Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85900.t1 | XP_003613959.1 | 98.8 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 9.00E-129 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85900.t1 | Q7KWX9 | 44.7 | 215 | 114 | 3 | 14 | 227 | 6 | 216 | 2.6e-44 | 180.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85900.t1 | B7FLI0 | 98.8 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 6.5e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85900 | MS.gene52227 | PPI |
| MS.gene85900 | MS.gene043239 | PPI |
| MS.gene85900 | MS.gene023858 | PPI |
| MS.gene85900 | MS.gene050621 | PPI |
| MS.gene85900 | MS.gene072735 | PPI |
| MS.gene85900 | MS.gene058147 | PPI |
| MS.gene85900 | MS.gene27712 | PPI |
| MS.gene85900 | MS.gene024734 | PPI |
| MS.gene85900 | MS.gene55323 | PPI |
| MS.gene85900 | MS.gene024471 | PPI |
| MS.gene85900 | MS.gene79599 | PPI |
| MS.gene85900 | MS.gene024674 | PPI |
| MS.gene85900 | MS.gene31317 | PPI |
| MS.gene85900 | MS.gene21656 | PPI |
| MS.gene85900 | MS.gene043576 | PPI |
| MS.gene85900 | MS.gene21710 | PPI |
| MS.gene85900 | MS.gene22822 | PPI |
| MS.gene85900 | MS.gene22316 | PPI |
| MS.gene85900 | MS.gene041852 | PPI |
| MS.gene85900 | MS.gene91519 | PPI |
| MS.gene85900 | MS.gene21912 | PPI |
| MS.gene42834 | MS.gene85900 | PPI |
| MS.gene85900 | MS.gene025936 | PPI |
| MS.gene85900 | MS.gene53118 | PPI |
| MS.gene85900 | MS.gene78555 | PPI |
| MS.gene85900 | MS.gene021698 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85900.t1 | MTR_5g043110 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 2.95e-177 | 486 |
| MS.gene85900.t1 | MTR_5g009430 | 90.909 | 121 | 11 | 0 | 120 | 240 | 22 | 142 | 4.57e-76 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85900.t1 | AT4G32175 | 72.458 | 236 | 65 | 0 | 1 | 236 | 1 | 236 | 1.51e-126 | 358 |
| MS.gene85900.t1 | AT2G25355 | 72.414 | 232 | 64 | 0 | 8 | 239 | 8 | 239 | 3.95e-126 | 357 |
| MS.gene85900.t1 | AT2G25355 | 72.986 | 211 | 57 | 0 | 29 | 239 | 1 | 211 | 1.68e-115 | 329 |
Find 65 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCCTGTACTTGATACTTT+AGG | 0.243843 | 5.3:+30732316 | MS.gene85900:CDS |
| CATGCAGAGGATTCAGTTCT+TGG | 0.279048 | 5.3:+30729736 | MS.gene85900:CDS |
| GTCCTGTACTTGATACTTTA+GGG | 0.284685 | 5.3:+30732317 | MS.gene85900:CDS |
| TCTCCAAGCCTAATAAATAC+TGG | 0.308371 | 5.3:+30729033 | MS.gene85900:CDS |
| CTTTCAACCCAGTATTTATT+AGG | 0.326945 | 5.3:-30729041 | None:intergenic |
| AGTGGGAAAGCTGGAGAGTT+TGG | 0.365780 | 5.3:+30732140 | MS.gene85900:CDS |
| AACCCAGTATTTATTAGGCT+TGG | 0.381536 | 5.3:-30729036 | None:intergenic |
| CGCCTCCAAGCTTAATAGTC+TGG | 0.381633 | 5.3:-30727955 | None:intergenic |
| AAACTTTCTTACATCTGATC+TGG | 0.387573 | 5.3:-30729773 | None:intergenic |
| CTACCGGTGCTTGCATTTGA+AGG | 0.400781 | 5.3:+30730670 | MS.gene85900:CDS |
| GAGATAGCTGTTGGCTTGAA+TGG | 0.403935 | 5.3:+30732355 | MS.gene85900:CDS |
| TTGGCTTGAATGGACGTGTT+TGG | 0.414554 | 5.3:+30732365 | MS.gene85900:CDS |
| TAATGAAGGCTGGCAGGCTT+AGG | 0.414773 | 5.3:+30729009 | MS.gene85900:CDS |
| TTTATGCACACCTCAAACTT+AGG | 0.416349 | 5.3:-30730712 | None:intergenic |
| TATATGTTTGAGTGTTCAAC+TGG | 0.417882 | 5.3:+30732179 | MS.gene85900:CDS |
| AAGAAATATACCTAAGTTTG+AGG | 0.419667 | 5.3:+30730702 | MS.gene85900:CDS |
| TGGCTTGAATGGACGTGTTT+GGG | 0.428587 | 5.3:+30732366 | MS.gene85900:CDS |
| GCTTGGAGGCGGTCTTCGTC+AGG | 0.443385 | 5.3:+30727967 | MS.gene85900:CDS |
| GAAAGCTCAGGATTCATTCC+AGG | 0.447953 | 5.3:-30731963 | None:intergenic |
| TGTTTAGCCAGTGGGAAAGC+TGG | 0.480143 | 5.3:+30732131 | MS.gene85900:intron |
| GCTACGATGATAGTTGTAGA+TGG | 0.480268 | 5.3:-30732541 | None:intergenic |
| AAACTTCGTAGATCAATTAG+TGG | 0.494170 | 5.3:+30727802 | MS.gene85900:CDS |
| CTCCAAGCCTAATAAATACT+GGG | 0.501954 | 5.3:+30729034 | MS.gene85900:CDS |
| TTCCCTAAAGTATCAAGTAC+AGG | 0.507293 | 5.3:-30732319 | None:intergenic |
| AGGTCAAGAACCACATCGCC+AGG | 0.509218 | 5.3:-30727917 | None:intergenic |
| TTTCTGTAATGAAGGCTGGC+AGG | 0.512573 | 5.3:+30729003 | MS.gene85900:CDS |
| TGGTGTCCAACAGAAAATAA+TGG | 0.517813 | 5.3:+30732594 | MS.gene85900:CDS |
| ACCTACTTTAGCATTTCTAC+CGG | 0.519125 | 5.3:+30730654 | MS.gene85900:CDS |
| CTCTCGTTCGAGATAGCTGT+TGG | 0.520750 | 5.3:+30732346 | MS.gene85900:CDS |
| AGTGTTCAACTGGTCTCTCA+AGG | 0.524837 | 5.3:+30732189 | MS.gene85900:CDS |
| TGGTGCTTTGCTTTATGTGC+GGG | 0.527438 | 5.3:+30731926 | MS.gene85900:CDS |
| CGGGTTGTTAAAGCAATCCC+TGG | 0.528699 | 5.3:+30731945 | MS.gene85900:CDS |
| GAGTTTGGTGCCCTAAAAGA+AGG | 0.530680 | 5.3:+30732155 | MS.gene85900:CDS |
| GGCTGAAAAGCTGCTGCAGA+GGG | 0.532622 | 5.3:+30732615 | MS.gene85900:CDS |
| AACCAGACTATTAAGCTTGG+AGG | 0.540367 | 5.3:+30727953 | MS.gene85900:CDS |
| CCATCCGTGCATGAAAGCTC+AGG | 0.542269 | 5.3:-30731975 | None:intergenic |
| CCTGAGCTTTCATGCACGGA+TGG | 0.549458 | 5.3:+30731975 | MS.gene85900:CDS |
| ACAAACCAGACTATTAAGCT+TGG | 0.554569 | 5.3:+30727950 | MS.gene85900:CDS |
| GGGTTGAAAGTTCTCAAAAG+AGG | 0.554866 | 5.3:+30729054 | MS.gene85900:CDS |
| CTTAATAGTCTGGTTTGTCA+TGG | 0.554995 | 5.3:-30727945 | None:intergenic |
| AGTATCAAGTACAGGACATG+TGG | 0.572780 | 5.3:-30732311 | None:intergenic |
| AAAGCTCAGGATTCATTCCA+GGG | 0.572903 | 5.3:-30731962 | None:intergenic |
| GTGATTTCTGTAATGAAGGC+TGG | 0.578880 | 5.3:+30728999 | MS.gene85900:CDS |
| GAATCCTGAGCTTTCATGCA+CGG | 0.588610 | 5.3:+30731971 | MS.gene85900:CDS |
| TGATGTGATTTCTGTAATGA+AGG | 0.589317 | 5.3:+30728995 | MS.gene85900:CDS |
| TGGCTGAAAAGCTGCTGCAG+AGG | 0.589536 | 5.3:+30732614 | MS.gene85900:CDS |
| CCTCCTTCAAATGCAAGCAC+CGG | 0.589684 | 5.3:-30730673 | None:intergenic |
| AAACTCTCCAGCTTTCCCAC+TGG | 0.590205 | 5.3:-30732138 | None:intergenic |
| GAAGTTTGTAGCGGAACCAG+CGG | 0.590888 | 5.3:-30727786 | None:intergenic |
| GGTTGAAAGTTCTCAAAAGA+GGG | 0.594216 | 5.3:+30729055 | MS.gene85900:CDS |
| ACAGTATGTGCCGCATGCAG+AGG | 0.603783 | 5.3:+30729723 | MS.gene85900:intron |
| ACCGGTAGAAATGCTAAAGT+AGG | 0.604930 | 5.3:-30730655 | None:intergenic |
| GATAGTTGTAGATGGAGATG+AGG | 0.610158 | 5.3:-30732533 | None:intergenic |
| TTGGTGCTTTGCTTTATGTG+CGG | 0.616378 | 5.3:+30731925 | MS.gene85900:CDS |
| CCGGTGCTTGCATTTGAAGG+AGG | 0.619754 | 5.3:+30730673 | MS.gene85900:CDS |
| CAGACTATTAAGCTTGGAGG+CGG | 0.619906 | 5.3:+30727956 | MS.gene85900:CDS |
| TCTGGTTTGTCATGGTAGAG+AGG | 0.621859 | 5.3:-30727937 | None:intergenic |
| ATGGTGTATGTTTAGCCAGT+GGG | 0.625560 | 5.3:+30732123 | MS.gene85900:intron |
| TTTGTAGTATCCTGGCGATG+TGG | 0.632913 | 5.3:+30727907 | MS.gene85900:intron |
| GAAATGGAAAGAAAATCCGC+TGG | 0.656200 | 5.3:+30727770 | None:intergenic |
| TTGATCTACGAAGTTTGTAG+CGG | 0.657996 | 5.3:-30727795 | None:intergenic |
| GTATCAAGTACAGGACATGT+GGG | 0.672926 | 5.3:-30732310 | None:intergenic |
| ATAAACTCAGAGGTATTGAG+TGG | 0.675537 | 5.3:+30732574 | MS.gene85900:CDS |
| TAATGCACTTATAAACTCAG+AGG | 0.703003 | 5.3:+30732564 | MS.gene85900:CDS |
| AGAACTGAATCCTCTGCATG+CGG | 0.725568 | 5.3:-30729733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATCTATTTTATATAAAAA+AGG | - | chr5.3:30730870-30730889 | None:intergenic | 10.0% |
| !! | AAAAAAGAAATAATGCAATA+TGG | - | chr5.3:30732420-30732439 | None:intergenic | 15.0% |
| !! | AAATAAAAATAGTCATGAAT+TGG | - | chr5.3:30729954-30729973 | None:intergenic | 15.0% |
| !! | CACTAAAATAAAATGAAAAT+GGG | + | chr5.3:30731302-30731321 | MS.gene85900:intron | 15.0% |
| !! | TAATATGAAAAATTACATGA+TGG | - | chr5.3:30732469-30732488 | None:intergenic | 15.0% |
| !!! | CATTATTTCTTTTTTATTTC+TGG | + | chr5.3:30732425-30732444 | MS.gene85900:intron | 15.0% |
| !!! | TTCATGACTATTTTTATTTT+AGG | + | chr5.3:30729955-30729974 | MS.gene85900:intron | 15.0% |
| !!! | TTGTTAAATGCAATTTTTAT+AGG | + | chr5.3:30729855-30729874 | MS.gene85900:intron | 15.0% |
| !!! | TTTTATTTTGTTTTAAGATG+TGG | + | chr5.3:30731558-30731577 | MS.gene85900:intron | 15.0% |
| !! | AAACTAAAGTCTTCTAATAT+TGG | + | chr5.3:30731709-30731728 | MS.gene85900:intron | 20.0% |
| !! | CCACTAAAATAAAATGAAAA+TGG | + | chr5.3:30731301-30731320 | MS.gene85900:intron | 20.0% |
| !! | GAGTTTCAACTAATATAATA+GGG | + | chr5.3:30728402-30728421 | MS.gene85900:intron | 20.0% |
| !! | GTTAATAAAATTCATGTTTG+CGG | + | chr5.3:30727883-30727902 | MS.gene85900:intron | 20.0% |
| !! | GTTTATATGGTTATGTTAAA+AGG | - | chr5.3:30730076-30730095 | None:intergenic | 20.0% |
| !! | TAACAAAATCAAAGATAGAA+TGG | - | chr5.3:30732104-30732123 | None:intergenic | 20.0% |
| !! | TATAAAATAGATACCTGTTT+AGG | + | chr5.3:30730876-30730895 | MS.gene85900:intron | 20.0% |
| !! | TCTATTAACTATAAATTACG+CGG | + | chr5.3:30729879-30729898 | MS.gene85900:intron | 20.0% |
| !! | TGAAATCTTTAGACTAAATA+GGG | + | chr5.3:30728488-30728507 | MS.gene85900:intron | 20.0% |
| !! | TGAGTTTCAACTAATATAAT+AGG | + | chr5.3:30728401-30728420 | MS.gene85900:intron | 20.0% |
| !! | TGGACATTTAATAGAAAAAT+AGG | - | chr5.3:30729500-30729519 | None:intergenic | 20.0% |
| !!! | AATTCCTTTTTGTTAAATCA+CGG | + | chr5.3:30732028-30732047 | MS.gene85900:intron | 20.0% |
| !!! | AATTTTCTTGTGGATATAAA+AGG | + | chr5.3:30730631-30730650 | MS.gene85900:CDS | 20.0% |
| !!! | AGGATTTCAATTTTGAAATT+AGG | + | chr5.3:30729924-30729943 | MS.gene85900:intron | 20.0% |
| !!! | AGTTTAATCATTTTGTTCTT+AGG | - | chr5.3:30728365-30728384 | None:intergenic | 20.0% |
| !!! | ATTTGTAACAATTTTTAGGA+TGG | + | chr5.3:30728972-30728991 | MS.gene85900:intron | 20.0% |
| !!! | CCATTTTCATTTTATTTTAG+TGG | - | chr5.3:30731304-30731323 | None:intergenic | 20.0% |
| !!! | GGATTTCAATTTTGAAATTA+GGG | + | chr5.3:30729925-30729944 | MS.gene85900:intron | 20.0% |
| !!! | TAATGAGATATGTTTTTCTT+TGG | + | chr5.3:30730252-30730271 | MS.gene85900:intron | 20.0% |
| !!! | TCAGAAATTTGATGATTTTA+GGG | - | chr5.3:30728471-30728490 | None:intergenic | 20.0% |
| !!! | TCTCATTTGTAACAATTTTT+AGG | + | chr5.3:30728968-30728987 | MS.gene85900:intron | 20.0% |
| !!! | TGATTTATTAAAAGTATGCA+TGG | - | chr5.3:30732248-30732267 | None:intergenic | 20.0% |
| !!! | TTCAGAAATTTGATGATTTT+AGG | - | chr5.3:30728472-30728491 | None:intergenic | 20.0% |
| !!! | TTCTATCTTTGATTTTGTTA+TGG | + | chr5.3:30732104-30732123 | MS.gene85900:intron | 20.0% |
| !!! | TTTTCTATTCCTAGATTTTT+AGG | + | chr5.3:30728123-30728142 | MS.gene85900:intron | 20.0% |
| !!! | TTTTTCAGTTAGATGTATTT+GGG | + | chr5.3:30731605-30731624 | MS.gene85900:intron | 20.0% |
| !!! | TTTTTTCAGTTAGATGTATT+TGG | + | chr5.3:30731604-30731623 | MS.gene85900:intron | 20.0% |
| ! | AAAAAAAACCATCTCCTAAT+GGG | + | chr5.3:30729553-30729572 | MS.gene85900:intron | 25.0% |
| ! | AAACATTATTTAACAGCAAC+AGG | - | chr5.3:30731839-30731858 | None:intergenic | 25.0% |
| ! | AACATTATTTAACAGCAACA+GGG | - | chr5.3:30731838-30731857 | None:intergenic | 25.0% |
| ! | AAGAAATATACCTAAGTTTG+AGG | + | chr5.3:30730702-30730721 | MS.gene85900:CDS | 25.0% |
| ! | ACAATTATCATGAATGTTGA+GGG | + | chr5.3:30730988-30731007 | MS.gene85900:intron | 25.0% |
| ! | ACAGATCAGTTATAATATTG+TGG | - | chr5.3:30731201-30731220 | None:intergenic | 25.0% |
| ! | ATTCATTCACAAATTTCCTA+TGG | - | chr5.3:30730149-30730168 | None:intergenic | 25.0% |
| ! | CACATCATACATATATATTC+TGG | + | chr5.3:30729530-30729549 | MS.gene85900:intron | 25.0% |
| ! | CTGAAATCTTTAGACTAAAT+AGG | + | chr5.3:30728487-30728506 | MS.gene85900:intron | 25.0% |
| ! | GTAATAGTATGTTGAAATCT+TGG | - | chr5.3:30728728-30728747 | None:intergenic | 25.0% |
| ! | GTATAAACGGAAAATTTCAA+TGG | - | chr5.3:30728786-30728805 | None:intergenic | 25.0% |
| ! | TAACAACACTGATGTTTATA+TGG | - | chr5.3:30730089-30730108 | None:intergenic | 25.0% |
| ! | TAGTGAATTTCAAGAGATTT+GGG | - | chr5.3:30731506-30731525 | None:intergenic | 25.0% |
| ! | TATGCATATGTAATAATCTG+TGG | - | chr5.3:30731665-30731684 | None:intergenic | 25.0% |
| ! | TCTAATAAATAAACCCCATT+TGG | - | chr5.3:30731438-30731457 | None:intergenic | 25.0% |
| ! | TGCATATATTATCAGCTATT+TGG | - | chr5.3:30729189-30729208 | None:intergenic | 25.0% |
| ! | TGCTGTTAAATAATGTTTCT+GGG | + | chr5.3:30731841-30731860 | MS.gene85900:intron | 25.0% |
| ! | TTAGTGAATTTCAAGAGATT+TGG | - | chr5.3:30731507-30731526 | None:intergenic | 25.0% |
| ! | TTATTATCCAATGTTGTCAA+TGG | - | chr5.3:30730235-30730254 | None:intergenic | 25.0% |
| !! | AAACATATAGCCTTCTTTTA+GGG | - | chr5.3:30732168-30732187 | None:intergenic | 25.0% |
| !! | AAGACTTTAGTTTAACCAAA+CGG | - | chr5.3:30731702-30731721 | None:intergenic | 25.0% |
| !! | AATAGACTAGCAATGTTTTT+CGG | + | chr5.3:30729644-30729663 | MS.gene85900:intron | 25.0% |
| !! | ACTATAGTTACTTTGCTTTA+TGG | + | chr5.3:30730953-30730972 | MS.gene85900:intron | 25.0% |
| !! | AGTTCTTTTTACCAAAATAG+AGG | - | chr5.3:30730464-30730483 | None:intergenic | 25.0% |
| !! | GAGTTTTTGATAGAACATTA+TGG | + | chr5.3:30730500-30730519 | MS.gene85900:intron | 25.0% |
| !! | GTTCTTTTTACCAAAATAGA+GGG | - | chr5.3:30730463-30730482 | None:intergenic | 25.0% |
| !! | TAAACATCAGTGTTGTTAAA+CGG | + | chr5.3:30730091-30730110 | MS.gene85900:intron | 25.0% |
| !! | TTCTTTTTACCAAAATAGAG+GGG | - | chr5.3:30730462-30730481 | None:intergenic | 25.0% |
| !! | TTGCTGTTAAATAATGTTTC+TGG | + | chr5.3:30731840-30731859 | MS.gene85900:intron | 25.0% |
| !!! | AAAACTGAAACCATTGATTT+CGG | - | chr5.3:30729326-30729345 | None:intergenic | 25.0% |
| !!! | TGTTGATTTTTCAATGTTAC+TGG | + | chr5.3:30729120-30729139 | MS.gene85900:intron | 25.0% |
| !!! | TTAATTGTGCAAGTTGTTTT+AGG | + | chr5.3:30729904-30729923 | MS.gene85900:intron | 25.0% |
| !!! | TTACTATTCCTGGATTTTTT+AGG | + | chr5.3:30728220-30728239 | MS.gene85900:intron | 25.0% |
| !!! | TTTTAGGATTTATTCCATGT+TGG | + | chr5.3:30729971-30729990 | MS.gene85900:intron | 25.0% |
| AAAATGAAAATGGGTACACT+CGG | + | chr5.3:30731311-30731330 | MS.gene85900:intron | 30.0% | |
| AAACTTCGTAGATCAATTAG+TGG | + | chr5.3:30727802-30727821 | MS.gene85900:CDS | 30.0% | |
| AAACTTTCTTACATCTGATC+TGG | - | chr5.3:30729776-30729795 | None:intergenic | 30.0% | |
| AACAGGTTAGAAAACTAGAA+TGG | - | chr5.3:30729153-30729172 | None:intergenic | 30.0% | |
| AACTAATATAATAGGGACCA+AGG | + | chr5.3:30728409-30728428 | MS.gene85900:intron | 30.0% | |
| AATCAAAACTTATGCCCATT+AGG | - | chr5.3:30729570-30729589 | None:intergenic | 30.0% | |
| AATTATGCCTTTGGATGAAT+AGG | + | chr5.3:30731406-30731425 | MS.gene85900:intron | 30.0% | |
| ACAATAGTGTGTTTATATGG+TGG | + | chr5.3:30730194-30730213 | MS.gene85900:intron | 30.0% | |
| ACAGGTTAGAAAACTAGAAT+GGG | - | chr5.3:30729152-30729171 | None:intergenic | 30.0% | |
| AGTTCAGCAAAGTGTATAAA+CGG | - | chr5.3:30728799-30728818 | None:intergenic | 30.0% | |
| ATAATATTGTGGCAAGTAAC+TGG | - | chr5.3:30731190-30731209 | None:intergenic | 30.0% | |
| ATGAATAGGATATCTCCAAA+TGG | + | chr5.3:30731420-30731439 | MS.gene85900:intron | 30.0% | |
| ATGAGCTTGTATTTCTTAGT+CGG | - | chr5.3:30730370-30730389 | None:intergenic | 30.0% | |
| ATGGAAACTTCTATACTTTG+TGG | + | chr5.3:30728323-30728342 | MS.gene85900:intron | 30.0% | |
| ATGGTGCTTGCAAAATAAAA+TGG | - | chr5.3:30732085-30732104 | None:intergenic | 30.0% | |
| CAATTATCATGAATGTTGAG+GGG | + | chr5.3:30730989-30731008 | MS.gene85900:intron | 30.0% | |
| CACAATTATCATGAATGTTG+AGG | + | chr5.3:30730987-30731006 | MS.gene85900:intron | 30.0% | |
| CTAGTCTATTCGTTATGAAA+CGG | - | chr5.3:30729634-30729653 | None:intergenic | 30.0% | |
| CTTTCAACCCAGTATTTATT+AGG | - | chr5.3:30729044-30729063 | None:intergenic | 30.0% | |
| GAAAAAAAACCATCTCCTAA+TGG | + | chr5.3:30729552-30729571 | MS.gene85900:intron | 30.0% | |
| GAAAAATTACATGATGGTCA+GGG | - | chr5.3:30732463-30732482 | None:intergenic | 30.0% | |
| GAATAATATCCCGAAATCAA+TGG | + | chr5.3:30729313-30729332 | MS.gene85900:intron | 30.0% | |
| GAGAAATAAGTATCCTAAAC+AGG | - | chr5.3:30730892-30730911 | None:intergenic | 30.0% | |
| GAGTAGGTTTAAGTATTTCT+TGG | + | chr5.3:30731379-30731398 | MS.gene85900:intron | 30.0% | |
| GATACCATTAGCAAAACATT+TGG | + | chr5.3:30730048-30730067 | MS.gene85900:intron | 30.0% | |
| GCGGCAAAATTTAATAATAG+TGG | - | chr5.3:30731631-30731650 | None:intergenic | 30.0% | |
| GTCACAATAGTGTGTTTATA+TGG | + | chr5.3:30730191-30730210 | MS.gene85900:intron | 30.0% | |
| TAAGAAATACAAGCTCATGA+TGG | + | chr5.3:30730372-30730391 | MS.gene85900:intron | 30.0% | |
| TAATGCACTTATAAACTCAG+AGG | + | chr5.3:30732564-30732583 | MS.gene85900:CDS | 30.0% | |
| TAGTCTATTCGTTATGAAAC+GGG | - | chr5.3:30729633-30729652 | None:intergenic | 30.0% | |
| TATACCAATCACAAGAAGAT+TGG | + | chr5.3:30731106-30731125 | MS.gene85900:intron | 30.0% | |
| TATATAATTTAGCCCAATGC+TGG | - | chr5.3:30729600-30729619 | None:intergenic | 30.0% | |
| TATATGTATGATGTGTGCTA+AGG | - | chr5.3:30729525-30729544 | None:intergenic | 30.0% | |
| TATATGTTTGAGTGTTCAAC+TGG | + | chr5.3:30732179-30732198 | MS.gene85900:CDS | 30.0% | |
| TATGTTTCCTAGAACTAGAA+TGG | + | chr5.3:30729235-30729254 | MS.gene85900:intron | 30.0% | |
| TGAAAAATTACATGATGGTC+AGG | - | chr5.3:30732464-30732483 | None:intergenic | 30.0% | |
| TGAATAGGATATCTCCAAAT+GGG | + | chr5.3:30731421-30731440 | MS.gene85900:intron | 30.0% | |
| TGATGTGATTTCTGTAATGA+AGG | + | chr5.3:30728995-30729014 | MS.gene85900:CDS | 30.0% | |
| TGGAAACTTCTATACTTTGT+GGG | + | chr5.3:30728324-30728343 | MS.gene85900:intron | 30.0% | |
| TGTTTGAAAATCATCACTAG+TGG | + | chr5.3:30731348-30731367 | MS.gene85900:intron | 30.0% | |
| TTAGAAAACTAGAATGGGAT+TGG | - | chr5.3:30729147-30729166 | None:intergenic | 30.0% | |
| TTCTAATCACTTTATCCCTA+AGG | - | chr5.3:30728688-30728707 | None:intergenic | 30.0% | |
| TTGATAAAAACGAGTGTCTA+CGG | - | chr5.3:30728099-30728118 | None:intergenic | 30.0% | |
| TTGGCTTAAAATAGACAAAC+AGG | - | chr5.3:30729170-30729189 | None:intergenic | 30.0% | |
| ! | AATCATTTTGTTCTTAGGCA+GGG | - | chr5.3:30728360-30728379 | None:intergenic | 30.0% |
| ! | ACTTGTCATGTAATTTGTGT+TGG | + | chr5.3:30729399-30729418 | MS.gene85900:intron | 30.0% |
| ! | AGAAGTTGTATGTTGTTTGT+AGG | + | chr5.3:30732275-30732294 | MS.gene85900:intron | 30.0% |
| ! | ATTTGTGCAGAATTTTCTTG+TGG | + | chr5.3:30730621-30730640 | MS.gene85900:intron | 30.0% |
| ! | CAAACATATAGCCTTCTTTT+AGG | - | chr5.3:30732169-30732188 | None:intergenic | 30.0% |
| ! | TAATCATTTTGTTCTTAGGC+AGG | - | chr5.3:30728361-30728380 | None:intergenic | 30.0% |
| ! | TATTTTGTACAAGCAGTAAC+TGG | - | chr5.3:30728617-30728636 | None:intergenic | 30.0% |
| ! | TCAAACCATTTTGAATGAGA+GGG | + | chr5.3:30729449-30729468 | MS.gene85900:intron | 30.0% |
| ! | TCAAATTTTGTGTGAATCGA+AGG | + | chr5.3:30728819-30728838 | MS.gene85900:intron | 30.0% |
| ! | TGAATGCTGTTATTTGTTGA+TGG | + | chr5.3:30727829-30727848 | MS.gene85900:intron | 30.0% |
| ! | TTAGGATACTTATTTCTCTG+TGG | + | chr5.3:30730894-30730913 | MS.gene85900:intron | 30.0% |
| ! | TTCAAACCATTTTGAATGAG+AGG | + | chr5.3:30729448-30729467 | MS.gene85900:intron | 30.0% |
| ! | TTTCAGCCATTATTTTCTGT+TGG | - | chr5.3:30732603-30732622 | None:intergenic | 30.0% |
| !! | AAAAAGAACTGACTTTTCTC+AGG | + | chr5.3:30730474-30730493 | MS.gene85900:intron | 30.0% |
| !! | AAACTGAAACCATTGATTTC+GGG | - | chr5.3:30729325-30729344 | None:intergenic | 30.0% |
| !! | ATCACTACTCAAAAGGTATT+GGG | - | chr5.3:30731146-30731165 | None:intergenic | 30.0% |
| !! | ATTCCTAGATTTTTAGGCTT+GGG | + | chr5.3:30728129-30728148 | MS.gene85900:intron | 30.0% |
| !! | GTTAAATAATGTTTCTGGGT+TGG | + | chr5.3:30731845-30731864 | MS.gene85900:intron | 30.0% |
| !! | TATTCCTAGATTTTTAGGCT+TGG | + | chr5.3:30728128-30728147 | MS.gene85900:intron | 30.0% |
| !! | TTGAAATTGCTGTTTCATCT+AGG | + | chr5.3:30732504-30732523 | MS.gene85900:intron | 30.0% |
| !!! | GTGTTTATATGGTGGATTTT+CGG | + | chr5.3:30730202-30730221 | MS.gene85900:intron | 30.0% |
| !!! | TTGGTATGTCCTGTTTTTAT+AGG | + | chr5.3:30731864-30731883 | MS.gene85900:intron | 30.0% |
| AAACTTCTATACTTTGTGGG+TGG | + | chr5.3:30728327-30728346 | MS.gene85900:intron | 35.0% | |
| AAATGAAAATGGGTACACTC+GGG | + | chr5.3:30731312-30731331 | MS.gene85900:intron | 35.0% | |
| AACCCAGTATTTATTAGGCT+TGG | - | chr5.3:30729039-30729058 | None:intergenic | 35.0% | |
| AAGCTCATGATGGTAATTCA+GGG | + | chr5.3:30730382-30730401 | MS.gene85900:intron | 35.0% | |
| AAGTATGCATGGACAGAAAA+AGG | - | chr5.3:30732237-30732256 | None:intergenic | 35.0% | |
| ACAAACCAGACTATTAAGCT+TGG | + | chr5.3:30727950-30727969 | MS.gene85900:CDS | 35.0% | |
| ACAAGCAATTCACGAGTTAT+AGG | - | chr5.3:30730422-30730441 | None:intergenic | 35.0% | |
| ACACAACCTCCTATAAAAAC+AGG | - | chr5.3:30731876-30731895 | None:intergenic | 35.0% | |
| ACCATTATAGCCAATTCATG+CGG | - | chr5.3:30728654-30728673 | None:intergenic | 35.0% | |
| ACCTACTTTAGCATTTCTAC+CGG | + | chr5.3:30730654-30730673 | MS.gene85900:CDS | 35.0% | |
| ACCTCCGTGATTTAACAAAA+AGG | - | chr5.3:30732035-30732054 | None:intergenic | 35.0% | |
| AGAATACGTTACTAGCAGAA+TGG | - | chr5.3:30728951-30728970 | None:intergenic | 35.0% | |
| AGTTTCTGCTTTACTATTCC+TGG | + | chr5.3:30728210-30728229 | MS.gene85900:intron | 35.0% | |
| CATTCACAAATTTCCTATGG+CGG | - | chr5.3:30730146-30730165 | None:intergenic | 35.0% | |
| CTATAGTATGAGACATTGTC+AGG | - | chr5.3:30730940-30730959 | None:intergenic | 35.0% | |
| CTCCAAGCCTAATAAATACT+GGG | + | chr5.3:30729034-30729053 | MS.gene85900:CDS | 35.0% | |
| CTGGAATAAACAATCCAACA+TGG | - | chr5.3:30729988-30730007 | None:intergenic | 35.0% | |
| CTTGGTCTAAATTATGCCTT+TGG | + | chr5.3:30731397-30731416 | MS.gene85900:intron | 35.0% | |
| GAATAGGATATCTCCAAATG+GGG | + | chr5.3:30731422-30731441 | MS.gene85900:intron | 35.0% | |
| GAGATATCCTATTCATCCAA+AGG | - | chr5.3:30731416-30731435 | None:intergenic | 35.0% | |
| GGTTGAAAGTTCTCAAAAGA+GGG | + | chr5.3:30729055-30729074 | MS.gene85900:CDS | 35.0% | |
| GTCCTGTACTTGATACTTTA+GGG | + | chr5.3:30732317-30732336 | MS.gene85900:CDS | 35.0% | |
| GTTTCCATTCTACAACAAGA+GGG | + | chr5.3:30729266-30729285 | MS.gene85900:intron | 35.0% | |
| TCTCCAAGCCTAATAAATAC+TGG | + | chr5.3:30729033-30729052 | MS.gene85900:CDS | 35.0% | |
| TCTTTACTCATCTCCATACT+TGG | + | chr5.3:30728865-30728884 | MS.gene85900:intron | 35.0% | |
| TGAATTTCAAGAGATTTGGG+TGG | - | chr5.3:30731503-30731522 | None:intergenic | 35.0% | |
| TGATAAAAACGAGTGTCTAC+GGG | - | chr5.3:30728098-30728117 | None:intergenic | 35.0% | |
| TGCTAAGAAGATACCAAGTA+TGG | - | chr5.3:30728881-30728900 | None:intergenic | 35.0% | |
| TGGTGTCCAACAGAAAATAA+TGG | + | chr5.3:30732594-30732613 | MS.gene85900:CDS | 35.0% | |
| TGTCCTGTACTTGATACTTT+AGG | + | chr5.3:30732316-30732335 | MS.gene85900:CDS | 35.0% | |
| TGTTTCCATTCTACAACAAG+AGG | + | chr5.3:30729265-30729284 | MS.gene85900:intron | 35.0% | |
| TTGACTATTTCCGCATGAAT+TGG | + | chr5.3:30728641-30728660 | MS.gene85900:intron | 35.0% | |
| TTGATCTACGAAGTTTGTAG+CGG | - | chr5.3:30727798-30727817 | None:intergenic | 35.0% | |
| TTGGATTGTTTATTCCAGCA+TGG | + | chr5.3:30729990-30730009 | MS.gene85900:intron | 35.0% | |
| TTTATGCACACCTCAAACTT+AGG | - | chr5.3:30730715-30730734 | None:intergenic | 35.0% | |
| ! | AACTATTGTCCCCTCTATTT+TGG | + | chr5.3:30730450-30730469 | MS.gene85900:intron | 35.0% |
| ! | ATGGTTTTCTTGTTCTCCTT+AGG | + | chr5.3:30728669-30728688 | MS.gene85900:intron | 35.0% |
| ! | CACACAATTTGGAACTCTAA+AGG | - | chr5.3:30728294-30728313 | None:intergenic | 35.0% |
| ! | CATCACTACTCAAAAGGTAT+TGG | - | chr5.3:30731147-30731166 | None:intergenic | 35.0% |
| ! | CTTAATAGTCTGGTTTGTCA+TGG | - | chr5.3:30727948-30727967 | None:intergenic | 35.0% |
| ! | TATTATGCAACCAGCATTGA+AGG | - | chr5.3:30728444-30728463 | None:intergenic | 35.0% |
| ! | TCCTTTTTGTTAAATCACGG+AGG | + | chr5.3:30732031-30732050 | MS.gene85900:intron | 35.0% |
| ! | TGATTTTCCTTTCCAGCATT+GGG | + | chr5.3:30729585-30729604 | MS.gene85900:intron | 35.0% |
| ! | TGGTTTTCTTGTTCTCCTTA+GGG | + | chr5.3:30728670-30728689 | MS.gene85900:intron | 35.0% |
| ! | TTCAATGCTGGTTGCATAAT+AGG | + | chr5.3:30728443-30728462 | MS.gene85900:intron | 35.0% |
| ! | TTCCCTAAAGTATCAAGTAC+AGG | - | chr5.3:30732322-30732341 | None:intergenic | 35.0% |
| ! | TTGATTTTCCTTTCCAGCAT+TGG | + | chr5.3:30729584-30729603 | MS.gene85900:intron | 35.0% |
| ! | TTTTGCCATCACTACTCAAA+AGG | - | chr5.3:30731153-30731172 | None:intergenic | 35.0% |
| !! | ATAAACTCAGAGGTATTGAG+TGG | + | chr5.3:30732574-30732593 | MS.gene85900:CDS | 35.0% |
| !! | CAATACCTTTTGAGTAGTGA+TGG | + | chr5.3:30731145-30731164 | MS.gene85900:intron | 35.0% |
| !! | CTTTAGAGTTCCAAATTGTG+TGG | + | chr5.3:30728292-30728311 | MS.gene85900:intron | 35.0% |
| !! | TATCAGTCCATTCTAGTTCT+AGG | - | chr5.3:30729245-30729264 | None:intergenic | 35.0% |
| !!! | ATTCCTGGATTTTTTAGGCT+TGG | + | chr5.3:30728225-30728244 | MS.gene85900:intron | 35.0% |
| !!! | GTATGTCCTGTTTTTATAGG+AGG | + | chr5.3:30731867-30731886 | MS.gene85900:intron | 35.0% |
| !!! | TTCCTGGATTTTTTAGGCTT+GGG | + | chr5.3:30728226-30728245 | MS.gene85900:intron | 35.0% |
| AAACACACTATTGTGACCCA+CGG | - | chr5.3:30730188-30730207 | None:intergenic | 40.0% | |
| AAAGCTCAGGATTCATTCCA+GGG | - | chr5.3:30731965-30731984 | None:intergenic | 40.0% | |
| AAAGTGGAACTTGTAGGGAT+GGG | + | chr5.3:30729291-30729310 | MS.gene85900:intron | 40.0% | |
| AAATTGTGTGGAGCTGACTA+TGG | + | chr5.3:30728304-30728323 | MS.gene85900:intron | 40.0% | |
| AACAGGGAAATGACAGATCA+AGG | - | chr5.3:30731822-30731841 | None:intergenic | 40.0% | |
| AACCAGACTATTAAGCTTGG+AGG | + | chr5.3:30727953-30727972 | MS.gene85900:CDS | 40.0% | |
| AACCTGCAAGGTGAAGAATT+AGG | - | chr5.3:30731907-30731926 | None:intergenic | 40.0% | |
| AACTTATGCCCATTAGGAGA+TGG | - | chr5.3:30729564-30729583 | None:intergenic | 40.0% | |
| AATTTAGCCCAATGCTGGAA+AGG | - | chr5.3:30729595-30729614 | None:intergenic | 40.0% | |
| ACAGGGAAATGACAGATCAA+GGG | - | chr5.3:30731821-30731840 | None:intergenic | 40.0% | |
| ACCAATCACAAGAAGATTGG+AGG | + | chr5.3:30731109-30731128 | MS.gene85900:intron | 40.0% | |
| ACCGGTAGAAATGCTAAAGT+AGG | - | chr5.3:30730658-30730677 | None:intergenic | 40.0% | |
| ACCTCCAATCTTCTTGTGAT+TGG | - | chr5.3:30731113-30731132 | None:intergenic | 40.0% | |
| AGATGAGTACATTGCCCTAT+AGG | + | chr5.3:30730294-30730313 | MS.gene85900:intron | 40.0% | |
| AGTATCAAGTACAGGACATG+TGG | - | chr5.3:30732314-30732333 | None:intergenic | 40.0% | |
| ATAGTCAGCTCCACACAATT+TGG | - | chr5.3:30728305-30728324 | None:intergenic | 40.0% | |
| ATATCAACCCTCTTCGTTCA+AGG | - | chr5.3:30728517-30728536 | None:intergenic | 40.0% | |
| ATCATCACTAGTGGTGTATG+TGG | + | chr5.3:30731357-30731376 | MS.gene85900:intron | 40.0% | |
| ATGGTGTATGTTTAGCCAGT+GGG | + | chr5.3:30732123-30732142 | MS.gene85900:intron | 40.0% | |
| CAAGCTCATGATGGTAATTC+AGG | + | chr5.3:30730381-30730400 | MS.gene85900:intron | 40.0% | |
| CCAATGTTGTCAATGGAAGA+AGG | - | chr5.3:30730228-30730247 | None:intergenic | 40.0% | |
| CCTTCTTCCATTGACAACAT+TGG | + | chr5.3:30730225-30730244 | MS.gene85900:intron | 40.0% | |
| CGAGTTTGAGCGTAAACAAA+AGG | + | chr5.3:30728551-30728570 | MS.gene85900:intron | 40.0% | |
| CTGATGTAGAGCTATAAGCA+TGG | - | chr5.3:30730326-30730345 | None:intergenic | 40.0% | |
| GAAGATTGGAGGTCAAACAT+TGG | + | chr5.3:30731120-30731139 | MS.gene85900:intron | 40.0% | |
| GACATTGTCAGGACTAATTG+TGG | - | chr5.3:30730929-30730948 | None:intergenic | 40.0% | |
| GATAGTTGTAGATGGAGATG+AGG | - | chr5.3:30732536-30732555 | None:intergenic | 40.0% | |
| GCAATGTACTCATCTGACTT+GGG | - | chr5.3:30730289-30730308 | None:intergenic | 40.0% | |
| GCTACGATGATAGTTGTAGA+TGG | - | chr5.3:30732544-30732563 | None:intergenic | 40.0% | |
| GGGTGAGTATATTAGTGTGA+AGG | + | chr5.3:30729075-30729094 | MS.gene85900:intron | 40.0% | |
| GGGTTGAAAGTTCTCAAAAG+AGG | + | chr5.3:30729054-30729073 | MS.gene85900:CDS | 40.0% | |
| GTATCAAGTACAGGACATGT+GGG | - | chr5.3:30732313-30732332 | None:intergenic | 40.0% | |
| GTCAGGACTAATTGTGGAAA+AGG | - | chr5.3:30730923-30730942 | None:intergenic | 40.0% | |
| GTGATTTCTGTAATGAAGGC+TGG | + | chr5.3:30728999-30729018 | MS.gene85900:CDS | 40.0% | |
| GTTTATTCCAGCATGGAGTA+GGG | + | chr5.3:30729997-30730016 | MS.gene85900:intron | 40.0% | |
| TAAAGTGGAACTTGTAGGGA+TGG | + | chr5.3:30729290-30729309 | MS.gene85900:intron | 40.0% | |
| TAATTCTTCACCTTGCAGGT+TGG | + | chr5.3:30731906-30731925 | MS.gene85900:intron | 40.0% | |
| TAGAGGGGACAATAGTTGAA+TGG | - | chr5.3:30730447-30730466 | None:intergenic | 40.0% | |
| TATGGTGTATGTTTAGCCAG+TGG | + | chr5.3:30732122-30732141 | MS.gene85900:intron | 40.0% | |
| TCCGCATGAATTGGCTATAA+TGG | + | chr5.3:30728650-30728669 | MS.gene85900:intron | 40.0% | |
| TGTCAGTCTTAACAGACAAG+AGG | - | chr5.3:30731264-30731283 | None:intergenic | 40.0% | |
| TGTTTATTCCAGCATGGAGT+AGG | + | chr5.3:30729996-30730015 | MS.gene85900:intron | 40.0% | |
| TTCTATACTTTGTGGGTGGT+GGG | + | chr5.3:30728331-30728350 | MS.gene85900:intron | 40.0% | |
| TTGCAGGACGAAACAAAAGA+GGG | - | chr5.3:30731793-30731812 | None:intergenic | 40.0% | |
| TTTGCAGGACGAAACAAAAG+AGG | - | chr5.3:30731794-30731813 | None:intergenic | 40.0% | |
| ! | AACCATTTTGAATGAGAGGG+TGG | + | chr5.3:30729452-30729471 | MS.gene85900:intron | 40.0% |
| ! | AAGCATGGAGTACTCCTATA+GGG | - | chr5.3:30730311-30730330 | None:intergenic | 40.0% |
| ! | AAGCTTTGTCCTACTAAGTG+GGG | - | chr5.3:30730549-30730568 | None:intergenic | 40.0% |
| ! | CAAGCTTTGTCCTACTAAGT+GGG | - | chr5.3:30730550-30730569 | None:intergenic | 40.0% |
| ! | GGTGCCAAATGTTTTGCTAA+TGG | - | chr5.3:30730055-30730074 | None:intergenic | 40.0% |
| ! | GTGTTGTTAAACGGTTGTCA+TGG | + | chr5.3:30730100-30730119 | MS.gene85900:intron | 40.0% |
| ! | TAAATCACGGAGGTTTTCTC+TGG | + | chr5.3:30732041-30732060 | MS.gene85900:intron | 40.0% |
| ! | TAAGCATGGAGTACTCCTAT+AGG | - | chr5.3:30730312-30730331 | None:intergenic | 40.0% |
| ! | TTAGCCCTCTTGTTGTAGAA+TGG | - | chr5.3:30729273-30729292 | None:intergenic | 40.0% |
| ! | TTGGTGCTTTGCTTTATGTG+CGG | + | chr5.3:30731925-30731944 | MS.gene85900:CDS | 40.0% |
| !! | CTAGATTTTTAGGCTTGGGA+GGG | + | chr5.3:30728133-30728152 | MS.gene85900:intron | 40.0% |
| !! | GACTAGCAATGTTTTTCGGT+AGG | + | chr5.3:30729648-30729667 | MS.gene85900:intron | 40.0% |
| !! | TAGATTTTTAGGCTTGGGAG+GGG | + | chr5.3:30728134-30728153 | MS.gene85900:intron | 40.0% |
| !! | TTTGCGGTTTTGTAGTATCC+TGG | + | chr5.3:30727899-30727918 | MS.gene85900:intron | 40.0% |
| !!! | TGGATTTTTTAGGCTTGGGA+GGG | + | chr5.3:30728230-30728249 | MS.gene85900:intron | 40.0% |
| AAGATAACCCTACTCCATGC+TGG | - | chr5.3:30730007-30730026 | None:intergenic | 45.0% | |
| AAGATGTGGCCAAGACTATG+AGG | + | chr5.3:30731572-30731591 | MS.gene85900:intron | 45.0% | |
| AAGCATAACGCATTGCCGTT+TGG | + | chr5.3:30731684-30731703 | MS.gene85900:intron | 45.0% | |
| AATAGGGACCAAGGCTTGTA+AGG | + | chr5.3:30728418-30728437 | MS.gene85900:intron | 45.0% | |
| ACCATGCAACATGCATTCAC+AGG | - | chr5.3:30731469-30731488 | None:intergenic | 45.0% | |
| ACTAGTGGTGTATGTGGAGT+AGG | + | chr5.3:30731363-30731382 | MS.gene85900:intron | 45.0% | |
| AGAACTGAATCCTCTGCATG+CGG | - | chr5.3:30729736-30729755 | None:intergenic | 45.0% | |
| AGGGCTAAAGTGGAACTTGT+AGG | + | chr5.3:30729285-30729304 | MS.gene85900:intron | 45.0% | |
| ATCATGAATGTTGAGGGGCT+TGG | + | chr5.3:30730994-30731013 | MS.gene85900:intron | 45.0% | |
| ATTGAAGGCCTTACAAGCCT+TGG | - | chr5.3:30728429-30728448 | None:intergenic | 45.0% | |
| CAGACTATTAAGCTTGGAGG+CGG | + | chr5.3:30727956-30727975 | MS.gene85900:CDS | 45.0% | |
| CATGCAGAGGATTCAGTTCT+TGG | + | chr5.3:30729736-30729755 | MS.gene85900:CDS | 45.0% | |
| CCACTTAGTAGGACAAAGCT+TGG | + | chr5.3:30730548-30730567 | MS.gene85900:intron | 45.0% | |
| CCTCCCAAGCCTAAAAATCT+AGG | - | chr5.3:30728135-30728154 | None:intergenic | 45.0% | |
| CTACAACAAGAGGGCTAAAG+TGG | + | chr5.3:30729275-30729294 | MS.gene85900:intron | 45.0% | |
| CTCATGATGGTAATTCAGGG+AGG | + | chr5.3:30730385-30730404 | MS.gene85900:intron | 45.0% | |
| CTCCCAAGCCTAAAAAATCC+AGG | - | chr5.3:30728231-30728250 | None:intergenic | 45.0% | |
| CTTCTATACTTTGTGGGTGG+TGG | + | chr5.3:30728330-30728349 | MS.gene85900:intron | 45.0% | |
| GAAAGCTCAGGATTCATTCC+AGG | - | chr5.3:30731966-30731985 | None:intergenic | 45.0% | |
| GAATCCTGAGCTTTCATGCA+CGG | + | chr5.3:30731971-30731990 | MS.gene85900:CDS | 45.0% | |
| GACCACCCTCTCATTCAAAA+TGG | - | chr5.3:30729457-30729476 | None:intergenic | 45.0% | |
| GATATTTGGACAACCGCCAT+AGG | + | chr5.3:30730130-30730149 | MS.gene85900:intron | 45.0% | |
| GGCAATGTACTCATCTGACT+TGG | - | chr5.3:30730290-30730309 | None:intergenic | 45.0% | |
| GGGCTAAAGTGGAACTTGTA+GGG | + | chr5.3:30729286-30729305 | MS.gene85900:intron | 45.0% | |
| GTAATAATCTGTGGCCGTGT+GGG | - | chr5.3:30731656-30731675 | None:intergenic | 45.0% | |
| GTATGATGTGTGCTAAGGAG+TGG | - | chr5.3:30729520-30729539 | None:intergenic | 45.0% | |
| TATTCGTTATGAAACGGGCG+AGG | - | chr5.3:30729628-30729647 | None:intergenic | 45.0% | |
| TCATGAATGTTGAGGGGCTT+GGG | + | chr5.3:30730995-30731014 | MS.gene85900:intron | 45.0% | |
| TCCTGTGAATGCATGTTGCA+TGG | + | chr5.3:30731465-30731484 | MS.gene85900:intron | 45.0% | |
| TGAATGGACGTGTTTGGGTA+TGG | + | chr5.3:30732371-30732390 | MS.gene85900:intron | 45.0% | |
| TGCCTAATTCTTCACCTTGC+AGG | + | chr5.3:30731902-30731921 | MS.gene85900:intron | 45.0% | |
| TGGCTTGAATGGACGTGTTT+GGG | + | chr5.3:30732366-30732385 | MS.gene85900:CDS | 45.0% | |
| TGGTGCTTTGCTTTATGTGC+GGG | + | chr5.3:30731926-30731945 | MS.gene85900:CDS | 45.0% | |
| TGTAATAATCTGTGGCCGTG+TGG | - | chr5.3:30731657-30731676 | None:intergenic | 45.0% | |
| TTTCTGTAATGAAGGCTGGC+AGG | + | chr5.3:30729003-30729022 | MS.gene85900:CDS | 45.0% | |
| TTTGTAGTATCCTGGCGATG+TGG | + | chr5.3:30727907-30727926 | MS.gene85900:intron | 45.0% | |
| TTTGTCCTACTAAGTGGGGT+CGG | - | chr5.3:30730545-30730564 | None:intergenic | 45.0% | |
| ! | ACTGGTCTCTCAAGGATGTA+TGG | + | chr5.3:30732197-30732216 | MS.gene85900:intron | 45.0% |
| ! | AGTGTTCAACTGGTCTCTCA+AGG | + | chr5.3:30732189-30732208 | MS.gene85900:CDS | 45.0% |
| ! | CCAAGCTTTGTCCTACTAAG+TGG | - | chr5.3:30730551-30730570 | None:intergenic | 45.0% |
| ! | TCTGGTTTGTCATGGTAGAG+AGG | - | chr5.3:30727940-30727959 | None:intergenic | 45.0% |
| ! | TTGGCTTGAATGGACGTGTT+TGG | + | chr5.3:30732365-30732384 | MS.gene85900:CDS | 45.0% |
| !! | CAGATCAAGGGTTAGTTTGC+AGG | - | chr5.3:30731809-30731828 | None:intergenic | 45.0% |
| !! | CCTAGATTTTTAGGCTTGGG+AGG | + | chr5.3:30728132-30728151 | MS.gene85900:intron | 45.0% |
| !! | GAGATAGCTGTTGGCTTGAA+TGG | + | chr5.3:30732355-30732374 | MS.gene85900:CDS | 45.0% |
| !! | GAGTTTGGTGCCCTAAAAGA+AGG | + | chr5.3:30732155-30732174 | MS.gene85900:CDS | 45.0% |
| !!! | CTGGATTTTTTAGGCTTGGG+AGG | + | chr5.3:30728229-30728248 | MS.gene85900:intron | 45.0% |
| !!! | GGATTTTTTAGGCTTGGGAG+GGG | + | chr5.3:30728231-30728250 | MS.gene85900:intron | 45.0% |
| !!! | TATCTATTTTATATAAAAAA+GGG | - | chr5.3:30730869-30730888 | None:intergenic | 5.0% |
| AAACTCTCCAGCTTTCCCAC+TGG | - | chr5.3:30732141-30732160 | None:intergenic | 50.0% | |
| AGAGGCAAGATTTCTCGAGC+AGG | - | chr5.3:30731246-30731265 | None:intergenic | 50.0% | |
| AGCTTTCATGCACGGATGGT+TGG | + | chr5.3:30731979-30731998 | MS.gene85900:intron | 50.0% | |
| AGTGGGAAAGCTGGAGAGTT+TGG | + | chr5.3:30732140-30732159 | MS.gene85900:CDS | 50.0% | |
| CCTCCTTCAAATGCAAGCAC+CGG | - | chr5.3:30730676-30730695 | None:intergenic | 50.0% | |
| CGCCTCCAAGCTTAATAGTC+TGG | - | chr5.3:30727958-30727977 | None:intergenic | 50.0% | |
| CGGGTTGTTAAAGCAATCCC+TGG | + | chr5.3:30731945-30731964 | MS.gene85900:CDS | 50.0% | |
| CTACCGGTGCTTGCATTTGA+AGG | + | chr5.3:30730670-30730689 | MS.gene85900:CDS | 50.0% | |
| CTCTCGTTCGAGATAGCTGT+TGG | + | chr5.3:30732346-30732365 | MS.gene85900:CDS | 50.0% | |
| GCTTGTAAGGCCTTCAATGC+TGG | + | chr5.3:30728431-30728450 | MS.gene85900:intron | 50.0% | |
| GTTAAACGGTTGTCATGGCG+TGG | + | chr5.3:30730105-30730124 | MS.gene85900:intron | 50.0% | |
| TAATGAAGGCTGGCAGGCTT+AGG | + | chr5.3:30729009-30729028 | MS.gene85900:CDS | 50.0% | |
| TACGCCATGCCTCATAGTCT+TGG | - | chr5.3:30731584-30731603 | None:intergenic | 50.0% | |
| TGTTTAGCCAGTGGGAAAGC+TGG | + | chr5.3:30732131-30732150 | MS.gene85900:intron | 50.0% | |
| TTGTGAATGAATGCCCGCCA+TGG | + | chr5.3:30730157-30730176 | MS.gene85900:intron | 50.0% | |
| ! | AAATTTTGCCGCTGCCCACA+CGG | + | chr5.3:30731639-30731658 | MS.gene85900:intron | 50.0% |
| ! | AAGCAAAGCACCAACCTGCA+AGG | - | chr5.3:30731919-30731938 | None:intergenic | 50.0% |
| ! | AGGGTGTCCTTGAACGAAGA+GGG | + | chr5.3:30728507-30728526 | MS.gene85900:intron | 50.0% |
| ! | GAAGTTTGTAGCGGAACCAG+CGG | - | chr5.3:30727789-30727808 | None:intergenic | 50.0% |
| ! | TAGGGTGTCCTTGAACGAAG+AGG | + | chr5.3:30728506-30728525 | MS.gene85900:intron | 50.0% |
| AAACGGTTGTCATGGCGTGG+CGG | + | chr5.3:30730108-30730127 | MS.gene85900:intron | 55.0% | |
| ACAGTATGTGCCGCATGCAG+AGG | + | chr5.3:30729723-30729742 | MS.gene85900:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr5.3:30730537-30730556 | None:intergenic | 55.0% | |
| AGGTCAAGAACCACATCGCC+AGG | - | chr5.3:30727920-30727939 | None:intergenic | 55.0% | |
| CCATCCGTGCATGAAAGCTC+AGG | - | chr5.3:30731978-30731997 | None:intergenic | 55.0% | |
| CCGGTGCTTGCATTTGAAGG+AGG | + | chr5.3:30730673-30730692 | MS.gene85900:CDS | 55.0% | |
| CCTGAGCTTTCATGCACGGA+TGG | + | chr5.3:30731975-30731994 | MS.gene85900:CDS | 55.0% | |
| GCAAGATTTCTCGAGCAGGC+TGG | - | chr5.3:30731242-30731261 | None:intergenic | 55.0% | |
| GGCTGAAAAGCTGCTGCAGA+GGG | + | chr5.3:30732615-30732634 | MS.gene85900:CDS | 55.0% | |
| GTGGCCAAGACTATGAGGCA+TGG | + | chr5.3:30731577-30731596 | MS.gene85900:intron | 55.0% | |
| TGAATGAATGCCCGCCATGG+AGG | + | chr5.3:30730160-30730179 | MS.gene85900:intron | 55.0% | |
| TGGCTGAAAAGCTGCTGCAG+AGG | + | chr5.3:30732614-30732633 | MS.gene85900:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+AGG | + | chr5.3:30730537-30730556 | MS.gene85900:intron | 55.0% | |
| !! | GTCATGGCGTGGCGGATATT+TGG | + | chr5.3:30730116-30730135 | MS.gene85900:intron | 55.0% |
| GGGTACACTCGGGATGCTCA+CGG | + | chr5.3:30731322-30731341 | MS.gene85900:intron | 60.0% | |
| GGTACACTCGGGATGCTCAC+GGG | + | chr5.3:30731323-30731342 | MS.gene85900:intron | 60.0% | |
| TTCTCGAGCAGGCTGGTGAG+TGG | - | chr5.3:30731235-30731254 | None:intergenic | 60.0% | |
| ATCTGTGGCCGTGTGGGCAG+CGG | - | chr5.3:30731650-30731669 | None:intergenic | 65.0% | |
| GCTTGGAGGCGGTCTTCGTC+AGG | + | chr5.3:30727967-30727986 | MS.gene85900:CDS | 65.0% | |
| GGAGGCGGTCTTCGTCAGGT+AGG | + | chr5.3:30727971-30727990 | MS.gene85900:intron | 65.0% | |
| TGTGACCCACGGTGCCTCCA+TGG | - | chr5.3:30730177-30730196 | None:intergenic | 65.0% | |
| ACCCACGGTGCCTCCATGGC+GGG | - | chr5.3:30730173-30730192 | None:intergenic | 70.0% | |
| GACCCACGGTGCCTCCATGG+CGG | - | chr5.3:30730174-30730193 | None:intergenic | 70.0% | |
| !! | GCCCGCCATGGAGGCACCGT+GGG | + | chr5.3:30730169-30730188 | MS.gene85900:intron | 75.0% |
| !! | TGCCCGCCATGGAGGCACCG+TGG | + | chr5.3:30730168-30730187 | MS.gene85900:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 30727773 | 30732645 | 30727773 | ID=MS.gene85900 |
| chr5.3 | mRNA | 30727773 | 30732645 | 30727773 | ID=MS.gene85900.t1;Parent=MS.gene85900 |
| chr5.3 | exon | 30727773 | 30727823 | 30727773 | ID=MS.gene85900.t1.exon1;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30727773 | 30727823 | 30727773 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| chr5.3 | exon | 30727914 | 30727988 | 30727914 | ID=MS.gene85900.t1.exon2;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30727914 | 30727988 | 30727914 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| chr5.3 | exon | 30728990 | 30729076 | 30728990 | ID=MS.gene85900.t1.exon3;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30728990 | 30729076 | 30728990 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| chr5.3 | exon | 30729727 | 30729783 | 30729727 | ID=MS.gene85900.t1.exon4;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30729727 | 30729783 | 30729727 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| chr5.3 | exon | 30730631 | 30730723 | 30730631 | ID=MS.gene85900.t1.exon5;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30730631 | 30730723 | 30730631 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| chr5.3 | exon | 30731924 | 30731996 | 30731924 | ID=MS.gene85900.t1.exon6;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30731924 | 30731996 | 30731924 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| chr5.3 | exon | 30732138 | 30732213 | 30732138 | ID=MS.gene85900.t1.exon7;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30732138 | 30732213 | 30732138 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| chr5.3 | exon | 30732297 | 30732387 | 30732297 | ID=MS.gene85900.t1.exon8;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30732297 | 30732387 | 30732297 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| chr5.3 | exon | 30732526 | 30732645 | 30732526 | ID=MS.gene85900.t1.exon9;Parent=MS.gene85900.t1 |
| chr5.3 | CDS | 30732526 | 30732645 | 30732526 | ID=cds.MS.gene85900.t1;Parent=MS.gene85900.t1 |
| Gene Sequence |
| Protein sequence |
