AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08774

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08774.t1 MTR_8g085690 99.405 168 1 0 1 168 1 168 2.79e-123 344
MS.gene08774.t1 MTR_7g116940 51.724 145 70 0 23 167 2 146 1.68e-56 174
MS.gene08774.t1 MTR_1g021150 51.724 145 70 0 23 167 2 146 6.04e-56 173
MS.gene08774.t1 MTR_5g075580 51.724 145 70 0 23 167 2 146 8.03e-56 172
MS.gene08774.t1 MTR_3g062450 51.034 145 71 0 23 167 2 146 3.51e-55 171
MS.gene08774.t1 MTR_4g073240 51.724 145 70 0 23 167 2 146 4.82e-55 171
MS.gene08774.t1 MTR_8g071040 50.345 145 72 0 23 167 2 146 7.38e-55 170
MS.gene08774.t1 MTR_7g116940 49.342 152 70 1 23 167 2 153 1.70e-53 167
MS.gene08774.t1 MTR_1g021150 52.419 124 59 0 44 167 31 154 3.59e-46 148
MS.gene08774.t1 MTR_5g075580 52.991 117 55 0 51 167 1 117 4.09e-44 142
MS.gene08774.t1 MTR_4g073240 52.137 117 56 0 51 167 1 117 6.00e-43 139
MS.gene08774.t1 MTR_7g116940 52.778 108 51 0 23 130 2 109 1.50e-40 133
MS.gene08774.t1 MTR_2g078010 39.161 143 87 0 25 167 8 150 5.07e-35 120
MS.gene08774.t1 MTR_3g098780 42.568 148 77 4 26 168 6 150 1.27e-31 112
MS.gene08774.t1 MTR_2g078010 39.231 130 79 0 25 154 8 137 1.91e-31 110
MS.gene08774.t1 MTR_3g098780 42.568 148 77 4 26 168 30 174 2.64e-31 112
MS.gene08774.t1 MTR_2g078010 35.669 157 87 1 25 167 8 164 5.68e-31 110
MS.gene08774.t1 MTR_4g108080 34.848 132 86 0 25 156 7 138 2.71e-28 102
MS.gene08774.t1 MTR_8g468530 34.848 132 86 0 25 156 23 154 8.55e-28 102
MS.gene08774.t1 MTR_1g095510 44.262 122 64 2 15 135 37 155 7.16e-27 100
MS.gene08774.t1 MTR_2g078010 43.564 101 57 0 25 125 8 108 2.85e-26 96.7
MS.gene08774.t1 MTR_1g095510 44.167 120 63 2 15 133 37 153 3.21e-26 98.2
MS.gene08774.t1 MTR_4g076200 37.903 124 77 0 25 148 35 158 8.66e-26 97.4
MS.gene08774.t1 MTR_4g073240 49.383 81 41 0 87 167 4 84 3.22e-25 93.2
MS.gene08774.t1 MTR_1g095510 47.312 93 49 0 43 135 9 101 3.49e-25 94.7
MS.gene08774.t1 MTR_5g009020 35.606 132 85 0 17 148 27 158 3.84e-24 93.2
MS.gene08774.t1 MTR_4g076200 39.623 106 64 0 43 148 12 117 1.10e-23 90.9
MS.gene08774.t1 MTR_4g108080 38.462 104 64 0 25 128 7 110 1.29e-23 90.1
MS.gene08774.t1 MTR_3g110110 36.667 120 73 2 20 136 1 120 2.58e-20 82.4
MS.gene08774.t1 MTR_5g016630 36.111 108 67 1 50 155 37 144 5.84e-20 81.6
MS.gene08774.t1 MTR_4g094872 37.963 108 65 1 50 155 37 144 8.49e-20 81.3
MS.gene08774.t1 MTR_2g096690 38.384 99 48 1 50 135 33 131 1.54e-18 78.2
MS.gene08774.t1 MTR_2g096690 38.384 99 48 1 50 135 33 131 1.75e-18 78.2
MS.gene08774.t1 MTR_8g076490 36.207 116 70 3 9 123 4 116 4.63e-18 77.0
MS.gene08774.t1 MTR_4g063490 32.479 117 66 1 49 152 32 148 1.05e-17 75.9
MS.gene08774.t1 MTR_7g087590 31.034 116 80 0 25 140 13 128 1.07e-17 78.2
MS.gene08774.t1 MTR_4g108080 30.702 114 71 1 51 156 25 138 1.30e-17 75.5
MS.gene08774.t1 MTR_5g021260 33.613 119 71 3 9 123 2 116 1.84e-16 72.8
MS.gene08774.t1 MTR_2g096690 50.820 61 30 0 50 110 33 93 1.15e-14 67.0
MS.gene08774.t1 MTR_5g019480 29.851 134 88 3 9 138 19 150 5.23e-14 66.6
MS.gene08774.t1 MTR_7g451800 33.846 130 75 4 21 139 34 163 5.74e-14 68.6
MS.gene08774.t1 MTR_7g047620 33.846 130 75 4 21 139 34 163 5.74e-14 68.6
MS.gene08774.t1 MTR_5g019480 29.851 134 88 3 9 138 16 147 5.75e-14 66.6
MS.gene08774.t1 MTR_8g028920 29.268 123 85 2 48 168 26 148 9.92e-14 65.9
MS.gene08774.t1 MTR_4g086440 32.540 126 75 3 21 136 33 158 1.76e-13 67.0
MS.gene08774.t1 MTR_8g098595 28.455 123 86 2 48 168 11 133 2.53e-13 64.7
MS.gene08774.t1 MTR_7g047570 32.090 134 80 4 17 139 30 163 2.59e-13 66.6
MS.gene08774.t1 MTR_7g451770 32.090 134 80 4 17 139 30 163 2.59e-13 66.6
MS.gene08774.t1 MTR_2g013650 33.600 125 71 4 24 137 681 804 3.63e-13 66.6
MS.gene08774.t1 MTR_8g028920 32.075 106 70 2 65 168 4 109 4.35e-13 63.5
MS.gene08774.t1 MTR_4g020620 32.800 125 72 4 24 137 628 751 8.89e-13 65.5
MS.gene08774.t1 MTR_8g023380 28.682 129 75 3 22 141 5 125 1.25e-12 63.9
MS.gene08774.t1 MTR_4g088835 36.559 93 47 4 56 137 703 794 1.60e-12 64.7
MS.gene08774.t1 MTR_4g020620 32.800 125 72 4 24 137 570 693 2.33e-12 64.3
MS.gene08774.t1 MTR_1g112730 30.345 145 80 5 4 137 844 978 3.03e-12 63.9
MS.gene08774.t1 MTR_0274s0030 32.258 124 74 3 24 137 113 236 3.97e-12 63.5
MS.gene08774.t1 MTR_0332s0040 34.234 111 60 5 55 154 187 295 5.25e-12 63.2
MS.gene08774.t1 MTR_4g106690 28.455 123 86 2 48 168 26 148 5.60e-12 61.2
MS.gene08774.t1 MTR_1g092465 36.082 97 42 4 56 137 267 358 1.94e-11 61.6
MS.gene08774.t1 MTR_1g092440 34.783 92 50 3 56 137 412 503 2.34e-11 61.6
MS.gene08774.t1 MTR_4g007210 40.000 90 43 4 56 134 112 201 2.51e-11 61.2
MS.gene08774.t1 MTR_1g092460 35.052 97 43 4 56 137 208 299 2.64e-11 61.2
MS.gene08774.t1 MTR_2g018540 30.370 135 82 4 24 146 107 241 4.34e-11 60.5
MS.gene08774.t1 MTR_7g023760 34.783 92 50 3 56 137 122 213 5.27e-11 60.1
MS.gene08774.t1 MTR_2g079270 33.333 114 55 5 56 154 338 445 9.99e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08774.t1 AT3G13550 67.403 181 46 1 1 168 2 182 7.60e-88 255
MS.gene08774.t1 AT3G13550 68.456 149 34 1 1 136 2 150 1.59e-70 211
MS.gene08774.t1 AT3G08690 51.724 145 70 0 23 167 2 146 5.53e-57 176
MS.gene08774.t1 AT3G08690 51.724 145 70 0 23 167 2 146 5.53e-57 176
MS.gene08774.t1 AT2G16740 52.414 145 69 0 23 167 2 146 1.01e-56 175
MS.gene08774.t1 AT1G64230 52.414 145 69 0 23 167 2 146 2.55e-56 174
MS.gene08774.t1 AT1G64230 52.414 145 69 0 23 167 2 146 2.55e-56 174
MS.gene08774.t1 AT5G41700 51.724 145 70 0 23 167 2 146 1.09e-55 172
MS.gene08774.t1 AT5G41700 51.724 145 70 0 23 167 2 146 1.09e-55 172
MS.gene08774.t1 AT5G41700 51.724 145 70 0 23 167 2 146 1.09e-55 172
MS.gene08774.t1 AT5G56150 51.034 145 71 0 23 167 2 146 1.59e-55 172
MS.gene08774.t1 AT5G53300 50.345 145 72 0 23 167 2 146 1.12e-54 170
MS.gene08774.t1 AT5G53300 50.345 145 72 0 23 167 2 146 1.12e-54 170
MS.gene08774.t1 AT5G53300 50.345 145 72 0 23 167 2 146 1.12e-54 170
MS.gene08774.t1 AT4G27960 50.345 145 72 0 23 167 2 146 1.40e-54 169
MS.gene08774.t1 AT4G27960 49.324 148 75 0 20 167 29 176 8.57e-54 169
MS.gene08774.t1 AT5G41700 50.685 146 71 1 23 167 2 147 8.39e-53 165
MS.gene08774.t1 AT1G64230 48.701 154 70 1 23 167 2 155 4.13e-52 164
MS.gene08774.t1 AT3G08700 47.945 146 75 1 23 167 2 147 3.98e-50 158
MS.gene08774.t1 AT3G08700 47.945 146 75 1 23 167 2 147 3.98e-50 158
MS.gene08774.t1 AT1G64230 40.107 187 70 1 23 167 2 188 4.12e-47 152
MS.gene08774.t1 AT1G64230 40.107 187 70 1 23 167 2 188 4.12e-47 152
MS.gene08774.t1 AT5G41700 52.427 103 49 0 23 125 2 104 8.63e-39 129
MS.gene08774.t1 AT5G56150 51.961 102 49 0 23 124 2 103 2.76e-38 127
MS.gene08774.t1 AT5G53300 52.475 101 48 0 23 123 2 102 6.71e-38 126
MS.gene08774.t1 AT1G36340 49.600 125 63 0 43 167 28 152 1.55e-36 124
MS.gene08774.t1 AT1G36340 49.600 125 63 0 43 167 28 152 1.55e-36 124
MS.gene08774.t1 AT1G78870 40.559 143 85 0 25 167 8 150 4.18e-36 123
MS.gene08774.t1 AT1G16890 39.161 143 87 0 25 167 8 150 4.37e-35 120
MS.gene08774.t1 AT1G16890 39.189 148 85 1 25 167 12 159 1.12e-33 117
MS.gene08774.t1 AT5G50870 38.621 145 87 2 26 168 6 150 1.52e-29 107
MS.gene08774.t1 AT1G14400 34.722 144 89 1 25 163 7 150 8.91e-29 104
MS.gene08774.t1 AT1G14400 34.722 144 89 1 25 163 7 150 8.91e-29 104
MS.gene08774.t1 AT1G78870 42.727 110 63 0 58 167 8 117 1.84e-28 102
MS.gene08774.t1 AT2G02760 34.848 132 86 0 25 156 7 138 4.37e-28 102
MS.gene08774.t1 AT2G02760 34.848 132 86 0 25 156 7 138 4.37e-28 102
MS.gene08774.t1 AT2G02760 34.848 132 86 0 25 156 7 138 4.37e-28 102
MS.gene08774.t1 AT2G02760 34.848 132 86 0 25 156 7 138 4.37e-28 102
MS.gene08774.t1 AT1G16890 41.818 110 64 0 58 167 8 117 6.25e-28 101
MS.gene08774.t1 AT5G62540 35.252 139 90 0 23 161 5 143 1.37e-27 101
MS.gene08774.t1 AT1G78870 43.810 105 59 0 25 129 8 112 5.54e-27 98.6
MS.gene08774.t1 AT5G50870 37.821 156 84 4 26 168 6 161 1.11e-26 100
MS.gene08774.t1 AT1G78870 42.342 111 63 1 58 167 8 118 1.25e-26 97.8
MS.gene08774.t1 AT3G20060 38.281 128 77 1 10 135 22 149 9.78e-25 94.7
MS.gene08774.t1 AT2G32790 36.129 155 98 1 15 168 22 176 1.45e-24 94.4
MS.gene08774.t1 AT3G24515 37.179 156 85 3 26 168 10 165 2.21e-24 98.2
MS.gene08774.t1 AT1G50490 37.500 136 83 1 15 148 26 161 4.57e-24 92.8
MS.gene08774.t1 AT3G20060 40.625 96 57 0 40 135 9 104 1.32e-21 85.5
MS.gene08774.t1 AT5G25760 37.500 120 72 2 20 136 1 120 4.99e-21 84.3
MS.gene08774.t1 AT5G25760 37.500 120 72 2 20 136 1 120 4.99e-21 84.3
MS.gene08774.t1 AT3G24515 31.492 181 86 3 26 168 10 190 7.98e-21 88.2
MS.gene08774.t1 AT3G57870 39.423 104 61 1 50 151 38 141 2.07e-19 80.5
MS.gene08774.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.31e-19 81.3
MS.gene08774.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.31e-19 81.3
MS.gene08774.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.31e-19 81.3
MS.gene08774.t1 AT5G05080 31.496 127 87 0 25 151 13 139 5.31e-19 81.3
MS.gene08774.t1 AT3G46460 38.384 99 48 1 50 135 33 131 9.49e-19 79.0
MS.gene08774.t1 AT1G75440 36.975 119 65 4 11 123 2 116 3.97e-17 74.3
MS.gene08774.t1 AT5G59300 36.364 99 50 1 50 135 33 131 9.10e-17 73.6
MS.gene08774.t1 AT3G55380 30.508 118 69 1 50 154 34 151 2.91e-16 72.4
MS.gene08774.t1 AT4G36410 32.773 119 70 4 9 123 4 116 2.60e-15 69.7
MS.gene08774.t1 AT5G42990 34.167 120 69 4 11 124 2 117 5.32e-15 68.9
MS.gene08774.t1 AT1G45050 35.043 117 72 3 11 124 2 117 5.85e-15 68.9
MS.gene08774.t1 AT2G46030 31.707 123 82 2 48 168 26 148 3.15e-14 67.4
MS.gene08774.t1 AT2G46030 31.707 123 82 2 48 168 26 148 3.15e-14 67.4
MS.gene08774.t1 AT2G46030 31.707 123 82 2 48 168 29 151 5.10e-14 67.0
MS.gene08774.t1 AT2G46030 31.707 123 82 2 48 168 29 151 5.10e-14 67.0
MS.gene08774.t1 AT1G17280 27.559 127 85 1 22 141 5 131 5.43e-14 67.8
MS.gene08774.t1 AT4G36800 31.387 137 86 5 7 138 15 148 1.01e-13 65.9
MS.gene08774.t1 AT4G36800 31.387 137 86 5 7 138 15 148 1.01e-13 65.9
MS.gene08774.t1 AT2G46030 28.105 153 105 3 18 168 71 220 1.21e-13 67.0
MS.gene08774.t1 AT5G41340 30.081 123 84 2 48 168 26 148 2.57e-13 65.1
MS.gene08774.t1 AT1G63800 29.268 123 85 2 48 168 11 133 5.89e-13 63.5
MS.gene08774.t1 AT1G63800 29.268 123 85 2 48 168 26 148 6.54e-13 63.9
MS.gene08774.t1 AT2G18600 31.387 137 85 6 8 138 16 149 7.80e-13 63.5
MS.gene08774.t1 AT2G18600 31.387 137 85 6 8 138 16 149 7.80e-13 63.5
MS.gene08774.t1 AT5G50430 28.682 129 75 3 22 141 5 125 7.81e-13 64.7
MS.gene08774.t1 AT5G50430 28.682 129 75 3 22 141 5 125 7.81e-13 64.7
MS.gene08774.t1 AT1G17280 28.682 129 75 3 22 141 5 125 8.60e-13 64.3
MS.gene08774.t1 AT1G17280 28.682 129 75 3 22 141 5 125 8.60e-13 64.3
MS.gene08774.t1 AT1G17280 28.682 129 75 3 22 141 5 125 8.60e-13 64.3
MS.gene08774.t1 AT1G17280 28.682 129 75 3 22 141 5 125 8.60e-13 64.3
MS.gene08774.t1 AT1G17280 28.682 129 75 3 22 141 5 125 8.60e-13 64.3
MS.gene08774.t1 AT1G17280 28.682 129 75 3 22 141 5 125 8.60e-13 64.3
MS.gene08774.t1 AT1G17280 28.682 129 75 3 22 141 5 125 8.60e-13 64.3
MS.gene08774.t1 AT1G17280 28.682 129 75 3 22 141 5 125 8.60e-13 64.3
MS.gene08774.t1 AT5G41340 33.333 105 68 2 66 168 9 113 1.06e-12 62.8
MS.gene08774.t1 AT3G55380 32.323 99 52 2 50 133 34 132 3.31e-12 62.4
MS.gene08774.t1 AT3G15355 32.558 129 67 4 24 137 334 457 4.23e-12 63.5
MS.gene08774.t1 AT3G46460 35.366 82 40 1 67 135 8 89 6.64e-12 59.7
MS.gene08774.t1 AT3G46460 35.366 82 40 1 67 135 8 89 6.64e-12 59.7
MS.gene08774.t1 AT1G53025 31.250 128 68 4 25 137 274 396 2.22e-11 61.6
MS.gene08774.t1 AT1G53025 31.250 128 68 4 25 137 274 396 2.94e-11 61.2
MS.gene08774.t1 AT2G16920 29.268 123 77 3 25 137 853 975 7.61e-11 60.1
MS.gene08774.t1 AT2G16920 29.268 123 77 3 25 137 853 975 7.61e-11 60.1

Find 55 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTGCTCACTTATATT+TGG 0.167783 4.2:+12742616 MS.gene08774:CDS
CACTGGATCGCCACCATTAT+TGG 0.225414 4.2:+12739183 MS.gene08774:CDS
ACCTGATGGCCGTGTTAGTA+TGG 0.244162 4.2:+12741882 MS.gene08774:CDS
GGCATTGCTCACTTATATTT+GGG 0.312742 4.2:+12742617 MS.gene08774:CDS
ACAACCTCAGTGTCTGCTTC+TGG 0.313526 4.2:+12739075 MS.gene08774:CDS
GCAGACAATGCTGTTGTTCC+TGG 0.324492 4.2:+12742596 MS.gene08774:intron
CCTCCTCCTCATTGTTCTGC+TGG 0.384460 4.2:+12739138 MS.gene08774:CDS
TGAACCTGGGGTGCCAATAA+TGG 0.405631 4.2:-12739196 None:intergenic
AAATTATTCACTTGGCGAAT+CGG 0.430890 4.2:-12742682 None:intergenic
TCATTGTTCTGCTGGTCCCA+AGG 0.444109 4.2:+12739146 MS.gene08774:CDS
CTTATATCAAATTATTCACT+TGG 0.451971 4.2:-12742690 None:intergenic
AAAGAGAATTCAAAGAGAAA+TGG 0.471148 4.2:+12739098 MS.gene08774:CDS
TGGGAATATTGAAGGATGGT+TGG 0.488902 4.2:+12741902 MS.gene08774:CDS
CCCATACTAACACGGCCATC+AGG 0.491401 4.2:-12741883 None:intergenic
GAACTTCTTCCTCCTCCACC+TGG 0.495695 4.2:-12739033 None:intergenic
CATTGTTCTGCTGGTCCCAA+GGG 0.498720 4.2:+12739147 MS.gene08774:CDS
ATTGAAGGATGGTTGGAGTC+CGG 0.503896 4.2:+12741909 MS.gene08774:CDS
GTGATAGAGATTATCACCCT+TGG 0.504556 4.2:-12739163 None:intergenic
AGTACCTGGGGAGGCTTGAA+AGG 0.507084 4.2:-12739346 None:intergenic
AAGAATATGCCACCTTGGTA+AGG 0.510733 4.2:-12739295 None:intergenic
GCCACCATTATTGGCACCCC+AGG 0.511138 4.2:+12739192 MS.gene08774:CDS
TAGACAAACTTACAAGGGTC+GGG 0.513888 4.2:-12741982 None:intergenic
TGTTAGTATGGGAATATTGA+AGG 0.515562 4.2:+12741894 MS.gene08774:CDS
TGATAGAGATTATCACCCTT+GGG 0.525358 4.2:-12739162 None:intergenic
ACCTTAGTAATTGTTAGTGC+CGG 0.526027 4.2:-12741928 None:intergenic
CTATCCTTTCAAGCCTCCCC+AGG 0.527880 4.2:+12739342 MS.gene08774:CDS
GAAGAAGTTCAACATCATCA+TGG 0.530685 4.2:+12739046 MS.gene08774:CDS
CCAGCAGAACAATGAGGAGG+AGG 0.534364 4.2:-12739138 None:intergenic
AAATATAAGTGAGCAATGCC+AGG 0.535276 4.2:-12742614 None:intergenic
ATAGACAAACTTACAAGGGT+CGG 0.537656 4.2:-12741983 None:intergenic
AGGGTGATAATCTCTATCAC+TGG 0.546775 4.2:+12739166 MS.gene08774:CDS
GTGATGATACCAGGTGGAGG+AGG 0.546811 4.2:+12739024 None:intergenic
CCTGATGGCCGTGTTAGTAT+GGG 0.550021 4.2:+12741883 MS.gene08774:CDS
TCCGGCACTAACAATTACTA+AGG 0.562618 4.2:+12741927 MS.gene08774:CDS
GAAGCAGACACTGAGGTTGT+CGG 0.570928 4.2:-12739072 None:intergenic
ATGATGATATTGCTGCAGAA+TGG 0.574575 4.2:+12742654 MS.gene08774:CDS
CAAGGAAGAATATGCCACCT+TGG 0.575948 4.2:-12739300 None:intergenic
AAGAAGTTCAACATCATCAT+GGG 0.593129 4.2:+12739047 MS.gene08774:CDS
AGTATGGGAATATTGAAGGA+TGG 0.608029 4.2:+12741898 MS.gene08774:CDS
GGAGGTGAAGTGATGATACC+AGG 0.617355 4.2:+12739015 None:intergenic
CAGTAGGAAATATTATGTCA+AGG 0.623127 4.2:-12739318 None:intergenic
CACTGCAATGTAGAACCTGA+TGG 0.626397 4.2:+12741868 MS.gene08774:CDS
AATACCAATAGTACCTGGGG+AGG 0.638913 4.2:-12739355 None:intergenic
GAAGTGATGATACCAGGTGG+AGG 0.643516 4.2:+12739021 None:intergenic
CAGCAGAACAATGAGGAGGA+GGG 0.654094 4.2:-12739137 None:intergenic
TTTGTAGGAACACCTTACCA+AGG 0.659022 4.2:+12739283 MS.gene08774:intron
GGCTTGAAAGGATAGTCAGT+AGG 0.660032 4.2:-12739334 None:intergenic
CTTTCCAGAAGCAGACACTG+AGG 0.663553 4.2:-12739079 None:intergenic
CATCAGGTTCTACATTGCAG+TGG 0.676474 4.2:-12741867 None:intergenic
TCAATATTCCCATACTAACA+CGG 0.686088 4.2:-12741891 None:intergenic
ACCTGGGGTGCCAATAATGG+TGG 0.689217 4.2:-12739193 None:intergenic
GGACCAGCAGAACAATGAGG+AGG 0.696711 4.2:-12739141 None:intergenic
GTAGGAACACCTTACCAAGG+TGG 0.698581 4.2:+12739286 MS.gene08774:intron
TTGGGACCAGCAGAACAATG+AGG 0.713885 4.2:-12739144 None:intergenic
GGTGAAGTGATGATACCAGG+TGG 0.731443 4.2:+12739018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGGTTTAAAAAATAAAA+AGG + chr4.2:12741739-12741758 MS.gene08774:intron 10.0%
!! AAATTTCATTAATGATAGAA+AGG - chr4.2:12741457-12741476 None:intergenic 15.0%
!! AATTCTATATTCATTTAGTT+TGG + chr4.2:12739714-12739733 MS.gene08774:intron 15.0%
!! TACAAACAAAATGTAAATAT+TGG - chr4.2:12742475-12742494 None:intergenic 15.0%
!! TCAAGTAGAATTTAATAAAT+TGG + chr4.2:12741131-12741150 MS.gene08774:intron 15.0%
!!! ATAAAGTTGTTTTTTTTTGT+AGG + chr4.2:12739268-12739287 MS.gene08774:intron 15.0%
!!! ATAGTATTGAAAAGATAAAA+TGG - chr4.2:12741515-12741534 None:intergenic 15.0%
!! AATACATACCCTTAATTAAA+TGG - chr4.2:12742177-12742196 None:intergenic 20.0%
!! ATACATACCCTTAATTAAAT+GGG - chr4.2:12742176-12742195 None:intergenic 20.0%
!! TAATTTCCCCATTTAATTAA+GGG + chr4.2:12742166-12742185 MS.gene08774:intron 20.0%
!! TACTTGAAGAATTACATAAT+GGG - chr4.2:12741633-12741652 None:intergenic 20.0%
!! TCAAGAATGAATGTAATAAT+GGG + chr4.2:12739971-12739990 MS.gene08774:intron 20.0%
!! TTAAAAGACATAATCATTAG+CGG - chr4.2:12742410-12742429 None:intergenic 20.0%
!! TTAATTTCCCCATTTAATTA+AGG + chr4.2:12742165-12742184 MS.gene08774:intron 20.0%
!! TTGAAAATGATCTTACAAAA+GGG + chr4.2:12742228-12742247 MS.gene08774:intron 20.0%
!! TTTGAAAATGATCTTACAAA+AGG + chr4.2:12742227-12742246 MS.gene08774:intron 20.0%
!!! CATTTTATACAAATACTGAT+AGG - chr4.2:12741571-12741590 None:intergenic 20.0%
!!! CTAATATTGACTGAAAAAAA+AGG + chr4.2:12740974-12740993 MS.gene08774:intron 20.0%
!!! GTAAAATAATTTTATACCGA+CGG - chr4.2:12739487-12739506 None:intergenic 20.0%
!!! TATATTCATTTAGTTTGGTA+AGG + chr4.2:12739719-12739738 MS.gene08774:intron 20.0%
!!! TTATAGGCTTTGAAAATAAA+GGG - chr4.2:12741660-12741679 None:intergenic 20.0%
!!! TTTATAGGCTTTGAAAATAA+AGG - chr4.2:12741661-12741680 None:intergenic 20.0%
! AAACACAGTAGAATTAAATG+AGG + chr4.2:12740392-12740411 MS.gene08774:intron 25.0%
! AAAGAAAACAAAGAAGGTAA+GGG + chr4.2:12740479-12740498 MS.gene08774:intron 25.0%
! AAAGAGAATTCAAAGAGAAA+TGG + chr4.2:12739098-12739117 MS.gene08774:CDS 25.0%
! AATAAGAACAAACAGGAAAA+TGG + chr4.2:12739930-12739949 MS.gene08774:intron 25.0%
! AATAGTTCACTTTATCAATC+TGG - chr4.2:12740111-12740130 None:intergenic 25.0%
! ACTAAAAGGATCTTAGATAT+AGG - chr4.2:12742037-12742056 None:intergenic 25.0%
! ATAGAAAGGAAAAATAGCAA+AGG - chr4.2:12741443-12741462 None:intergenic 25.0%
! ATTACAAGATATTTAGTCAC+TGG + chr4.2:12740837-12740856 MS.gene08774:intron 25.0%
! ATTGAAAAGATAAAATGGAG+AGG - chr4.2:12741510-12741529 None:intergenic 25.0%
! CAGACAACAAAAAATTTATG+GGG + chr4.2:12741769-12741788 MS.gene08774:intron 25.0%
! CTAAAAGGATCTTAGATATA+GGG - chr4.2:12742036-12742055 None:intergenic 25.0%
! GCAGACAACAAAAAATTTAT+GGG + chr4.2:12741768-12741787 MS.gene08774:intron 25.0%
! GGATTTCATTAATGATAGAA+AGG - chr4.2:12741489-12741508 None:intergenic 25.0%
! GGGAAAAGAAAAATTTACAA+AGG + chr4.2:12742248-12742267 MS.gene08774:intron 25.0%
! GTACTTGAAGAATTACATAA+TGG - chr4.2:12741634-12741653 None:intergenic 25.0%
! GTATGTTAGGAAAAATAGAA+AGG + chr4.2:12741243-12741262 MS.gene08774:intron 25.0%
! GTCAAGAATGAATGTAATAA+TGG + chr4.2:12739970-12739989 MS.gene08774:intron 25.0%
! TAAGCAAAATAAGAACAAAC+AGG + chr4.2:12739923-12739942 MS.gene08774:intron 25.0%
! TACATACCCTTAATTAAATG+GGG - chr4.2:12742175-12742194 None:intergenic 25.0%
! TGAAAAAAAAGGTTATTCAC+TGG + chr4.2:12740985-12741004 MS.gene08774:intron 25.0%
! TGCAGACAACAAAAAATTTA+TGG + chr4.2:12741767-12741786 MS.gene08774:intron 25.0%
! TTACAAGATATTTAGTCACT+GGG + chr4.2:12740838-12740857 MS.gene08774:intron 25.0%
!! ATGATTATGTCTTTTAACAC+TGG + chr4.2:12742413-12742432 MS.gene08774:intron 25.0%
!! TTTCTGAAAGAAAACAAAGA+AGG + chr4.2:12740473-12740492 MS.gene08774:intron 25.0%
!!! AATCCTTCTCTTTTTCATAA+AGG + chr4.2:12740208-12740227 MS.gene08774:intron 25.0%
!!! ATCCTTCTCTTTTTCATAAA+GGG + chr4.2:12740209-12740228 MS.gene08774:intron 25.0%
!!! ATTGTTTCTTTTTCTCAAGT+TGG + chr4.2:12739387-12739406 MS.gene08774:intron 25.0%
!!! TTTTTTTTGAAGAAGCTACT+TGG - chr4.2:12742535-12742554 None:intergenic 25.0%
AAAAAGCAGCATGGTTTAAT+AGG + chr4.2:12742379-12742398 MS.gene08774:intron 30.0%
AAAAATACCAATAGTACCTG+GGG - chr4.2:12739361-12739380 None:intergenic 30.0%
AAGAAGTTCAACATCATCAT+GGG + chr4.2:12739047-12739066 MS.gene08774:CDS 30.0%
ACAAAGGAGTCTTACATATA+GGG + chr4.2:12742264-12742283 MS.gene08774:intron 30.0%
ACAACAAAAAATTTATGGGG+AGG + chr4.2:12741772-12741791 MS.gene08774:intron 30.0%
AGAGAATAGACAAACTTACA+AGG - chr4.2:12741991-12742010 None:intergenic 30.0%
ATAATTCTTAAAGGCAAGAC+TGG + chr4.2:12740063-12740082 MS.gene08774:intron 30.0%
ATCCCTTTATGAAAAAGAGA+AGG - chr4.2:12740214-12740233 None:intergenic 30.0%
ATTCTCGTGCATTAACTAAA+AGG - chr4.2:12742051-12742070 None:intergenic 30.0%
ATTGTTTATTGCTTCGAAAG+TGG - chr4.2:12740932-12740951 None:intergenic 30.0%
ATTTAATCTTTATGCTCCGT+CGG + chr4.2:12739468-12739487 MS.gene08774:intron 30.0%
CAAAAATACCAATAGTACCT+GGG - chr4.2:12739362-12739381 None:intergenic 30.0%
CAGTAGGAAATATTATGTCA+AGG - chr4.2:12739321-12739340 None:intergenic 30.0%
GAAAGAAAACAAAGAAGGTA+AGG + chr4.2:12740478-12740497 MS.gene08774:intron 30.0%
GAGAATAGACAAACTTACAA+GGG - chr4.2:12741990-12742009 None:intergenic 30.0%
GCTCAAGTCATAATTCTTAA+AGG + chr4.2:12740054-12740073 MS.gene08774:intron 30.0%
GTCAGAAAAAGAATTCTGTT+AGG + chr4.2:12741351-12741370 MS.gene08774:intron 30.0%
TACAAAGGAGTCTTACATAT+AGG + chr4.2:12742263-12742282 MS.gene08774:intron 30.0%
TCAATATTCCCATACTAACA+CGG - chr4.2:12741894-12741913 None:intergenic 30.0%
TGAAGACTAGAAAGTAGTTT+AGG + chr4.2:12740318-12740337 MS.gene08774:intron 30.0%
TGAATTGATACTTAAGCCAT+AGG + chr4.2:12739796-12739815 MS.gene08774:intron 30.0%
TGCTATTGACAACATAGATA+GGG + chr4.2:12740797-12740816 MS.gene08774:intron 30.0%
TGTTAGTATGGGAATATTGA+AGG + chr4.2:12741894-12741913 MS.gene08774:CDS 30.0%
TTCTTTCAGAAATGACTACT+AGG - chr4.2:12740465-12740484 None:intergenic 30.0%
TTGTTTATTGCTTCGAAAGT+GGG - chr4.2:12740931-12740950 None:intergenic 30.0%
! AAATATGGAGAGTGTATGTT+AGG + chr4.2:12741230-12741249 MS.gene08774:intron 30.0%
! AACATACACTCTCCATATTT+TGG - chr4.2:12741230-12741249 None:intergenic 30.0%
! ACATACACTCTCCATATTTT+GGG - chr4.2:12741229-12741248 None:intergenic 30.0%
! AGAATGAATGTAATAATGGG+TGG + chr4.2:12739974-12739993 MS.gene08774:intron 30.0%
! CATTTTCCAAGAATTATGCT+TGG - chr4.2:12740171-12740190 None:intergenic 30.0%
! GAAATGACTACTAGGTTTTA+TGG - chr4.2:12740457-12740476 None:intergenic 30.0%
! TGAAGAATTACATAATGGGA+AGG - chr4.2:12741629-12741648 None:intergenic 30.0%
! TTCAAGATCATGTCATTTGA+AGG + chr4.2:12741073-12741092 MS.gene08774:intron 30.0%
!! AGGTACTATTGGTATTTTTG+CGG + chr4.2:12739362-12739381 MS.gene08774:intron 30.0%
!! TCTCTTTTTCATAAAGGGAT+CGG + chr4.2:12740214-12740233 MS.gene08774:intron 30.0%
AAAGTGGGATAGTAGATAGA+GGG + chr4.2:12740282-12740301 MS.gene08774:intron 35.0%
AAATATAAGTGAGCAATGCC+AGG - chr4.2:12742617-12742636 None:intergenic 35.0%
AAATGGCTACCTATACCAAA+AGG + chr4.2:12739947-12739966 MS.gene08774:intron 35.0%
AATGGCTACCTATACCAAAA+GGG + chr4.2:12739948-12739967 MS.gene08774:intron 35.0%
ACATGCTACAGGAAGTTTAT+AGG - chr4.2:12741676-12741695 None:intergenic 35.0%
ACCAAAAAGCCGAATAAATC+TGG + chr4.2:12740612-12740631 MS.gene08774:intron 35.0%
ACCTTAGTAATTGTTAGTGC+CGG - chr4.2:12741931-12741950 None:intergenic 35.0%
ACTTCTGTTATGTTGGGATT+GGG + chr4.2:12741313-12741332 MS.gene08774:intron 35.0%
AGAGCTAGAAATGAGAGTTT+AGG + chr4.2:12741169-12741188 MS.gene08774:intron 35.0%
AGTATGGGAATATTGAAGGA+TGG + chr4.2:12741898-12741917 MS.gene08774:CDS 35.0%
AGTCTTACATATAGGGATGA+AGG + chr4.2:12742271-12742290 MS.gene08774:intron 35.0%
ATAGACAAACTTACAAGGGT+CGG - chr4.2:12741986-12742005 None:intergenic 35.0%
ATGATGATATTGCTGCAGAA+TGG + chr4.2:12742654-12742673 MS.gene08774:CDS 35.0%
CAACATAGATAGGGATAGTA+TGG + chr4.2:12740806-12740825 MS.gene08774:intron 35.0%
CCTGCTAGTTCAATTTAACA+AGG - chr4.2:12741825-12741844 None:intergenic 35.0%
CCTTGTTAAATTGAACTAGC+AGG + chr4.2:12741822-12741841 MS.gene08774:intron 35.0%
CTATCTATGTTGTCAATAGC+AGG - chr4.2:12740798-12740817 None:intergenic 35.0%
CTGCTATTGACAACATAGAT+AGG + chr4.2:12740796-12740815 MS.gene08774:intron 35.0%
GAAGAAGTTCAACATCATCA+TGG + chr4.2:12739046-12739065 MS.gene08774:CDS 35.0%
GACTAGAAAGTAGTTTAGGA+AGG + chr4.2:12740322-12740341 MS.gene08774:intron 35.0%
GATCTTAGATATAGGGACAA+AGG - chr4.2:12742029-12742048 None:intergenic 35.0%
GCAAAAATACCAATAGTACC+TGG - chr4.2:12739363-12739382 None:intergenic 35.0%
GGCATTGCTCACTTATATTT+GGG + chr4.2:12742617-12742636 MS.gene08774:CDS 35.0%
TAAAGTGGGATAGTAGATAG+AGG + chr4.2:12740281-12740300 MS.gene08774:intron 35.0%
TATAGGGATGAAGGTTTACA+TGG + chr4.2:12742280-12742299 MS.gene08774:intron 35.0%
TATCCCACTTTAGCAGTTTA+GGG - chr4.2:12740273-12740292 None:intergenic 35.0%
TGACTCACTTCTGTTATGTT+GGG + chr4.2:12741307-12741326 MS.gene08774:intron 35.0%
TGATAGAGATTATCACCCTT+GGG - chr4.2:12739165-12739184 None:intergenic 35.0%
TGGCATTGCTCACTTATATT+TGG + chr4.2:12742616-12742635 MS.gene08774:CDS 35.0%
TTAACGCGAGAACACATTAT+TGG + chr4.2:12739576-12739595 MS.gene08774:intron 35.0%
TTACAGCTGATATGTCACAT+TGG - chr4.2:12740731-12740750 None:intergenic 35.0%
TTATGGTTGAGATGATACCA+GGG + chr4.2:12740361-12740380 MS.gene08774:intron 35.0%
TTCTTGCATTCAGAAGCAAA+AGG - chr4.2:12742323-12742342 None:intergenic 35.0%
TTGATATAGCGAAAGTTCAC+TGG + chr4.2:12741038-12741057 MS.gene08774:intron 35.0%
TTTATGGTTGAGATGATACC+AGG + chr4.2:12740360-12740379 MS.gene08774:intron 35.0%
! ACATTCATTCTTGACCCTTT+TGG - chr4.2:12739965-12739984 None:intergenic 35.0%
! ACCAGATTTATTCGGCTTTT+TGG - chr4.2:12740616-12740635 None:intergenic 35.0%
! ATTCTTGACCCTTTTGGTAT+AGG - chr4.2:12739959-12739978 None:intergenic 35.0%
! CTTTCTAGTCTTCACAATAG+AGG - chr4.2:12740312-12740331 None:intergenic 35.0%
! TCATTTTCCCTGAGTACTTT+TGG - chr4.2:12740593-12740612 None:intergenic 35.0%
! TTTTGCTTACCTATCCTACT+CGG - chr4.2:12739912-12739931 None:intergenic 35.0%
!! ACTACTAGGTTTTATGGTAG+TGG - chr4.2:12740451-12740470 None:intergenic 35.0%
!! ATTTAGTTTGGTAAGGCGAT+GGG + chr4.2:12739726-12739745 MS.gene08774:intron 35.0%
!! TTCTCTAGCTTTACTCAATG+TGG - chr4.2:12739776-12739795 None:intergenic 35.0%
!! TTTGGGATGGTTTTACTTGT+GGG + chr4.2:12740032-12740051 MS.gene08774:intron 35.0%
!!! CAACTCATGGTTAGTCTTTT+GGG + chr4.2:12740015-12740034 MS.gene08774:intron 35.0%
!!! TCAACTCATGGTTAGTCTTT+TGG + chr4.2:12740014-12740033 MS.gene08774:intron 35.0%
!!! TTTTGGGATGGTTTTACTTG+TGG + chr4.2:12740031-12740050 MS.gene08774:intron 35.0%
AAGAATATGCCACCTTGGTA+AGG - chr4.2:12739298-12739317 None:intergenic 40.0%
AAGTGAGTTTCACTTTCGCA+TGG + chr4.2:12740544-12740563 MS.gene08774:intron 40.0%
AATGATGAGCTGGCAGAAAA+GGG + chr4.2:12741274-12741293 MS.gene08774:intron 40.0%
ACTTGTCTGTTCGAAGAGTT+TGG + chr4.2:12741716-12741735 MS.gene08774:intron 40.0%
AGGGTGATAATCTCTATCAC+TGG + chr4.2:12739166-12739185 MS.gene08774:CDS 40.0%
AGTTTAGGAAGGCTTCACTT+TGG + chr4.2:12740333-12740352 MS.gene08774:intron 40.0%
ATCCCACTTTAGCAGTTTAG+GGG - chr4.2:12740272-12740291 None:intergenic 40.0%
CAAGATATTTAGTCACTGGG+TGG + chr4.2:12740841-12740860 MS.gene08774:intron 40.0%
CACATCGTGTACCCAAAATA+TGG + chr4.2:12741215-12741234 MS.gene08774:intron 40.0%
CACTTCTGTTATGTTGGGAT+TGG + chr4.2:12741312-12741331 MS.gene08774:intron 40.0%
CATGTCTTGAAAAAGCAGCA+TGG + chr4.2:12742370-12742389 MS.gene08774:intron 40.0%
CCCTGTTCACCAGATTTATT+CGG - chr4.2:12740624-12740643 None:intergenic 40.0%
CCGAATAAATCTGGTGAACA+GGG + chr4.2:12740621-12740640 MS.gene08774:intron 40.0%
CGAATAAATCTGGTGAACAG+GGG + chr4.2:12740622-12740641 MS.gene08774:intron 40.0%
CTATCCCACTTTAGCAGTTT+AGG - chr4.2:12740274-12740293 None:intergenic 40.0%
CTGTTCGAAGAGTTTGGTAT+AGG + chr4.2:12741722-12741741 MS.gene08774:intron 40.0%
CTTCTGTTATGTTGGGATTG+GGG + chr4.2:12741314-12741333 MS.gene08774:intron 40.0%
GAAGAAGCTACTTGGAGTAT+CGG - chr4.2:12742527-12742546 None:intergenic 40.0%
GAATAAATCTGGTGAACAGG+GGG + chr4.2:12740623-12740642 MS.gene08774:intron 40.0%
GCTTCTGAATGCAAGAAAAG+AGG + chr4.2:12742326-12742345 MS.gene08774:intron 40.0%
GGGATACCAAGCATAATTCT+TGG + chr4.2:12740162-12740181 MS.gene08774:intron 40.0%
GTCATTTGAAGGAGCTAACT+GGG + chr4.2:12741084-12741103 MS.gene08774:intron 40.0%
GTCTTCGGATCTTCACAAAA+CGG + chr4.2:12740511-12740530 MS.gene08774:intron 40.0%
GTGACTCACTTCTGTTATGT+TGG + chr4.2:12741306-12741325 MS.gene08774:intron 40.0%
GTGATAGAGATTATCACCCT+TGG - chr4.2:12739166-12739185 None:intergenic 40.0%
GTTTAGGAAGGCTTCACTTT+GGG + chr4.2:12740334-12740353 MS.gene08774:intron 40.0%
TAGACAAACTTACAAGGGTC+GGG - chr4.2:12741985-12742004 None:intergenic 40.0%
TCCGGCACTAACAATTACTA+AGG + chr4.2:12741927-12741946 MS.gene08774:CDS 40.0%
TCTTCGGATCTTCACAAAAC+GGG + chr4.2:12740512-12740531 MS.gene08774:intron 40.0%
TGGGAATATTGAAGGATGGT+TGG + chr4.2:12741902-12741921 MS.gene08774:CDS 40.0%
TGTTGTTAATCCTAGTGGTG+GGG + chr4.2:12740237-12740256 MS.gene08774:intron 40.0%
TTTGTAGGAACACCTTACCA+AGG + chr4.2:12739283-12739302 MS.gene08774:intron 40.0%
! ACCATTCAGCTTAGGTTGTT+TGG + chr4.2:12739227-12739246 MS.gene08774:intron 40.0%
! CCATTCAGCTTAGGTTGTTT+GGG + chr4.2:12739228-12739247 MS.gene08774:intron 40.0%
! GCTTCACTTTGGGAAGTTTA+TGG + chr4.2:12740344-12740363 MS.gene08774:intron 40.0%
! GTGTTGTTAATCCTAGTGGT+GGG + chr4.2:12740236-12740255 MS.gene08774:intron 40.0%
! TGTCATTTGAAGGAGCTAAC+TGG + chr4.2:12741083-12741102 MS.gene08774:intron 40.0%
!! ATCGGTGTTGTTAATCCTAG+TGG + chr4.2:12740232-12740251 MS.gene08774:intron 40.0%
!! CATATTTTGGGTACACGATG+TGG - chr4.2:12741217-12741236 None:intergenic 40.0%
!! CATTTAGTTTGGTAAGGCGA+TGG + chr4.2:12739725-12739744 MS.gene08774:intron 40.0%
!! GTAACAGTGATTTGCTCAGA+AGG - chr4.2:12741607-12741626 None:intergenic 40.0%
!! TCTCAAGTTGGTGTTTGCTT+TGG + chr4.2:12739399-12739418 MS.gene08774:intron 40.0%
!!! CATGCTGCTTTTTCAAGACA+TGG - chr4.2:12742372-12742391 None:intergenic 40.0%
!!! TCATGGTTAGTCTTTTGGGA+TGG + chr4.2:12740019-12740038 MS.gene08774:intron 40.0%
AAATGAGGAGCAGAGAACAG+AGG + chr4.2:12740407-12740426 MS.gene08774:intron 45.0%
AAGGAGCTAACTGGGTCAAT+GGG + chr4.2:12741092-12741111 MS.gene08774:intron 45.0%
AATACCAATAGTACCTGGGG+AGG - chr4.2:12739358-12739377 None:intergenic 45.0%
AATGGTGAAGATGGTGAACC+TGG - chr4.2:12739213-12739232 None:intergenic 45.0%
ACTGGAGTAACATCCTCCTT+GGG + chr4.2:12740081-12740100 MS.gene08774:intron 45.0%
ATAGGATTCTCCCACCCAAT+AGG + chr4.2:12739814-12739833 MS.gene08774:intron 45.0%
ATGATGAGCTGGCAGAAAAG+GGG + chr4.2:12741275-12741294 MS.gene08774:intron 45.0%
ATGGTGAAGATGGTGAACCT+GGG - chr4.2:12739212-12739231 None:intergenic 45.0%
ATTGAAGGATGGTTGGAGTC+CGG + chr4.2:12741909-12741928 MS.gene08774:CDS 45.0%
CAAGGAAGAATATGCCACCT+TGG - chr4.2:12739303-12739322 None:intergenic 45.0%
CACTGCAATGTAGAACCTGA+TGG + chr4.2:12741868-12741887 MS.gene08774:CDS 45.0%
CAGAATGCTCTCTCAACTCA+TGG + chr4.2:12740002-12740021 MS.gene08774:intron 45.0%
CAGGTGATCACACGTGATAA+TGG - chr4.2:12740779-12740798 None:intergenic 45.0%
CATCAGGTTCTACATTGCAG+TGG - chr4.2:12741870-12741889 None:intergenic 45.0%
CCATCTTCACCATTCAGCTT+AGG + chr4.2:12739219-12739238 MS.gene08774:intron 45.0%
CCCAAACAACCTAAGCTGAA+TGG - chr4.2:12739231-12739250 None:intergenic 45.0%
CCTAAGCTGAATGGTGAAGA+TGG - chr4.2:12739222-12739241 None:intergenic 45.0%
CTTCGGATCTTCACAAAACG+GGG + chr4.2:12740513-12740532 MS.gene08774:intron 45.0%
GAATGATGAGCTGGCAGAAA+AGG + chr4.2:12741273-12741292 MS.gene08774:intron 45.0%
GACCCCTAAACTGCTAAAGT+GGG + chr4.2:12740267-12740286 MS.gene08774:intron 45.0%
GCATAGCTCTCAGTTGTATC+AGG + chr4.2:12741407-12741426 MS.gene08774:intron 45.0%
GCCGAATAAATCTGGTGAAC+AGG + chr4.2:12740620-12740639 MS.gene08774:intron 45.0%
GGAAGAAGAGAATGATGAGC+TGG + chr4.2:12741264-12741283 MS.gene08774:intron 45.0%
GGCTTGAAAGGATAGTCAGT+AGG - chr4.2:12739337-12739356 None:intergenic 45.0%
GTTATGCTTCACCCCTTCTA+TGG + chr4.2:12740136-12740155 MS.gene08774:intron 45.0%
GTTGAGAGAAGACATGCTAC+AGG - chr4.2:12741687-12741706 None:intergenic 45.0%
TAGAGAAGAGTCCATCCCAA+AGG - chr4.2:12739845-12739864 None:intergenic 45.0%
TATTGGGTGGGAGAATCCTA+TGG - chr4.2:12739815-12739834 None:intergenic 45.0%
TGACCCCTAAACTGCTAAAG+TGG + chr4.2:12740266-12740285 MS.gene08774:intron 45.0%
TGGTATCCCCATCCATAGAA+GGG - chr4.2:12740151-12740170 None:intergenic 45.0%
TTATGTTGGGATTGGGGTAG+TGG + chr4.2:12741320-12741339 MS.gene08774:intron 45.0%
TTATTGAGAGCTTGCCGAGT+AGG + chr4.2:12739895-12739914 MS.gene08774:intron 45.0%
TTCGGATCTTCACAAAACGG+GGG + chr4.2:12740514-12740533 MS.gene08774:intron 45.0%
TTGGTATCCCCATCCATAGA+AGG - chr4.2:12740152-12740171 None:intergenic 45.0%
! ACTGTGTTTCTACTCAACCC+TGG - chr4.2:12740381-12740400 None:intergenic 45.0%
! GGAGAGTGGACTCAAATAAG+AGG - chr4.2:12740910-12740929 None:intergenic 45.0%
! TTATCAATCTGGCTTCCCCA+AGG - chr4.2:12740100-12740119 None:intergenic 45.0%
! TTGGTGTTTGCTTTGGCATG+TGG + chr4.2:12739406-12739425 MS.gene08774:intron 45.0%
!! CATGAGTTGAGAGAGCATTC+TGG - chr4.2:12740004-12740023 None:intergenic 45.0%
!! CTGCTGACCAAAAGTACTCA+GGG + chr4.2:12740583-12740602 MS.gene08774:intron 45.0%
!! GGTGTTGTTAATCCTAGTGG+TGG + chr4.2:12740235-12740254 MS.gene08774:intron 45.0%
!!! GCTGCTTTTTCAAGACATGG+AGG - chr4.2:12742369-12742388 None:intergenic 45.0%
AAAGGACAGGCCTATTGGGT+GGG - chr4.2:12739827-12739846 None:intergenic 50.0%
AAGAGTCCATCCCAAAGGAC+AGG - chr4.2:12739840-12739859 None:intergenic 50.0%
ACAACCTCAGTGTCTGCTTC+TGG + chr4.2:12739075-12739094 MS.gene08774:CDS 50.0%
ACCCAATAGGCCTGTCCTTT+GGG + chr4.2:12739827-12739846 MS.gene08774:intron 50.0%
ACCTGATGGCCGTGTTAGTA+TGG + chr4.2:12741882-12741901 MS.gene08774:CDS 50.0%
ATCCCAAAGGACAGGCCTAT+TGG - chr4.2:12739832-12739851 None:intergenic 50.0%
CACTGGATCGCCACCATTAT+TGG + chr4.2:12739183-12739202 MS.gene08774:CDS 50.0%
CACTTTCGCATGGTGCAGAA+CGG + chr4.2:12740554-12740573 MS.gene08774:intron 50.0%
CAGCAGAACAATGAGGAGGA+GGG - chr4.2:12739140-12739159 None:intergenic 50.0%
CATTGTTCTGCTGGTCCCAA+GGG + chr4.2:12739147-12739166 MS.gene08774:CDS 50.0%
CCTGATGGCCGTGTTAGTAT+GGG + chr4.2:12741883-12741902 MS.gene08774:CDS 50.0%
CTGGAGTAACATCCTCCTTG+GGG + chr4.2:12740082-12740101 MS.gene08774:intron 50.0%
CTTCACCCCTTCTATGGATG+GGG + chr4.2:12740142-12740161 MS.gene08774:intron 50.0%
CTTTCCAGAAGCAGACACTG+AGG - chr4.2:12739082-12739101 None:intergenic 50.0%
GAAGCAGACACTGAGGTTGT+CGG - chr4.2:12739075-12739094 None:intergenic 50.0%
GAAGGAGCTAACTGGGTCAA+TGG + chr4.2:12741091-12741110 MS.gene08774:intron 50.0%
GACTGGAGTAACATCCTCCT+TGG + chr4.2:12740080-12740099 MS.gene08774:intron 50.0%
GCAGACAATGCTGTTGTTCC+TGG + chr4.2:12742596-12742615 MS.gene08774:intron 50.0%
GCTTCACCCCTTCTATGGAT+GGG + chr4.2:12740141-12740160 MS.gene08774:intron 50.0%
GGTATCCCCATCCATAGAAG+GGG - chr4.2:12740150-12740169 None:intergenic 50.0%
GTAGGAACACCTTACCAAGG+TGG + chr4.2:12739286-12739305 MS.gene08774:intron 50.0%
TAAGGGAGCAAGCGAGTCTT+CGG + chr4.2:12740496-12740515 MS.gene08774:intron 50.0%
TCATTGTTCTGCTGGTCCCA+AGG + chr4.2:12739146-12739165 MS.gene08774:CDS 50.0%
TCCCAAAGGACAGGCCTATT+GGG - chr4.2:12739831-12739850 None:intergenic 50.0%
TGCTTCACCCCTTCTATGGA+TGG + chr4.2:12740140-12740159 MS.gene08774:intron 50.0%
TGGTGAAGATGGTGAACCTG+GGG - chr4.2:12739211-12739230 None:intergenic 50.0%
TTGCTTCGAAAGTGGGAGAG+TGG - chr4.2:12740924-12740943 None:intergenic 50.0%
TTGGGACCAGCAGAACAATG+AGG - chr4.2:12739147-12739166 None:intergenic 50.0%
! AATAGGCCTGTCCTTTGGGA+TGG + chr4.2:12739831-12739850 MS.gene08774:intron 50.0%
! TGAACCTGGGGTGCCAATAA+TGG - chr4.2:12739199-12739218 None:intergenic 50.0%
!! ACAGGGGCATTTGGCATCAA+AGG + chr4.2:12740649-12740668 MS.gene08774:intron 50.0%
!! ATGGTAGTGGTGACGACTAC+CGG - chr4.2:12740438-12740457 None:intergenic 50.0%
!! GCTGCTGACCAAAAGTACTC+AGG + chr4.2:12740582-12740601 MS.gene08774:intron 50.0%
AGTACCTGGGGAGGCTTGAA+AGG - chr4.2:12739349-12739368 None:intergenic 55.0%
CAAAGGACAGGCCTATTGGG+TGG - chr4.2:12739828-12739847 None:intergenic 55.0%
CAAGCCTCCCCAGGTACTAT+TGG + chr4.2:12739351-12739370 MS.gene08774:intron 55.0%
CACCCAATAGGCCTGTCCTT+TGG + chr4.2:12739826-12739845 MS.gene08774:intron 55.0%
CCAGCAGAACAATGAGGAGG+AGG - chr4.2:12739141-12739160 None:intergenic 55.0%
CCCATACTAACACGGCCATC+AGG - chr4.2:12741886-12741905 None:intergenic 55.0%
CCTCCTCCTCATTGTTCTGC+TGG + chr4.2:12739138-12739157 MS.gene08774:CDS 55.0%
CTATCCTTTCAAGCCTCCCC+AGG + chr4.2:12739342-12739361 MS.gene08774:CDS 55.0%
GAACTTCTTCCTCCTCCACC+TGG - chr4.2:12739036-12739055 None:intergenic 55.0%
GAGAGCTTGCCGAGTAGGAT+AGG + chr4.2:12739900-12739919 MS.gene08774:intron 55.0%
GATCTTCACAAAACGGGGGC+AGG + chr4.2:12740518-12740537 MS.gene08774:intron 55.0%
GCAGAGAACAGAGGAGAACC+CGG + chr4.2:12740416-12740435 MS.gene08774:intron 55.0%
GGACCAGCAGAACAATGAGG+AGG - chr4.2:12739144-12739163 None:intergenic 55.0%
GGCATCAAAGGTGGCTGTTG+TGG + chr4.2:12740661-12740680 MS.gene08774:intron 55.0%
TGGTGAACAGGGGGTGAACA+GGG + chr4.2:12740632-12740651 MS.gene08774:intron 55.0%
! ACCTGGGGTGCCAATAATGG+TGG - chr4.2:12739196-12739215 None:intergenic 55.0%
! GGGGCATTTGGCATCAAAGG+TGG + chr4.2:12740652-12740671 MS.gene08774:intron 55.0%
! GTTTGGTAAGGCGATGGGCT+TGG + chr4.2:12739731-12739750 MS.gene08774:intron 55.0%
! TAAGGCGATGGGCTTGGCTT+AGG + chr4.2:12739737-12739756 MS.gene08774:intron 55.0%
! TCAATCTGGCTTCCCCAAGG+AGG - chr4.2:12740097-12740116 None:intergenic 55.0%
! TGTTGGGATTGGGGTAGTGG+AGG + chr4.2:12741323-12741342 MS.gene08774:intron 55.0%
!! GATTGGGGTAGTGGAGGAAG+GGG + chr4.2:12741329-12741348 MS.gene08774:intron 55.0%
!! GGATTGGGGTAGTGGAGGAA+GGG + chr4.2:12741328-12741347 MS.gene08774:intron 55.0%
!! TGGTAGTGGTGACGACTACC+GGG - chr4.2:12740437-12740456 None:intergenic 55.0%
CTGGTGAACAGGGGGTGAAC+AGG + chr4.2:12740631-12740650 MS.gene08774:intron 60.0%
GCCACCATTATTGGCACCCC+AGG + chr4.2:12739192-12739211 MS.gene08774:CDS 60.0%
GGTGAACAGGGGGTGAACAG+GGG + chr4.2:12740633-12740652 MS.gene08774:intron 60.0%
GTCAACTGCTCCCCACCACT+AGG - chr4.2:12740250-12740269 None:intergenic 60.0%
!! AGGGGGTGAACAGGGGCATT+TGG + chr4.2:12740640-12740659 MS.gene08774:intron 60.0%
!! GGGATTGGGGTAGTGGAGGA+AGG + chr4.2:12741327-12741346 MS.gene08774:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 12739027 12742697 12739027 ID=MS.gene08774
chr4.2 mRNA 12739027 12742697 12739027 ID=MS.gene08774.t1;Parent=MS.gene08774
chr4.2 exon 12739027 12739213 12739027 ID=MS.gene08774.t1.exon1;Parent=MS.gene08774.t1
chr4.2 CDS 12739027 12739213 12739027 ID=cds.MS.gene08774.t1;Parent=MS.gene08774.t1
chr4.2 exon 12739290 12739363 12739290 ID=MS.gene08774.t1.exon2;Parent=MS.gene08774.t1
chr4.2 CDS 12739290 12739363 12739290 ID=cds.MS.gene08774.t1;Parent=MS.gene08774.t1
chr4.2 exon 12741844 12741991 12741844 ID=MS.gene08774.t1.exon3;Parent=MS.gene08774.t1
chr4.2 CDS 12741844 12741991 12741844 ID=cds.MS.gene08774.t1;Parent=MS.gene08774.t1
chr4.2 exon 12742600 12742697 12742600 ID=MS.gene08774.t1.exon4;Parent=MS.gene08774.t1
chr4.2 CDS 12742600 12742697 12742600 ID=cds.MS.gene08774.t1;Parent=MS.gene08774.t1
Gene Sequence

>MS.gene08774

ATGATACCAGGTGGAGGAGGAAGAAGTTCAACATCATCATGGGCACCGACAACCTCAGTGTCTGCTTCTGGAAAGAGAATTCAAAGAGAAATGGTTGAACTCAACAACGACCCTCCTCCTCATTGTTCTGCTGGTCCCAAGGGTGATAATCTCTATCACTGGATCGCCACCATTATTGGCACCCCAGGTTCACCATCTTCACCATTCAGCTTAGGTTGTTTGGGTTCAGATTGAATTTATCATAAAGTTGTTTTTTTTTGTAGGAACACCTTACCAAGGTGGCATATTCTTCCTTGACATAATATTTCCTACTGACTATCCTTTCAAGCCTCCCCAGGTACTATTGGTATTTTTGCGGCTATTGTTTCTTTTTCTCAAGTTGGTGTTTGCTTTGGCATGTGGAAGAATGTTAGCATGAAATGAAACTGTATTTTTATATAGATTTAATCTTTATGCTCCGTCGGTATAAAATTATTTTACATGTGCATCTAATAATGTGTTGTTACTTCATTTAATGTGATTGAAAACATGAGTTGTCATAATTATTAATTAACGCGAGAACACATTATTGGATGCATGTGTAAAATAACTTTACACTGTCAGTGTATAGAAATTAAAATCTTTTTATATAATGAATGCGTTAAGTTTCTTGAAGTTAATGCTTATTACTAATTGACATAAAGTTGTAATTCTATATTCATTTAGTTTGGTAAGGCGATGGGCTTGGCTTAGGCTTATATTGTGCACCACATTGAGTAAAGCTAGAGAATGAATTGATACTTAAGCCATAGGATTCTCCCACCCAATAGGCCTGTCCTTTGGGATGGACTCTTCTCTAGAGCTCAAGTCATACAAACACTTGATAGTTTTATTGAGAGCTTGCCGAGTAGGATAGGTAAGCAAAATAAGAACAAACAGGAAAATGGCTACCTATACCAAAAGGGTCAAGAATGAATGTAATAATGGGTGGTTAGCCAGAATGCTCTCTCAACTCATGGTTAGTCTTTTGGGATGGTTTTACTTGTGGGCTCAAGTCATAATTCTTAAAGGCAAGACTGGAGTAACATCCTCCTTGGGGAAGCCAGATTGATAAAGTGAACTATTCTACAGTTATGCTTCACCCCTTCTATGGATGGGGATACCAAGCATAATTCTTGGAAAATGCATAAAATTGTTTTTGCAATCCTTCTCTTTTTCATAAAGGGATCGGTGTTGTTAATCCTAGTGGTGGGGAGCAGTTGACCCCTAAACTGCTAAAGTGGGATAGTAGATAGAGGGAAAGCCTCTATTGTGAAGACTAGAAAGTAGTTTAGGAAGGCTTCACTTTGGGAAGTTTATGGTTGAGATGATACCAGGGTTGAGTAGAAACACAGTAGAATTAAATGAGGAGCAGAGAACAGAGGAGAACCCGGTAGTCGTCACCACTACCATAAAACCTAGTAGTCATTTCTGAAAGAAAACAAAGAAGGTAAGGGAGCAAGCGAGTCTTCGGATCTTCACAAAACGGGGGCAGGAGAAAGTGAGTTTCACTTTCGCATGGTGCAGAACGGCTGAAGCTGCTGACCAAAAGTACTCAGGGAAAATGACCAAAAAGCCGAATAAATCTGGTGAACAGGGGGTGAACAGGGGCATTTGGCATCAAAGGTGGCTGTTGTGGCAGTCAACACAATTTTCAGTCGAAATAGCTACTCTTGTATAATGCCAATGTGACATATCAGCTGTAAGTGTCGCAGCTGCACTGCTGCAATTCCATTATCACGTGTGATCACCTGCTATTGACAACATAGATAGGGATAGTATGGTAGCTGATATTACAAGATATTTAGTCACTGGGTGGTCTGTTATTGTGTTTAACAATTTTGAACTATTGAATCTTACATCCTCTTATTTGAGTCCACTCTCCCACTTTCGAAGCAATAAACAATATATCATTTTGTATGCATTCAACTAATATTGACTGAAAAAAAAGGTTATTCACTGGCTTGAATGAACATATTTTTTTGCTTCTGATTTGATATAGCGAAAGTTCACTGGCTAACTGTTTTGTTCAAGATCATGTCATTTGAAGGAGCTAACTGGGTCAATGGGAACTTTCAGTTGTTTTTCAAGTAGAATTTAATAAATTGGTTACTTGTATTTGATAGAGCTAGAAATGAGAGTTTAGGAGTTGATGACGTGTCTAGTCATCCACATCGTGTACCCAAAATATGGAGAGTGTATGTTAGGAAAAATAGAAAGGAAGAAGAGAATGATGAGCTGGCAGAAAAGGGGTGTGATGCGTGACTCACTTCTGTTATGTTGGGATTGGGGTAGTGGAGGAAGGGGTCAGAAAAAGAATTCTGTTAGGAGCAGAGATTTGTGATATTCTCTGAGTCAGTGAGCATAGCTCTCAGTTGTATCAGGAAGTTTGCTTCCTTTGCTATTTTTCCTTTCTATCATTAATGAAATTTGCTATTTTTCCTTTCTATCATTAATGAAATCCTCTCCATTTTATCTTTTCAATACTATTTGATGCTGTTACTGTGATTGATAGTTTTAGTACCTATCAGTATTTGTATAAAATGCTTGTTTTTTTCTCCTTCTGAGCAAATCACTGTTACCTTCCCATTATGTAATTCTTCAAGTACAGTCCCTTTATTTTCAAAGCCTATAAACTTCCTGTAGCATGTCTTCTCTCAACTTTTCATAAACTTGTCTGTTCGAAGAGTTTGGTATAGGTTTAAAAAATAAAAAGGCAATATGCAGACAACAAAAAATTTATGGGGAGGTAAAAGTAATTTAATTGTTGTGTATTGCCTTGTTAAATTGAACTAGCAGGTAGTCTTCAGAACTCGCATTTACCACTGCAATGTAGAACCTGATGGCCGTGTTAGTATGGGAATATTGAAGGATGGTTGGAGTCCGGCACTAACAATTACTAAGGTGCTACTTGCTGTTAGATCACTTTTGACAAATCCCGACCCTTGTAAGTTTGTCTATTCTCTTCTTGAATGCTACTACCTTTGTCCCTATATCTAAGATCCTTTTAGTTAATGCACGAGAATTAAGAAAAATGTTTCTATATTAAATTTGTCAACAATGTACAATCTCTTTTCAGAATTATACATCAATTATTAAGAGAGATAAATGATTAGTCTTTTAATTTCCCCATTTAATTAAGGGTATGTATTTTTGTGAAAGATCACTAATGTATCTTGTAATTTGAAAATGATCTTACAAAAGGGAAAAGAAAAATTTACAAAGGAGTCTTACATATAGGGATGAAGGTTTACATGGTACTTGTATACTTAGAGCCTTTTGCTTCTGAATGCAAGAAAAGAGGAAATTATTGTATTATTACCTCCATGTCTTGAAAAAGCAGCATGGTTTAATAGGACACTCCGCTAATGATTATGTCTTTTAACACTGGATTCAATTAATTTTCAAACATGCAGTATTAGTAATACCAATATTTACATTTTGTTTGTATAGAAAGTAATAACTACACTTAAAATCAGCCGATACTCCAAGTAGCTTCTTCAAAAAAAAAAAAAAAAATGATCTTAGAATGTAAAGTTGTTTTCGTTGTTGCAGACAATGCTGTTGTTCCTGGCATTGCTCACTTATATTTGGGAGACAGAGCAAAACATGATGATATTGCTGCAGAATGGACTATCCGATTCGCCAAGTGA
Protein sequence

>MS.gene08774.t1

MIPGGGGRSSTSSWAPTTSVSASGKRIQREMVELNNDPPPHCSAGPKGDNLYHWIATIIGTPGTPYQGGIFFLDIIFPTDYPFKPPQVVFRTRIYHCNVEPDGRVSMGILKDGWSPALTITKVLLAVRSLLTNPDPYNAVVPGIAHLYLGDRAKHDDIAAEWTIRFAK