGTTTCACTTTCACATGGTGCAGAACGGCTGAAGCTGCTGACCAAAAATATTCAGGGAAAATGACCAAAAAGCCGAATAAATCTGGTGAACAGGGGGTGAAAGGGGCATTTGGCATCAAAGGTGGCTGTTGTGGCAGTCAACACAGTTTTCAGTCGAAATAGCTACTCTTGTATAATGCCAATGTGACATATCAGCTGTAAGTGTCGCAGCTGCGCTGCTGCAATTCCATTATCACGTGTGATCACCTGCTATTGACAACATAGATAGGGATAGTATGGTAGCTGATATTACAAGATATTTAGTCACTGGGTGGTCTGTTATTGTGTTTAACAATTTTGAACTATTGAATCTTACATCCTCTTATTTGAGTCCACTCTCCCACTTTCGAAGCAATAAACAATATATCATTTTGTATGCATTCAACTAATATTGACTGAAAAAAAAGGTTATTCACTGGCTTGAATGAACATATTTTTTTGCTTCTGATTTGATATAGGGAAAGTTCACTGGCTAACTGTTTTGTTCAAGATCATGTCATTTGAAGGAGCTAACTGGGTCAATGGGAACTTTCAGTTGTTTTTCAAGTAGACTTTAATAAATTGGTTACTTGTATTTGATAGAGCTAGAAATGAGAGTTTAGGTGTTGATGACGTGTCTAGTCATCCACACCATGTACCCAAAATATGGAGAGTGTATGCTAGGAAAAATAGAAAGCAAGAAGAGAATGATGAGCTGGCAGAAAAGGGGTGTGATGCGTGACTCACTTCTGTTATATTGGGATTGGGGTAGTGGAGGAAGGGGTCAGAAAAAGAATTCTTTTAGGAGCAGAGATTTGTGATATTCTTTGAGTCAGTGAGCATAGCTCTCAGCTGTATCAGGAAGTTTGCTTCCTTTGCTATTTTTCCTTTCTATCATTAATGAAATCCTCTCCATTTTATCTTTTCGATACTATTTGATGCTGTTACTGTGATTGAGTTTTAGTACCTATCAGTATTTGTATAAAATGCTTGTTTTTTTCTCCTTCTGAGCAAATCACTGTTACCTTCCCATTATGTAATTCTTCAAGTACAGTCCCTTTATTTTCAAAGCCTATAAACTTCCTGTAGCATGTCTTCTCTCAACTTTTCATAAACTTCTCTGTTTGAAGAGTTTGGTATAGGTTTAAAAAATAAAAAGGCAATATGCAGACAACAAAAAATTTATGGGGAGGTAAAAGTAATTTAATTGTTGTGTATTGCCTTGTTAAATTGAACTAGCAGGTAGTCTTCAGAACTCGCATTTACCACTGCAACGTAGAACCTGATGGCCGTGTTAGTATGGGAATATTGAAGGATGGTTGGAGTCCGGCACTAACAATTACTAAGGTGCTACTTGCTGTTAGATTACTTTTGACAAATCCCGACCCTTGTAAGTTTGTCTATTCTCTTCTTGAATGCTACTACCTTTGTCCCTATATCTAAGATCTCTTTAGTTAATGCACGAGAATTAAGAAAAATATTTCTATATTAAATTTGTCAACAATGTACAATCTCTTTTCAGAATTATCCATCAATTATTAAGAGAGATAAATGATTAGTCTTTTAATTTCCCCATTTAATTTAGGGTATGTATTTTTGTGAAAGATCACTAATGTATCTTGTAATTTGAAAATAATCTTACAAAAGGGAAAAGAAAAATTTACAAAGGAGTCTTACATATAGGGATGAAGGTTTACATGGTACTTGTATACTTAGAGCCTTTTGCTTCTGAATGCAAGAAAAGAGGAAATTATTGTATTATTACCTCCAGTCCTCCATGTCTTGAAAAAGCAGCATGGTTTAATAGGACACTCCGCTAATGATTATGTCTTTTAACACTGGATTCAATTAATTTTCAAACATGCAGTATTAGTAATACCAATATTTACATTTTGTTTGTATAGAAAGTAATAACTACACTTAAAATCAGCCGATACTCCAAGTAGCTTCTTCAAAAAAAAATGATCTTAGAATGTAAAGTTGTTTTCGTTGTTGCAGACAATGCTGTTGTTCCTGGCATTGCTCACTTATATTTGGGAGACAGAGCAAAACATGATGATATTGCTGCAGAATGGACTATCCGATTCGCCAAGTGA
Protein sequence

>MS.gene023529.t1

MIPGGGGRSSTSSWAPTTSVSASGKRIQREMVELNNDPPPHCSAGPKGDNLYHWIATIIGTPGTPYQGGIFFLDIIFPTDYPFKPPQVVFRTRIYHCNVEPDGRVSMGILKDGWSPALTITKVLLAVRLLLTNPDPYNAVVPGIAHLYLGDRAKHDDIAAEWTIRFAK